Citrus Sinensis ID: 011714
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECK2 | 548 | Pentatricopeptide repeat- | yes | no | 0.853 | 0.746 | 0.287 | 4e-52 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.816 | 0.631 | 0.290 | 1e-50 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.853 | 0.683 | 0.282 | 2e-50 | |
| Q9SFV9 | 880 | Pentatricopeptide repeat- | no | no | 0.843 | 0.459 | 0.291 | 4e-50 | |
| Q9LUR2 | 507 | Putative pentatricopeptid | no | no | 0.832 | 0.786 | 0.279 | 4e-49 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.851 | 0.541 | 0.297 | 7e-49 | |
| P0C7R3 | 512 | Pentatricopeptide repeat- | no | no | 0.816 | 0.763 | 0.287 | 1e-48 | |
| Q9FMD3 | 504 | Pentatricopeptide repeat- | no | no | 0.851 | 0.809 | 0.280 | 3e-48 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.883 | 0.579 | 0.273 | 3e-48 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.805 | 0.599 | 0.291 | 6e-48 |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 218/414 (52%), Gaps = 5/414 (1%)
Query: 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119
R++ L + ID+F + K S+ DFN LL A+V L + + + + G+ +
Sbjct: 60 RLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 119
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+TF+I+I C+C A ++ M GY P+ T LVN C+ R+ +A+ ++D
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239
+M IG KP+I YN ++ LC RV +A++ ++ G++P+V TYTA+++G C
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 239
Query: 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299
R ++A LL++ I++ +TPNV+T++ L + + K G ++ L + M + + PD ++YS
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299
Query: 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359
+L+NGL +I A +F MV G D N+L+ G C + +ED ++F
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC-----KAKRVEDGMKLFR 354
Query: 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419
+M+++ V++ TY +I+ + D+A G P T+N ++ LC G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414
Query: 420 KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+++KAL++ M + +Y +I + + K +A +L+ + +G+ P
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKP 468
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/431 (29%), Positives = 206/431 (47%), Gaps = 40/431 (9%)
Query: 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY 114
+R + I + + ID+F+S+ + + DFN L A+ + + + F
Sbjct: 40 ERLRNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 99
Query: 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA 174
G+ + +T +IMI CYC K A V+ + GY P+ TF+ LVN C GR+ EA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD---------- 224
+ ++D+M + +P++ T + L+ GLC GRV EA ++ + G +PD
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Query: 225 -------------------------VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN 259
V Y+ V+D CK G ++A+ L NE +G+ +
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 260 VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFK 319
VVT+++L G C +G G +L+ M RN +PD +++S L++ +K GK+ A ++
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 320 EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379
EM+ G D NSL+ G C +++ L +A Q+F+ M K D TY I+I +
Sbjct: 340 EMITRGIAPDTITYNSLIDGFC-----KENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394
Query: 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS 439
K K+ D+ + G IP TIT+N ++ C GK++ A L M PS
Sbjct: 395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPS 454
Query: 440 RTSYDMLITKL 450
+Y +L+ L
Sbjct: 455 VVTYGILLDGL 465
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 207/417 (49%), Gaps = 8/417 (1%)
Query: 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW 121
KA + + + D + + V +N +L +L + + A++ P+
Sbjct: 184 KAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM 181
T++I+I C + A K++D M D G P+V T+ +LVN +CK GRL EA++ L+ M
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 182 GRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241
GC+PN+ T+N +L+ +C GR +A ++L ++ G P V T+ +++ C+ G
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360
Query: 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301
A+++L + + G PN +++N L +G+CKE + + L+ M R C PD ++Y+T+
Sbjct: 361 GRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420
Query: 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361
L L K GK+ AV I ++ G N+++ GL K A ++ ++M
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK-----AIKLLDEM 475
Query: 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421
K D TY ++ L + K DEA+ H MG P +TFN+++ LC +
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 422 DKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRKPQ 478
D+A+ L M P+ TSY +LI L + +A L +G++ + +
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAE 592
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 214/412 (51%), Gaps = 8/412 (1%)
Query: 66 LKERIDIFDSIKKDGTNW--SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTF 123
L++ + +FD + K+ T SVS ++ L+ L + E A + G P++ T+
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVS-YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTY 304
Query: 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183
+++I+ C++ +A + D M G PNV T+T+L++ LC+ G+++EA V +M +
Sbjct: 305 TVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVK 364
Query: 184 IGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243
P++ TYN L+ G C GRV A+E+L ++ KP+V T+ +M+G C+VG+ +
Sbjct: 365 DRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYK 424
Query: 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303
A+ LL ++ G++P++V++N L +G C+EG LL M + PD ++++ ++N
Sbjct: 425 AVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIIN 484
Query: 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363
K GK A + M+R G +DE +L+ G+C K + + DA + E + K
Sbjct: 485 AFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVC-KVGKTR----DALFILETLVK 539
Query: 364 KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDK 423
+T P + +++ L KG K E L L ++G +P +T+ ++ L G I
Sbjct: 540 MRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599
Query: 424 ALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475
+ +L LM +P+ Y ++I L Q + +A L A GV P
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNH 651
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 210/404 (51%), Gaps = 5/404 (1%)
Query: 70 IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129
I +F+ ++ G + N ++ + + ++ A F + G P+ TF+ ++
Sbjct: 103 ISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNG 162
Query: 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN 189
YC+ N +A + D + G+ PNV T+T L+ LCK+ L A+E+ +QMG G +PN
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPN 222
Query: 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249
+ TYN L+ GLC +GR +A +L ++ ++P+V T+TA++D F KVG+ EA EL N
Sbjct: 223 VVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYN 282
Query: 250 EAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWG 309
I+ V P+V T+ +L NG C G + + LM++ C P+++ Y+TL++G K
Sbjct: 283 VMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSK 342
Query: 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369
++ + IF EM + G + L++G C+ + A +VF +M+ + + D
Sbjct: 343 RVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDV-----AQEVFNQMSSRRAPPD 397
Query: 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429
TY +++ L K ++AL+ + + +T+ +IQ +C GK++ A L
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457
Query: 430 LMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
++ P+ +Y +I+ + ++A +L+ + G +P
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLP 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 201/414 (48%), Gaps = 6/414 (1%)
Query: 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-GLAPN 119
I+ L + I + + + G +WS N ++ E A+ F E S+ G P+
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+TF+ ++ C A +++D M GY P+V T+ +++ LCK G +KEA+EVLD
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239
QM C PN TYN L+ LC +VEEA E+ + + G+ PDV T+ +++ G C
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299
AMEL E +G P+ T+N L + C +G + + +LK M+ C I+Y+
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359
TL++G K K R A IF EM G + N+L+ GLC + +EDA Q+ +
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC-----KSRRVEDAAQLMD 529
Query: 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419
+M + D TY ++ +G +A + G P +T+ +I LC G
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+++ A LL + + +Y+ +I L + K+ +A L+ L+Q P
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP 643
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/431 (28%), Positives = 199/431 (46%), Gaps = 40/431 (9%)
Query: 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----------- 132
S+ DF LL A L ET + F + YG++ + ++F+I+I C+C
Sbjct: 70 SIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVL 129
Query: 133 ------------------------KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168
N +A ++ M +GY PNV + L++ LCK+
Sbjct: 130 GKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKN 189
Query: 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228
G L ALE+L++M + G ++ TYN LL GLCY GR +A ML ++ + PDV T+
Sbjct: 190 GELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTF 249
Query: 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288
TA++D F K G +EA EL E I+ V PN VT+N++ NG C G LM
Sbjct: 250 TALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMAS 309
Query: 289 RNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEK 348
+ C P+ ++Y+TL++G K+ + + +F+ M GF D N+L+ G C +
Sbjct: 310 KGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYC-----QV 364
Query: 349 DLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITF 408
L A +F M + D T+ I++ L + + AL+ E + +
Sbjct: 365 GKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAY 424
Query: 409 NNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468
N +I LC K++KA L + P +Y ++I L + +A L +
Sbjct: 425 NIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKE 484
Query: 469 QGVIPQRKPQD 479
+G+I Q +D
Sbjct: 485 EGIICQMNAED 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/413 (28%), Positives = 216/413 (52%), Gaps = 5/413 (1%)
Query: 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS 120
I+ L + +D+F + + S++DF+ LL A+ + + + + + + G+ N
Sbjct: 57 IRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNL 116
Query: 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQ 180
T +I++ C+C + A + M G+ P++ TF L+N C+ R+ +AL + DQ
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQ 176
Query: 181 MGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240
M +G KPN+ YN ++ GLC +V+ A ++L ++ DG+ PDV TY +++ G C GR
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236
Query: 241 SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYST 300
++A +++ +R + P+V TFN L + KEG + + M +R+ PD ++YS
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 301 LLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEK 360
L+ GL + ++ A +F MV G D + L+ G C + +E ++F +
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC-----KSKKVEHGMKLFCE 351
Query: 361 MTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420
M+++ V + TY I+I+ + K + A + G P IT+N ++ LC GK
Sbjct: 352 MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411
Query: 421 IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
I+KAL++L M ++ +Y+++I + + + DA +Y + QG++P
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMP 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 213/461 (46%), Gaps = 38/461 (8%)
Query: 49 PRSLQAQRFVDRI-KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKF 107
P S+ Q + + K + + E + + + + G FND+++ L + A K
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 108 FSEASSYGLAPNSWTFSIMIRCYCN------KNDFF------------------------ 137
+ G AP+ T+ ++ C D F
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRL 369
Query: 138 -EARKVI-DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC 195
+A+ V+ D + G P+V T+ L+ K G + ALEVL M GCKPN+ +Y
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429
Query: 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255
L+ G C +G+++EAY +L + DGLKP+ + ++ FCK R EA+E+ E +G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 256 VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315
P+V TFN+L +G C+ + LL+ M + + ++Y+TL+N L+ G+I+ A
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549
Query: 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGI 375
+ EMV G +DE NSL++GLC +K A +FEKM + + I
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK-----ARSLFEKMLRDGHAPSNISCNI 604
Query: 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435
+I L + +EA+ + G P +TFN++I LC G+I+ L + +
Sbjct: 605 LINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEG 664
Query: 436 KIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRK 476
P +++ L++ L + YDAC L ++ G +P +
Sbjct: 665 IPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHR 705
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 125/429 (29%), Positives = 201/429 (46%), Gaps = 43/429 (10%)
Query: 68 ERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI 127
+ +D+F + + +V DFN L A+ + E + + S G+A + +T SIMI
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCK 187
C+C A + + GY P+ F L+N LC R+ EALE++D+M +G K
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK 190
Query: 188 PNIQTYNCLLKGLCYVGRVEEAY-----------------------------------EM 212
P + T N L+ GLC G+V +A E+
Sbjct: 191 PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL 250
Query: 213 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK 272
L ++ +K D Y+ ++DG CK G + A L NE +G +++T+NTL G+C
Sbjct: 251 LRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCN 310
Query: 273 EGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERM 332
G G LL+ M KR P+ +++S L++ +K GK+R A + KEM++ G +
Sbjct: 311 AGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTIT 370
Query: 333 MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392
NSL+ G C +++ LE+A Q+ + M K D T+ I+I K + D+ L
Sbjct: 371 YNSLIDGFC-----KENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 393 LHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL-- 450
G I T+T+N ++Q C GK++ A L M P SY +L+ L
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 451 -DQLEKSYD 458
+LEK+ +
Sbjct: 486 NGELEKALE 494
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 224140601 | 535 | predicted protein [Populus trichocarpa] | 0.914 | 0.818 | 0.576 | 1e-150 | |
| 357506669 | 583 | Pentatricopeptide repeat-containing prot | 0.956 | 0.785 | 0.427 | 1e-108 | |
| 212275248 | 558 | uncharacterized protein LOC100191659 [Ze | 0.868 | 0.745 | 0.387 | 1e-87 | |
| 195650415 | 558 | hypothetical protein [Zea mays] | 0.868 | 0.745 | 0.387 | 4e-87 | |
| 115452873 | 545 | Os03g0336000 [Oryza sativa Japonica Grou | 0.862 | 0.757 | 0.380 | 4e-85 | |
| 219885281 | 559 | unknown [Zea mays] gi|414866677|tpg|DAA4 | 0.868 | 0.744 | 0.390 | 2e-83 | |
| 357112338 | 538 | PREDICTED: pentatricopeptide repeat-cont | 0.862 | 0.767 | 0.370 | 2e-83 | |
| 219885451 | 437 | unknown [Zea mays] | 0.845 | 0.926 | 0.393 | 1e-82 | |
| 242041019 | 558 | hypothetical protein SORBIDRAFT_01g03615 | 0.868 | 0.745 | 0.376 | 2e-80 | |
| 125586172 | 523 | hypothetical protein OsJ_10752 [Oryza sa | 0.816 | 0.747 | 0.368 | 4e-80 |
| >gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa] gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/439 (57%), Positives = 330/439 (75%), Gaps = 1/439 (0%)
Query: 41 ESLDLKENPRSLQAQRFVDRIKASPLKERID-IFDSIKKDGTNWSVSDFNDLLMALVMLN 99
ESLD E Q ++ +KA P KER+D I + K+ +++SDFND+LMALV N
Sbjct: 96 ESLDFDEKASKFQVLDLLNAVKALPCKERVDYIVRVLDKEIGFFNISDFNDVLMALVTAN 155
Query: 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFT 159
E + +K +S S Y L PNSWTFSIM+RC+C K D EA++V+D M G++PNV T T
Sbjct: 156 ESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVLDQMMQKGFNPNVATLT 215
Query: 160 ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219
IL+NS CK G+L+ +V + M RIGCKPNIQTYNCLLKG+CYVGR++EA+E++ ++K
Sbjct: 216 ILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELMEDIKKT 275
Query: 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKG 279
++PD+YTYTA+MDGFCKVGRS+EAMELLNEA+E G+ PNVVTFNTL +GY KEG P+KG
Sbjct: 276 TVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDGYAKEGRPLKG 335
Query: 280 VGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRG 339
G+LKLMK+R C+PD ISYSTLL+GLL WGK+ + IF EM G E DER+MNSL+RG
Sbjct: 336 FGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRG 395
Query: 340 LCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399
LC KS +E DL+E AY+VFEKM K+ V + TY +VI+ L KK D+A I+LH + +
Sbjct: 396 LCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQALWVAKKVDDAFINLHQMVRL 455
Query: 400 GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDA 459
G+IPR IT NNVIQALC GK+DKA +L LMYE++KIPSR SYD+LI +L++ E++ A
Sbjct: 456 GYIPRLITINNVIQALCVGGKVDKAFYVLVLMYENSKIPSRMSYDLLIHELNRQERTLGA 515
Query: 460 CALYGAALKQGVIPQRKPQ 478
C +YGAAL +GV+P +KP+
Sbjct: 516 CNVYGAALVRGVVPHKKPR 534
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357506669|ref|XP_003623623.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498638|gb|AES79841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/475 (42%), Positives = 305/475 (64%), Gaps = 17/475 (3%)
Query: 15 TNRRNHNKIPQFNKLVVF--AAASLSTAES----------LDLKENPRSLQAQRFVDRIK 62
T + N+NK F+ + F S S S +D ++ + + V +I
Sbjct: 24 TTKSNNNKTINFHPIKPFIQTTHSFSITNSTTKHTTNNNLVDFQDKTTRSEIKNLVQKIT 83
Query: 63 A-SPLKER----IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLA 117
+ S K + + I D+ + ++SDFN LLMALV+ + + F++ SS+ L
Sbjct: 84 SLSTSKNKTQLLLQILDNTASEFQIQTISDFNHLLMALVIAQKPDFCQTMFTKLSSFHLV 143
Query: 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEV 177
P+S T+SIMIRC+C+KN+ EA++V+ + +NG+ P+ T T+L+NSLCK G++K+A+EV
Sbjct: 144 PDSCTYSIMIRCHCSKNELEEAKRVLFTVLENGFEPDSATITVLINSLCKRGKVKKAMEV 203
Query: 178 LDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237
+ + R G K +Q YNCLL+GL YVGRV+EA E+LM++K + DVY+Y+AVM+G CK
Sbjct: 204 FEFLERKGLKLGVQAYNCLLRGLAYVGRVDEAVEILMDMKTGNIGVDVYSYSAVMNGLCK 263
Query: 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS 297
VGRS+EAMEL +EA+ G+ P+VVTFN L GY +EG M+GVG+LK+MK+ C+ D I+
Sbjct: 264 VGRSDEAMELFDEAVGVGLRPDVVTFNALIEGYSREGREMEGVGVLKMMKEHGCVADLIN 323
Query: 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357
Y T+L+GLLKW + A ++KEMVR GFEVD RMM +L+R LC SW EK LLEDA +V
Sbjct: 324 YKTVLHGLLKWNETVEAFGVYKEMVRIGFEVDSRMMGTLVRRLCKLSWREKGLLEDACEV 383
Query: 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG 417
FEKM ++ V D T +++ L +G+K DEAL++L+ + G+ I F VI+ LCG
Sbjct: 384 FEKMKERGLVVDKRTVEVMVEALFRGEKFDEALVNLNDMVRWGYSLEGIAFEEVIEGLCG 443
Query: 418 EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
+G++D+A+ L L+ + R S+ +L+ +L+ + + A L+G ALK GV+
Sbjct: 444 QGRVDEAVSTLLLLQANGGFLDRVSFGVLVNELNAHGRVFCASFLFGVALKHGVV 498
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212275248|ref|NP_001130560.1| uncharacterized protein LOC100191659 [Zea mays] gi|194689480|gb|ACF78824.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 164/423 (38%), Positives = 254/423 (60%), Gaps = 7/423 (1%)
Query: 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113
A+ RI P++ER+ + D +++D +VSD+ND+L AL + TAV F +
Sbjct: 114 ARDCAKRIMELPVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFR---A 170
Query: 114 YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKE 173
+AP++ +F+ ++C C + EA+ +D M G+ P+V TF+ +V LCK GR+ +
Sbjct: 171 MPVAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTK 230
Query: 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233
A+EVLD M +GC+P I+TYN L+ GLCYVGR+EEA E+L +K+ L PD+YT+T V+D
Sbjct: 231 AMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLD 290
Query: 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--- 290
GFCKVGR+ EA + ++AI G++P T+N L NG+CKEG P+K LL M N
Sbjct: 291 GFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAA 350
Query: 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDL 350
CLPDK S+ +L LL+ G+ A +K M R GFEVD R +++L RGLC + +
Sbjct: 351 CLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASA 410
Query: 351 LEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410
L DA +VF K+ TY ++ + L +G + D A+ L + G+ R + +
Sbjct: 411 LGDAEEVFGKVVASGHEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTD 470
Query: 411 VIQALCGEGKIDKAL-LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469
V++ALC G+ AL +L+ +M +P R +++ L+ +L + + DA +Y AA+K+
Sbjct: 471 VVRALCDRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMTVYAAAVKR 530
Query: 470 GVI 472
GV+
Sbjct: 531 GVV 533
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195650415|gb|ACG44675.1| hypothetical protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/423 (38%), Positives = 253/423 (59%), Gaps = 7/423 (1%)
Query: 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113
A+ RI P++ER+ + D +++D +VSD+ND+L AL + TAV F +
Sbjct: 114 ARDCAKRIMELPVEERVKVLDLLQRDDAALTVSDYNDILSALARAGDHATAVALFR---A 170
Query: 114 YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKE 173
+AP++ +F+ ++C C + EA+ +D M G+ P+V TF+ +V LCK GR+ +
Sbjct: 171 MPVAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTK 230
Query: 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233
A+EVLD M +GC+P I+TYN L+ GLCYVGR+EEA E+L +K+ L PD+YT+T V+D
Sbjct: 231 AMEVLDAMLGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLD 290
Query: 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--- 290
GFCKVGR+ EA + ++AI G++P T+N L NG CKEG P+K LL M N
Sbjct: 291 GFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGXCKEGNPLKAFALLMEMCGNNDAA 350
Query: 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDL 350
CLPDK S+ +L LL+ G+ A +K M R GFEVD R +++L RGLC + +
Sbjct: 351 CLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASA 410
Query: 351 LEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410
L DA +VF K+ TY ++ + L +G + D A+ L + G+ R + +
Sbjct: 411 LGDAEEVFGKVVASGHEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTD 470
Query: 411 VIQALCGEGKIDKAL-LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469
V++ALC G+ AL +L+ +M +P R +++ L+ +L + + DA +Y AA+K+
Sbjct: 471 VVRALCDRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMTVYAAAVKR 530
Query: 470 GVI 472
GV+
Sbjct: 531 GVV 533
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115452873|ref|NP_001050037.1| Os03g0336000 [Oryza sativa Japonica Group] gi|108708021|gb|ABF95816.1| expressed protein [Oryza sativa Japonica Group] gi|113548508|dbj|BAF11951.1| Os03g0336000 [Oryza sativa Japonica Group] gi|125543773|gb|EAY89912.1| hypothetical protein OsI_11461 [Oryza sativa Indica Group] gi|215712300|dbj|BAG94427.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 250/415 (60%), Gaps = 2/415 (0%)
Query: 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119
RI P++ER+ + D +++D +VSD+ND+L AL M + ++AV F G+ P+
Sbjct: 103 RIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPD 162
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+ +++ ++C C K EA++ +D M G+ P V TF+ +V LCK GR+ A+EV D
Sbjct: 163 AQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFD 222
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKV 238
M +GC+P I+TYN L+ GLCYVGR+EEA ++L +K + PD+YT+T V+DGFCKV
Sbjct: 223 TMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKV 282
Query: 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL-KLMKKRNCLPDKIS 297
GR++EA + ++A+ G++P + T+N L NG+CKEG P+K LL ++ C PD+IS
Sbjct: 283 GRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRIS 342
Query: 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357
+S +L LL+ G+ A +K M R GFE D R +++L RGLC + L DA +V
Sbjct: 343 FSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADAREV 402
Query: 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG 417
F K+ TY ++ + L +G + D A+ L G+ R + +V++ALC
Sbjct: 403 FGKLVASGHEPVSYTYCLMAQALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCE 462
Query: 418 EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
G+ AL +L L+ +P R ++D L+ +L + + DA A+Y AA+K+GV+
Sbjct: 463 RGRARDALRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRGVL 517
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219885281|gb|ACL53015.1| unknown [Zea mays] gi|414866677|tpg|DAA45234.1| TPA: hypothetical protein ZEAMMB73_414823 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 254/423 (60%), Gaps = 7/423 (1%)
Query: 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113
A+ RI P++ER+ + D + +D +VSD+ND+L AL + TAV F +
Sbjct: 115 ARDCAKRIMELPVEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFR---A 171
Query: 114 YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKE 173
+AP++ +F+ ++C C + EA+ +D M G+ P+V TF+ +V LCK GR+ +
Sbjct: 172 MPVAPDAHSFATAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTK 231
Query: 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233
A+EVLD M +GC+P I+TYN L+ GLCYVGR+EEA E+L +K+ L PD+YT+T V+D
Sbjct: 232 AMEVLDAMCGLGCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLD 291
Query: 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--- 290
GFCKVGR+ EA + ++AI G++P T+N L NG+CKEG P+K LL M N
Sbjct: 292 GFCKVGRTEEATAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAA 351
Query: 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDL 350
CLPDK S+ +L LL+ G+ A +K M R GFEVD R +++L RGLC + +
Sbjct: 352 CLPDKTSFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASA 411
Query: 351 LEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410
L DA +VF K+ TY ++ + L +G + D A+ L + G+ R + +
Sbjct: 412 LGDAEEVFAKVVASGHEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTD 471
Query: 411 VIQALCGEGKIDKAL-LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469
V++ALC G+ AL +L+ +M +P R +++ L+ +L + + DA A+Y AA+K+
Sbjct: 472 VVRALCDRGRARDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMAVYAAAVKR 531
Query: 470 GVI 472
GV+
Sbjct: 532 GVV 534
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357112338|ref|XP_003557966.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 253/416 (60%), Gaps = 3/416 (0%)
Query: 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAP 118
RI + P++ER+ + D +++D ++SD+ND+L AL + ++A+ F G +AP
Sbjct: 97 RIMSLPMEERVKVLDLLQRDDAALTISDYNDILSALARGGDYDSAMALFRALEPNGTVAP 156
Query: 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVL 178
++ +F+I ++C+C K EA++ +D M GY P V+ F+ +V LCK GR+ A+EVL
Sbjct: 157 DAHSFAIAVQCFCRKGAPDEAKETLDEMLARGYLPTVSAFSAVVGCLCKRGRVTRAMEVL 216
Query: 179 DQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTAVMDGFCK 237
D M +GC+P I+TYN L+ GLCYVGR+E+A ++L +K+ + D+YT+T V+DGFCK
Sbjct: 217 DAMRGVGCEPTIRTYNSLIGGLCYVGRLEDARDLLNKLKDSPKQTADIYTFTIVLDGFCK 276
Query: 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL-KLMKKRNCLPDKI 296
VGR+++AM + +A+ G++P + T+N L NG+CKEG +K LL ++ C PDKI
Sbjct: 277 VGRTDDAMAIFEDAVRTGLSPTIFTYNALLNGHCKEGHLLKAYNLLMEMCDNETCPPDKI 336
Query: 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQ 356
S+S +L LL+ G+I A FK M G E D R +++L RGLC + + L DA +
Sbjct: 337 SFSIVLPALLRAGEISAAWQTFKRMEHAGLEADGRALDTLTRGLCRQCAADISALRDAKE 396
Query: 357 VFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALC 416
VF K+ TY ++ + L +G + D A+ L G+ R + +V++ALC
Sbjct: 397 VFGKLVSSGHEPVSYTYCLMAQALARGGEVDAAVAILDDMARKGYALRKRAYTDVVRALC 456
Query: 417 GEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
+ +A+ +L ++ +P R ++D L+ +L + + DA A+Y AA+K+GV+
Sbjct: 457 DRSRTSEAVRVLAVVIARDFVPGRNAFDALLGELSRQGRWPDAMAVYAAAVKRGVV 512
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219885451|gb|ACL53100.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/412 (39%), Positives = 250/412 (60%), Gaps = 7/412 (1%)
Query: 65 PLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124
P++ER+ + D + +D +VSD+ND+L AL + TAV F + +AP++ +F+
Sbjct: 4 PVEERVKVLDLLPRDDAALTVSDYNDILSALARAGDHATAVALFR---AMPVAPDAHSFA 60
Query: 125 IMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184
++C C + EA+ +D M G+ P+V TF+ +V LCK GR+ +A+EVLD M +
Sbjct: 61 TAVQCLCRQGAPDEAKLALDEMVARGFRPSVATFSAVVGCLCKRGRVTKAMEVLDAMCGL 120
Query: 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244
GC+P I+TYN L+ GLCYVGR+EEA E+L +K+ L PD+YT+T V+DGFCKVGR+ EA
Sbjct: 121 GCEPTIRTYNSLVGGLCYVGRLEEALELLKKLKDSPLTPDIYTFTIVLDGFCKVGRTEEA 180
Query: 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN---CLPDKISYSTL 301
+ ++AI G++P T+N L NG+CKEG P+K LL M N CLPDK S+ +
Sbjct: 181 TAIFHDAIGMGLSPTTFTYNALLNGHCKEGNPLKAFALLMEMCGNNDAACLPDKTSFGIV 240
Query: 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361
L LL+ G+ A +K M R GFEVD R +++L RGLC + + L DA +VF K+
Sbjct: 241 LTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLARGLCRRCATDASALGDAEEVFAKV 300
Query: 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421
TY ++ + L +G + D A+ L + G+ R + +V++ALC G+
Sbjct: 301 VASGHEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDVVRALCDRGRA 360
Query: 422 DKAL-LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
AL +L+ +M +P R +++ L+ +L + + DA A+Y AA+K+GV+
Sbjct: 361 RDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMAVYAAAVKRGVV 412
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242041019|ref|XP_002467904.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor] gi|241921758|gb|EER94902.1| hypothetical protein SORBIDRAFT_01g036150 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 254/422 (60%), Gaps = 6/422 (1%)
Query: 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS 113
A+ RI P++ER+ + D + +D +VSD+ND+L AL + TAV F +
Sbjct: 115 ARDCAKRIMELPVEERVKVLDLLPRDDDALTVSDYNDILSALARAGDHATAVALFR---A 171
Query: 114 YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKE 173
+AP++ +F+ ++C C + EA+ ID M G+ P+V TF+ +V LCK GR+ +
Sbjct: 172 MPVAPDAQSFATAVQCLCRQGAPDEAKLAIDEMVARGFRPSVATFSAVVGCLCKRGRVTK 231
Query: 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233
A+EV D M +GC+P I++YN L+ GLCYVGR+EEA ++L +K+ + PD+YT+T V+D
Sbjct: 232 AMEVFDAMRALGCEPTIRSYNSLVGGLCYVGRLEEALDLLNKLKDSPMTPDIYTFTIVLD 291
Query: 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--C 291
GFCKVGR+ EA + ++AI G++P + T+N L NG+CKEG P+K LL M + C
Sbjct: 292 GFCKVGRTEEATAIFHDAIGMGLSPTIFTYNALLNGHCKEGNPLKAFALLMEMCGNDAAC 351
Query: 292 LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLL 351
PDKIS+ +L LL+ G+ A +K M R GFEVD R +++L+RGL + + L
Sbjct: 352 PPDKISFGIVLTALLRAGETSAAWQTYKRMERAGFEVDGRALDTLVRGLFRRCATDVSAL 411
Query: 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNV 411
DA +VF K+ TY ++ + L +G + D A+ L + G+ R + +V
Sbjct: 412 GDAKEVFAKVVASGHEPVSYTYCLMAQALARGGEVDAAVALLEDMVRKGYALRKRAYTDV 471
Query: 412 IQALCGEGK-IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470
++ALC G+ +D +L+ +M +P R +++ L+ +L + + DA A+Y AA+K+G
Sbjct: 472 VRALCDRGRALDALQVLVLVMIVRDFVPGRNAFEALLGELSRQGRWADAMAVYAAAVKRG 531
Query: 471 VI 472
V+
Sbjct: 532 VV 533
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125586172|gb|EAZ26836.1| hypothetical protein OsJ_10752 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/415 (36%), Positives = 241/415 (58%), Gaps = 24/415 (5%)
Query: 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119
RI P++ER+ + D +++D +VSD+ND+L AL M + ++AV F G+ P+
Sbjct: 103 RIMGLPVEERVKVLDLLQRDDGALTVSDYNDILSALAMAGDHDSAVALFRALRPNGVTPD 162
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+ +++ ++C C K EA++ +D M G+ P V TF+ +V LCK GR+ A+EV D
Sbjct: 163 AQSYATAVQCLCRKGAPDEAKEALDEMVARGFRPTVATFSAVVGCLCKRGRVTRAMEVFD 222
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKV 238
M +GC+P I+TYN L+ GLCYVGR+EEA ++L +K + PD+YT+T V+DGFCKV
Sbjct: 223 TMRAVGCEPTIRTYNSLIGGLCYVGRLEEALDLLNKLKESPKQTPDIYTFTIVLDGFCKV 282
Query: 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL-KLMKKRNCLPDKIS 297
GR++EA + ++A+ G++P + T+N L NG+CKEG P+K LL ++ C PD+IS
Sbjct: 283 GRTDEATPIFHDAVRNGLSPTIFTYNALLNGHCKEGNPLKAYSLLMEMCGNAACPPDRIS 342
Query: 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357
+S +L LL+ G+ A +K M R GFE D R +++L RGLC + L DA +
Sbjct: 343 FSIVLQALLRAGETSAAWQAYKRMERAGFEADGRALDTLARGLCRQCAANVAALADARE- 401
Query: 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG 417
L +G + D A+ L G+ R + +V++ALC
Sbjct: 402 ---------------------ALARGGEVDAAVSLLGEMARRGYALRKRAYTDVVRALCE 440
Query: 418 EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
G+ AL +L L+ +P R ++D L+ +L + + DA A+Y AA+K+GV+
Sbjct: 441 RGRARDALRVLALVIARDFVPGRNAFDALLGELARQGRWPDAMAVYAAAVKRGVL 495
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.853 | 0.746 | 0.282 | 6.7e-49 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.841 | 0.673 | 0.282 | 9.8e-48 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.851 | 0.809 | 0.285 | 1.1e-46 | |
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.837 | 0.455 | 0.287 | 1.6e-46 | |
| TAIR|locus:2089388 | 507 | AT3G16710 [Arabidopsis thalian | 0.791 | 0.747 | 0.288 | 3.8e-46 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.778 | 0.510 | 0.305 | 4e-45 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.832 | 0.757 | 0.285 | 4.4e-45 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.851 | 0.541 | 0.294 | 6.7e-45 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.801 | 0.514 | 0.282 | 1.4e-44 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.782 | 0.491 | 0.286 | 1.6e-44 |
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 117/414 (28%), Positives = 212/414 (51%)
Query: 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119
R++ L + ID+F + K S+ DFN LL A+V L + + + + G+ +
Sbjct: 60 RLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 119
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+TF+I+I C+C A ++ M GY P+ T LVN C+ R+ +A+ ++D
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239
+M IG KP+I YN ++ LC RV +A++ ++ G++P+V TYTA+++G C
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSS 239
Query: 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYS 299
R ++A LL++ I++ +TPNV+T++ L + + K G + PD ++YS
Sbjct: 240 RWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS 299
Query: 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359
+L+NGL +I A +F MV G D N+L+ G C + +ED ++F
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC-----KAKRVEDGMKLFR 354
Query: 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419
+M+++ V++ TY +I+ + D+A G P T+N ++ LC G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414
Query: 420 KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+++KAL++ M + +Y +I + + K +A +L+ + +G+ P
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKP 468
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 116/411 (28%), Positives = 200/411 (48%)
Query: 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW 121
KA + + + D + + V +N +L +L + + A++ P+
Sbjct: 184 KAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM 181
T++I+I C + A K++D M D G P+V T+ +LVN +CK GRL EA++ L+ M
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 182 GRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241
GC+PN+ T+N +L+ +C GR +A ++L ++ G P V T+ +++ C+ G
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360
Query: 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTL 301
A+++L + + G PN +++N L +G+CKE R C PD ++Y+T+
Sbjct: 361 GRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420
Query: 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361
L L K GK+ AV I ++ G N+++ GL K A ++ ++M
Sbjct: 421 LTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK-----AIKLLDEM 475
Query: 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421
K D TY ++ L + K DEA+ H MG P +TFN+++ LC +
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 422 DKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472
D+A+ L M P+ TSY +LI L + +A L +G++
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 118/413 (28%), Positives = 215/413 (52%)
Query: 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS 120
I+ L + +D+F + + S++DF+ LL A+ + + + + + + G+ N
Sbjct: 57 IRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNL 116
Query: 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQ 180
T +I++ C+C + A + M G+ P++ TF L+N C+ R+ +AL + DQ
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQ 176
Query: 181 MGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240
M +G KPN+ YN ++ GLC +V+ A ++L ++ DG+ PDV TY +++ G C GR
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236
Query: 241 SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYST 300
++A +++ +R + P+V TFN L + KEG R+ PD ++YS
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296
Query: 301 LLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEK 360
L+ GL + ++ A +F MV G D + L+ G C KS +K +E ++F +
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC-KS--KK--VEHGMKLFCE 351
Query: 361 MTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420
M+++ V + TY I+I+ + K + A + G P IT+N ++ LC GK
Sbjct: 352 MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411
Query: 421 IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
I+KAL++L M ++ +Y+++I + + + DA +Y + QG++P
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMP 464
|
|
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 1.6e-46, P = 1.6e-46
Identities = 118/411 (28%), Positives = 212/411 (51%)
Query: 66 LKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWT 122
L++ + +FD + K+ T N SVS ++ L+ L + E A + G P++ T
Sbjct: 246 LRDALKVFDVMSKEVTCAPN-SVS-YSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303
Query: 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG 182
++++I+ C++ +A + D M G PNV T+T+L++ LC+ G+++EA V +M
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363
Query: 183 RIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242
+ P++ TYN L+ G C GRV A+E+L ++ KP+V T+ +M+G C+VG+
Sbjct: 364 KDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPY 423
Query: 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLL 302
+A+ LL ++ G++P++V++N L +G C+EG + PD ++++ ++
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAII 483
Query: 303 NGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362
N K GK A + M+R G +DE +L+ G+C K + +D L + E +
Sbjct: 484 NAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVC-KVGKTRDALF----ILETLV 538
Query: 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKID 422
K +T P + +++ L KG K E L L ++G +P +T+ ++ L G I
Sbjct: 539 KMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDIT 598
Query: 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+ +L LM +P+ Y ++I L Q + +A L A GV P
Sbjct: 599 GSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649
|
|
| TAIR|locus:2089388 AT3G16710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 111/385 (28%), Positives = 197/385 (51%)
Query: 90 DLLMALVMLNEQETAVK-FFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148
+++M V L+ Q F + G P+ TF+ ++ YC+ N +A + D +
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181
Query: 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEE 208
G+ PNV T+T L+ LCK+ L A+E+ +QMG G +PN+ TYN L+ GLC +GR +
Sbjct: 182 MGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGD 241
Query: 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268
A +L ++ ++P+V T+TA++D F KVG+ EA EL N I+ V P+V T+ +L N
Sbjct: 242 AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301
Query: 269 GYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328
G C G C P+++ Y+TL++G K ++ + IF EM + G
Sbjct: 302 GLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA 361
Query: 329 DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDE 388
+ L++G C+ D+ A +VF +M+ + + D TY +++ L K ++
Sbjct: 362 NTITYTVLIQGYCLVG--RPDV---AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEK 416
Query: 389 ALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448
AL+ + + +T+ +IQ +C GK++ A L ++ P+ +Y +I+
Sbjct: 417 ALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMIS 476
Query: 449 KLDQLEKSYDACALYGAALKQGVIP 473
+ ++A +L+ + G +P
Sbjct: 477 GFCRRGLIHEADSLFKKMKEDGFLP 501
|
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 4.0e-45, P = 4.0e-45
Identities = 116/380 (30%), Positives = 190/380 (50%)
Query: 88 FNDLLMALVMLNEQETAVKFFSE-ASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCM 146
FN L+ V + A S+ +SYG+ P+ T++ +I Y + A +V+ M
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415
Query: 147 FDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206
+ G PNV ++TILV+ CK G++ EA VL++M G KPN +NCL+ C R+
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475
Query: 207 EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL 266
EA E+ + G KPDVYT+ +++ G C+V A+ LL + I GV N VT+NTL
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535
Query: 267 FNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326
N + + G + D+I+Y++L+ GL + G++ A S+F++M+R G
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKT 386
N L+ GLC ++E+A + ++M + S D T+ +I L + +
Sbjct: 596 APSNISCNILINGLCRSG-----MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDML 446
++ L G P T+TFN ++ LC G + A LLL E +P+ ++ +L
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSIL 710
Query: 447 ITKLDQLEKSYDACALYGAA 466
+ + E + D Y AA
Sbjct: 711 LQSIIPQE-TLDRRRFYNAA 729
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| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 116/407 (28%), Positives = 201/407 (49%)
Query: 70 IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129
I++ D ++ G + + N L+ ++ A F + G P+ TF+ +I
Sbjct: 92 INLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLING 151
Query: 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN 189
+C N EA +++ M + G P+V +T +++SLCK+G + AL + DQM G +P+
Sbjct: 152 FCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPD 211
Query: 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249
+ Y L+ GLC GR +A +L + +KPDV T+ A++D F K G+ +A EL N
Sbjct: 212 VVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYN 271
Query: 250 EAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLLNGLLKWG 309
E I + PN+ T+ +L NG+C EG + C PD ++Y++L+NG K
Sbjct: 272 EMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCK 331
Query: 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369
K+ A+ IF EM + G + +L++G + ++ A +VF M + +
Sbjct: 332 KVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG--KPNV---AQEVFSHMVSRGVPPN 386
Query: 370 PGTYGIVIRTLGKGKKTDEALIHLH--HAIEM-GHIPRTITFNNVIQALCGEGKIDKALL 426
TY +++ L K +AL+ EM G P T+N ++ LC GK++KAL+
Sbjct: 387 IRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALM 446
Query: 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+ M + +Y ++I + + K +A L+ + +GV P
Sbjct: 447 VFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKP 493
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| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 6.7e-45, P = 6.7e-45
Identities = 122/414 (29%), Positives = 195/414 (47%)
Query: 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-GLAPN 119
I+ L + I + + + G +WS N ++ E A+ F E S+ G P+
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
+TF+ ++ C A +++D M GY P+V T+ +++ LCK G +KEA+EVLD
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239
QM C PN TYN L+ LC +VEEA E+ + + G+ PDV T+ +++ G C
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYS 299
AMEL E +G P+ T+N L + C +G C I+Y+
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359
TL++G K K R A IF EM G + N+L+ GLC KS +EDA Q+ +
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC-KSRR----VEDAAQLMD 529
Query: 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG 419
+M + D TY ++ +G +A + G P +T+ +I LC G
Sbjct: 530 QMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAG 589
Query: 420 KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473
+++ A LL + + +Y+ +I L + K+ +A L+ L+Q P
Sbjct: 590 RVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAP 643
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.4e-44, P = 1.4e-44
Identities = 110/389 (28%), Positives = 193/389 (49%)
Query: 71 DIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY 130
++F + + + +V +N L+ + A+ F + + G PN T++ +I Y
Sbjct: 191 NVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250
Query: 131 CNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI 190
C + K++ M G PN+ ++ +++N LC+ GR+KE VL +M R G +
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310
Query: 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250
TYN L+KG C G +A M + GL P V TYT+++ CK G N AME L++
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370
Query: 251 AIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLLNGLLKWGK 310
RG+ PN T+ TL +G+ ++G P ++Y+ L+NG GK
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGK 430
Query: 311 IRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP 370
+ A+++ ++M G D +++L G C +S++ +++A +V +M +K D
Sbjct: 431 MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC-RSYD----VDEALRVKREMVEKGIKPDT 485
Query: 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFL 430
TY +I+ + ++T EA + +G P T+ +I A C EG ++KAL L
Sbjct: 486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Query: 431 MYEHAKIPSRTSYDMLITKLDQLEKSYDA 459
M E +P +Y +LI L++ ++ +A
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREA 574
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| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 1.6e-44, P = 1.6e-44
Identities = 109/380 (28%), Positives = 190/380 (50%)
Query: 68 ERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI 127
E ++F + G + +S FN LL L + + K + G+ PN +T+++ I
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCK 187
+ C + + A +++ C+ + G P+V T+ L+ LCK+ + +EA L +M G +
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE 318
Query: 188 PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247
P+ TYN L+ G C G V+ A ++ + +G PD +TY +++DG C G +N A+ L
Sbjct: 319 PDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALAL 378
Query: 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPXXXXXXXXXXXXRNCLPDKISYSTLLNGLLK 307
NEA+ +G+ PNV+ +NTL G +G + +P+ +++ L+NGL K
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCK 438
Query: 308 WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV 367
G + A + K M+ G+ D N L+ G S + K +E+A ++ + M
Sbjct: 439 MGCVSDADGLVKVMISKGYFPDIFTFNILIHGY---STQLK--MENALEILDVMLDNGVD 493
Query: 368 TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLL 427
D TY ++ L K K ++ + +E G P TFN ++++LC K+D+AL L
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGL 553
Query: 428 LFLMYEHAKIPSRTSYDMLI 447
L M + P ++ LI
Sbjct: 554 LEEMKNKSVNPDAVTFGTLI 573
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00161314 | hypothetical protein (535 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 6e-20
Identities = 81/365 (22%), Positives = 146/365 (40%), Gaps = 75/365 (20%)
Query: 163 NSLCKSGRLKEALEVLDQMGRIG---------------CK-----------------PNI 190
N L + GR+K+ +++L+ M + G CK P +
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437
Query: 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250
T+N L+ ++ A +L V+ GLK D YT ++ K G+ + E+ +E
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 251 AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310
+ GV NV TF L +G + G K G +M+ +N PD++ ++ L++ + G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 311 IRPAVSIFKEM--------------------------VRFGFEVDERMMNSLLRG----- 339
+ A + EM V EV + + ++G
Sbjct: 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
Query: 340 -LCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398
+ + S +K + A +++ M KK D + ++ G D+A L A +
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 399 MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI----PSRTSYDMLITKL---D 451
G T+++++++ A KAL L YE K P+ ++ + LIT L +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALEL----YEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 452 QLEKS 456
QL K+
Sbjct: 734 QLPKA 738
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-18
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 223 PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK 272
PDV TY ++DG+CK G+ EA++L NE +RG+ PNV T++ L +G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 97/435 (22%), Positives = 183/435 (42%), Gaps = 46/435 (10%)
Query: 67 KERIDIFDSIKKDGTNWSVSDFNDLL-----MALVMLNEQETAVKFFSEASSYGLAPNSW 121
E ID ++ + +DG + D DLL L+ +++ A KFF ++
Sbjct: 371 PEYIDAYNRLLRDG---RIKDCIDLLEDMEKRGLLDMDKIYHA-KFFKACKKQRAVKEAF 426
Query: 122 TFSIMIR-------------CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168
F+ +IR C + D A +V+ + + G + +T L+++ KS
Sbjct: 427 RFAKLIRNPTLSTFNMLMSVC-ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEM--LMNVKNDGLKPDVY 226
G++ EV +M G + N+ T+ L+ G G+V +A+ +M KN +KPD
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRV 543
Query: 227 TYTAVMDGFCKVGRSNEAMELLNE--AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLK 284
+ A++ + G + A ++L E A + P+ +T L G + + +
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 285 LMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKS 344
++ + N Y+ +N + G A+SI+ +M + G + DE ++L+
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV-----DV 658
Query: 345 WEEKDLLEDAYQVFEKMTKKVSVTDPGT--YGIVIRTLGKGKKTDEALIHLHHAIE-MGH 401
L+ A+++ + + GT Y ++ K +AL L+ I+ +
Sbjct: 659 AGHAGDLDKAFEILQDA--RKQGIKLGTVSYSSLMGACSNAKNWKKAL-ELYEDIKSIKL 715
Query: 402 IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT---KLDQLEKSYD 458
P T N +I ALC ++ KAL +L M P+ +Y +L+ + D + D
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 459 ACALYGAALKQGVIP 473
L A + G+ P
Sbjct: 776 ---LLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 2e-16
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 153 PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201
P+V T+ L++ CK G+++EAL++ ++M + G KPN+ TY+ L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 53/236 (22%), Positives = 105/236 (44%), Gaps = 1/236 (0%)
Query: 111 ASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170
A ++ + P+ T +++ N A++V + + +TI VNS + G
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTA 230
AL + D M + G KP+ ++ L+ + G +++A+E+L + + G+K +Y++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290
+M +A+EL + + P V T N L C+ K + +L MK+
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWE 346
P+ I+YS LL + + + + G + + M + GLC++ +E
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFE 804
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 9e-16
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 188 PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237
P++ TYN L+ G C G+VEEA ++ +K G+KP+VYTY+ ++DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 71/356 (19%), Positives = 147/356 (41%), Gaps = 17/356 (4%)
Query: 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVID 144
S ++ L+ A + L + S G P+ + + ++ + +AR++ D
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 145 CMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204
M + N+ ++ ++ L +G +EA + +M G +T+ +L+ +G
Sbjct: 183 EMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264
++ V G+ D + A++D + K G +A + + E+ V +N
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWN 294
Query: 265 TLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324
++ GY G + + L M+ D+ ++S ++ + + A ++R
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 325 GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384
GF +D + N+ L L K W +EDA VF++M +K + ++ +I G
Sbjct: 355 GFPLD-IVANTALVDLYSK-W---GRMEDARNVFDRMPRKNLI----SWNALIAGYGNHG 405
Query: 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR 440
+ +A+ I G P +TF V+ A G ++ + M E+ +I R
Sbjct: 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 6e-14
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 258 PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307
P+VVT+NTL +GYCK+G + + L MKKR P+ +YS L++GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 8e-14
Identities = 39/172 (22%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
Query: 102 ETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161
+ A+ + + G+ P+ FS ++ + D +A +++ G +++ L
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221
+ + + K+ALE+ + + I +P + T N L+ LC ++ +A E+L +K GL
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273
P+ TY+ ++ + ++ ++LL++A E G+ PN+V + G C
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI-TGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 68/321 (21%), Positives = 127/321 (39%), Gaps = 22/321 (6%)
Query: 72 IFDSI-KKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY 130
+FD + +++ +W ++ LV A F E G TF +M+R
Sbjct: 180 LFDEMPERNLASW-----GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234
Query: 131 CNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI 190
+++ C+ G + L++ K G +++A V D M
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTT 290
Query: 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250
+N +L G G EEA + +++ G+ D +T++ ++ F ++ A +
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350
Query: 251 AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310
I G ++V L + Y K G + M ++N IS++ L+ G G+
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGR 406
Query: 311 IRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP 370
AV +F+ M+ G + ++L C S L E +++F+ M+ + P
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYS----GLSEQGWEIFQSMS-ENHRIKP 460
Query: 371 GT--YGIVIRTLGKGKKTDEA 389
Y +I LG+ DEA
Sbjct: 461 RAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.7 bits (141), Expect = 2e-11
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM 181
G P+V T+ L++ LC++GR+ EA+E+LD+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167
P+ T++ +I YC K EA K+ + M G PNV T++IL++ LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 57/239 (23%), Positives = 97/239 (40%), Gaps = 20/239 (8%)
Query: 156 TTFTILVNSL----CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211
++ ++ N+L K + +ALEV + ++ ++ ++ GL R EA
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALI 476
Query: 212 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC 271
+ LKP+ T A + ++G E+ + G+ + N L + Y
Sbjct: 477 FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535
Query: 272 KEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER 331
+ G +K D +S++ LL G + GK AV +F MV G DE
Sbjct: 536 RCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 332 MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-DPGTYGIVIRTLGKGKKTDEA 389
SLL C +S ++ + F M +K S+T + Y V+ LG+ K EA
Sbjct: 591 TFISLLCA-CSRS----GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 80/345 (23%), Positives = 153/345 (44%), Gaps = 27/345 (7%)
Query: 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI-----MIRCYCNKNDFFEARKVID 144
D +AL L E + AV+ S S L+ + + M+ + + A V
Sbjct: 87 DAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFG 145
Query: 145 CMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204
M + ++ ++ +LV K+G EAL + +M G +P++ T+ C+L+ +
Sbjct: 146 KMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201
Query: 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264
+ E+ +V G + DV A++ + K G A + + R + +++N
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWN 257
Query: 265 TLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324
+ +GY + G ++G+ L M++ + PD ++ +++++ G R + +V+
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 325 GFEVDERMMNSLLRG-LCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383
GF VD + NSL++ L + SW E A +VF +M K D ++ +I K
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGE------AEKVFSRMETK----DAVSWTAMISGYEKN 367
Query: 384 KKTDEALIHLHHAIEM-GHIPRTITFNNVIQALCGEGKIDKALLL 427
D+AL + +E P IT +V+ A G +D + L
Sbjct: 368 GLPDKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 67/331 (20%), Positives = 131/331 (39%), Gaps = 45/331 (13%)
Query: 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA 174
G+ P+ +TF ++R D R+V + G+ +V L+ K G + A
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG 234
V D+M R C ++N ++ G G E E+ ++ + PD+ T T+V+
Sbjct: 242 RLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 235 FCKVGRSNEAMELLNEAIERGV-------------------------------TPNVVTF 263
+G E+ ++ G T + V++
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357
Query: 264 NTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323
+ +GY K G P K + LM++ N PD+I+ +++L+ G + V + + R
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 324 FGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383
G + N+L+ + + + ++ A +VF + +K D ++ +I L
Sbjct: 418 KGLISYVVVANALI-----EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLN 468
Query: 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414
+ EALI + + P ++T + A
Sbjct: 469 NRCFEALIFFRQML-LTLKPNSVTLIAALSA 498
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 4e-09
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250
GLKPDV TY ++DG C+ GR +EA+ELL+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 293 PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341
PD ++Y+TL++G K GK+ A+ +F EM + G + + + L+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 50/237 (21%), Positives = 98/237 (41%), Gaps = 40/237 (16%)
Query: 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143
+ +N +L + E A+ + E G++ + +TFSIMIR + A++
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203
+ G+ ++ T LV+ K GR+++A V D+M R N+ ++N
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN--------- 395
Query: 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTF 263
A++ G+ GR +A+E+ I GV PN VTF
Sbjct: 396 --------------------------ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 264 NTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PDKISYSTLLNGLLKWGKIRPAVSIFK 319
+ + G +G + + M + + + P + Y+ ++ L + G + A ++ +
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 4e-07
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEML 213
G KP++ TYN L+ GLC GRV+EA E+L
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWT 122
A L + +I +K G ++ L+ A + A++ + + S L P T
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG 182
+ +I C N +A +V+ M G PN T++IL+ + + L++L Q
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 183 RIGCKPNIQTYNCLLKGLC 201
G KPN+ C+ GLC
Sbjct: 782 EDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 254 RGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK 287
+G+ P+VVT+NTL +G C+ G + V LL M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 9/203 (4%)
Query: 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD 179
SWT +I N FEA M PN T +++ + G L E+
Sbjct: 457 SWT--SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 180 QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239
+ R G + N LL GR+ A+ N + DV ++ ++ G+ G
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSH----EKDVVSWNILLTGYVAHG 568
Query: 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK-KRNCLPDKISY 298
+ + A+EL N +E GV P+ VTF +L + G +G+ M+ K + P+ Y
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 299 STLLNGLLKWGKIRPAVSIFKEM 321
+ +++ L + GK+ A + +M
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV 260
TY ++DG CK GR EA+EL E ERG+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 40/176 (22%), Positives = 70/176 (39%), Gaps = 45/176 (25%)
Query: 73 FDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132
F+S +KD +W N LL V + AV+ F
Sbjct: 547 FNSHEKDVVSW-----NILLTGYVAHGKGSMAVELF------------------------ 577
Query: 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM-GRIGCKPNIQ 191
+ M ++G +P+ TF L+ + +SG + + LE M + PN++
Sbjct: 578 -----------NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247
Y C++ L G++ EAY + + PD + A+++ C++ R E EL
Sbjct: 627 HYACVVDLLGRAGKLTEAYNF---INKMPITPDPAVWGALLNA-CRIHRHVELGEL 678
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132
+N L+ + E A+K F+E G+ PN +T+SI+I C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI 190
T+ L++ LCK+GR++EALE+ +M G +P++
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGC 186
T+ L++ CK+G+L+EALE+ +M G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGV 256
TY +++ G+CK G+ EA+EL E E+GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCM 146
GL P+ T++ +I C EA +++D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225
TYN L+ GLC GRVEEA E+ +K G++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP- 223
LC G+L++AL++L+ M + + Y L + LC R E + +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283
V A++ F + G A + + ER ++ ++N L GY K G + + L
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 284 KLMKKRNCLPDKISYSTLLN---GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL 337
M PD ++ +L G+ + R + +VRFGFE+D ++N+L+
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR---EVHAHVVRFGFELDVDVVNALI 229
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC 291
VT+N+L +GYCK G + + L K MK++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKP 188
+ T+ L+ +L K+G AL VL++M G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330
++Y+TL++GL K G++ A+ +FKEM G E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326
++Y++L++G K GK+ A+ +FKEM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 5e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD 294
VT+NTL +G CK G + + L K MK+R PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 403 PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447
P +T+N +I C +GK+++AL L M + P+ +Y +LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 7e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 289 RNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322
+ PD ++Y+TL++GL + G++ AV + EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV 155
T++ +I C EA ++ M + G P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTP 258
+ TY A++ K G + A+ +L E G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 333 MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK 382
N+L+ G C +K +E+A ++F +M K+ + TY I+I L K
Sbjct: 6 YNTLIDGYC-----KKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.02 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.8 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.69 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.66 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.44 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.43 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.36 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.3 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.24 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.16 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.11 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.09 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.06 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.91 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.83 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.52 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.41 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.23 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.21 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.2 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.01 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.66 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.62 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.51 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.49 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.45 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.25 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.06 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.96 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.81 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.39 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.36 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.29 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.12 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.1 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.08 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.43 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.4 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.39 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.35 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.24 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.19 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.04 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.61 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.49 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.27 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.11 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.92 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.61 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.52 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.97 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.73 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.98 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.39 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.26 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.62 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.53 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.39 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.14 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.91 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.69 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 86.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.23 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.6 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 85.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.94 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.77 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.71 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.57 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.12 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.89 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.54 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.37 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.05 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.57 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.54 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.42 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.35 | |
| cd00280 | 200 | TRFH Telomeric Repeat binding Factor or TTAGGG Rep | 81.48 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.39 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.98 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.77 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=494.47 Aligned_cols=419 Identities=19% Similarity=0.323 Sum_probs=402.0
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGT-NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (479)
+.....+...++.|++++|+++|+.|.+.|+ .++...++.++..|.+.|..++|+.+|+.|.. ||..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 4445555566688999999999999999885 57888889999999999999999999999973 999999999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE--RGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK 287 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (479)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 5789999999999999999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC
Q 011714 288 KRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV 367 (479)
Q Consensus 288 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (479)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++ +.|++++|.++|+.|.+.+..
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~-----k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG-----HAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999997 679999999999999999999
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 368 TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHhHHHHHHHHHHhCCCCCCCCCC
Q 011714 448 TKLDQLEKSYDACALYGAALKQGVIPQRKPQ 478 (479)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 478 (479)
.+|++.|++++|.++++.|++.|+.||..++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999997554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=492.82 Aligned_cols=414 Identities=20% Similarity=0.281 Sum_probs=393.9
Q ss_pred HHHHHH-hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 56 RFVDRI-KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 56 ~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.++..+ +.+...+|+.+++.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 411 ~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 411 KFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 334433 45668999999998874 8999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 215 NVKN--DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 215 ~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (479)
+|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 9986 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 293 PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|+ +.|++++|.++|+.|...+..||..+
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-----k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS-----NAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998 77999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ 452 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (479)
|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ----c-------------------CCHhHHHHHHHHHHhCCCCCCCCCC
Q 011714 453 ----L-------------------EKSYDACALYGAALKQGVIPQRKPQ 478 (479)
Q Consensus 453 ----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~ 478 (479)
. +..++|..+|++|++.|+.||..|+
T Consensus 802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 1 2246799999999999999997654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-57 Score=446.60 Aligned_cols=397 Identities=19% Similarity=0.312 Sum_probs=377.9
Q ss_pred HHhcCChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 60 RIKASPLKERIDIFDSIKKDG-TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
..+.++..+|+.+|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 356788999999999998764 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999996 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
.|+.||..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999954 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
+.++.+|++.|++++|.+++.+|.+.|+.|+..+++.++.+|+ +.|++++|.++|+.|.+ ||..+||.||.
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~-----k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS-----KWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH-----HCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 9999999999999999999999999999999999999999998 67999999999999865 58889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhccCCHh
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE-HAKIPSRTSYDMLITKLDQLEKSY 457 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 457 (479)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .++.|+..+|+.++++|++.|+.+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 588999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCC
Q 011714 458 DACALYGAALKQGVIPQRK 476 (479)
Q Consensus 458 ~A~~~~~~~~~~~~~p~~~ 476 (479)
+|.+++++| ++.|+..
T Consensus 480 eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 480 EAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HHHHHHHHC---CCCCCHH
Confidence 999998765 5666643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=442.28 Aligned_cols=407 Identities=18% Similarity=0.263 Sum_probs=362.5
Q ss_pred CcchHHHHHHHHHH-hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 011714 48 NPRSLQAQRFVDRI-KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIM 126 (479)
Q Consensus 48 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 126 (479)
.|....+..++..+ +.+..+.+..++..|.+.|..||..+||.++..|++.|+++.|.++|++|. .||..+|+.+
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~l 195 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTI 195 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHH
Confidence 35556666666654 445677788888888888888888888888888888888888888888876 4677788888
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC-----------------------------------CHHHHHHHHHHHHhcCCh
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGYHP-----------------------------------NVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~~ 171 (479)
+.+|++.|++++|.++|++|.+.|+.| |..+|+.|+.+|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 888888888888888888876655544 555668888999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
++|.++|++|. ++|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 276 ~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 276 EDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999997 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (479)
.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999965 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchhhccHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 332 MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 332 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
+|..++.++. +.|.+++|.++|+.|.+ .+..|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++
T Consensus 428 T~~~ll~a~~-----~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 428 TFLAVLSACR-----YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred HHHHHHHHHh-----cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 9999999997 67999999999999986 688999999999999999999999999998765 67899999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
++.+|...|+++.|..+++++.+.+ +.+..+|..|++.|.+.|++++|.++++.|.+.|+....
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 9999999999999999999998664 346789999999999999999999999999999987543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=447.93 Aligned_cols=394 Identities=18% Similarity=0.252 Sum_probs=265.9
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
+.|++++|..+|+.|.+ +|..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.+
T Consensus 234 k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 44555666666665542 35555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 66666665666666666666666666666666666655554 34555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------------
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR------------ 289 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------ 289 (479)
.||..||+.++.+|++.|++++|.++++.+.+.|..|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555544321
Q ss_pred ------------------CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccH
Q 011714 290 ------------------NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLL 351 (479)
Q Consensus 290 ------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (479)
++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+ ++|++
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~-----k~G~~ 540 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV-----RCGRM 540 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH-----HcCCH
Confidence 3455555555555555555555555556555555566666666666666665 56888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLM 431 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 431 (479)
++|..+|+.+ .+|..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 8888888776 45888999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-hCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCCC
Q 011714 432 Y-EHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRK 476 (479)
Q Consensus 432 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 476 (479)
. +.++.|+..+|+.++.+|++.|++++|.+++++| .+.||..
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~ 658 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPA 658 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHH
Confidence 8 6788999999999999999999999999999987 3667643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=446.46 Aligned_cols=415 Identities=15% Similarity=0.184 Sum_probs=363.0
Q ss_pred CCCcchHHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 46 KENPRSLQAQRFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
...|....+..++..+. .+.+..+.+++..+.+.|..|++.+||.|+.+|++.|+++.|.++|++|. .||..+|+
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 45677777888887764 45678999999999999999999999999999999999999999999997 57889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 125 IMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLK 284 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 284 (479)
++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 338 ~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999996 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------------------------------CCCcCHHHHH
Q 011714 285 LMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF------------------------------GFEVDERMMN 334 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~ 334 (479)
.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+. ++.||..++.
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~ 493 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHH
Confidence 9999999999999999999999999999998888877532 2344444444
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (479)
.++.+++ +.|.++.+.+++..+.+.+..++..+++.++.+|++.|+.++|.++|+.+ .||..+|+.+|.+
T Consensus 494 ~lL~a~~-----~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 494 AALSACA-----RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HHHHHHh-----hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 4444443 33445555555555555555555555566666677777777777777664 5788899999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH-hCCCCCCCCCC
Q 011714 415 LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL-KQGVIPQRKPQ 478 (479)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~ 478 (479)
|++.|+.++|+++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999998 67999987664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-26 Score=235.70 Aligned_cols=386 Identities=13% Similarity=0.102 Sum_probs=182.9
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..++.+.+.++. +..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+...|++++|..++
T Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344444444444333221 33444444444444444444444444443332 233334444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+.+.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 4444322 2334444444444444444444444444444332 2233444444444444444444444444444332 11
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|+..++.+...+ |+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 34444444444444555555555554444432 2233444444455555555555555555554432 22234444455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
++...|++++|.+.+..+.+.. +.+...+..+...+. ..|+.++|...|+++.+..+. +...++.++..+...
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL-----AQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----HCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 5555555555555555544432 123333333333332 345555555555555554332 445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
|+ .+|+.+++++.+.. +.+..++..+..++...|++++|..+++++++.+ +.+..++..++.++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55 55555555555432 1133444555555666666666666666666654 225556666666666666666666666
Q ss_pred HHHH
Q 011714 464 GAAL 467 (479)
Q Consensus 464 ~~~~ 467 (479)
++|+
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 6654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-25 Score=230.64 Aligned_cols=390 Identities=13% Similarity=0.086 Sum_probs=233.6
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..|+.+.+.+.. +...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...+
T Consensus 479 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444443332221 23333334444444444444444444444332 233444444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+++...+ +.+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+.+.+.. +.
T Consensus 557 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 557 EKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 4444332 2334444455555555555555555555555432 3445556666666666666666666666655442 22
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+...+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 44555556666666666666666666665542 2245556666666666666666666666665554 235556666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
.+...|++++|...+..+...+ |+...+..+...+. ..|++++|...++.+....+. +...+..+...|...
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL-----ASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 7777777777777777776653 33344444555554 557778888888777766544 667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
|++++|.+.|+++.+.. +.+..++..+...+...|+ .+|+.+++++.+.. +.+...+..++.++...|++++|.+.+
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 3466777888888888888 77888888887764 345667777888888889999999999
Q ss_pred HHHHhCCC
Q 011714 464 GAALKQGV 471 (479)
Q Consensus 464 ~~~~~~~~ 471 (479)
+++++.+.
T Consensus 861 ~~a~~~~~ 868 (899)
T TIGR02917 861 RKAVNIAP 868 (899)
T ss_pred HHHHhhCC
Confidence 99888654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-20 Score=194.45 Aligned_cols=398 Identities=13% Similarity=0.053 Sum_probs=263.2
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhH------------HH
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAP-NSWTF------------SI 125 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------------~~ 125 (479)
..+..++.++|+..|+...+.++. +...+..+...+.+.|++++|+..|++..+..... ....+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 345678899999999998876654 78889999999999999999999999988764211 11112 12
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 126 MIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
....+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2456778999999999999999874 4567788889999999999999999999998764 334555555554442 234
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 206 VEEAYEMLMNVKNDGLK--------PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 206 ~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
.++|+.+++.+...... .....+..+...+...|++++|++.|+++++.... +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 45555444433211000 00112233344444455555555555555444221 3334444455555555555
Q ss_pred hHHHHHHHHHhCCCCCCHhHH--------------------------------------------HHHHHHHHhcCChHH
Q 011714 278 KGVGLLKLMKKRNCLPDKISY--------------------------------------------STLLNGLLKWGKIRP 313 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~--------------------------------------------~~l~~~~~~~~~~~~ 313 (479)
+|+..++++.+.... +...+ ..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 555555554432211 11111 223344556666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
|..+++. .+.+......+...+. +.|++++|+..|+.+....+. +...+..++..+...|++++|++.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~-----~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQ-----QRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666551 1223333334444443 679999999999999987665 6788999999999999999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--C---CHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--P---SRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+.+.+.. +.+..++..+..++...|++++|.++++++...... | +...+..+...+...|++++|+..|++++.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 224556777888889999999999999999875421 2 224566678889999999999999999875
Q ss_pred -CCCCCC
Q 011714 469 -QGVIPQ 474 (479)
Q Consensus 469 -~~~~p~ 474 (479)
.|+.|+
T Consensus 740 ~~~~~~~ 746 (1157)
T PRK11447 740 ASGITPT 746 (1157)
T ss_pred hcCCCCC
Confidence 355544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-22 Score=184.11 Aligned_cols=304 Identities=12% Similarity=0.066 Sum_probs=208.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILVNSLCK 167 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 167 (479)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888764 44566788888888888888888888888876432211 2456777888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~ 243 (479)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 45667788888888888888888888888876543322 1234556667777888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
|...|+++.+... .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888776532 245566777777888888888888888877654322245566777777777777777777777766
Q ss_pred cCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcC
Q 011714 324 FGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK---GKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 400 (479)
. .|+...+..+...+. +.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.+
T Consensus 278 ~--~p~~~~~~~la~~~~-----~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 278 E--YPGADLLLALAQLLE-----EQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred h--CCCchHHHHHHHHHH-----HhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 4 344444444455443 557777777777766654 3455566655555543 446677777777777655
Q ss_pred CCCchH
Q 011714 401 HIPRTI 406 (479)
Q Consensus 401 ~~p~~~ 406 (479)
+.|++.
T Consensus 349 ~~~~p~ 354 (389)
T PRK11788 349 LKRKPR 354 (389)
T ss_pred HhCCCC
Confidence 555554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=182.15 Aligned_cols=303 Identities=13% Similarity=0.074 Sum_probs=150.1
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 206 (479)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 22344455555555555555555555555544321111 12344444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 207 EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555554431 22344444455555555555555555555444322111000
Q ss_pred HhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC
Q 011714 287 KKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS 366 (479)
Q Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (479)
....+..+...+...|++++|...++++.+... .+...+..+...+. ..|++++|.+.++++...++
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLAL-----AQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHCh
Confidence 011223334444445555555555555444321 11222222333332 34555555555555554332
Q ss_pred CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011714 367 VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDML 446 (479)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (479)
......++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 222334556666666667777777766666654 344445566666666677777777777666654 3555566655
Q ss_pred HHHHhc---cCCHhHHHHHHHHHHhCCCCCCC
Q 011714 447 ITKLDQ---LEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 447 ~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
+..+.. .|+..++..++++++++++.|++
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 555443 34666677777777666665554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-21 Score=171.44 Aligned_cols=370 Identities=15% Similarity=0.119 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTT-FTILVN 163 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 163 (479)
.++|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+... ...+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 5677888888889999999999999999874 556889999999999999999999999998875 455443 344555
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~ 242 (479)
.+...|++++|...|.+..+.. +-=..+|..|.-.+-..|+...|++.|++..+. .|+ ...|..|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 6667899999999998888763 223567888999999999999999999999875 444 678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD-KISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
.|...|.+...... -....+..+...|...|..+-|++.+++..+.. |+ ...|+.+..++-..|+..+|.+.|.+.
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999998877632 256678888889999999999999999998864 44 578999999999999999999999999
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
+..... .....+.+-..+. +.|.++.|..+|....+-.+. -....+.+...|-+.|++++|+..++++++ +
T Consensus 347 L~l~p~-hadam~NLgni~~-----E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYR-----EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHH-----HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 876432 2334455555554 779999999999988875443 346789999999999999999999999887 5
Q ss_pred CCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 402 IPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 402 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.|+ ...|+.+...|-..|+...|++.+.+.+..+ +--...++.|..+|...|+..+|+.-|+.+++ +.||.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 676 5689999999999999999999999999875 33457889999999999999999999999988 45654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-19 Score=178.84 Aligned_cols=369 Identities=16% Similarity=0.076 Sum_probs=256.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+......+.+.|++++|+..|++..+. .|+...|..+..+|...|++++|++.++..++.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455555566666666666665543 3455556666666666666666666666665543 2244555556666666
Q ss_pred cCChHHHHHHHHHHhhCC-----------------------------CCCCHHHHHHH----------------------
Q 011714 168 SGRLKEALEVLDQMGRIG-----------------------------CKPNIQTYNCL---------------------- 196 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l---------------------- 196 (479)
.|++++|+..|......+ .+++...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 666666654433221110 00000000000
Q ss_pred --------HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 011714 197 --------LKGL------CYVGRVEEAYEMLMNVKNDG-LKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV 260 (479)
Q Consensus 197 --------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (479)
+... ...+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..+++.++.... ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0000 12357889999999988764 223 4567888888899999999999999999886422 46
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
..|..+...+...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++.++.... +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 688889999999999999999999998764 335788889999999999999999999999876422 334444444444
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH------HHHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI------TFNNVIQA 414 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~ 414 (479)
. ..|++++|...|+......+. +...++.+..++...|++++|++.|+++.......+.. .++..+..
T Consensus 444 ~-----~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 444 Y-----KEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred H-----HCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 3 679999999999999876544 67889999999999999999999999988753221111 12222233
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 415 LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 415 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+...|++++|+.++++..+.. +.+...+..++.++.+.|++++|++.|+++++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445799999999999998875 345567889999999999999999999999875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-19 Score=172.72 Aligned_cols=330 Identities=11% Similarity=0.101 Sum_probs=267.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
.++..+++|+..+|+.+++.+....+. +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 345677899999999999999877666 56666777788888999999999999999875 5667788999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
+++|...++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999999763 4467889999999999999999999999887664 2334444333 347889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh----HHHHHHHHHhCCC
Q 011714 216 VKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK----GVGLLKLMKKRNC 291 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~ 291 (479)
+.+....++...+..+...+...|++++|+..++.+.+.... +...+..+...+...|++++ |+..+++..+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 887654445555566678889999999999999999987533 67788889999999999986 8999999988643
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh
Q 011714 292 LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG 371 (479)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (479)
.+...+..+...+...|++++|...+++..+.... +......+...+. ..|++++|...|+.+...++. +..
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~-----~~G~~~eA~~~l~~al~~~P~-~~~ 353 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALR-----QVGQYTAASDEFVQLAREKGV-TSK 353 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCcc-chH
Confidence 36778999999999999999999999999876422 2333444444443 679999999999999876544 334
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
.+..+..++...|++++|+..|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555677889999999999999998875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-18 Score=181.83 Aligned_cols=368 Identities=10% Similarity=-0.007 Sum_probs=276.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHH----------
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP-NVTTF---------- 158 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------- 158 (479)
.....+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34567788999999999999998864 5578899999999999999999999999998764221 11122
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 159 --TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 159 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
......+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|++.|++..+... .+...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 122456778999999999999999875 45677888899999999999999999999998643 24666777777764
Q ss_pred ccCCHHHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 237 KVGRSNEAMELLNEAIERGVT--------PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
.++.++|..+++.+...... .....+..+...+...|++++|+..+++..+.... +...+..+...+.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 46789999888765432100 01224556778888999999999999999887532 567788899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc---------------------------------------ccchhhc
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCM---------------------------------------KSWEEKD 349 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------------~~~~~~~ 349 (479)
|++++|...++++.+.... +......+...+.. ..+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998865322 22111111111100 0011335
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
+.++|..+++. ...+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++.++...|++++|+..++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555541 12245567788899999999999999999999863 2357788999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 430 LMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.+.. +.+...+..+..++...|++++|.++++++++..
T Consensus 662 ~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 662 KLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888754 3456677788889999999999999999998753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-19 Score=174.03 Aligned_cols=336 Identities=12% Similarity=0.033 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|++++|...++.+.... |.+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445567788889999999999999998764 4556677777788888999999999999999874 4577889999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999999864 456778889999999999999999999988766433 33344333 347889999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH----HHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP----AVSIFKE 320 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 320 (479)
...++.+++....++...+..+...+.+.|++++|+..++++..... .+...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 99999988764434455556667889999999999999999988753 367788889999999999986 8999999
Q ss_pred HHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 011714 321 MVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (479)
+.+... .+...+..+...+. ..|++++|...+++.....+. +...+..+..++...|++++|+..++++...
T Consensus 276 Al~l~P-~~~~a~~~lg~~l~-----~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 276 ALQFNS-DNVRIVTLYADALI-----RTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHhhCC-CCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 987532 24455555555554 679999999999999987655 5677888999999999999999999999875
Q ss_pred CCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 401 HIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 401 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.|+. ..+..+..++...|+.++|+..|++..+..
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3443 334445678899999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-20 Score=164.50 Aligned_cols=403 Identities=14% Similarity=0.119 Sum_probs=319.3
Q ss_pred HHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhc
Q 011714 56 RFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNK 133 (479)
Q Consensus 56 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 133 (479)
.+-+.++ .|.+++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+...+-..
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 3445554 46689999999999987655 7899999999999999999999999999976 45543 344555666678
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
|++.+|..-|.+.++.. +--...|..|...+-.+|+...|++.|++..+.. +--..+|-.|...|...+.+++|+..|
T Consensus 198 Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 99999999999998763 3346789999999999999999999999998874 333678999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 214 MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
.+...... -....+..+.-.|...|.++-|+..|++.++.... -...|+.|..++-..|+..+|++.+.+...... .
T Consensus 276 ~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~ 352 (966)
T KOG4626|consen 276 LRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-N 352 (966)
T ss_pred HHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-c
Confidence 99887532 24677888888899999999999999999987433 456899999999999999999999999988642 2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
.....+.|...+...|.+++|..+|....+. .|.- ...+.+...| .++|++++|...|++..+-.+. -...
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~-----kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY-----KQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH-----HhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 4678899999999999999999999998874 3433 2333344444 3789999999999998875443 3468
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
|+.+...|-..|+.+.|+..+.+++.. .|. ...++.|...|-..|+..+|+.-++...+.. +.-+..|-.++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHH
Confidence 999999999999999999999998874 555 5678999999999999999999999999875 333456666665542
Q ss_pred c---cC----CHhHHHHHHHHHHhCCCCCCCCC
Q 011714 452 Q---LE----KSYDACALYGAALKQGVIPQRKP 477 (479)
Q Consensus 452 ~---~g----~~~~A~~~~~~~~~~~~~p~~~~ 477 (479)
- -- +.++..++.++-+++..-|+.++
T Consensus 502 ~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP 534 (966)
T KOG4626|consen 502 IVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHP 534 (966)
T ss_pred HHhcccchHHHHHHHHHHHHHHHhhhcCCccCc
Confidence 2 12 23444455555554445555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-18 Score=170.17 Aligned_cols=403 Identities=11% Similarity=0.023 Sum_probs=303.7
Q ss_pred hHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 011714 51 SLQAQRFVDR-IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC 129 (479)
Q Consensus 51 ~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (479)
+..+..++.. .-.|+..+|+.++....... +.+...+..+...+...|++++|..+|++..+.. +.+...+..++.+
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455555543 45788999999999987633 3466779999999999999999999999988764 5567788889999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 999999999999999999873 45666 8889999999999999999999999875 44666777788888899999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHc-----cCCH---HHHHHHHHHHHHC-CCCCCHh-hH----HHHHHH
Q 011714 210 YEMLMNVKNDGLKPDV------YTYTAVMDGFCK-----VGRS---NEAMELLNEAIER-GVTPNVV-TF----NTLFNG 269 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~ 269 (479)
++.++.... .|+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+ ...+..
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999986654 2221 112222332221 2234 7788888888754 2223221 11 111334
Q ss_pred HHhcCChhhHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHhcccc
Q 011714 270 YCKEGTPMKGVGLLKLMKKRNCL-PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV---DERMMNSLLRGLCMKSW 345 (479)
Q Consensus 270 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 345 (479)
+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|...|+++.+..... .......+..++.
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~---- 321 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL---- 321 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH----
Confidence 56779999999999999887632 332 22335778999999999999999988653221 1223334444443
Q ss_pred hhhccHHHHHHHHHHHHhCCCC-----------CC---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSV-----------TD---PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNV 411 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~-----------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 411 (479)
+.|++++|..+++.+....+. |+ ...+..+...+...|++++|++.++++.... +.+...+..+
T Consensus 322 -~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 322 -ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred -hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 679999999999998876431 22 1245667788999999999999999998763 3357788899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
...+...|++++|++.+++..+.. +.+...+..++..+.+.|++++|..+++++++.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876 446677778888999999999999999999884
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-18 Score=167.82 Aligned_cols=364 Identities=14% Similarity=0.049 Sum_probs=279.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
...+.+++++|+..|+...+.. |+...|..+..++.+.|++++|+..++...+.. +.+...+..+..+|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3457799999999999988654 567789999999999999999999999999875 5567899999999999999999
Q ss_pred HHHHHHHHHhCCC-----------------------------CCCHHHHHHH----------------------------
Q 011714 139 ARKVIDCMFDNGY-----------------------------HPNVTTFTIL---------------------------- 161 (479)
Q Consensus 139 a~~~~~~~~~~~~-----------------------------~~~~~~~~~l---------------------------- 161 (479)
|...+..+...+. +.+...+..+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 9876654432110 0110000000
Q ss_pred --HHHH------HhcCChHHHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 162 --VNSL------CKSGRLKEALEVLDQMGRIG-C-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 162 --i~~~------~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
+... ...+++++|.+.|++..+.+ . +.....|..+...+...|++++|+..+++...... -....|..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~l 371 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKR 371 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHH
Confidence 0000 11357889999999988764 2 33456788888999999999999999999987632 246688888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
..++...|++++|...|+++++... .+...|..+...+...|++++|+..|++..+... .+...+..+..++.+.|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988743 3678899999999999999999999999988753 3567788888999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHhcCCC
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG------TYGIVIRTLGKGKK 385 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~ 385 (479)
++|...+++.++.. +.+...+..+...+. ..|++++|...|++.....+..+.. .++..+..+...|+
T Consensus 450 ~eA~~~~~~al~~~-P~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 450 ASSMATFRRCKKNF-PEAPDVYNYYGELLL-----DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHH-----HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999988753 223455555655554 6799999999999988765432221 12222333445799
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+++|.++++++..... .+...+..+..++...|++++|+.+|++..+..
T Consensus 524 ~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999887642 244578889999999999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-17 Score=161.41 Aligned_cols=405 Identities=12% Similarity=0.039 Sum_probs=302.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
......+...++|+...|+..|+...+.++.-....+ .++..+...|+.++|+..+++..... +........+...+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 4455667778999999999999999877655222344 88899999999999999999998211 223333344466888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
..|++++|.++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999875 446778888889999999999999999999877 5666666555555555677767999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH----------------------------------------------
Q 011714 212 MLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM---------------------------------------------- 245 (479)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---------------------------------------------- 245 (479)
.++++.+.... +...+..+..++.+.|-...|.
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999987422 4555555555555444333332
Q ss_pred --HHHHHHHHC-CCCCCH-hhH----HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 246 --ELLNEAIER-GVTPNV-VTF----NTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 246 --~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.-++.+... +..|.. ..| .-.+-++...|++.++++.++.+...+.+....+-..+..+|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 223333221 111221 111 234557788999999999999999888765667888999999999999999999
Q ss_pred HHHHHHcCC-----CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC-----------CCCh---hhHHHHHH
Q 011714 318 FKEMVRFGF-----EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS-----------VTDP---GTYGIVIR 378 (479)
Q Consensus 318 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~ 378 (479)
++.+..... .++......|.-++. +.+++++|..+++.+.+..+ .|++ ..+..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~l-----d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLN-----ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHH-----hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 999876431 223333456666765 78999999999999987433 1222 23445677
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhH
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (479)
.+...|+..+|.+.++++.... +-|......+...+...|.+.+|...++...... +.+..+....+.++...|++++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999998763 3478888999999999999999999997777664 5567788888899999999999
Q ss_pred HHHHHHHHHhC
Q 011714 459 ACALYGAALKQ 469 (479)
Q Consensus 459 A~~~~~~~~~~ 469 (479)
|..+.++.++.
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-17 Score=166.24 Aligned_cols=377 Identities=12% Similarity=0.035 Sum_probs=284.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
..+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3466667788889999999999999999998633 5666679999999999999999999999998763 4567788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
..++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998874 44566 888999999999999999999999987533 566667788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCH------hhHHHHHHHHH-----hcCCh---hhHHHHHHHHHhC-CCCCCHh-HH----HHH
Q 011714 242 NEAMELLNEAIERGVTPNV------VTFNTLFNGYC-----KEGTP---MKGVGLLKLMKKR-NCLPDKI-SY----STL 301 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l 301 (479)
++|+..++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999876654 2221 11122222222 22234 7788888888754 2222221 11 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC---ChhhHHHHH
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFE-VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT---DPGTYGIVI 377 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 377 (479)
+..+...|++++|...|+.+.+.+.. |+.... .+...+. ..|++++|...|+.+....+.. .......+.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl-----~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYL-----KLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHH-----hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 34556779999999999999877532 332221 1333443 6699999999999987654331 123466677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCC-----------CCc---hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011714 378 RTLGKGKKTDEALIHLHHAIEMGH-----------IPR---TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSY 443 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 443 (479)
.++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+.+++++.... +.+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 788999999999999999887521 123 1245567778889999999999999999875 5578889
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 444 DMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
..++..+...|++++|++.++++++.. |+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~ 426 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLE--PRN 426 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCC
Confidence 999999999999999999999998854 664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-16 Score=132.97 Aligned_cols=408 Identities=16% Similarity=0.194 Sum_probs=284.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HH-HHHHHHHHHHhCC--------------
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE--QE-TAVKFFSEASSYG-------------- 115 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~A~~~~~~~~~~~-------------- 115 (479)
.-..++..+.++.++++.-+|+.|...|++.+...--.|++..+-.+. +. .-++.|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 445778889999999999999999999988888776666664443222 11 1122222222211
Q ss_pred -----CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 011714 116 -----LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI 190 (479)
Q Consensus 116 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 190 (479)
.+.+..+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 24567789999999999999999999999998777788999999998764432 227888899988889999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----CCCC----
Q 011714 191 QTYNCLLKGLCYVGRVEE----AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE-AMELLNEAIE----RGVT---- 257 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~----~~~~---- 257 (479)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +...
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 56778889999999999999999999998887644 4444444433 1121
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 258 PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN----CLPD---KISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....+.....+.....|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 234456777888888888888887766654321 2233 234666777778888888888889988877778888
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-C--------HHH-----HHHHHH--
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK-K--------TDE-----ALIHLH-- 394 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--------~~~-----A~~~~~-- 394 (479)
.+...++++.. -.+.++-..++|..+...|..-+.....-++..+++.+ . +.. |..+++
T Consensus 434 ~~m~~~lrA~~-----v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 434 QTMIHLLRALD-----VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred hhHHHHHHHHh-----hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88888888764 55777777788877776654433444444444444443 1 111 111111
Q ss_pred -----HHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 395 -----HAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK----IPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 395 -----~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
++.. ........+..+-.+.+.|..++|.+++..+.+.+- .|.......+++.-.+......|..+++-
T Consensus 509 e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1222 223445567777778899999999999998865543 23333344566666777889999999998
Q ss_pred HHhCCC
Q 011714 466 ALKQGV 471 (479)
Q Consensus 466 ~~~~~~ 471 (479)
|...+.
T Consensus 587 a~~~n~ 592 (625)
T KOG4422|consen 587 ASAFNL 592 (625)
T ss_pred HHHcCc
Confidence 877553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-15 Score=147.81 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=64.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
...|+.++|+..|+...+.++. +..++..|...|...|++++|+..+++..+.. |+...|..++... ++.++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3458899999999999988776 68999999999999999999999999998764 4433333333222 7777888
Q ss_pred HHHHHHHhC
Q 011714 141 KVIDCMFDN 149 (479)
Q Consensus 141 ~~~~~~~~~ 149 (479)
.+++++...
T Consensus 129 ~~ye~l~~~ 137 (987)
T PRK09782 129 TTVEELLAQ 137 (987)
T ss_pred HHHHHHHHh
Confidence 888887754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-14 Score=141.94 Aligned_cols=371 Identities=13% Similarity=0.063 Sum_probs=275.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNS--WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -+........+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 344445668999999999999999764 443 244 8888888999999999999999832 1223344444467888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
..|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999875 445777788889999999999999999999876 4555566555555555677767999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH-------------------------------------------
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL------------------------------------------- 283 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------------------------------------------- 283 (479)
.++++.+.... +...+..+..++.+.|-...|.++.
T Consensus 191 ~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999987433 5666666666666665544444333
Q ss_pred -----HHHHhC-CCCCCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHH
Q 011714 284 -----KLMKKR-NCLPDK-----ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLE 352 (479)
Q Consensus 284 -----~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 352 (479)
+.+... +..|.. ....-.+-++...|++.++++.|+.+...+.+....+...+..+|. ..+.++
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl-----~~~~P~ 344 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI-----DRRLPE 344 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH-----hcCCcH
Confidence 222221 111221 1222345577888999999999999998886656677888888887 669999
Q ss_pred HHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------CCch---HHHHHHHH
Q 011714 353 DAYQVFEKMTKKVS-----VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH-----------IPRT---ITFNNVIQ 413 (479)
Q Consensus 353 ~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~---~~~~~l~~ 413 (479)
+|..+|+.+..... .++......|.-++...+++++|..+++++.+... .|++ ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999876432 12233357788999999999999999999987321 1222 23345567
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 414 ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++.+... .|+.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 7889999999999999998775 668899999999999999999999999877664 5654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-15 Score=126.68 Aligned_cols=349 Identities=15% Similarity=0.202 Sum_probs=262.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
+.+..++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 34778999999999999999999999999887767899999999997654332 27889999999999999999999
Q ss_pred HHHHHhcCChHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CCC---C-CHHHH
Q 011714 162 VNSLCKSGRLKE----ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEE-AYEMLMNVKND----GLK---P-DVYTY 228 (479)
Q Consensus 162 i~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~---~-~~~~~ 228 (479)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++ | |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999988754 55555555432 222 2 45567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER----GVTPN---VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....|+....+.....|+.|.-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 78888999999999999987655432 12232 234566778888999999999999999988888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc----hhhccHHH-----HHHHH-------HHHHhCC
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW----EEKDLLED-----AYQVF-------EKMTKKV 365 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~-----a~~~~-------~~~~~~~ 365 (479)
+++....|.++-..++|.++...|..-......-++..++.... ....++.. |..++ .++.+..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 99999999999999999999887755555444444444442110 00011111 11111 2233332
Q ss_pred CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI----PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK 436 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (479)
......+.++-.+.+.|+.++|.+++..+.+.+-+ |......-++..-...+++..|+.+++-|...+.
T Consensus 520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34566888888999999999999999998655322 3333344666777888999999999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-14 Score=134.63 Aligned_cols=418 Identities=15% Similarity=0.067 Sum_probs=267.3
Q ss_pred CCCcchHHHHHHHHH--HhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 011714 46 KENPRSLQAQRFVDR--IKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-- 119 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 119 (479)
.+++..+.+...+.. ...++.+.+..+.+.+...... .-...|..+.+++-..|++++|...|-+..+.. ++
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 444545555555443 3567788888887766544322 234568888888888888888888888877653 33
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG----RLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
...+..+.+.+++.|+++.+...|+.+.... +-+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~ 419 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLE 419 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHH
Confidence 3445567788888888888888888887763 445667777777776654 4456666665555443 445566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCC------Hhh
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVK----NDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER---GVTPN------VVT 262 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~ 262 (479)
+...+....-+.. +.+|.... ..+..+.....|.+...+...|++++|...|...... ...++ +.+
T Consensus 420 laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 6555544433333 44444332 2333455666666666666666666666666665543 11111 112
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC---------------------------------CCCCHhHHHHHHHHHHhcC
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRN---------------------------------CLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~ 309 (479)
-..+...+-..++.+.|.+.|..+.+.. ...++..+..+...+.+..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 2233334444445555555555444431 0112233333333444444
Q ss_pred ChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccc-------chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 310 KIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKS-------WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
++..|..-|..+...- ..+|.....+|-..+.... ....+..+.|+++|.++.+.++. |...-|.+..+++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhh
Confidence 4444444444333221 1234444444444332111 12456789999999999988776 7788899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
..|++.+|..+|.+..+... -...+|..+..+|..+|++..|++.|+...+... ..+......|.+++.+.|++.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999988643 3556899999999999999999999999887644 557788999999999999999999
Q ss_pred HHHHHHHhCC
Q 011714 461 ALYGAALKQG 470 (479)
Q Consensus 461 ~~~~~~~~~~ 470 (479)
+....++...
T Consensus 737 ~~ll~a~~~~ 746 (1018)
T KOG2002|consen 737 EALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhC
Confidence 9999887754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-13 Score=137.19 Aligned_cols=355 Identities=10% Similarity=-0.040 Sum_probs=235.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---hH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--GYHPNVTTFTILVNSLCKSGR---LK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~ 172 (479)
.+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++++..... +..++......|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 467777777777777652 346666666666777888888888888888752 122344455577777777665 23
Q ss_pred HHHHH-------------------------HHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 173 EALEV-------------------------LDQMGRIGCKP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 173 ~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
++..+ +...... .++ +...|..+..++.. ++.++|+..+.+.... .|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 33222 1111111 133 56677777777665 7777788877776654 3454
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGL 305 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (479)
.....+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.+ +.+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 44444455556788888888888877554 3344445666777788888888888888887764 22333333344444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKK 385 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (479)
...|++++|...+++.++. .|+...+..+...+. +.|+.++|...++......+. +...++.+..++...|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~-----~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYR-----QRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGD 658 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 5568888888888888765 345555555555554 668888888888888877655 66777788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+++|+..++++.+... -+...+..+..++...|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++
T Consensus 659 ~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 659 IAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888877532 256677788888888888888888888888764 23445556666677777777777777777
Q ss_pred HHhCC
Q 011714 466 ALKQG 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
....+
T Consensus 737 ~~~~~ 741 (987)
T PRK09782 737 RWTFS 741 (987)
T ss_pred HhhcC
Confidence 65543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-13 Score=131.21 Aligned_cols=393 Identities=14% Similarity=0.066 Sum_probs=272.6
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
...++.++...-..+.. ++...+.|...+.-.|+++.++.+...+..... ..-...|..+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45566666655544443 778889999999999999999999999886531 123456888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG----RVEEAYEMLMNVKND 219 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~ 219 (479)
.+..+..-.-....+--|...+.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 988876422223445568889999999999999999998764 445677777777777775 567788888887766
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCC
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI----ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NCL 292 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 292 (479)
. +.|...|-.+...+-...-+ .++.+|..+. ..+..+.....|.+...+...|++.+|...|+..... ...
T Consensus 410 ~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 T-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred c-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 4 44778887777766655443 3366666554 3455567888999999999999999999999988655 112
Q ss_pred C------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhcccchhhccHHHHHHHHHHHHhCC
Q 011714 293 P------DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERM-MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV 365 (479)
Q Consensus 293 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 365 (479)
+ +..+--.+....-..++.+.|.+.|+.+++. .|.-.. +..+. +.. ...+...+|...++.....+
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~-~ma----~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG-CMA----RDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh-HHH----HhccCcHHHHHHHHHHHhcc
Confidence 2 2223334555666677888888888888764 222211 11111 111 12344444444444433221
Q ss_pred C-----------------------------------CCChhhHHHHHHHHh------------cCCCHHHHHHHHHHHHH
Q 011714 366 S-----------------------------------VTDPGTYGIVIRTLG------------KGKKTDEALIHLHHAIE 398 (479)
Q Consensus 366 ~-----------------------------------~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~ 398 (479)
. .+|..+.-.|...|. ..+..++|+++|.+++.
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 1 123333333334332 22346778888888877
Q ss_pred cCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 399 MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 399 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
... -|...-+.+.-+++..|++.+|+.+|.+..+.. .....+|-.+.++|..+|++-.|++.|+..+++-.
T Consensus 641 ~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 641 NDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred cCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 532 256666777788889999999999999999875 34678899999999999999999999999888644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-13 Score=127.03 Aligned_cols=372 Identities=13% Similarity=0.057 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
...-.....+...|+.++|.+++.++++.. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444455688888888888888775 6677788888888888888888887766554433 44678888888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY----TAVMDGFCKVGRS 241 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~ 241 (479)
.+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-+ ...+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 88888888888888888775 556666666777788888888888888888876443232222 3335556667777
Q ss_pred HHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC---------------------------CCC
Q 011714 242 NEAMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN---------------------------CLP 293 (479)
Q Consensus 242 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~ 293 (479)
+.|.+.++..... +-..+...++.++..+.+...++.+......+.... ..+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 8888888777662 223355567888888888888888888777765511 112
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG 371 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 371 (479)
+... .-+.-++.+.+..+....+...+.... +..+...+.-+..++. +.|.+.+|+.+|..+......-+..
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~-----~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT-----NIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH-----hcccHHHHHHHHHHHhcCccccchh
Confidence 2222 122234445555555556666666655 4445667778888886 7799999999999998776665677
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------CCCCHhh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHA--------KIPSRTS 442 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~ 442 (479)
.|-.+..+|...|.+++|.+.++.++.. .| +...-..|...+.+.|+.++|.+.++.+..-+ ..|+...
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 8999999999999999999999998875 33 34556667777889999999999998865322 3556666
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.......|.+.|+.++=......|+.
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66777788888988875555444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-13 Score=128.73 Aligned_cols=330 Identities=12% Similarity=0.054 Sum_probs=254.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE 207 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (479)
......|++++|.+++.++++.. +.+...|..|..+|-..|+.+++...+-...... +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444599999999999999875 5688999999999999999999998887666654 557789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCChhhHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT----FNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~ 283 (479)
.|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..- -..++..+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999875 34666666678889999999999999999988743222222 233456677778779999999
Q ss_pred HHHHhCC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCcCHHHHHH
Q 011714 284 KLMKKRN-CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG---------------------------FEVDERMMNS 335 (479)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ 335 (479)
+.....+ -..+...++.++..+.+...++.+........... ..++..++..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 8887632 23355678888888999999999888877766521 2223333222
Q ss_pred HHHHHhcccchhhccHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 336 LLRGLCMKSWEEKDLLEDAYQVFEKMTKKV--SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 336 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
.+... +.+..+....+...+...+ +.-+...|.-+..+|...|++.+|+.++..+.......+...|..+..
T Consensus 384 ~icL~------~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 384 MICLV------HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhhhh------cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22222 2233344444444444444 333557889999999999999999999999998766667889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 414 ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+|...|.+++|++.+++.+... +.+...-..|...+.++|+.++|.+.++.+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999875 5566777888889999999999999999875
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-13 Score=120.87 Aligned_cols=376 Identities=13% Similarity=0.089 Sum_probs=233.7
Q ss_pred hcCChhhHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 62 KASPLKERIDIFDSIKKDGTNW----SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
+...+.+|+++|+.....-+.. ...+.+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~e 326 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAE 326 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHH
Confidence 4455677777776655433222 2345566666777889999999999988765 678776666666677788888
Q ss_pred hHHHHHHHHHhCCCC------------CCHHHHHHHH-----HHHHhcC--ChHHHHHHHHHHhhCCCCCCHHH---H--
Q 011714 138 EARKVIDCMFDNGYH------------PNVTTFTILV-----NSLCKSG--RLKEALEVLDQMGRIGCKPNIQT---Y-- 193 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~------------~~~~~~~~li-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~---~-- 193 (479)
+..+.|.+|+..... |+....+--+ .-+-+.+ +.++++-.--+++.--+.|+-.. |
T Consensus 327 kmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcl 406 (840)
T KOG2003|consen 327 KMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCL 406 (840)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHH
Confidence 888888888753222 2222222211 1111111 11222211111111111222100 0
Q ss_pred ----------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------------------------
Q 011714 194 ----------------NCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM------------------------- 232 (479)
Q Consensus 194 ----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li------------------------- 232 (479)
-.-..-+.+.|+++.|+++++-+.+..-+.....-+.|-
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 011235778888888888887765542221111111110
Q ss_pred -----------HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 233 -----------DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL---FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 233 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
......|++++|.+.|++.+.. |..+-.+| .-.+-..|+.++|++.|-++..- +..+....
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl 561 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVL 561 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHH
Confidence 1112357788888888887764 33333333 23456778888888888776442 12256667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
.-+...|-...+...|++++.+.... ++.|+.++..+...|- +.|+-.+|.+.+-.--+. .+.+..+...+..
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd-----qegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD-----QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh-----cccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 77777888888888888888776543 3446667777777664 668878887766554443 3337778888888
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL-CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
.|....-+++++.+|+++.- +.|+..-|..++..| .+.|++.+|..+++...+.. +.+...+..|++.+...|
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlg 708 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhcccc
Confidence 88888888999999987654 678888888877644 57899999999998887764 668888888888887776
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-13 Score=125.07 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=151.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQT-YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYT--AVMDGFCKVGRSNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 244 (479)
.|++++|.+.+....+.. +++.. |.....+..+.|+++.|.+++.++.+. .|+..... .....+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666665555443321 11222 222233335556666666666665543 22322211 224455556666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHhcCChHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666555322 4455555666666666666666666666555433211 1222223322333344444455
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 318 FKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++.+.+. .+.+......+...+. ..|+.++|..++++..+... +.. -.++.+....++.+++++..+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~-----~~g~~~~A~~~L~~~l~~~~--~~~--l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLI-----ECDDHDTAQQIILDGLKRQY--DER--LVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHhcCC--CHH--HHHHHhhccCCChHHHHHHHHHHH
Confidence 5444322 1234444444555554 55677777777766655322 221 112333334577777777777766
Q ss_pred HcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 398 EMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 398 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.. +-|+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.++|++.+..
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 542 224555667777777777777777777777765 466666677777777777777777777776653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-13 Score=126.06 Aligned_cols=292 Identities=11% Similarity=0.001 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+++.+..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666655554432 22 222333344555556666666666555443211111222223455555666666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH-HHHHH---HHhcCChHHHHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS-TLLNG---LLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~a~~~~~~~~ 322 (479)
.++.+.+..+. +......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666555322 4445555556666666666666666666555432 222111 11111 111122222222333333
Q ss_pred HcCC---CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 323 RFGF---EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT-YGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 323 ~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+... +.+......+...+. ..|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~-----~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLI-----DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHH-----HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 2211 124444444444443 45666666666666665543321111 11111222334566777777777665
Q ss_pred cCCCCch--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 399 MGHIPRT--ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 399 ~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.. +-|+ ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+..
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 42 2233 4566777888888888888888885433333577777778888888888888888888877654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-13 Score=124.25 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=198.2
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFT-ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN--CLLKGLCYVGRVEEA 209 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 209 (479)
.|+++.|++......+.. +++..+. .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777666655432 1223332 2234446777888888888777764 44443222 335667777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCChhhHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV-------VTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888877776533 5667777777788888888888888777776544222 1223333333344445556666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 283 LKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
++.+.+. .+.+......+...+...|+.++|..++.+..+. .++...... .... ..++.+++.+..+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l--~~~l-----~~~~~~~al~~~e~~l 321 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLL--IPRL-----KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH--Hhhc-----cCCChHHHHHHHHHHH
Confidence 6665433 2347778888999999999999999999998874 444432221 1221 3488899999999988
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..+. |+..+..+...+...|++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|..++++....
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 87665 778888999999999999999999999987 4688888899999999999999999999987654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-13 Score=124.90 Aligned_cols=291 Identities=13% Similarity=0.026 Sum_probs=179.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 208 (479)
..|+++.|.+.+....+.. |+ ...+-....+....|+.+.|.+.+.+..+.. |+. ..-......+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4566777777666655542 33 2233334455566677777777776665442 332 233334566666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHH---HhcCChhhHHHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN-TLFNGY---CKEGTPMKGVGLLK 284 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~ 284 (479)
|...++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777777665422 4556666667777777777777777777666443 222221 111111 22222333333444
Q ss_pred HHHhCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 285 LMKKRNC---LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 285 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
.+..... +.+...+..+...+...|+.++|.+++++..+.........+. ++..+... ..++.+.+.+.++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l---~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRL---KPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhc---CCCChHHHHHHHHHH
Confidence 4433321 1266777778888888888888888888887753322211111 22222211 346777888888887
Q ss_pred HhCCCCCCh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 362 TKKVSVTDP--GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 362 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766544 55 667788999999999999999999544444578888888999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=137.07 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
...+...++++.|...++++...+.. +...+..++.. ...+++++|.++++...+.. ++...+..++..+...+++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHH
Confidence 33333444444444444444443222 23333333333 34444444444444333221 2333334444444444555
Q ss_pred HHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHH
Q 011714 312 RPAVSIFKEMVRFGF-EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
+++.++++.+....- ..+...+..+...+. +.|+.++|...+++..+..+. |......++..+...|+.+++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-----~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYE-----QLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHH-----HCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 554444444432211 122222222222222 345555555555555444333 3444445555555555555555
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
++++...... +.|+..+..+..++...|++++|+.++++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 5554444331 2233444555555555555555555555555443 3345555555555555555555555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-11 Score=108.16 Aligned_cols=396 Identities=10% Similarity=0.026 Sum_probs=261.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
.++....|..+|+.....+.. +...|-..+..=.++.++..|..++++.+..- +.-...|.-.+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 345678899999998876654 88888889999999999999999999988652 2223356666666667799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-G 220 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 220 (479)
+|+....- .|+...|.+.|+.=.+.+.++.|..+|++..-. .|++.+|--..+.=.+.|....+..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998864 789999999999999999999999999998765 588889888888888888888888888877653 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------------------------------------------
Q 011714 221 -LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV------------------------------------------- 256 (479)
Q Consensus 221 -~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 256 (479)
-..+...+.+....=.++..++.|.-+|+-.++.=.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 011233344444333344455555555554444311
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHH---HhcCChHHHHHHHHHHHHcCC
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGL---LKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 326 (479)
+-|-.+|--.+..-...|+.+...+++++.... ++|-. ..|..+--++ ....+.+.+.++|+..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 123344444555555556666666666666654 23311 1111111111 2355666666666666652 2
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI 406 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 406 (479)
+....++..+--.++... -++.++..|.+++...... .|...++...|..-.+.+.++.+.+++++.++.+.. +..
T Consensus 397 PHkkFtFaKiWlmyA~fe-IRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~ 472 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFE-IRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCY 472 (677)
T ss_pred CcccchHHHHHHHHHHHH-HHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhH
Confidence 223344444433333211 2456677777777665543 455567777777777888888888888888876433 566
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+|......-...|+.+.|..+|+.++.... ......|...|+--...|.++.|..+|+++++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 777776666677888888888887776432 223345666666667778888888888888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-12 Score=106.40 Aligned_cols=236 Identities=16% Similarity=0.178 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHhHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPN--SWTFSIMI 127 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~ 127 (479)
|+.+-.-++.+-+...++|+++|-+|.+.+.. +.++.-+|.+.|.+.|..+.|+++...+.++. ..-+ ......|.
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33444445555566666666666666554332 44555556666666666666666666655421 0000 12223344
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhc
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYV 203 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 203 (479)
.-|...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-.+. ...|..+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 45555666666666666665433 22344455566666666666666666665555432222 12334444444445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
.+++.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5555555555555544322 222333344455555555555555555555433333334455555555555555555555
Q ss_pred HHHHhC
Q 011714 284 KLMKKR 289 (479)
Q Consensus 284 ~~~~~~ 289 (479)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-12 Score=108.67 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=193.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.|++.+|.+...+-.+.+ +.....|..-..+--..|+.+.+-.++.+..+.-..++....-...+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766555 2234455555666667777777777777776653344555556666667777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK-------ISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
++++.+.+.. +.........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666544 4556677777777777777777777777776654443 3556666655555555555556665
Q ss_pred HHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 011714 321 MVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG 400 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 400 (479)
..+. .+-++.....++.-+. ++|+.++|.++..+..++...|. -...-.+.+.++.+.-++..++-...
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li-----~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLI-----RLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHH-----HcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-
Confidence 5432 2334455555555554 66888888888877777655443 22223345666766666666665543
Q ss_pred CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 401 HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 401 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
.+.++..+.+|...|.+.+.+.+|..+|+...+. .|+..+|..+.+++.+.|+..+|.++.++.+..-..|+.
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 2234567888888888888888888888877765 578888888888888888888888888888765555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=134.05 Aligned_cols=254 Identities=13% Similarity=0.136 Sum_probs=71.4
Q ss_pred hcCChhhHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 62 KASPLKERIDIFDSIKKDG-TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
..+++++|+++++...... .+.+...|..+...+...++++.|++.++++...+ +-+...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccc
Confidence 4455566666664332222 22234444444445555566666666666655543 2234445455544 4555666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++..+.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 655554433 2344445555555556666666666665544321 2334555555555566666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
.+. |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+.++++..+.. +.|.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 211 34555555555555666665555555554432 2234445555566666666666666666655532 22455555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.+..++...|+.++|.++..++.
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHT----------------
T ss_pred ccccccccccccccccccccccc
Confidence 55556666666666665555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-10 Score=104.80 Aligned_cols=388 Identities=12% Similarity=0.013 Sum_probs=291.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKV 142 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (479)
-...+.|+-++....+.- +.+.. |..+|++..-++.|..+++...+. ++.+..+|.+-...=-.+|+.+...++
T Consensus 389 lE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 389 LEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred ccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 344455666666665432 22333 445667777888899998888764 577788888777777788888888888
Q ss_pred HHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 143 IDCMF----DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--IQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 143 ~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
+++-. ..|+..+...|-.=...|-..|.+-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 77543 567888888888888888888888888888888887775433 468888888899999999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 011714 217 KNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI 296 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (479)
++.- +.+...|...+..--..|..++...+|+++... ++-....|-.....+-..|+...|..++....+.... +..
T Consensus 543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 8753 336677777777767788889999999998876 3345667777777888889999999999988876533 677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.|..-+.......+++.|..+|.+....+..+...+-..-+..+ .+..++|.+++++..+.-+. -...|..+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~-------ld~~eeA~rllEe~lk~fp~-f~Kl~lml 691 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY-------LDNVEEALRLLEEALKSFPD-FHKLWLML 691 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-------hhhHHHHHHHHHHHHHhCCc-hHHHHHHH
Confidence 88888888889999999999999887654333333333333333 48889999999888775432 33578888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (479)
.+.+-+.++.+.|.+.|..-.+. ++.....|..+...--+.|.+-.|..++++..-.+ +.+...|-..|..-.+.|..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 88888888888888887654443 22334567777777778889999999999988776 55888899999999999999
Q ss_pred hHHHHHHHHHHhC
Q 011714 457 YDACALYGAALKQ 469 (479)
Q Consensus 457 ~~A~~~~~~~~~~ 469 (479)
+.|..+.-++++.
T Consensus 770 ~~a~~lmakALQe 782 (913)
T KOG0495|consen 770 EQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-11 Score=108.86 Aligned_cols=222 Identities=17% Similarity=0.143 Sum_probs=172.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 011714 235 FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
+.-.|+...|..-|+..++.... +...|--+...|....+.++.+..|++..+.+.. ++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 34578999999999999987544 3334788888999999999999999999887643 667777777778888999999
Q ss_pred HHHHHHHHHcCCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 315 VSIFKEMVRFGFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
..-|++.+.. .|. ...+..+..+.. +.+.+++++..|++..++-+. -+..|+.....+...++++.|.+.|
T Consensus 414 ~aDF~Kai~L--~pe~~~~~iQl~~a~Y-----r~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 414 IADFQKAISL--DPENAYAYIQLCCALY-----RQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHhhc--ChhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHH
Confidence 9999998865 333 222333333332 678999999999999887544 6789999999999999999999999
Q ss_pred HHHHHcCCC-------CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 394 HHAIEMGHI-------PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 394 ~~~~~~~~~-------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
+...+.... +.+.+-..++ .+.-.+++..|++++++.++.+ +-....|..|.....++|+.++|+++|++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998875222 1122222222 2234599999999999999986 446678999999999999999999999987
Q ss_pred Hh
Q 011714 467 LK 468 (479)
Q Consensus 467 ~~ 468 (479)
..
T Consensus 564 a~ 565 (606)
T KOG0547|consen 564 AQ 565 (606)
T ss_pred HH
Confidence 54
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-11 Score=107.71 Aligned_cols=380 Identities=12% Similarity=-0.019 Sum_probs=266.6
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 75 SIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH 152 (479)
Q Consensus 75 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (479)
++...|+..+...|-.=...|-+.|..-.+..+....+..|+.-. ..+|..-...|.+.+.++-|+.+|...++. ++
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 345677777888888888888888888888888888777665432 457777778888888888888888888765 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 153 PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
.+...|......--..|..++...+|++....- +.....|......+-..|+...|..++....+.... +...|-+.+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 566777777766667788888888888777652 445556666667777778888888888877776443 667777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
..-.....++.|..+|.+.... .|+...|.--+....-.+..++|++++++..+. ++.-...|..+.+.+-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 7777788888888888777653 456666666666666677788888888777765 2222445666667777778888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
.|.+.|..-.+. -|+...+..++.-+- ++.|.+-.|..++++..-+++. +...|-..|+.-.+.|..+.|..+
T Consensus 703 ~aR~aY~~G~k~--cP~~ipLWllLakle----Ek~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 703 MAREAYLQGTKK--CPNSIPLWLLLAKLE----EKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHhcccc--CCCCchHHHHHHHHH----HHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHH
Confidence 887777665443 344444444443332 3556777888888877777666 667777778888888887777776
Q ss_pred HHHHHHcC-----------------------------CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011714 393 LHHAIEMG-----------------------------HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSY 443 (479)
Q Consensus 393 ~~~~~~~~-----------------------------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 443 (479)
..+++..- ..-|+.+...+...+....+++.|++.|.+.++.+ +..-.+|
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~w 854 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAW 854 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHH
Confidence 65554431 12244455566666677778888888888888776 4466778
Q ss_pred HHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 444 DMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
..+...+.+.|.-++-.+++.+...
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888888877777777776654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=118.86 Aligned_cols=373 Identities=15% Similarity=0.146 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS-IMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTF 158 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 158 (479)
+-..+..|.+.|..+..+.+|+..|+-+.+..+-|+.-... .+...+.+...+.+|+++|+..+..-...+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 44455556677777888889999999888877777765443 355677788888889988887775422222 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK------------PDVY 226 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~ 226 (479)
+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|...-.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55555677888899999888887766 577776666777777788888888888887654222 2222
Q ss_pred HHHHHHH-----HHHccCCHHHHHHHHHHHHH---CCCCCCHh-------------hH--------HHHHHHHHhcCChh
Q 011714 227 TYTAVMD-----GFCKVGRSNEAMELLNEAIE---RGVTPNVV-------------TF--------NTLFNGYCKEGTPM 277 (479)
Q Consensus 227 ~~~~li~-----~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-------------~~--------~~l~~~~~~~g~~~ 277 (479)
..+..|. -.-+.+ -..|++..-...+ --+.|+-. .+ -.-...|.+.|+++
T Consensus 358 ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2221111 000100 0111111111110 00001100 00 00112344555555
Q ss_pred hHHHHHHHHHhCCCCCC---------------------HhHHHHH---------------HHHHHhcCChHHHHHHHHHH
Q 011714 278 KGVGLLKLMKKRNCLPD---------------------KISYSTL---------------LNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~---------------------~~~~~~l---------------~~~~~~~~~~~~a~~~~~~~ 321 (479)
.|+++++-+.++.-+.- ...|..+ .......|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 55555444433211100 0000000 00111245566666666665
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH----------------------------------HHHHhCCCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF----------------------------------EKMTKKVSV 367 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~----------------------------------~~~~~~~~~ 367 (479)
+...-......|+.-+.+ ...|++++|++.| .+.... ++
T Consensus 517 l~ndasc~ealfniglt~------e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTA------EALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HcCchHHHHHHHHhcccH------HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 544332223333322222 1334444444444 333332 12
Q ss_pred CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 368 TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
.|+..++-+...|-+.|+-..|.+.+-.-... ++.+..+...|...|....-+++++.+|++..- +.|+..-|..++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 25566666677777777777776655443332 334566667777777778888888999887754 479999999888
Q ss_pred HHH-hccCCHhHHHHHHHHHHhC
Q 011714 448 TKL-DQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 448 ~~~-~~~g~~~~A~~~~~~~~~~ 469 (479)
..| .+.|+++.|.++|+..-++
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 755 5689999999999987553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=106.87 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=203.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEM 212 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 212 (479)
.|++..|++...+-.+.+ +.....|..-..+--..|+.+.+-.++.+..+.--.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766554 2233444555556666777777777777776653345555666666677777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 213 LMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNV-------VTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
++++.+.+.. .........++|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777766533 5566667777777777777777777777776554332 3456666655555555555556665
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCC
Q 011714 286 MKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV 365 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 365 (479)
...+ .+.++..-..++.-+...|+.++|.++..+..+++..|. ...++... +.++.+.-++..+.-.+..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l------~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRL------RPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhc------CCCCchHHHHHHHHHHHhC
Confidence 5443 334566677778888899999999999999988877665 23333332 4566666666666655544
Q ss_pred CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS 439 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 439 (479)
+. ++..+.++...|.+.+.|.+|.+.|+...+ ..|+..+|+.+..++.+.|+.++|.+..++......+|+
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 33 557899999999999999999999998777 478999999999999999999999999998775443443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-12 Score=104.21 Aligned_cols=289 Identities=14% Similarity=0.097 Sum_probs=214.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCh
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV------TTFTILVNSLCKSGRL 171 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~ 171 (479)
.++.++|+++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 578899999999999753 445667778889999999999999999999874 332 2345567778889999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
|.|.++|..+.+.+ .--..+...|+..|-...+|++|+..-+++.+.+..+. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998765 33456788899999999999999999999888755443 23455566666677889999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFE 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 327 (479)
+.+..+.+.+ .+..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|...|+.++....+..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999886433 444555677788999999999999999998875555667888899999999999999999998876444
Q ss_pred cCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh---cCCCHHHHHHHHHHHHHcCC
Q 011714 328 VDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG---KGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 401 (479)
++.. ..+..... ...-.+.|...+.+-... .|+...+..++..-. ..|...+.+.+++.|+...+
T Consensus 282 ~~~~--l~l~~lie-----~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 ADAE--LMLADLIE-----LQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccHH--HHHHHHHH-----HhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 4332 22222221 234455566555544443 367777777777654 34557777888888875533
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=119.57 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 101 QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG--YHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 101 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
..+|+..|...... +.-+......+..+|...+++++|+++|+.+.+.. ...+..+|.+.+--+-+ +-++.++
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45666666664433 23333555566666777777777777777666432 11245555555443321 1122222
Q ss_pred H-HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 179 D-QMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 179 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
. .+.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+..+....+
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 222221 345566777777777777777777777766654211 5666666666666667777777777666543111
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 011714 258 PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL 337 (479)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (479)
+-..|..+.-.|.+.++++.|.-.|++..+-+.. +.+....+...+-+.|+.++|+++++++......-....|....
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 2223444555666777777777777666665432 44555555566666777777777777766544332222222221
Q ss_pred HHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 011714 338 RGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI 402 (479)
Q Consensus 338 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (479)
-.+ ..+++++|+..++++++.-+. +...+-.++..|.+.|+.+.|+.-|--+.+...+
T Consensus 566 il~------~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 566 ILF------SLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHH------hhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 111 336677777777777665443 4556667777777777777777777666654333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-11 Score=105.43 Aligned_cols=331 Identities=11% Similarity=0.020 Sum_probs=233.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHH
Q 011714 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--IQT 192 (479)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 192 (479)
+...|...+......+-+.|..+.|+..|...... .|..-..|..|.... .+.+.+..+.. |.+.| ...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~-----~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVV-----GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHh-----cCcccchHHH
Confidence 44566666666666777888888888888887754 233334444443332 23333322221 11222 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHH
Q 011714 193 YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV--TPNVVTFNTLFNGY 270 (479)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 270 (479)
=-.+..++......+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++.+-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 2235566777778888888888888888776666556666667788899999999999988621 12556777666543
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH-HHhcccchhhc
Q 011714 271 CKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLR-GLCMKSWEEKD 349 (479)
Q Consensus 271 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~ 349 (479)
..... +.++-+-.-.--+-.+.|...+.+-|+-.++.++|...|++.++. .|.......++. -|. +.+
T Consensus 310 ~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyv-----EmK 378 (559)
T KOG1155|consen 310 NDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYV-----EMK 378 (559)
T ss_pred hhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHH-----Hhc
Confidence 32221 222221111101124567778888888899999999999999875 444444444443 343 668
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
+...|..-|+...+-++. |...|-.++++|.-.+.+.-|+-+|+++.... +.|...|.+|..+|.+.++.++|++.|.
T Consensus 379 Nt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred ccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 889999999999987766 88899999999999999999999999998753 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 430 LMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.....+ ..+...+..|.+.|.+.++.++|...|++-++
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999877 44668899999999999999999999988776
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-10 Score=101.50 Aligned_cols=362 Identities=13% Similarity=0.068 Sum_probs=244.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH--H
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF--T 159 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 159 (479)
..|...+....-.+.+.|..+.|+..|......- +-.=..|..|...+ .+. ++...+.. |.+.|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHh-cCcccchHHHHH
Confidence 3455555555555666788888888888776432 22333343333332 222 22222222 222221111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHc
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK--PDVYTYTAVMDGFCK 237 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 237 (479)
-+..++-...+.+++.+-.+.....|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234556666688888888888888887766666666667777889999999999999887321 267788777643 3
Q ss_pred cCCHHHHHHHHHHHH-H-CCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 238 VGRSNEAMELLNEAI-E-RGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
..+.+ +.++.+-. . ... -..|...+.+.|.-.++.++|+.+|++..+.+.. ....|+.+..-|....+...|.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHH--HHHHHHHHHHhccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 22221 22221111 1 112 3456778888889999999999999999887633 4567778888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
+-++.+++... -|-..+-.+-.+|. -.+...-|+-.|++.....+. |+..|.+|+.+|.+.++.++|++.|..
T Consensus 385 ~sYRrAvdi~p-~DyRAWYGLGQaYe-----im~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 385 ESYRRAVDINP-RDYRAWYGLGQAYE-----IMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHhcCc-hhHHHHhhhhHHHH-----HhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987542 35556666666664 457788899999988877655 889999999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CC-CHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 396 AIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IP-SRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+...|-. +...+..+...|-+.++.++|..++++-++. |. .| .......|..-+.+.+++++|-.......
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8876533 5678999999999999999999888887652 21 22 22333345566777788888776554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-12 Score=116.39 Aligned_cols=289 Identities=15% Similarity=0.046 Sum_probs=219.8
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--CKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
=+..+|...|..+... +.-+.++...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567899999996654 34456777889999999999999999999998753 112566777777654322 2233
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 212 ML-MNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 212 ~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
++ +.+... -+-.+.+|.++.++|...++.+.|++.|++.++.... ...+|+.+..-+.....+|+|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 233332 2336889999999999999999999999999886432 77899999999999999999999999887653
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC
Q 011714 291 CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER-MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369 (479)
Q Consensus 291 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (479)
.. +...|-.+.-.|.+.++++.|.-.|+++.+.+ |... ....+...+ .+.|+.++|+.++++....++. |
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~-----~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQ-----HQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHH-----HHhhhhhHHHHHHHHHHhcCCC-C
Confidence 22 33445556678999999999999999998754 4332 222222233 4779999999999999987776 5
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS 439 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 439 (479)
+..--..+..+...+++++|+..++++++. ++-+..++..+...|.+.|+.+.|+.-|--+.+.+.+..
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 655556777888899999999999999885 333466788888999999999999999999988764433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-09 Score=96.59 Aligned_cols=376 Identities=14% Similarity=0.044 Sum_probs=278.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|-...+-=..++++..|..+|+++.... ..+...|...+.+=.++..+..|..+++..+.. .|.-...|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 366667666666677889999999999998765 667778888888889999999999999999875 232334566666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+=-..|++..|.++|++-.+- .|+..+|++.|..=.+-+.++.|..+|+...-. .|+..+|--....=.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 6666789999999999998875 899999999999999999999999999999864 689999999998889999999
Q ss_pred HHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHH---------------------------------
Q 011714 243 EAMELLNEAIER-GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMK--------------------------------- 287 (479)
Q Consensus 243 ~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------------------------- 287 (479)
.+..+|+.+++. |-. .+...+.+....-.+...++.|.-+|+-.+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988764 110 112223333222222333333333332221
Q ss_pred -----------hCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHH---HHHHHhcccchhhccH
Q 011714 288 -----------KRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMNS---LLRGLCMKSWEEKDLL 351 (479)
Q Consensus 288 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~---l~~~~~~~~~~~~~~~ 351 (479)
+.+ +.|..+|-..++.-...|+.+...++|+.++.. ++|-.. .+.. +--.|+.-..-...+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111 235567777777777889999999999998854 344211 1111 1111111111256889
Q ss_pred HHHHHHHHHHHhCCCCCChhh----HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGT----YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 427 (479)
+.+.++|+...+.-+. ...+ |-.......++.+...|.+++-.++ |.-|...+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhhcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999988874322 3334 4444555567889999999998776 4578889999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 428 LFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++.++-+ +-+..+|......-...|+++.|..+|+-++.+.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999986 5588899998888889999999999999998763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-09 Score=97.70 Aligned_cols=273 Identities=13% Similarity=0.056 Sum_probs=198.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (479)
+.........-+...+++.+..++.+.+.+.. ++....+-.-|.++...|+..+-..+=..+++.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444455555666777788888877777653 3455555556667777777777777766776653 336678888888
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhcccchh
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEE 347 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 347 (479)
.|...|+..+|.+.|.+....+.. =...|.....++...|..++|...+..+.+.-..... ..|..+- | .+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme--y-----~~ 392 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME--Y-----MR 392 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH--H-----HH
Confidence 888888888888888877554321 2346777777788888888888888776653211111 2222221 2 24
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCC----chHHHHHHHHHHHcCCCH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM--GHIP----RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~ 421 (479)
.++++.|.+.|.......+. |+..++-+.......+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 58899999999998876555 7888888888888899999999999987732 0111 234688899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 422 DKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
++|+..+++.+... +.+..++..++-.|...|+++.|.+.|.+++. +.|+.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 99999999999886 66899999999999999999999999999876 44554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-09 Score=92.81 Aligned_cols=391 Identities=12% Similarity=0.047 Sum_probs=193.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
-+.+...+...|+.+++.-...+-.-...+---+..++.+.|++++|+..|..+.... .++...+..|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3445667788888888766533322111222335667778899999999998877654 667777777777777788888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+|..+..... .++-.-..|+..-.+.|+-++-..+-+.+... ..--.+|.......-.+.+|+.+|....
T Consensus 109 eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765542 24444455555555666655555555444421 1122233333334445566666666665
Q ss_pred HCCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CC-------------------
Q 011714 218 NDGLKPDVYTYTA-VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--GT------------------- 275 (479)
Q Consensus 218 ~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~------------------- 275 (479)
..+ |.....|. +.-+|.+..-++-+.++++-.++. ++.+....|.......+. |+
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 542 23333322 223444555555555555544443 121222222222222111 11
Q ss_pred --------------hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 276 --------------PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 276 --------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
-+.|++++--+.+. -+..-..++-.|.+.++..+|..+.+++.. ..|.......++.+-.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAAL 329 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHh
Confidence 12222222222211 112223344456677777777777666532 2344444444443332
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCC-----------------------------------ChhhHHHHHHHHhcCCCH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVT-----------------------------------DPGTYGIVIRTLGKGKKT 386 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~ 386 (479)
-+.......+.-|...|+.....+..- |....-.+.++.+..|.+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh
Confidence 211112233344444444333222211 111112345555666666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHH-HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhccCCHhHHHHHHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNN-VIQALCGEGKIDKALLLLFLMYEHAKIPSRTS-YDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
.+|.++|-.+....++ |..+|.+ |.++|.+.+.++.|..++-++ +.+.+..+ ...+.+-|.+.+.+--|-+.|+
T Consensus 410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666655443333 3444443 335566666666665554322 21222222 2333445666666666666666
Q ss_pred HHHhCCCC
Q 011714 465 AALKQGVI 472 (479)
Q Consensus 465 ~~~~~~~~ 472 (479)
.+......
T Consensus 486 ~lE~lDP~ 493 (557)
T KOG3785|consen 486 ELEILDPT 493 (557)
T ss_pred HHHccCCC
Confidence 66554433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-11 Score=115.25 Aligned_cols=270 Identities=11% Similarity=0.024 Sum_probs=191.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVM-----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN---------KNDFFEARKVIDCMF 147 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 147 (479)
..+...|...+.+... .++.++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666666666433 234679999999998764 3456667666665542 245789999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 148 DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
+.+ +.+...+..+..++...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 4478888888889999999999999999999875 556778888999999999999999999999887543 2333
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (479)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++.... +.+....+.+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 334455566789999999999998775323245567778888899999999999998876542 1233445555556676
Q ss_pred cCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCC
Q 011714 308 WGKIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVS 366 (479)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 366 (479)
.| +.|...++.+.+.. -.+.......++.++. |+-+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH-------GEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH-------hhhHHHHHH-HHhhccch
Confidence 67 47777777765421 1222223344444443 777777777 77776554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-11 Score=101.73 Aligned_cols=200 Identities=10% Similarity=0.028 Sum_probs=113.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556666677777777777777777766543 3345566666666677777777777777666543 334555666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+...|++++|.+.+++...... +.....+..+...+...|++++|...+++...... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 66666677777666666654321 11233444455555666666666666665554421 13444555555555566666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK 287 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 287 (479)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666655555544 12233444444555555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-09 Score=96.13 Aligned_cols=359 Identities=13% Similarity=0.044 Sum_probs=241.7
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhh
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWS-VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 138 (479)
.+.+.+++|++.|.+..+. .|+ +.-|.....+|...|+|++.++--.+..+. .|+ +..+..-..++-..|++++
T Consensus 126 f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHH
Confidence 5678899999999998865 345 677888888999999999998888877765 344 4455555566666666655
Q ss_pred HHHH----------------------HHHH--------Hh-CC--CCCCHHHHHHHHHHHHhc-----------------
Q 011714 139 ARKV----------------------IDCM--------FD-NG--YHPNVTTFTILVNSLCKS----------------- 168 (479)
Q Consensus 139 a~~~----------------------~~~~--------~~-~~--~~~~~~~~~~li~~~~~~----------------- 168 (479)
|+.- +... .+ .+ +-|+.....+....+...
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 4321 1111 11 11 224444444433333210
Q ss_pred --------C---ChHHHHHHHHHHhhC-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 169 --------G---RLKEALEVLDQMGRI-GCKP--N---------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 169 --------g---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
+ .+..|.+.+.+-... ...+ + ..+.......+.-.|+.-.|..-|+........++
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~- 360 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN- 360 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-
Confidence 0 122222222211100 0011 1 11222222334456788889999999888754433
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGL 305 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (479)
..|--+..+|...++.++.+..|.+..+.+.. +..+|..-.+.+.-.+++++|+.=|++.+..... +...|.-+.-+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHH
Confidence 33777788899999999999999999987654 6778888888888899999999999999886422 456677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-----Ch--hhHHHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-----DP--GTYGIVIR 378 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~--~~~~~l~~ 378 (479)
.+.++++++...|++..++ ++--...++.....+. .+++++.|.+.|+...+..+.. +. .+--.++.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLt-----DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILT-----DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHh-----hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 7889999999999998875 3334566666666665 7799999999999887643321 11 11222222
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
. --.+++..|.++++++.+.+.+ ....|..|...-.+.|+.++|+++|++....
T Consensus 513 ~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 L-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred h-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 2348999999999999986443 4567999999999999999999999987754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=111.23 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=184.7
Q ss_pred CCCHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 011714 117 APNSWTFSIMIRCYCN-----KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK---------SGRLKEALEVLDQMG 182 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 182 (479)
..+...|...+.+... .+++++|.+.|++..+.. +-+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666666655322 234679999999999764 3356667666665542 245899999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 011714 183 RIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT 262 (479)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (479)
+.+ +.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...++++.+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 875 557888888989999999999999999999987532 5778888899999999999999999999987543 2333
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHh
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL-RGLC 341 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 341 (479)
+..++..+...|++++|+..++++.....+-+...+..+..++...|+.++|...+.++... .|+.......+ ..+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34455567778999999999999876643324556777888889999999999999987654 34433333333 3333
Q ss_pred cccchhhccHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTK-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
..| +.+...++.+.+ ....+....+..++.++.-. .+.+..+ +++.+.
T Consensus 487 -----~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 -----QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGE--AIAEKMW-NKFKNE 535 (553)
T ss_pred -----ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhh--hHHHHHH-HHhhcc
Confidence 223 467766666543 12222333346666666633 3333333 666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-10 Score=100.03 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=147.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667777888888888888888888887653 4456777778888888888888888888887764 445667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
.+...|++++|.+.+++....... .....+..+..++...|++++|...+++..+.... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 888888888888888888764222 23455666777788888888888888887775322 4556777778888888888
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888887765 233556666667777777888888777766654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-11 Score=100.73 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
|..--+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-.+|.+..++..|+.++.+-.+. ++-++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333467889999999999999999998876 456778899999999999999999999988876 3445555567788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
.+-..++.+.|.++|+...+.. ..+......+...+. -.++.+.|+..|+++.+.|.. ++..|+.+.-+|...
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yf-----Y~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYF-----YDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeeccc-----cCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 8889999999999999988753 223333333333333 448999999999999999887 889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
++++-++.-|+++...--.|+ ..+|..+.......||+..|.+.|+.....+ ..+...++.|.-.-.+.|++++|..
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999999999887644444 4678888888899999999999999988776 5577889999988899999999999
Q ss_pred HHHHHHhCC
Q 011714 462 LYGAALKQG 470 (479)
Q Consensus 462 ~~~~~~~~~ 470 (479)
+++.+....
T Consensus 451 ll~~A~s~~ 459 (478)
T KOG1129|consen 451 LLNAAKSVM 459 (478)
T ss_pred HHHHhhhhC
Confidence 999987643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-08 Score=95.03 Aligned_cols=389 Identities=12% Similarity=0.069 Sum_probs=255.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 74 DSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP 153 (479)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (479)
..+.......+...|..+.-++...|+++.+.+.|++.... .-.....|..+...|...|.-..|..+++........|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 44444445679999999999999999999999999997753 24456789999999999999999999998877543234
Q ss_pred -CHHHHHHHHHHHH-hcCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 011714 154 -NVTTFTILVNSLC-KSGRLKEALEVLDQMGRI--GC--KPNIQTYNCLLKGLCYV-----------GRVEEAYEMLMNV 216 (479)
Q Consensus 154 -~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 216 (479)
+...+-..-..|. +-+.+++++++-.+.... +. ......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 3444443344444 356777877777766651 11 12234455555444332 1245678888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCH
Q 011714 217 KNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-NCLPDK 295 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 295 (479)
.+.+.. |......+.--|+..++.+.|.+...+..+.+...+...|..+.-.+.-.+++.+|+.+.+..... |. |.
T Consensus 471 v~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~ 547 (799)
T KOG4162|consen 471 VQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NH 547 (799)
T ss_pred HhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hh
Confidence 776533 333333344457778899999999999999866678889999999999999999999998876543 11 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---------------------------------------------------Hc
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMV---------------------------------------------------RF 324 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------------------------------------------~~ 324 (479)
.....-+..-...++.+++......++ ..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 000000111111122222211111110 00
Q ss_pred C---------C--CcCHHHHHH-HHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 325 G---------F--EVDERMMNS-LLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 325 ~---------~--~~~~~~~~~-l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+ . .|+...+.. .+.......+...+..+++...+.+.....+. ....|......+...|.+++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHH
Confidence 0 0 011000000 00000000012445666777666666654433 456677777888889999999999
Q ss_pred HHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHH--HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 393 LHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALL--LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 393 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
|..+... .|+ .....++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.+.|.+.|..+++.
T Consensus 707 f~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9988874 444 5678899999999999888887 999999987 669999999999999999999999999999885
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 784 e 784 (799)
T KOG4162|consen 784 E 784 (799)
T ss_pred c
Confidence 3
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-11 Score=100.67 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
+.+..+|.+.|.+.+|.+-|+...+. .|-+.||..|-..|.+..+...|+.++.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34445555555555555555544433 344445555555555555555555555554433 222333333444444445
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555554432 233444444444455555555555555555555543 4445555555555555555555555
Q ss_pred HHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 249 NEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 249 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
++....-..|+ ...|..+.......|++..|.+.|+-...++.. ....++.|.-.-.+.|++++|..++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 54444322121 223444444444555555555555544443321 33444444444445555555555554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=108.92 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=162.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 71 DIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
+++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556677889999999999999999999999888 8888887777888889999999988888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCCC-CCHHH-------------HHHHHHHHHhcCCHHHH
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKE---ALEVLDQMG----RIGCK-PNIQT-------------YNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~~~~~~a 209 (479)
.|.+.+|..|..+|...||+.. +.+.+..+. ..|+- |.... -...+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788899999999999998654 323222221 11211 11111 01222333334444555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
++++..+...... . ++..+++-+.... ....++........-.|+..+|..++.+-.-.|+.+.|..++..|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 5554443322111 0 1111233333322 223333333222211477788888888888888888888888888888
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 888777777777654 7777777888888888888888888777666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-11 Score=112.67 Aligned_cols=278 Identities=14% Similarity=0.127 Sum_probs=181.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
.++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777788888888888888888888888887 8877776666777788888888888877776665
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhHHH
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-RNCLPDKISYS 299 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 299 (479)
.|...||..|..+|...||... |+...+ ....+...+...|.-.....++..+.- .+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 5677888888888888888765 222222 122334455556655555555544321 223344433
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+.-....|-++.+.+++..+......- .+..+++-.. .....+++-..+.+.... .|++.+|..++.+
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv----~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNV----VDNTPVEKLLNMCKSLVE---APTSETLHAVLKR 213 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhc----cCCchHHHHHHHHHHhhc---CCChHHHHHHHHH
Confidence 2333445566666666665543221111 1111233222 122223333333333322 5678888888888
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhH
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (479)
-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+-.+.+.|....
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 88899999999999999988888888877777755 77888888888888888888998888877777766655433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-08 Score=91.11 Aligned_cols=393 Identities=15% Similarity=0.125 Sum_probs=211.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
.-|+.++|....+.-.+.++. +.+.|..+.-.+....++++|++.|..+...+ +.|...+.-+.-.-++.++++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 345556666665555554443 56666666666666666777777777666655 5556666666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHH
Q 011714 142 VIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLL------KGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~ 214 (479)
....+.+.. +-....|..+..++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666655542 2344556666666666677777777666665543 234444443222 22345566666666555
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChhhHH-HHHHHHHhCCC
Q 011714 215 NVKNDGLKPDVYTY-TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN-TLFNGYCKEGTPMKGV-GLLKLMKKRNC 291 (479)
Q Consensus 215 ~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~~~~~~~~~~ 291 (479)
.-... ..|...+ ..-...+.+.+++++|..++..++... ||..-|. .+..++.+..+.-+++ .+|....+.-
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y- 284 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY- 284 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-
Confidence 44332 1122222 233445566677777777777766652 3443333 3333333233333333 4444433321
Q ss_pred CCCHhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH-HHHHHHHHHhCC----
Q 011714 292 LPDKISYSTL-LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED-AYQVFEKMTKKV---- 365 (479)
Q Consensus 292 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~---- 365 (479)
|....-..+ +.......-.+....++..+.+.|+++--..+.++..-- .+..-+++ +..+...+...+
T Consensus 285 -~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p-----~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 285 -PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDP-----EKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred -cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhch-----hHhHHHHHHHHHHHhhcccccCCCc
Confidence 111000000 111111111222334445555666543222222221110 00000011 111111111110
Q ss_pred ------CCCChh--hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 011714 366 ------SVTDPG--TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAK 436 (479)
Q Consensus 366 ------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 436 (479)
..|... ++-.++..+-..|+++.|..+++.+.+. .|+. ..|..=.+.+...|++++|..++++..+.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 134443 3445678888999999999999988774 5553 345555578899999999999999999886
Q ss_pred CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 437 IPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+|...=..-++-..++++.++|.++.-..-+.|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44555444566667888999999998888777664
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.8e-10 Score=102.13 Aligned_cols=238 Identities=19% Similarity=0.093 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIER-----GV-TPNVV-TFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC- 291 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~- 291 (479)
..+...+...|...|+++.|+.+++..++. |. .|.+. ..+.+...|...+++++|+.+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566778888888888888888776653 21 12332 2334667788888888888888887542 21
Q ss_pred CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCcCHHHHH-HHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 292 LPD-KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-----G-FEVDERMMN-SLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 292 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
.|. ..+++.|..+|.+.|++++|...+++..+. + ..|...... .+...+ ...+.+++|..++....+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~-----~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL-----QSMNEYEEAKKLLQKALK 353 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH-----HHhcchhHHHHHHHHHHH
Confidence 122 356777778888899988888887776531 1 122222222 222222 255788888888876543
Q ss_pred C---CCCC----ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C--CC-chHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 364 K---VSVT----DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG----H--IP-RTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 364 ~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
. -+.+ -..+++.|...|...|++++|.+++++++... - .+ ....++.+...|.+.+.+++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 1 1111 23679999999999999999999999887541 1 11 24467888899999999999998888
Q ss_pred HHHh----CCC-CCC-HhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 430 LMYE----HAK-IPS-RTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 430 ~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+... .|. .|+ ..+|..|+..|..+|++++|.++.+..+
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7553 222 233 4679999999999999999999998876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-07 Score=87.17 Aligned_cols=402 Identities=14% Similarity=0.089 Sum_probs=271.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
..+++.++....+..+..+...+.+.+.. +-...+.....-.+...|+.++|........+.. ..+.+.|+.+.-.+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 45667777777888899999999888743 3356666666677777899999999888877654 566788999999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
...++++|++.|......+ +.|...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 5578888888888888899999888888887763 3345678889999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011714 212 MLMNVKNDG-LKPDVYTYTAVM------DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLK 284 (479)
Q Consensus 212 ~~~~~~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 284 (479)
++++..+.. -.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999998764 346666554333 2345678888888887655432 22123333455677889999999999999
Q ss_pred HHHhCCCCCCHhHHHH-HHHHHHhcCChHHHH-HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 285 LMKKRNCLPDKISYST-LLNGLLKWGKIRPAV-SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 285 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
.++... ||..-|.. +..++.+..+..++. .+|....+.- |.......+--... ....-.+..-.++....
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVL----NGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHh----CcchhHHHHHHHHHHHh
Confidence 999875 56555554 444444333333333 6666665431 11111111111111 11233344445556666
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----------CCCchHHH--HHHHHHHHcCCCHHHHHH
Q 011714 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM----G----------HIPRTITF--NNVIQALCGEGKIDKALL 426 (479)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~ 426 (479)
++|.+ .++..+...|-.-...+-..++.-.+... | -+|....| ..++..+-..|+++.|..
T Consensus 316 ~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 66654 34555555554433222111221111111 1 13454444 456678889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++..+++. +--+..|..-.+.+..+|.+++|..+++++.+..
T Consensus 393 yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 393 YIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 999999874 2234556666788999999999999999987753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-09 Score=97.26 Aligned_cols=293 Identities=17% Similarity=0.088 Sum_probs=161.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-----
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----- 237 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----- 237 (479)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. +..-|..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445566666666666554332 2222334445556666666666666666666665421 33333333333311
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP-MKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
..+.+....+++++.+.- |.......+.-.+.....+ ..+..++..+..+|++ .+|..+-..|....+..-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 123455566666655442 2222222222222221122 2344455555666654 234444444444444333444
Q ss_pred HHHHHHHc----C----------CCcCHHHH--HHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 317 IFKEMVRF----G----------FEVDERMM--NSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 317 ~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
++...... + -.|....+ ..+... +...|++++|+..++......+. .+..|..-.+.+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh-----yd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil 238 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH-----YDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 44443321 1 11222111 112222 24668888888888888877654 467788888888
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh------h--HHHHHHHHhc
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRT------S--YDMLITKLDQ 452 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~ 452 (479)
-+.|++.+|.+.++.+...+.. |..+-+..+..+.++|+.++|.+.+....+.+..|... . ....+.+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543 66666666777788888888888888777665422211 1 1345567888
Q ss_pred cCCHhHHHHHHHHHHhC
Q 011714 453 LEKSYDACALYGAALKQ 469 (479)
Q Consensus 453 ~g~~~~A~~~~~~~~~~ 469 (479)
.|++..|+..|....+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 88888888887776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-08 Score=95.16 Aligned_cols=290 Identities=14% Similarity=0.085 Sum_probs=140.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS----- 168 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 168 (479)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 344556666666666553332 12223344455556666666666666666666554 22333334444433111
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV-EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555666555432 3222222222222221122 2234444445555543 2333444444433333333444
Q ss_pred HHHHHHC--------------CCCCCHh--hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 248 LNEAIER--------------GVTPNVV--TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 248 ~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
+...... .-+|+.. ++..+...|-..|++++|++++++.+.+... .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 4333221 0123332 3344455666667777777777766665321 255566666666677777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh--------hHHHHHHHHhcC
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG--------TYGIVIRTLGKG 383 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~ 383 (479)
.+|.+.++.....+.. |..+-+.....+. +.|++++|.+++....+.+..|-.. -....+.+|.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L-----Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLL-----RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHH-----HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666654321 3333333333332 5567777777766665554322111 113345667777
Q ss_pred CCHHHHHHHHHHHH
Q 011714 384 KKTDEALIHLHHAI 397 (479)
Q Consensus 384 g~~~~A~~~~~~~~ 397 (479)
|++..|++.|..+.
T Consensus 319 ~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 319 GDYGLALKRFHAVL 332 (517)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-08 Score=89.21 Aligned_cols=284 Identities=14% Similarity=0.114 Sum_probs=213.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
..+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+=.++.+.- +-...+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 4466666666777788899999999999998875 6777778788889999999999888888888763 3367889998
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcC
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR--NCLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 309 (479)
.-.|...|+..+|.+.|.+....... -...|-.+...|+..|..++|+..+...-+. |.. -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 88888899999999999988665322 2447889999999999999999988877553 211 12223 333577889
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCC--C---C-CChhhHHHHHHHHhcC
Q 011714 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKV--S---V-TDPGTYGIVIRTLGKG 383 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~~l~~~~~~~ 383 (479)
+.+.|.+.|.+.... .|+......-+.... -..+.+.+|...|+.....- . . -...+++.++.++.+.
T Consensus 395 n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvva----y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI--APSDPLVLHELGVVA----YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhhhhhhhee----ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 999999999988754 444433332222222 14588899999998766211 1 1 1234688999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
+.+++|+..+++.+... +.+..++.++.-.|...|+++.|+..|.+..-. .|+-.+-..++..+
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 99999999999998863 447889999999999999999999999998876 46655555555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-12 Score=77.48 Aligned_cols=49 Identities=31% Similarity=0.576 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-12 Score=77.30 Aligned_cols=47 Identities=40% Similarity=0.827 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
|..+||.+|++|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-07 Score=83.80 Aligned_cols=228 Identities=15% Similarity=0.156 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HhHHHHHHHHHHhc
Q 011714 238 VGRSNEAMELLNEAIERGVTPN------VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD---KISYSTLLNGLLKW 308 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 308 (479)
.|+..+-...+.++++. +.|. ...|..+...|-.+|+.+.|..+|++..+...+-- ..+|......-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566667777777654 2221 23577788888889999999999988877644321 23455555555667
Q ss_pred CChHHHHHHHHHHHHcCC-----------CcCHHHHHHHHH-HHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 309 GKIRPAVSIFKEMVRFGF-----------EVDERMMNSLLR-GLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
.+++.|.++.+......- ++....++++.- .+..-..+..|-++....+|+++....+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 778888888777653211 111112221110 00000013457788888888888876554 44444444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHH---cCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHH-HHH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRT-ITFNNVIQALC---GEGKIDKALLLLFLMYEHAKIPSR-TSYDMLI-TKL 450 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~-~~~ 450 (479)
...+-.+.-++++.+.+++-+..-..|+. ..|+..+.-+. .....+.|..+|++..+. .+|.. .+.-.+. ..-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~-Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG-CPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence 44555667788888888765544223443 45666665443 244688899999988884 34433 2322222 222
Q ss_pred hccCCHhHHHHHHHHHHh
Q 011714 451 DQLEKSYDACALYGAALK 468 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~ 468 (479)
.+.|-...|+++|+++-.
T Consensus 597 Ee~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 345778888888888643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-07 Score=83.54 Aligned_cols=398 Identities=12% Similarity=0.085 Sum_probs=234.7
Q ss_pred hcCChhhHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 62 KASPLKERIDIFDSIKK-DGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
+++.+..-...|+.... ..+.....+|...+......+-++-++.+|++-.+. ++..-+-.|..++..+++++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 45555555555555432 222333455666666666666666677777666643 2333566666667777777777
Q ss_pred HHHHHHHhC------CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 011714 141 KVIDCMFDN------GYHPNVTTFTILVNSLCKSGRLKE---ALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 141 ~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a 209 (479)
+.+...+.. ..+.+-..|..+-+..+++-+.-. ...+++.+... -+|. ..|.+|..-|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 776666522 113344555555555554433222 22333333322 2332 4678888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHCCC-----------
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVG----------------------RSNEAMELLNEAIERGV----------- 256 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------- 256 (479)
..+|++.... ..+..-|..+.++|..-. +++-.+.-|+.+...+.
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 8888887765 224555556666654321 11222223333332210
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP------DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
+-++..|..-+. ...|+..+.+..+.+..+. +.| -...|..+.+.|-..|+.+.|..+|++..+.... ..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v 421 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TV 421 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-ch
Confidence 011222222222 2245566666677666553 111 2345777888899999999999999998865433 22
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV----------T-------DPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
.-+..+-..++ ....+..+++.|+.+.+........ | +...|...++..-..|-++....++
T Consensus 422 ~dLa~vw~~wa-emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 422 EDLAEVWCAWA-EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHHHH-HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22223333332 1112567788888888776432111 1 2345677777777788899999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhc---cCCHhHHHHHHHHHHhC
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR-TSYDMLITKLDQ---LEKSYDACALYGAALKQ 469 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 469 (479)
+++.+..+. ++.+.......+-...-++++.+++++-+.....|+. ..|+..+..+.+ .-+.+.|..+|+++++
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 999987665 4444444444556677789999999988887666665 567777766554 2468999999999999
Q ss_pred CCCCC
Q 011714 470 GVIPQ 474 (479)
Q Consensus 470 ~~~p~ 474 (479)
|..|.
T Consensus 579 ~Cpp~ 583 (835)
T KOG2047|consen 579 GCPPE 583 (835)
T ss_pred cCCHH
Confidence 55554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-07 Score=79.39 Aligned_cols=366 Identities=11% Similarity=0.091 Sum_probs=205.3
Q ss_pred hHHHHHHHHHH--hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRI--KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
....+.++..+ .-|+.++|+.++..+...+ .++...+-.|.-...-.|.+.+|..+-.... .++-.-..++.
T Consensus 56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfh 129 (557)
T KOG3785|consen 56 EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFH 129 (557)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHH
Confidence 34566666653 6799999999999887754 4567777777777788899999988766543 23344455556
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL-KGLCYVGRVE 207 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~ 207 (479)
..-+.++-++-..+.+.+... ..---+|.+.....-.+++|+++|.+.... .|.-...|.-+ -+|.+..-++
T Consensus 130 lahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhh
Confidence 666777777766666665432 223333444444445678888888887765 35555555433 3456666677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC---------------------------------HHHHHHHHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCK--VGR---------------------------------SNEAMELLNEAI 252 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~---------------------------------~~~a~~~~~~~~ 252 (479)
-+.++++-..+.- +-++...|..+....+ .|+ -+.|++++-.+.
T Consensus 203 vsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 203 VSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred hHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 7777777666541 2123333322211111 111 122222222222
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK-------IRPAVSIFKEMVRFG 325 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~ 325 (479)
+. .|. .--.|+-.|.+.++..+|..+.+++... .|-......+. ....|+ .+-|.+.|...-.++
T Consensus 282 ~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 21 111 2234555667778888888776655321 22222222222 122222 233334443332222
Q ss_pred CCcC--------------------HHHHHHHHHHHhc----------ccchhhccHHHHHHHHHHHHhCCCCCChhhH-H
Q 011714 326 FEVD--------------------ERMMNSLLRGLCM----------KSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY-G 374 (479)
Q Consensus 326 ~~~~--------------------~~~~~~l~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 374 (479)
...| ..+|..-+.+|.. ++....|.+.+|.++|-.+...... |..+| .
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence 2111 1111111111110 0012458889999999888766555 44444 5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN-NVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYD 444 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (479)
.+.++|.+.+.++.|.+++-++. .+.+..+.. .+..-|.+++.+=-|-+.|+.+...+ |++..|.
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWe 498 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWE 498 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccC
Confidence 66789999999999988775442 223334433 34467889999999999999887764 6777664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-08 Score=89.16 Aligned_cols=389 Identities=14% Similarity=0.060 Sum_probs=246.0
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 136 (479)
...+..++.+.|+..|......++. |...|.-=..+++..|++++|++=-.+..+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4457789999999999888766655 7788888889999999999998877776655 455 67899999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHhhC---CCCCCHHHHHHHHHHHHhc-------
Q 011714 137 FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA---LEVLDQMGRI---GCKPNIQTYNCLLKGLCYV------- 203 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------- 203 (479)
++|+..|.+-++.. +.+...++-+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988764 44667777787777211000000 0111111100 0000111222332222111
Q ss_pred ---CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHccCCHHHHHH
Q 011714 204 ---GRVEEAYEMLMNV-----KNDG-------LKP----------------------DVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 204 ---~~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.++..+...+... ...+ ..| -..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111121111100 0000 011 01123556677777888999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHH-------HHHHhcCChHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLL-------NGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~a~~~~~ 319 (479)
.+...++.. -+..-++....+|...|.+.++....+...+.|.. ...-|+.+. .++.+.++++.+...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 998888764 35666777788899999988888887777666533 223333333 35566778888888888
Q ss_pred HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 320 EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
+.+..-..|+... +....+++....+...-.++.. ..--..-...+.+.|++..|++.|.+++..
T Consensus 323 kaLte~Rt~~~ls--------------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 323 KALTEHRTPDLLS--------------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHhhhhcCHHHHH--------------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 8765433333211 2244455555544443332221 111222366677888888888888888876
Q ss_pred CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 400 GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
. +-|...|..-.-+|.+.|.+..|+.-.+..++.+ ++....|..=+.++....++++|.+.|++.++..
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 3367788888888888888888888888888775 4455667666777777888888888888887754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-07 Score=79.91 Aligned_cols=299 Identities=12% Similarity=0.053 Sum_probs=190.2
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 011714 157 TFTILVNSLCK--SGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV-YTYTAVM 232 (479)
Q Consensus 157 ~~~~li~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 232 (479)
+....+.+++. .++-..+...+--+... -++-|+.....+...+...|+.++|+-.|++....+ |+. .......
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya 273 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYA 273 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHH
Confidence 33334444433 34444444444333322 245577778888888888888888888888877542 221 1222223
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
-.+...|+++....+...+.... +-....|-.-........++..|+.+-++.++.+.. +...|..-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchH
Confidence 33456777777777776665431 123334444455556677888888888877765422 3445555556677888888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHh-cCCCHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVI-RTLG-KGKKTDEAL 390 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 390 (479)
+|.-.|+...... +.+...|..++..|. ..|.+.+|...-+...+.-. .+..+...+. ..+. ...--++|.
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYL-----A~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYL-----AQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHH-----hhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHH
Confidence 8888888876542 246678888888887 55777777766655443311 1344444442 2222 223357788
Q ss_pred HHHHHHHHcCCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 391 IHLHHAIEMGHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+++++.+. +.|+. ...+.+...|...|..++++.++++.... .||....+.|.+.+...+.+++|++.|..+++.
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88877665 34553 34566667788888899999998888765 478888888888888888899999888888774
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-08 Score=84.57 Aligned_cols=314 Identities=12% Similarity=0.064 Sum_probs=220.4
Q ss_pred CCHHhHHHHHHHHH--hcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 118 PNSWTFSIMIRCYC--NKNDFFEARKVIDCMFDN-GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 118 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
|+......-+.+++ ..++-..+...+-.+... -++.|+.....+..++...|+.++|+..|++....+ +-+.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 33333333343333 344444444444444322 356678889999999999999999999999988663 22333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
.....+.+.|+.+....+...+.... .-+...|..-........+++.|+.+-++.++.... ++..+-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 44555678899999888888876542 113333333344445667889999998888876433 5555655567788999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHhcccchhhccHHH
Q 011714 275 TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL-RGLCMKSWEEKDLLED 353 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~ 353 (479)
++++|.--|+..+... +.+..+|..|+.+|...|.+.+|...-....+. +..+..++..+- ..+. .....-++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~----~dp~~rEK 422 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF----PDPRMREK 422 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec----cCchhHHH
Confidence 9999999999887753 246889999999999999999998877765543 222333333331 1221 24455688
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
|..++++.....+. -....+.+...+...|+.+.++.++++.+. ..||....+.|.+.+...+.+.+|+..|.....
T Consensus 423 AKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 423 AKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999887765443 335677888899999999999999999887 468999999999999999999999999999988
Q ss_pred CCCCCCHhhHH
Q 011714 434 HAKIPSRTSYD 444 (479)
Q Consensus 434 ~~~~~~~~~~~ 444 (479)
.+ +.+..+..
T Consensus 500 ~d-P~~~~sl~ 509 (564)
T KOG1174|consen 500 QD-PKSKRTLR 509 (564)
T ss_pred cC-ccchHHHH
Confidence 75 33444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-08 Score=90.28 Aligned_cols=218 Identities=14% Similarity=0.030 Sum_probs=145.1
Q ss_pred CChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 64 SPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
...+.++.-+.++..... .-....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666676766664322 1224567778888888999999999999988765 556788899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..|+...+.. +-+..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999988764 3356778888888888999999999999888763 433222222223445678889988887655332
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER---GV---TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.++...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2232221 22 22334555443 244444321 11 0123467778888888888888888888887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-09 Score=96.89 Aligned_cols=237 Identities=19% Similarity=0.178 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhC-----C--C
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSY-----G-LAPNSWT-FSIMIRCYCNKNDFFEARKVIDCMFDN-----G--Y 151 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 151 (479)
.+...|...|...|+++.|+.++++..+. | ..|...+ .+.+...|...+++.+|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666554432 1 0122221 223445555555655555555555421 1 0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-----GC-KPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKND---GL 221 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 221 (479)
+.-..+++.|..+|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 111234445555555556555555555443221 10 1111 12344444555555555555555543321 01
Q ss_pred CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----C-CCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHh--
Q 011714 222 KP----DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-----G-VTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-- 288 (479)
Q Consensus 222 ~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 288 (479)
.+ -..+++.+...|.+.|++++|.+++++++.. | ..+ ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 1234555555555555555555555555432 0 011 122344455555555555555555544322
Q ss_pred --CCC-CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 289 --RNC-LP-DKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 289 --~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.|. .| ...+|..|...|...|+++.|.++...+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111 11 12445555555555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-08 Score=79.51 Aligned_cols=194 Identities=18% Similarity=0.085 Sum_probs=99.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 125 IMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
.|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34444555555555555555555543 2234455555555555555555555555555443 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 205 RVEEAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
++++|...|++....- ......+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 5555555555554431 1112344555555555556666666666555554222 2334445555555556666666555
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 284 KLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+.....+. ++..+....|+.-...|+.+.+.++=..+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555443 455555555555555555555555444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-08 Score=87.91 Aligned_cols=219 Identities=17% Similarity=0.051 Sum_probs=158.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011714 98 LNEQETAVKFFSEASSYG-LAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 174 (479)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 346677888888877542 1222 4568888889999999999999999999875 45789999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
.+.|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999864 3457788889999999999999999999998764 33222222233345677899999999776543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 255 GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NC--L-PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
. .++...+ .......|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 2233345665544 344444421 11 1 123578889999999999999999999998764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-07 Score=83.06 Aligned_cols=202 Identities=14% Similarity=0.017 Sum_probs=94.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCH--hHHHHHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDK--ISYSTLLNGL 305 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 305 (479)
..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555666666666666666654322 344555566666666666666666665554321 1121 2334455566
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CcCHHHH-H--HHHHHHhccc-chhhccHHHHHHHHHHHHhCCC-CCChhhHHHHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFGF-EVDERMM-N--SLLRGLCMKS-WEEKDLLEDAYQVFEKMTKKVS-VTDPGTYGIVIRT 379 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 379 (479)
...|++++|..++++...... .+..... . .++..+...+ ......++...... ..... ............+
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~---~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA---AWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH---HhhcCcccchHHHHHHHHH
Confidence 666666666666666543221 1111111 1 1111111000 00001111111111 11100 1111222346667
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCC--------chHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIP--------RTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+...|+.++|..+++.+......+ ..........++...|++++|.+.+......
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888776532110 0111122223455778888888887776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-08 Score=78.22 Aligned_cols=198 Identities=13% Similarity=0.016 Sum_probs=132.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
...|.-.|...|++..|..-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|...-.+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3456667777777777777777777664 4456677777777777777777777777777654 3466677777777777
Q ss_pred cCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIG-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.|++++|...|++....- ..--..+|..+.-+..+.|+++.|...|++.++.... ...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777766532 1112346666777777777777777777777665322 34455566667777777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
+++.....+. ++..+.-..|..-...|+.+.+-++=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777666654 56666666667777777777666665555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-06 Score=75.81 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
..+..+-.....+..++|+...+.+...++ -+...+..=+-++.+.+++++|+.+.+.-... ..+..-+---..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 444555556677889999999999987763 47788888888999999999998555432210 111111112233444
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
+.+..++|+..++... +.+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7888999998888332 2244466666777888999999999999987654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-06 Score=81.22 Aligned_cols=305 Identities=13% Similarity=0.029 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH---H
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGL-APNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI---L 161 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 161 (479)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. |.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344444444445555555555554433210 1111 111222334445666666666666665542 223333331 1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
.......+..+.+.+.+..... ..+........+...+...|++++|...+++..+... .+...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCH
Confidence 1111123334444444433111 1122223334445566666677777777766666532 2445556666666667777
Q ss_pred HHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHhHH-H--HHHHHHHhcCChHHH
Q 011714 242 NEAMELLNEAIERGV-TPNV--VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDKISY-S--TLLNGLLKWGKIRPA 314 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a 314 (479)
++|...+++..+... .++. ..|..+...+...|++++|+.++++...... .+..... + .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 777777666655421 1121 2344556666667777777777766643321 1111111 1 222223333333322
Q ss_pred HHH--HHHHHHcCCCcCHHHHH--HHHHHHhcccchhhccHHHHHHHHHHHHhCCCC------C--ChhhHHHHHHHHhc
Q 011714 315 VSI--FKEMVRFGFEVDERMMN--SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV------T--DPGTYGIVIRTLGK 382 (479)
Q Consensus 315 ~~~--~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~ 382 (479)
.++ +..............+. .....+. ..|+.+.|..+++.+...... . .....-...-++..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALA-----GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 222 11111100000111111 1222222 456777777777766542211 0 11122223344567
Q ss_pred CCCHHHHHHHHHHHHHc
Q 011714 383 GKKTDEALIHLHHAIEM 399 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~ 399 (479)
.|+.++|.+.+......
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88889998888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-06 Score=79.49 Aligned_cols=364 Identities=12% Similarity=0.058 Sum_probs=237.4
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHH-hcCChhhH
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAP-NSWTFSIMIRCYC-NKNDFFEA 139 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~~~~~~a 139 (479)
..|.+..+.+.|++....-+. ..+.|+.+...+...|.-..|+.++++.....-.| +...+-..-..|. +.+..+++
T Consensus 335 ~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 456777888888887654333 67889999999999999999999999866442224 3344444444444 45677777
Q ss_pred HHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 011714 140 RKVIDCMFDN--G--YHPNVTTFTILVNSLCKS-----------GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG 204 (479)
Q Consensus 140 ~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (479)
+.+..+.... + -......|..+.-+|... ....++++.+++..+.+ +.|..+...+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 7777666651 1 122344555555555432 12467888888887765 334444444555678889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCC------------------CCHhhHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER-GVT------------------PNVVTFNT 265 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~~~~~~~ 265 (479)
+.+.|....++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |.. -...|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999998866778999999999999999999999999887654 210 00111111
Q ss_pred HHHHHH------h-----------------cCChhhHHHHHHHHH--------hCC---------CC--CC------HhH
Q 011714 266 LFNGYC------K-----------------EGTPMKGVGLLKLMK--------KRN---------CL--PD------KIS 297 (479)
Q Consensus 266 l~~~~~------~-----------------~g~~~~a~~~~~~~~--------~~~---------~~--~~------~~~ 297 (479)
++..+- . .++..++.+....+. ..| .. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 221111 0 011111211111110 001 00 11 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVI 377 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 377 (479)
|......+.+.+..++|...+.+..... ......+...-..+ ...|..++|...|......++. ++.+..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~-----~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala 725 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLL-----EVKGQLEEAKEAFLVALALDPD-HVPSMTALA 725 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHH-----HHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 3344556677777778877777765432 11222222221222 2568999999999988877655 567889999
Q ss_pred HHHhcCCCHHHHHH--HHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 378 RTLGKGKKTDEALI--HLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 378 ~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.++.+.|+..-|.. ++..+++.+.. +...|..+...+.+.|+.++|.+.|....+..
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999888888 99999987543 68899999999999999999999999888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-06 Score=90.75 Aligned_cols=337 Identities=11% Similarity=0.025 Sum_probs=207.4
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C----CCCH--HHHHHHHHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--C----KPNI--QTYNCLLKGL 200 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~--~~~~~l~~~~ 200 (479)
.....|+++.+..+++.+.......+..........+...|+++++..++......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777776655321111222333444555667899999999998775421 0 1111 1222334456
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYC 271 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~ 271 (479)
...|++++|...+++........+. ...+.+...+...|++++|...+++.... |.. .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999988763111121 23455666778899999999999888653 111 11234556677888
Q ss_pred hcCChhhHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHH--HHHHHHHH
Q 011714 272 KEGTPMKGVGLLKLMKKR----NCL--P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEVDERM--MNSLLRGL 340 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~--~~~l~~~~ 340 (479)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+.... +..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 221 1 22334455666778899999999998876431 1122111 11122222
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCC-ChhhH-----HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc---hHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVT-DPGTY-----GIVIRTLGKGKKTDEALIHLHHAIEMGHIPR---TITFNNV 411 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 411 (479)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 623 -----~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 623 -----LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred -----HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 26699999999988775421110 11111 1122445568899999998876543211111 1113456
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEH----AKIP-SRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
..++...|++++|...+++.... +... ...+...+..++.+.|+.++|...+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67788999999999999988753 2121 22456677788999999999999999998753
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-06 Score=71.42 Aligned_cols=389 Identities=14% Similarity=0.081 Sum_probs=224.7
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI-MIRCYCNKNDFF 137 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 137 (479)
..++..+..+|++++..-.++... +......|..+|-...++..|-..|+++... .|...-|.. -...+-+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 345778889999999888777654 7778888999999999999999999998865 565555543 345667788899
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVN--SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
.|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-|..
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 999998888642 22222111122 2335678888888888877543 444555555556788999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-------------CCHh---------------hHHHHH
Q 011714 216 VKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT-------------PNVV---------------TFNTLF 267 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------------~~~~l~ 267 (479)
..+-+---....|+..+ +..+.|+++.|+++..+++++|++ ||+. .+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 87754333455666544 556778899999999998887654 1211 122223
Q ss_pred HHHHhcCChhhHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccch
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKR-NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWE 346 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (479)
..+.+.|+++.|.+-+-.|..+ ....|+.|...+.-. -..+++....+-+.-++....-| ..|+..++-.|+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP-~ETFANlLllyC----- 321 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP-PETFANLLLLYC----- 321 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC-hHHHHHHHHHHh-----
Confidence 3445677777777777777433 223456666555432 22344555555555555554443 355555555565
Q ss_pred hhccHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHH---
Q 011714 347 EKDLLEDAYQVFEKMTKKVS-VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKID--- 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--- 422 (479)
+..-++.|-+++.+-..... ..+...|+.+=......-..++|++-++.+... ..-.......-++--...++-.
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44666666666643222111 012233333322223344566666655544322 0000011111111111122211
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+++-+++..+.. ..+...-...|.+..++..+.++|....+.
T Consensus 401 ~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 401 KAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1222222222221 112233344566777888888888877653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-06 Score=74.84 Aligned_cols=372 Identities=15% Similarity=0.096 Sum_probs=220.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 011714 57 FVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 57 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (479)
.-...+.+++++|++=-..-.+.++.+ +..|+....++.-.|++++|+..|.+-.+.. +.|...++.+..++......
T Consensus 43 saa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~ 120 (539)
T KOG0548|consen 43 SAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAA 120 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHh
Confidence 334456677777776665555554443 5779999999999999999999999988875 66777888888887211000
Q ss_pred h---hHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHH-----hhC-------CCCC
Q 011714 137 F---EARKVIDCMFDN---GYHPNVTTFTILVNSLCKS----------GRLKEALEVLDQM-----GRI-------GCKP 188 (479)
Q Consensus 137 ~---~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~-----~~~-------~~~~ 188 (479)
. .--.++..+... ........|..++..+-+. .++..+.-.+... ... +..|
T Consensus 121 ~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p 200 (539)
T KOG0548|consen 121 DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEP 200 (539)
T ss_pred hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCc
Confidence 0 000111111100 0000111222222222110 0111111111100 000 0111
Q ss_pred ----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 189 ----------------------NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 189 ----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
-..-...+..+..+..+++.|++.+....... .+..-++....+|...|.+.++..
T Consensus 201 ~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~ 278 (539)
T KOG0548|consen 201 CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIE 278 (539)
T ss_pred ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhc
Confidence 01124457777788888999999999888764 356666777788899998888888
Q ss_pred HHHHHHHCCCCCCHhhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 011714 247 LLNEAIERGVTPNVVTFNTL-------FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (479)
.-+...+.|.. ...-|+.+ ..+|.+.++++.++..|.+.......|+. ..+....+++.....
T Consensus 279 ~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 279 LCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAE 348 (539)
T ss_pred chHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHH
Confidence 87777766543 23333333 33566677888999999887665444332 222233344444443
Q ss_pred HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 320 EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
...-.+...-......-...+ ..|++..|...|.+++..++. |...|.....+|.+.|.+..|++-.+...+.
T Consensus 349 ~~a~~~pe~A~e~r~kGne~F------k~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 349 RKAYINPEKAEEEREKGNEAF------KKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhhChhHHHHHHHHHHHHH------hccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 332222111111112222222 569999999999999988765 8889999999999999999999988887775
Q ss_pred CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 400 GHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 400 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
. ++....|..=..++....+++.|++.|++..+.+ +.+......+.++..
T Consensus 422 ~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 422 D-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 2 2234455555666777788999999999998876 223333334444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-06 Score=69.37 Aligned_cols=301 Identities=16% Similarity=0.086 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF-TIL 161 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 161 (479)
.++.-.--+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|+.-+...++. +||-..- .--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345555667788888999999999999888642 223334444556788889988888888888875 5664332 223
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHH----H------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQ----T------------YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV 225 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 225 (479)
...+.+.|.+++|..=|+...+.. |+.. . ....+..+...|+...|+.....+++.. +.|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 456778999999999999988763 3211 1 1223445566788888888888887764 3477
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhH----HHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS----YSTL 301 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l 301 (479)
..|..-..+|...|++..|+.-+...-+... .+..++..+-..+...|+.+.++...++..+.+ ||... |..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 7788888888888888888887777666533 356666667777778888888888888777653 33321 1111
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH---HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC
Q 011714 302 ---------LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMN---SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD 369 (479)
Q Consensus 302 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 369 (479)
+......++|.++.+-.+..++.........++ .+..++ ...+++.+|+....++....+. |
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~-----~~d~~~~eAiqqC~evL~~d~~-d 340 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY-----REDEQFGEAIQQCKEVLDIDPD-D 340 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc-----cccCCHHHHHHHHHHHHhcCch-H
Confidence 111223344444444444444432221111111 111111 2345555555555555443322 3
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
..++..-..+|.-...++.|+.-|+.+.+
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-07 Score=75.03 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=215.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI-LVNSL 165 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 165 (479)
-+.+.+..+.+..++..|++++..-.+.. +.+......+..+|-...++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46778888889999999999999887764 447888899999999999999999999999875 455555543 24556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL--KGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
.+.+.+.+|+++...|... |+...-..-+ ......+++..+..++++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6789999999999988753 2222211122 22345788888888888876543 34444444444568999999
Q ss_pred HHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-------------CCHh--------HHHHH
Q 011714 244 AMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-------------PDKI--------SYSTL 301 (479)
Q Consensus 244 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l 301 (479)
|.+-|+...+- |.. ....|+.-+ +..+.|+++.|++...++.++|++ ||+. .-+.+
T Consensus 163 AvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999875 454 455666555 555788999999999999887643 1211 12223
Q ss_pred HH-------HHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhH
Q 011714 302 LN-------GLLKWGKIRPAVSIFKEMVRF-GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY 373 (479)
Q Consensus 302 ~~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (479)
+. .+.+.|+++.|.+-+..|..+ ....|+.|...+.-.- -.+++.+..+-+.-+...++. ...++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n------~~~~p~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN------MDARPTEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc------ccCCccccHHHHHHHHhcCCC-ChHHH
Confidence 33 345778888898888887632 2334555554443222 224555555556656666665 46889
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALC-GEGKIDKALLLLFLM 431 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 431 (479)
..++-.||++.-++-|-+++-+-...... .+...|+ ++.++. ..-..++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998887642211111 1222233 333333 234566665555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-05 Score=78.28 Aligned_cols=337 Identities=14% Similarity=0.148 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHH
Q 011714 69 RIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVID 144 (479)
Q Consensus 69 a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 144 (479)
..++.++....+.+ .|++.-.....++...+-..+-+++++++.-.. +.-+...-+.|+-...+. +.....+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 44566666654433 466777788888988999999999999887432 233344455555555544 4455666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011714 145 CMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD 224 (479)
Q Consensus 145 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 224 (479)
++-.-+ .|+ +...+...+-+++|..+|++.. .+..+.+.|+. ..+..+.|.++-++.. .
T Consensus 1045 rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~ 1103 (1666)
T KOG0985|consen 1045 RLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------E 1103 (1666)
T ss_pred HhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------C
Confidence 665432 122 3445566777888888887753 35555555554 3456666666655443 4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNG 304 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (479)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-++++....++.-.|.. =..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 567888888888888888888776433 26777888888888888888888888777766544443 3467778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
|++.++..+..+++ .-|+......+-..+. +.+.++.|.-+|..+. .|..+...+...|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf-----~~~~y~aAkl~y~~vS---------N~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCF-----EEKMYEAAKLLYSNVS---------NFAKLASTLVYLG 1234 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHh-----hhhhhHHHHHHHHHhh---------hHHHHHHHHHHHH
Confidence 88888876655543 2456565666666554 5577777777776443 3777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
++..|.+.-+++ .+..+|..+-.+|...+.+.-| +|-..++.....-...|+.-|...|.+++-+.+++
T Consensus 1235 eyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1235 EYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 888887766653 2456777777777766654332 23333334455566677777777777777777666
Q ss_pred HHH
Q 011714 465 AAL 467 (479)
Q Consensus 465 ~~~ 467 (479)
..+
T Consensus 1304 a~L 1306 (1666)
T KOG0985|consen 1304 AGL 1306 (1666)
T ss_pred hhh
Confidence 543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-07 Score=85.49 Aligned_cols=225 Identities=16% Similarity=0.114 Sum_probs=128.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
+..-...++.|.+.+|.-.|+...+.++. ++..|-.|...-..+++-..|+..+.++.+.. +.|......|...|...
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhh
Confidence 34445566677777777777776666554 66777777777777777777777777777654 45566666677777777
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCChHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhc
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILV---------NSLCKSGRLKEALEVLDQMG-RIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 203 (479)
|.-..|.+.++..+...++ ..|...- ..+..........++|-++. ..+..+|..+...|.-.|--.
T Consensus 367 g~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 7777777777766543211 0000000 01111112233344444433 233335555666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChhhHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN-VVTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
|++++|+..|+..+...+. |..+||-|...++...+.++|+..|.++++. .|+ +.+...|.-.|...|.+++|.+.
T Consensus 444 ~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 6666666666666654322 5566666666666666666666666666664 222 23444555566666666666665
Q ss_pred HHHH
Q 011714 283 LKLM 286 (479)
Q Consensus 283 ~~~~ 286 (479)
|-..
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 5443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-06 Score=70.04 Aligned_cols=305 Identities=14% Similarity=0.128 Sum_probs=171.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI---LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN- 194 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 194 (479)
++.-..-+...+...|++..|+.-|-..++. |+..|.+ -...|...|+-..|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444556677777788888888888777653 3333433 345677778888888888887775 56643321
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--VYTY------------TAVMDGFCKVGRSNEAMELLNEAIERGVTPNV 260 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 260 (479)
--...+.+.|.++.|..-|+.+++....-. ...+ ...+..+...|+...|+.....+++.. +.+.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 223456788888888888888887632111 1111 222334455677777777777777763 3366
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGL 340 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (479)
..|..-..+|...|.+..|+.-++...+..-. +..++--+-..+...|+.+.+....++-++. .||..........+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 67777777777778777777766666554322 4455555666677777777777777776653 44443222211111
Q ss_pred hc--------ccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHH
Q 011714 341 CM--------KSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITF 408 (479)
Q Consensus 341 ~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 408 (479)
-+ ....+.+++.++....+...+..+.... ..+..+-.++...|++.+|++...++++. .|+ ..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHH
Confidence 00 0001233444444444444443332111 12333334444555555555555555542 232 4444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 409 NNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.--..+|.-...++.|+.-|+...+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 444555555555555555555555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-08 Score=85.56 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=162.7
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
...-.|....++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444577777765554 333332334555667788888899877544 4444333 6666666666655554455566
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 139 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+..-+++........ +.........++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555554433332 3333333345566789999999888653 366777788899999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 218 NDGLKPDVYTYTAVMDGFC----KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 218 ~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
+.+ .|. +...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+..
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 753 343 3333444433 344689999999998665 4568888899999999999999999999998776533
Q ss_pred CHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHc
Q 011714 294 DKISYSTLLNGLLKWGKI-RPAVSIFKEMVRF 324 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 324 (479)
+..+...++-+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 667777888888888887 6677788887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-05 Score=71.29 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
..-+=+..+...+++++|++...++...+ +.+...+..-+.+.++.+++++|+.+.+.-... ..+...+--=..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444566677899999999999999876 667788888888999999999999665543211 111111111233445
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
+.+..++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 7899999999998333 2344477777788999999999999999997764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-06 Score=85.72 Aligned_cols=337 Identities=12% Similarity=0.001 Sum_probs=212.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC------CCC--HHHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY------HPN--VTTFTILVNSL 165 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~ 165 (479)
.+...|++..+..+++.+.......+..........+...|+++++...++.....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4445677777777766553211112222334445566778999999999988754210 111 12223334556
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KPDVYTYTAVMDGFC 236 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 236 (479)
...|++++|...+++....-...+ ..+.+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 679999999999998765311112 134456667778899999999999887643 11 111234556677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCC--CHhHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIER----GVT--P-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR--NCLP--DKISYSTLLNGL 305 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 305 (479)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999999887652 211 1 2233455666777889999999998887543 1112 233455566678
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCcCHHH---HH-HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHH
Q 011714 306 LKWGKIRPAVSIFKEMVRFG--FEVDERM---MN-SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIV 376 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~---~~-~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 376 (479)
...|+.+.|.+.+....... ....... .. .....+ ...|+.+.|...+............ ..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW-----QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH-----HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 88999999999998875421 1111110 00 011112 1457888888887765542211111 113567
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEM----GHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++...|++++|...++++... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999987754 22221 2456667778899999999999999998764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=87.47 Aligned_cols=253 Identities=15% Similarity=0.138 Sum_probs=147.0
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666665554 222211223344455667777777766443 3333322 555555555554444334444454
Q ss_pred HHHHHHHHCCCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 246 ELLNEAIERGVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.-+++....... .+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444443332222 12222233334556678888887776532 25666677778888888888888888888753
Q ss_pred CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc
Q 011714 325 GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR 404 (479)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 404 (479)
..| .+...+..++.... ...+.+.+|..+|+++... ..+++.+.+.+..++...|++++|.+++.+....+. -+
T Consensus 161 --~eD-~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~ 234 (290)
T PF04733_consen 161 --DED-SILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-ND 234 (290)
T ss_dssp --SCC-HHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CH
T ss_pred --CCc-HHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CC
Confidence 333 44444555554321 1124578888888888765 345778888888889999999999999888776543 35
Q ss_pred hHHHHHHHHHHHcCCCH-HHHHHHHHHHHhCC
Q 011714 405 TITFNNVIQALCGEGKI-DKALLLLFLMYEHA 435 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~ 435 (479)
+.+...++.+....|+. +.+.+++.++....
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 66777778777777887 66777888877653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-07 Score=82.48 Aligned_cols=231 Identities=12% Similarity=0.048 Sum_probs=162.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
-+.+.|++.+|.-.|+..++..+. +...|..|......+++-..|+..+++..+.... +....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 346788888888888888877543 6778888888888888888888888888887533 67777788888888888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHh--cccchhhccHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHhcCCCHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLC--MKSWEEKDLLEDAYQVFEKMT-KKVSVTDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
|...++.-++..++- ......-...-. ...+.....+....++|-.+. ..+..+|+.+...|.-.|--.|++++|+
T Consensus 372 Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 888888766532110 000000000000 000012233444555555444 3443468888888999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.|+.++.... -|..+||.|...++...+.++|+..|.++++.. +-=+.+...|+-.|...|.+++|.+.|-.++..
T Consensus 451 Dcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99998887532 267789999999999899999999999998874 223456667777888999999999888887764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.7e-06 Score=74.85 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--HHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL--KEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a 174 (479)
.++.++|+.+++++++.. +-+..+|+....++...| ++++++..++.+.+.. +.+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 344445555555554432 222333443333333444 3455555555555443 22334444333333333331 445
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CC----HHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV---GR----SNEAMEL 247 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~ 247 (479)
+++++++.+.. +-+..+|+...-++...|+++++++.++++.+.++. +...|+.....+.+. |. .++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55555555443 335555555555555556666666666666555433 444444444333332 11 2345555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKE----GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 307 (479)
..+++...+. |...|+-+...+... +...+|.+.+.+....++ .+......|+..|+.
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 5555554332 556666666666552 233456666666554332 245556666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-05 Score=71.31 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=155.5
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN-EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF--FEA 139 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 139 (479)
.+..++|+.+.+.+.+.++. +..+|+.--..+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 45679999999999887655 6778887777777777 6899999999999875 56666787666666666653 678
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---GRV----EEAYEM 212 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a~~~ 212 (479)
..+++.+.+.. +-|..+|+...-++...|+++++++.++++++.+ +.+..+|+.....+.+. |.. ++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 89998998775 4588899999888999999999999999999886 45777888777666554 222 467777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 213 LMNVKNDGLKPDVYTYTAVMDGFCKV----GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
..+.....+ -+...|+.+...+... +...+|.+.+.+..+.++. +......|+..|+..
T Consensus 206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhh
Confidence 777776543 3778888888777773 3456788888887765433 667778888888753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.0001 Score=67.24 Aligned_cols=383 Identities=11% Similarity=0.110 Sum_probs=179.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
|..+|+.||+-+..+ .++++.+.++++...- +-....|..-|..-...++++..+.+|.+.+.. ..+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence 777777777776555 7777788887777542 445667777777777777888888887777654 235566665554
Q ss_pred HHHh-cCChHH----HHHHHHHH-hhCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC----
Q 011714 164 SLCK-SGRLKE----ALEVLDQM-GRIGCKP-NIQTYNCLLKG---------LCYVGRVEEAYEMLMNVKNDGLKP---- 223 (479)
Q Consensus 164 ~~~~-~g~~~~----a~~~~~~~-~~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~---- 223 (479)
---+ .|+... ..+.|+-. .+.|+.+ +-..|+..+.. |..+.+.+...++|.++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 222222 22223222 2333222 22334444332 223334555666666665431110
Q ss_pred --CHHHHHHHHHHH-------HccCCHHHHHHHHHHHHH--CCCCCCHh---------------hHHHHHHHHHhcCCh-
Q 011714 224 --DVYTYTAVMDGF-------CKVGRSNEAMELLNEAIE--RGVTPNVV---------------TFNTLFNGYCKEGTP- 276 (479)
Q Consensus 224 --~~~~~~~li~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g~~- 276 (479)
|-.+|..-|+.. -+...+..|.++++++.. .|...... .|-.+|.--..++--
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 111221111111 123345566666666543 23221111 133333322211111
Q ss_pred -------hhHHHHHHHH-HhCCCCCCHhH-HHH----HHHHHHhcCCh-------HHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 277 -------MKGVGLLKLM-KKRNCLPDKIS-YST----LLNGLLKWGKI-------RPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 277 -------~~a~~~~~~~-~~~~~~~~~~~-~~~----l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
....-.+++. .-.+..|+... +.. .-+.+...|+. +++..+++..+..-..-+..++..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222 11233332211 111 11123333333 3344444443322111111122111
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQAL 415 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 415 (479)
.. +-... .+....+....+++++...-..--..+|..++..-.+..-.+.|..+|.++.+.+..+ +..++.+++.-+
T Consensus 335 a~-~eE~~-~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 335 AD-YEESR-YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred Hh-hHHHh-cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 11 10000 0111234444455544432221122456666666666667777777777777665555 455556666555
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 416 CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
|. ++.+-|.++|+.-.+.. ..++..-...+.-+...++-..|..+|++.+..++.||
T Consensus 413 cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 53 66677777777655543 23344444555666666777777777777776655544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-06 Score=79.47 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..-..+...+...|-...|+.+|++.. .|..++.+|+..|+.++|..+..+..+. +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556778888899999999998765 5778889999999999999998888874 78999999999988
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
....-+++|.++.+..-.. +-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+.-+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777889999988775432 22233333445789999999998877654 236778888888888999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 246 ELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+.|.......+ .+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.++.|.+.+.++....
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99988877532 366789999999999999999999999998887 3466677777778889999999999998876421
Q ss_pred -CCcCHHHHHHHHHHHh
Q 011714 326 -FEVDERMMNSLLRGLC 341 (479)
Q Consensus 326 -~~~~~~~~~~l~~~~~ 341 (479)
...|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 1114444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-05 Score=81.23 Aligned_cols=233 Identities=11% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhh
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-GLKP---DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVT 262 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (479)
+-+...|-..|......++.++|.++.++.+.. ++.- -...|.++++.-...|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445667888888888888888888888887653 1111 13456677777777777788888998887752 2 3456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHh
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV-DERMMNSLLRGLC 341 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 341 (479)
|..|...|.+.+..++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.++++.-..- ...........-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888889999999999999999999776 22456788888888888888889999998887652221 1122222222222
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHcCC
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT--ITFNNVIQALCGEG 419 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 419 (479)
+.|+.+.++.+|+......+. ....|+.+++.-.++|+.+.+..+|+++...++.|.. ..|...+..=-..|
T Consensus 1612 -----k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1612 -----KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred -----hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 568888888888888776655 4567888888888888888888999888887776643 34555555555556
Q ss_pred CHHHHHHHH
Q 011714 420 KIDKALLLL 428 (479)
Q Consensus 420 ~~~~a~~~~ 428 (479)
+-+.+..+=
T Consensus 1686 de~~vE~VK 1694 (1710)
T KOG1070|consen 1686 DEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHH
Confidence 654444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=81.73 Aligned_cols=221 Identities=14% Similarity=0.072 Sum_probs=177.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
+|-...-..+...+...|-...|..++++.. .|..++.+|+..|+..+|..+..+..++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444445667788889999999999997753 4788899999999999999999888873 5788889888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.+......-+++|+++.+....+ .-..+-... -..++++++.+.|+.-.+.++. -..+|-....+..
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~-----~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~AL 530 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLI-----LSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAAL 530 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhcccc-----ccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHH
Confidence 88877777788898888775432 000000001 1458999999999987766544 5578888999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
+.++++.|.+.|...+.. .| +...||.+-.+|.+.|+..+|...+.+..+.+ ..+...|...+....+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 999999999999988774 44 46789999999999999999999999999887 557788888888899999999999
Q ss_pred HHHHHHHhC
Q 011714 461 ALYGAALKQ 469 (479)
Q Consensus 461 ~~~~~~~~~ 469 (479)
+.+.+++..
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 999998875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-06 Score=69.00 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+-..+...|+-+....+........ +.|.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3344444444444444444432211 2233333444555555555555555555554332 4455555555555555555
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
.++|..-|.+..+.. .-+...++.+...+.-.|+++.|..++......+.. |...-..+.......|++++|.++.
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555544432 223334444444555555555555555554443221 3444444444455555555555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0002 Score=70.20 Aligned_cols=219 Identities=17% Similarity=0.238 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 66 LKERIDIFDSIKKDG--TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+.+-+++++.+.-.+ ..-+...-|.|+-...+. +.....++.+++-... .|+ +...+...+-+++|..+|
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHH
Confidence 466777887775322 222333345555444443 3445555666555443 233 334555667777888887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+..- .+....+.|+. .-+..+.|.++-++.. .+..|..+..+-.+.|...+|++-|-+..
T Consensus 1072 kkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------ 1131 (1666)
T KOG0985|consen 1072 KKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------ 1131 (1666)
T ss_pred HHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------
Confidence 7653 35555566654 3456677776666543 34567777777777777777776663321
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
|+..|..+++...+.|.+++-.+++....+....|.+. +.||-+|++.++..+..+++ ..|+......+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 56667777777777777777777776665554444433 56777777777766655543 1245555555555
Q ss_pred HHHhcCChHHHHHHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~ 321 (479)
-|...|.++.|.-+|...
T Consensus 1203 rcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh
Confidence 566666666555555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-05 Score=73.37 Aligned_cols=329 Identities=17% Similarity=0.093 Sum_probs=194.4
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------CC
Q 011714 84 SVSDFNDLLM--ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN-G--------YH 152 (479)
Q Consensus 84 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 152 (479)
|..+-..++. .|...|+.+.|.+-.+-++ +...|..+..+|.+..+++-|.-.+-.|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555553 4566788898887776655 3468899999999888887776666555421 0 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 153 PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 153 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
++ ..=....-.....|.+++|..+|.+.+.. ..|=..|-..|.+++|+++-+.--+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 22122222345678899999999887743 3455667788999999888765433222 34555556
Q ss_pred HHHHccCCHHHHHHHHHHHH----------HCC---------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 011714 233 DGFCKVGRSNEAMELLNEAI----------ERG---------VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP 293 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 293 (479)
..+-..++.+.|++.|++.. ... ...|...|......+-..|+.+.|+.+|....+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 66666777777777776531 110 112444555555566667777777777765443
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhH
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTY 373 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 373 (479)
|-.+++..+-.|+.++|.++-++- -|......+.+.| +..|++.+|...|.+... +
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y-----En~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY-----ENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHH---------H
Confidence 445566667778888887776542 2444455556665 477888888888876643 2
Q ss_pred HHHHHHHhc---------------CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHH--------
Q 011714 374 GIVIRTLGK---------------GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFL-------- 430 (479)
Q Consensus 374 ~~l~~~~~~---------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-------- 430 (479)
...|+.|-. ..+.-.|-.+|++. |.. +...+..|-++|.+.+|+++.-+
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 222222222 12223333444321 111 22334456677777777654321
Q ss_pred HHhC--CCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 431 MYEH--AKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 431 ~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
++.. ....|+...+.-.+.++...++++|..++-.+.+
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1222 2234667777777777778888888777665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-06 Score=72.34 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH---H
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS---WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT---T 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 157 (479)
....+..+...+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++.+.+.... +.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHH
Confidence 45556666667777777777777777766542 2222 35566667777777777777777777654321 111 3
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 158 FTILVNSLCKS--------GRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 158 ~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
+..+..++... |+.++|.+.++++.... |+ ...+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44444444443 66777888888777653 33 222222211100 000 00 0011
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGV--TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
..+...+.+.|++++|...++.+.+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455667778888888888887776522 123456777788888888888888877777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00011 Score=70.33 Aligned_cols=225 Identities=18% Similarity=0.121 Sum_probs=142.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--------CCCHHhHHHHHHHHHhc
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-GL--------APNSWTFSIMIRCYCNK 133 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~ 133 (479)
.|+.+.|.+-...++ +...|..+.+.|.+.++.+-|.-.+..|... |. .|+ .+-..........
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 355555555554444 5678999999999999999887777666421 11 122 3333444455678
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 134 NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
|.+++|..+|++-.+. ..|=..|-..|.+++|+++-+.-....+ ..||.....-+...++.+.|+++|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999988753 3344567778999999998766443322 235555566666677788887777
Q ss_pred HHH----------HHCC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 214 MNV----------KNDG---------LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 214 ~~~----------~~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
++. +... -..|...|.-....+-..|+.+.|+.+|..+.+ |-.++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 643 2211 122445555556666678888888888877654 445555666666
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 275 TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+.++|-++-++- | |....-.+.+.|-+.|++.+|..+|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666654432 2 3444445556666666666666665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-05 Score=79.51 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP-----NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
...|-..|....+.++.++|+++.++.+.. +.+ -...|.++++.-...|.-+...++|++..+.. ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445555555566666666666666655532 111 12245555555555555566666666665532 1223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhc
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT-PNVVTFNTLFNGYCKE 273 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 273 (479)
.|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5666666666666666666666554 1234555666666666666666666666665553111 0122333344444556
Q ss_pred CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 274 GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 274 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
|+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666555542 1234556666666666666666666666666555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-06 Score=67.21 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
..+-..+...|+-+....+....... .+.|......++....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555566666666666666654432 23455566666777777777777777777766654 66677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777776665322 4455666666666777777777777666655332 5555566666666777777776665
Q ss_pred HHH
Q 011714 284 KLM 286 (479)
Q Consensus 284 ~~~ 286 (479)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-05 Score=73.92 Aligned_cols=389 Identities=11% Similarity=0.009 Sum_probs=224.7
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDC 145 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (479)
...|+..|-+..+.++. =...|..|...|....+...|.+.|+..-+.. ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45555555444444333 34567888888888778889999999888765 56677888888999999999999888333
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 146 MFDNGYHPN--VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 146 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
.-+.. +.- ...|....-.|.+.++..+|+.-|+...+.. +.|...|..+..+|.+.|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 32221 111 1223334445667888899999898888765 557889999999999999999999999888765 33
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH-------hC
Q 011714 224 DV-YTYTAVMDGFCKVGRSNEAMELLNEAIER------GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMK-------KR 289 (479)
Q Consensus 224 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~ 289 (479)
+. ..---..-.-+..|++++|...+...+.. +...-..++-.+...+.-.|-..++.+++++-+ ..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 22122233456788999999888877653 111122233333333333444444444443332 22
Q ss_pred CCCCCHhHHHHHHHHHHhcCChH--H----HHHHH-HHHHHcCCCcCHH---------------------HHHHHHHHH-
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIR--P----AVSIF-KEMVRFGFEVDER---------------------MMNSLLRGL- 340 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~-~~~~~~~~~~~~~---------------------~~~~l~~~~- 340 (479)
....+...|..+-.+|.-.-..+ . ...++ .+....+.-++.. .++..+..+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 11112222222222221100000 0 00011 1111111111111 111111111
Q ss_pred --hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 011714 341 --CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGE 418 (479)
Q Consensus 341 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 418 (479)
.... +...+...|...+.+..+.... +...|+.+.-+ ...|.+.-|...|-+..-.. +-...+|..+...|.+.
T Consensus 788 ~f~~l~-et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 788 YFLLLG-ETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHcC-CcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 1000 1122234677777766654333 56677776665 55577777777766555432 23566788888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 419 GKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 419 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
.+++.|...|...+... +.+...|-.........|+.-++..+|..
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999998888765 44556665555555667877777777766
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-05 Score=80.08 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTA 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 230 (479)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 345778889999999999999999999977765 3443 3444444466666665544433 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (479)
++.......++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+.. +-|....+.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333344444444444444444432 234466677777888888888888888887776 33677777777777777 7
Q ss_pred hHHHHHHHHHHHHc
Q 011714 311 IRPAVSIFKEMVRF 324 (479)
Q Consensus 311 ~~~a~~~~~~~~~~ 324 (479)
.++|.+++.+.+..
T Consensus 165 L~KA~~m~~KAV~~ 178 (906)
T PRK14720 165 KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00041 Score=67.31 Aligned_cols=234 Identities=13% Similarity=0.079 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMA--LVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
.+..+-+.+.+..++.++|+...+.+.+..+. . .|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-.
T Consensus 10 err~rpi~d~ld~~qfkkal~~~~kllkk~Pn--~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 10 ERRLRPIYDLLDSSQFKKALAKLGKLLKKHPN--A-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQN 85 (932)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCC--c-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHH
Confidence 45567788888899999999999888766433 2 23444444 456899999998888776655 337888899999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR--- 205 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 205 (479)
+|.+.++.++|..+|+..... -|+......+..+|.+.+.+.+-.+.--++.+. .+-+...+-++++.+...-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCc
Confidence 999999999999999999876 466777778888888887765544443333332 23344555555555443321
Q ss_pred -------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHH-HHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 206 -------VEEAYEMLMNVKNDG-LKPDVYTYTAVMDGFCKVGRSNEAMELL-NEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 206 -------~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++ ....+.-...+...-+.-+..+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 233556666666543 1112222223334456678888888888 3333333333444455667777788888
Q ss_pred hhHHHHHHHHHhCCC
Q 011714 277 MKGVGLLKLMKKRNC 291 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~ 291 (479)
.+..++..++...|.
T Consensus 243 ~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 243 QELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888877763
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-08 Score=54.83 Aligned_cols=29 Identities=41% Similarity=0.942 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
.||..+|+.||++|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33444444444444444444444443333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-05 Score=62.66 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----h
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC----K 272 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 272 (479)
...|++.|++++|++..+... +......=+.++.+..+.+-|.+.++.|.+.. +..+.+.|..++. .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344556666666666554411 22222222334445555566666666665531 3334443444333 2
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011714 273 EGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 273 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (479)
.+...+|.-+|++|-++ .+|+..+.+....++...|++++|..++++.+....
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34455666666666543 345556666666666666666666666666655443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-05 Score=66.94 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGF-CKVGR--SNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 244 (479)
.++.+++...+++..+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555443 445556666666666666666666666666554322 455555555542 44444 3666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
.+++++..+.... +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655333 4555566666666666666666666666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=71.63 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=96.1
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH-HcCCC--HHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL-CGEGK--IDKA 424 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a 424 (479)
.++.+++...++.....++. +...|..+...|...|++++|...++++..... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 35667777777777776665 778899999999999999999999998888643 2566777777764 56676 5899
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 425 LLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+++++..+.+ +.+...+..+...+.+.|++++|...|+++++..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999886 4477888888889999999999999999998864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=69.72 Aligned_cols=187 Identities=14% Similarity=0.025 Sum_probs=110.9
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC-HHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV---TTFTILVNSLCKSGRLKEALEVLDQMGRIGCK-PN-IQT 192 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~ 192 (479)
.....+..+...+...|++++|...++++.... +.+. ..+..+..++.+.|++++|...++++.+.... +. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345666777777778888888888888777653 2222 35666777777888888888888887765311 11 113
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 193 YNCLLKGLCYV--------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 193 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
+..+..++... |++++|.+.++.+...... +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44445555443 5566677777776654222 2222222111100 000 00 00112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLMKKRNC--LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+...|.+.|++.+|+..++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455667788888888888888776531 123456777888888888888888887777653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-05 Score=77.71 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=164.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++..++..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 3457789999999999999999999999877652 33344555555577777776555554 2 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
+.......++.-+..++..+... .-+...+..+..+|-+.|+.++|..+++++++.... |+.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 33333344443344444444443 224557888999999999999999999999998744 888999999999999 99
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHH
Q 011714 277 MKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQ 356 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 356 (479)
++|.+++.+.... +...+++..+.++|.++...... +...+..+.....
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~--------------- 214 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVL--------------- 214 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHH---------------
Confidence 9999998877654 66677899999999999875322 2222222322221
Q ss_pred HHHHHHhC-CCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 011714 357 VFEKMTKK-VSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALC 416 (479)
Q Consensus 357 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (479)
.. +..--..++-.+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 215 ------~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 ------GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ------hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11112234556666777888899999999988886433 4555666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-08 Score=54.28 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=17.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 115 GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-05 Score=63.36 Aligned_cols=251 Identities=13% Similarity=0.106 Sum_probs=155.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
-.|.+..++..-...... +.+...-..+-++|...|.+.....- +... -.|.......+......-++.++-..
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHH
Confidence 346666666655544432 12333444455666666665433322 2222 13344444444444444444444333
Q ss_pred -HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 247 -LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+.+.+.......+......-...|+..|++++|++..+... +......=+..+.+..+++.|...++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33444443333333333444557888899999988877521 3344444455667788889999999998863
Q ss_pred CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch
Q 011714 326 FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT 405 (479)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 405 (479)
.+..+++.+..++..... ..+.+.+|.-+|+++.++ ..|++.+.+.+..++...|++++|..+++.++..... ++
T Consensus 167 --ded~tLtQLA~awv~la~-ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLAT-GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred --chHHHHHHHHHHHHHHhc-cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 355677777777765432 335588999999999876 3458888999999999999999999999999887543 66
Q ss_pred HHHHHHHHHHHcCCCHHH-HHHHHHHHHhCC
Q 011714 406 ITFNNVIQALCGEGKIDK-ALLLLFLMYEHA 435 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 435 (479)
.+...++.+-...|...+ ..+.+.++....
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~ 272 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSH 272 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence 777777666666666544 456666666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-06 Score=66.96 Aligned_cols=109 Identities=8% Similarity=-0.093 Sum_probs=76.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.++++..+.+ +..+......+...|++++|...|+.+..... .+...|..+..++...|++++|+..|++..+..
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455544442 22344566777778888888888887776532 256677777777888888888888888887765
Q ss_pred CCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 436 KIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+.+...+..++.++...|++++|...|+.+++..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777777778888888888888888877743
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.5e-06 Score=65.32 Aligned_cols=95 Identities=11% Similarity=-0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666667777777777777766654 4466666777777777777777777777777653 3466666667777777
Q ss_pred cCChHHHHHHHHHHhhC
Q 011714 168 SGRLKEALEVLDQMGRI 184 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~ 184 (479)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-05 Score=73.83 Aligned_cols=183 Identities=8% Similarity=0.046 Sum_probs=141.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 116 LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
...+...+..|.....+.|+.++|..+++...+.. |-+......+..++.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 35668899999999999999999999999999864 4467778889999999999999999999999875 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
+..++...|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8899999999999999999999843 2358889999999999999999999999998762 234455555443 2
Q ss_pred hhhHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhc
Q 011714 276 PMKGVGLLKLMKKR----NCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 276 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 308 (479)
...-...++++.-. |...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 34445556655433 2333344455555555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-05 Score=72.30 Aligned_cols=394 Identities=13% Similarity=0.030 Sum_probs=214.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 65 PLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+...|...|+...+.+.. +...+..+...|++..+++.|..+.-...+.. ...-...|....-.|...++...|..-|
T Consensus 507 Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 446677777777766654 78889999999999999999999844433321 0111233444566788889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI-QTYNCLLKGLCYVGRVEEAYEMLMNVKNDG-- 220 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 220 (479)
+...+.. |.|...|..++.+|.++|++..|.++|.+.... .|+. ..--.....-+..|.+.+++..+.......
T Consensus 586 QsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 586 QSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999875 558899999999999999999999999988776 3433 222223334567788888888887765421
Q ss_pred ----CCCCHHHHHHHHHHHHccCCH-------HHHHHHHHHHHHCCCCCCHhhHHHHHHHH-------------------
Q 011714 221 ----LKPDVYTYTAVMDGFCKVGRS-------NEAMELLNEAIERGVTPNVVTFNTLFNGY------------------- 270 (479)
Q Consensus 221 ----~~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------------------- 270 (479)
..--..++-.+...+.-.|=. +++++.|.-........+...|..+-++|
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il 742 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIIL 742 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHH
Confidence 000111221111111112211 22222222222211111222222221111
Q ss_pred ----HhcCCh---h---hHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCcCHHH
Q 011714 271 ----CKEGTP---M---KGVGLLKLMKKRNCLPDKISYSTLLNGLLK----WG----KIRPAVSIFKEMVRFGFEVDERM 332 (479)
Q Consensus 271 ----~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~ 332 (479)
-..+.. + -+.+.+-.-. ....+..+|..+...|.+ .+ +...|...++..++. ..+...
T Consensus 743 ~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~ 818 (1238)
T KOG1127|consen 743 SKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEG 818 (1238)
T ss_pred HHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHH
Confidence 111111 0 0000000000 011123334444333322 11 123455555555432 112222
Q ss_pred HHHHHHHHhcc-----------------------------cchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 011714 333 MNSLLRGLCMK-----------------------------SWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG 383 (479)
Q Consensus 333 ~~~l~~~~~~~-----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (479)
+...+...... .+-+..+++.|...|.......+. |...|-.........
T Consensus 819 ~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eav 897 (1238)
T KOG1127|consen 819 LWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAV 897 (1238)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHH
Confidence 22222222100 012457778888888887776554 556676666666677
Q ss_pred CCHHHHHHHHHHHHH----cCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh---------CCCCCCHhhHHHHHHHH
Q 011714 384 KKTDEALIHLHHAIE----MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE---------HAKIPSRTSYDMLITKL 450 (479)
Q Consensus 384 g~~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~ 450 (479)
|+.-++..+|..--+ .|-.++..-|.+........|+.++-+.-.+++-. .+.+.+...|...+...
T Consensus 898 G~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstl 977 (1238)
T KOG1127|consen 898 GRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTL 977 (1238)
T ss_pred HHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHH
Confidence 777777777776221 13334444455555555666776655444433322 12244567777777777
Q ss_pred hccCCHhHHHHHHHHHH
Q 011714 451 DQLEKSYDACALYGAAL 467 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~ 467 (479)
.+.+.+.+|.++..+.+
T Consensus 978 EhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 978 EHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00018 Score=68.19 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=49.9
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhh
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEK 348 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 348 (479)
+......+.+|+.+++.++.... ...-|-.+...|...|+++.|.++|.+.- .++..+.+|. +.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~-----k~ 804 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYG-----KA 804 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHh-----cc
Confidence 33445555556665555554432 12334455555666666666655554321 1223334443 44
Q ss_pred ccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
|.+++|.++-.+.. ++......|-.-..-+-++|++.+|.+++
T Consensus 805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 55555555544332 12222333444444444555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00032 Score=66.49 Aligned_cols=108 Identities=17% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.+.....+|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+. ..++-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33445566777777777666542 23334566667777777777777777433 12445577777777777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
+|.++-.+.. |.......|-+-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 7777765542 33334455555555555556655555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00025 Score=58.48 Aligned_cols=188 Identities=18% Similarity=0.121 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHHHHHh---CC-CCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 98 LNEQETAVKFFSEASS---YG-LAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
..+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3455666666666542 23 445544 3455556666777778888887777654 2333333332233344567778
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+|.++++.+.+.+ +.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888777665 445566655555566666666777777766665 34477777777777777778877777777776
Q ss_pred HCCCCCCHhhHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEG---TPMKGVGLLKLMKKR 289 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 289 (479)
-..+ .+...+..+...+.-.| +..-+.++|.+..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6532 24444444554443333 445566666666664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.001 Score=60.97 Aligned_cols=373 Identities=13% Similarity=0.108 Sum_probs=212.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 011714 52 LQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC 131 (479)
Q Consensus 52 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (479)
.....++......+.++....++++...-+ -+...|..-|..-.+.++++....+|.+.... ..+...|...+..-.
T Consensus 21 ~sw~~lire~qt~~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 21 DSWSQLIREAQTQPIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVR 97 (656)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHH
Confidence 345566666777788999999999986543 37888999999999999999999999998865 455677777776443
Q ss_pred hc-CChhh----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCChHHHHHHHHHHhhCCCCCCHHHHH-
Q 011714 132 NK-NDFFE----ARKVIDCMF-DNGYHP-NVTTFTILVNS---------LCKSGRLKEALEVLDQMGRIGCKPNIQTYN- 194 (479)
Q Consensus 132 ~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~li~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 194 (479)
+. |+... ..+.|+-.. +.|..+ +-..|+..+.. +..+.+++...++|.++...-+.-=...|+
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~D 177 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKD 177 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 32 22222 223333333 333322 23345444433 334457777777777775431110011111
Q ss_pred -----HHHH-----H--HHhcCCHHHHHHHHHHHHHC--CCCCC---------------HHHHHHHHH------------
Q 011714 195 -----CLLK-----G--LCYVGRVEEAYEMLMNVKND--GLKPD---------------VYTYTAVMD------------ 233 (479)
Q Consensus 195 -----~l~~-----~--~~~~~~~~~a~~~~~~~~~~--~~~~~---------------~~~~~~li~------------ 233 (479)
.-|. - --+...+..|.++++++... |+... ...|..+|.
T Consensus 178 Y~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~ 257 (656)
T KOG1914|consen 178 YEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDG 257 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 0000 0 01122334444444443221 11100 001111111
Q ss_pred -------------------------------------HHHccCC-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011714 234 -------------------------------------GFCKVGR-------SNEAMELLNEAIERGVTPNVVTFNTLFNG 269 (479)
Q Consensus 234 -------------------------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (479)
.+...|+ .+++..+++..+..-..-+..+|..+.+.
T Consensus 258 ~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~ 337 (656)
T KOG1914|consen 258 TMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADY 337 (656)
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1112222 23444444444332111222333333221
Q ss_pred HHhc---CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHhcccc
Q 011714 270 YCKE---GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV-DERMMNSLLRGLCMKSW 345 (479)
Q Consensus 270 ~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 345 (479)
--.. ...+....+++++...-..--..+|..+++...+..-.+.|+.+|.++.+.+..+ +..+..+++..++
T Consensus 338 eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c---- 413 (656)
T KOG1914|consen 338 EESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC---- 413 (656)
T ss_pred HHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh----
Confidence 1111 1245555566665544222234466677777777777888888888888777666 6677777777775
Q ss_pred hhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDK 423 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 423 (479)
.++.+-|.++|+.-.++-.. ++.--...+..+...++-..+..+|++.+..++.|+ ..+|..++.-=..-|+.+.
T Consensus 414 --skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 --SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred --cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 37778888888865544222 445556677777788888888888888887755544 3678888887788888888
Q ss_pred HHHHHHHHHhC
Q 011714 424 ALLLLFLMYEH 434 (479)
Q Consensus 424 a~~~~~~~~~~ 434 (479)
++++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 88887776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-05 Score=74.57 Aligned_cols=184 Identities=13% Similarity=0.087 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 81 TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 81 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
...++..+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34468999999999999999999999999999874 4457788889999999999999999999999875 457888889
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 240 (479)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 9999999999999999999999853 4458899999999999999999999999998752 334455555442 3
Q ss_pred HHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcC
Q 011714 241 SNEAMELLNEAIER----GVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 241 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 274 (479)
...-..+++.+.-. |.+..+.....+|..|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 34445556555332 33344455666666665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00013 Score=60.13 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChH
Q 011714 238 VGRSNEAMELLNEAIER---G-VTPNVV-TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
..+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+...-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44667777777766542 3 333433 34455556666777777777777776652 212222111112234467777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+|.++++.+++.+ +.|..++..-+...- ..|..-+|++-+....+.-+ .|...|.-+...|...|++++|.-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilk-----a~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILK-----AQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHH-----HcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 7777777777654 223333333332221 33555566666666555433 3777777777777777777777777
Q ss_pred HHHHHHcCCCC-chHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC
Q 011714 393 LHHAIEMGHIP-RTITFNNVIQALCG---EGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 393 ~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 435 (479)
+++++-. .| ++..+..+...+.- ..+.+.+.+++.+..+..
T Consensus 177 lEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 177 LEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7777653 23 33444444444332 334556677777777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00021 Score=64.59 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=48.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAY 210 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 210 (479)
..|+.++|+..++.+.+. .|-|+..+......+.+.|+..+|.+.++++... .|+ ...+-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344444444444444433 1223344444444444444444444444444443 222 333334444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011714 211 EMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 246 (479)
.+++...... +-|...|..|..+|...|+..++..
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 4444444332 2244444444444444444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=61.18 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555556666666666666655543 3455555666666666666666666666655543 3345555555556
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666655554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=60.55 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=55.1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3444455555556666666666666655543 3355555556666666666666666666555443 3344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011714 200 LCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~ 219 (479)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-05 Score=61.18 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=89.3
Q ss_pred hhccHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTD--PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKID 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 422 (479)
..++...+...++.+....+... ....-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34778888888888887654421 23344466788899999999999999998653332 234556778889999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+|+..++..... ......+...+.+|.+.|++++|...|+.++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999774332 3455677888999999999999999998764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.5e-05 Score=66.78 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=59.8
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
.|.++.|+..++.+....+. |+..+......+.+.++.++|.+.+++++.. .|+ ......+..++.+.|++.+|++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 35555566555555554333 4455555555555666666666666655553 233 3344455555556666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALY 463 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (479)
+++...... +.++..|..|..+|..+|+..+|....
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555443 345555555555555555544444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0039 Score=60.88 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCY 130 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (479)
...+-.-+..++.|+.++|..+++.....+.. |..+...+-..|.+.++.++|..+|++..+. .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44455566778999999999999998876666 8899999999999999999999999999876 67788888888899
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCC-CCCCHHHHHHHHHH
Q 011714 131 CNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR----------LKEALEVLDQMGRIG-CKPNIQTYNCLLKG 199 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 199 (479)
.+.+.+.+-.++--++-+. .+-++..+-++++.....-. ..-|.+.++.+.+.+ ---+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9988887655554444442 34455555555555543211 223444555555432 11111122222333
Q ss_pred HHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 200 LCYVGRVEEAYEMLM-NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 455677777777773 33322222233333444555556666666666655555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=57.89 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChH
Q 011714 98 LNEQETAVKFFSEASSYGLAPN---SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN--VTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~ 172 (479)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++ ......|..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 12222233445555555555555555554431111 112233444555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
+|+..++..... ......+......+.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443222 12233344444555555555555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-05 Score=68.58 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=92.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..++++.|..+|+++.+..+ .....+++.+...++-.+|++++++.+... +.+...+..-...|.+.++++.|+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDP----EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred hcccHHHHHHHHHHHHhcCC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999988752 345667888888888899999999888652 3356666767777889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+.+++.+.. +.+..+|..|..+|.+.|++++|+-.++.+-
T Consensus 256 iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 256 IAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999875 4466789999999999999999998888654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=66.80 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=94.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
.....|+..+...++++.|..+++++.+.. |+ ....++..+...++-.+|++++++..+.. +.+...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344556666777788888888888888763 44 44457777777788888888888887653 44667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.+.++++.|+++.+++.... +-+..+|..|..+|...|+++.|+..+..+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888763 22566888888888888888888888877653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=46.53 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAP 118 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 118 (479)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777766665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=46.58 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPN 119 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 119 (479)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=9e-06 Score=45.53 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCK 187 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 187 (479)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=45.45 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=22.6
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666677777777777777777766666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=56.46 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777765331 2344455567777777777777777776 3222 1233444455677777777777777
Q ss_pred HHHHH
Q 011714 462 LYGAA 466 (479)
Q Consensus 462 ~~~~~ 466 (479)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.016 Score=55.12 Aligned_cols=226 Identities=12% Similarity=0.059 Sum_probs=146.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-------
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI------- 127 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~------- 127 (479)
+...+.+..-.+++|.+..+. .|.+..|..|.......-.++.|...|-+.... +.......|-
T Consensus 668 rD~~~Lve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~ 738 (1189)
T KOG2041|consen 668 RDVMNLVEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQ 738 (1189)
T ss_pred hhHHHHHHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHH
Confidence 334444556667777776654 578899999999998888899998888776543 2221111111
Q ss_pred ---HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhc
Q 011714 128 ---RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 128 ---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 203 (479)
..-+--|++++|+++|-++-+++ ..|..+.+.|++-.+.++++.-... .-..-..+|+.+...+...
T Consensus 739 q~aei~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 11223488999999998886553 2456777888888877776542111 0011235788888888989
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
..|++|.++|..... . ...+.++.+..++++-+.+...+.+ +....-.+.+++...|.-++|.+.+
T Consensus 810 ~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 999999998876532 1 2356777777777766665555432 4555667778888888888887766
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 284 KLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
-+. +.+ ...+..|...+++.+|.++-+..
T Consensus 876 Lr~---s~p------kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 876 LRR---SLP------KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred Hhc---cCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 432 211 23455677777777777765543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=52.45 Aligned_cols=96 Identities=23% Similarity=0.099 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ 452 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (479)
+..++..+...|++++|...++++.+... .+...+..+..++...|++++|.+.++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 55667778888999999999998877532 234667778888888899999999999888765 4455678888888999
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 011714 453 LEKSYDACALYGAALKQG 470 (479)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~ 470 (479)
.|++++|...++..++..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999998887643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=66.35 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=57.0
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+++++++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 33444444444444444455555544444432 1111222334555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555555555444444344444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=66.17 Aligned_cols=125 Identities=22% Similarity=0.220 Sum_probs=102.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVY 226 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 226 (479)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667778888888888888899999999988765 222233456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 227 TYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 227 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
+++.|++.+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988776666777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=55.26 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=52.9
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|..+|+.+...++. +...|-.|..++-..|++++|+..|..+....+ -|+..+-.+..++...|+.+.|++
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666666655444 455566666666666666666666666665542 245556666666666666666666
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|+..+..
T Consensus 125 aF~~Ai~~ 132 (157)
T PRK15363 125 ALKAVVRI 132 (157)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00048 Score=51.97 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PNVTTFTILV 162 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 162 (479)
++..+...+.+.|++++|...|+.+.+... +.....+..+..++.+.|+++.|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345555566666666666666666654321 001234455566666666666666666666543211 1134455555
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5566666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=64.20 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=92.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 425 (479)
+.+++++|+..|...+...+. |.+.|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 568899999999999988766 7888999999999999999999988888874 343 568999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHhccCCHh---HHHHHHHHHHhCCCCCCC
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLIT-KLDQLEKSY---DACALYGAALKQGVIPQR 475 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 475 (479)
+.|++.++.. |+-.+|-.=+. +=.+.+..+ .+..-++..-..|..|+.
T Consensus 170 ~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 170 EAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 9999988864 55555543333 333334333 444445554445555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=50.44 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
..+...+...|++++|+..++++.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555555566665555555432 2233444555555555555555555555555432 22334444555555555
Q ss_pred CChHHHHHHHHHHh
Q 011714 169 GRLKEALEVLDQMG 182 (479)
Q Consensus 169 g~~~~a~~~~~~~~ 182 (479)
|+.++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 55555555555444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00047 Score=52.03 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHI--PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--PSRTSYDMLIT 448 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 448 (479)
+...+..+...|++++|.+.+..+...... .....+..+..++.+.|+++.|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 445556666677777777777776653211 01234555666677777777777777776654311 12345666666
Q ss_pred HHhccCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
++.+.|++++|...++++++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6777777777777777776653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=49.97 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=17.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 011714 130 YCNKNDFFEARKVIDCMFDNGY-HPNVTTFTILVNSLC 166 (479)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 166 (479)
|...+++...-.+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3333444444444444444444 444444444444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=59.68 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEVDERM-MNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.-..+.+++.+|...|.+.++. .|...+ |.--..+|+ +.|.++.|++-.+.....++. ...+|..|..+|.
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~-----~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~ 160 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYS-----KLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHH-----HhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHH
Confidence 3467899999999999999985 555544 444555554 779999999999888877554 5578999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPRTITFNNVIQA 414 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 414 (479)
..|++++|++.|++.++ +.|+..+|..=+..
T Consensus 161 ~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred ccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999887 57777777655543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.011 Score=50.69 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH---HHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTF---SIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
....+...|++++|++.|+++...- +-+.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555432 1111111 23344555555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0008 Score=61.58 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..++.++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776654 4456666666677777777777777777776653 33556666666677777777
Q ss_pred HHHHHHHHHHhhC
Q 011714 172 KEALEVLDQMGRI 184 (479)
Q Consensus 172 ~~a~~~~~~~~~~ 184 (479)
++|+..|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776665
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00046 Score=49.38 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 95 LVMLNEQETAVKFFSEASSYGL-APNSWTFSIMIRCYCNKN--------DFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 95 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444445555544444 444555554444443321 1223444555555555555555555555444
Q ss_pred H
Q 011714 166 C 166 (479)
Q Consensus 166 ~ 166 (479)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00043 Score=63.31 Aligned_cols=87 Identities=15% Similarity=-0.020 Sum_probs=76.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|+++.|+..|++....++. +...|..+..+|...|++++|+..+++++.... .+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 669999999999999987665 678888999999999999999999999988632 256778888999999999999999
Q ss_pred HHHHHHhCC
Q 011714 427 LLFLMYEHA 435 (479)
Q Consensus 427 ~~~~~~~~~ 435 (479)
.|++.++..
T Consensus 92 ~~~~al~l~ 100 (356)
T PLN03088 92 ALEKGASLA 100 (356)
T ss_pred HHHHHHHhC
Confidence 999999875
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00097 Score=58.76 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
+|-.++...-+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554322 1122222222222 12233444455555555443 333445555555555
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNI---QTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555433 11111 244444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0016 Score=55.78 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=90.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG---EGKIDKALLLLFLMY 432 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 432 (479)
.-++.-...++. |...|-.|...|...|+++.|..-|++..+.. .+++..+..+..++.. .....++..+|+++.
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444455555 88999999999999999999999999998762 3466677777766553 334678999999999
Q ss_pred hCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 433 EHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
..+ +-++.+...|...+...|++.+|...|+.|++..-
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 886 66888999999999999999999999999998753
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0019 Score=61.88 Aligned_cols=62 Identities=18% Similarity=0.074 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
..|..+.......|++++|...++++.+. .|+...|..+..++...|+.++|...+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44444444444445555555555555543 234445555555555555555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0018 Score=57.39 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----CCH
Q 011714 227 TYTAVMDGFCKV-GRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-----PDK 295 (479)
Q Consensus 227 ~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 295 (479)
.+..+...|-.. |++++|++.|++..+. +.. .-..++..+...+.+.|++++|+++|+++...... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344555566666 7888888888776552 211 01234566677788888888888888887654221 122
Q ss_pred h-HHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCc--CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 296 I-SYSTLLNGLLKWGKIRPAVSIFKEMVRFG--FEV--DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 296 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
. .+...+-++...||...|...+++..... +.. .......++.++-.. ....++.+..-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~---D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG---DVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT----CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC---CHHHHHHHHHHHcccC
Confidence 1 22333445666788888888888776432 211 234445555555211 2333444444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0011 Score=53.74 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
..+..+...+...|++++|...++++.+....+. ...+..+..++.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4566667777777888888888877765432222 3466777777777788888888877777654 334556666666
Q ss_pred HHhccCC--------------HhHHHHHHHHHHh
Q 011714 449 KLDQLEK--------------SYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~--------------~~~A~~~~~~~~~ 468 (479)
++...|+ +++|.++++++++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6666655 4556666665554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.8e-05 Score=41.39 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
|+.++++|++.|++++|.+++++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=41.26 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYG 115 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 115 (479)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=50.08 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
......+...+...|++++|.++|+.+.... +-+..-|..|.-++-..|++.+|+..|......+ +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445556666666777777777777776654 4455566667777777777777777777776655 3466666667777
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 011714 165 LCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~ 183 (479)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.7e-05 Score=52.55 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=59.9
Q ss_pred hccHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 348 KDLLEDAYQVFEKMTKKVSV-TDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
.|+++.|+.+++++....+. ++...+-.+..++.+.|++++|+.++++ .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 47889999999999876553 2445566689999999999999999988 32222 133444455788999999999999
Q ss_pred HHHHH
Q 011714 427 LLFLM 431 (479)
Q Consensus 427 ~~~~~ 431 (479)
++++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 98763
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0061 Score=50.86 Aligned_cols=145 Identities=13% Similarity=0.033 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (479)
..+.++.++...|.+.-.+..+++..+...+.++.....+.+.-.+.||.+.|...|++..+..-..+..+.+.++..-.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777777888888888888888876666777888888888888888888888887765444444444444444333
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
...+..++++..|...++++...+.. ++...|.-.-+....|+..+|++.++.|+.. .|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 32334567888888888888776655 6666666666677778899999999888874 44444444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.025 Score=48.61 Aligned_cols=184 Identities=10% Similarity=0.014 Sum_probs=100.1
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 011714 48 NPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSD---FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFS 124 (479)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 124 (479)
.+....+..-...+..|+.++|+..|+.+....+.. ... .-.+..++.+.+++++|+..|++..+....-...-+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 344455566777788999999999999998765543 222 2456788899999999999999998763222222333
Q ss_pred HHHHHHHh--cC---------------C---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 125 IMIRCYCN--KN---------------D---FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 125 ~l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
..+.+.+. .+ + ...|...|+.+++. |=...-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH
Confidence 33333321 11 1 11222333333322 22222233333333333211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND--GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
. ..--..+.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 174 ---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 ---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred ---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0 001113445566666666666666666654 22223445555666666666666666655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0022 Score=47.82 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=42.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhc
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKI--PSRTSYDMLITKLDQ 452 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 452 (479)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|+.++++....... .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444455555555555555555544322 223444445555555555555555555543211 011222222334455
Q ss_pred cCCHhHHHHHHHHH
Q 011714 453 LEKSYDACALYGAA 466 (479)
Q Consensus 453 ~g~~~~A~~~~~~~ 466 (479)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0068 Score=58.17 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.+|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444333334444555555554444432 3444444444444445555555554444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=54.94 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=90.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH---HHHhc
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN--GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLL---RGLCM 342 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~ 342 (479)
.++.-.|+.++|.+.--...+.. ....+..+++ ++.-.++.+.+...|.+.++.+ |+........ ..+-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 35566788888877766666653 2223333443 3345677788888888877653 4333222211 11110
Q ss_pred c-----cchhhccHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHH---HHHH
Q 011714 343 K-----SWEEKDLLEDAYQVFEKMTKKVS---VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTIT---FNNV 411 (479)
Q Consensus 343 ~-----~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l 411 (479)
. ...+.|.+..|.+.|......++ .++...|.....+..+.|+..+|+.-.+.+... |+.- |..-
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~r 327 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRR 327 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHH
Confidence 0 01245777777777777665432 344455666666777777777777777766552 2221 2222
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++...++|++|.+-+++..+..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 235556677777777777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.004 Score=50.53 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888889999999999998876532222 4578888888889999999999998888753 3356667777
Q ss_pred HHHHHhcCChHHHHH
Q 011714 162 VNSLCKSGRLKEALE 176 (479)
Q Consensus 162 i~~~~~~g~~~~a~~ 176 (479)
..++...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0012 Score=53.33 Aligned_cols=97 Identities=20% Similarity=0.076 Sum_probs=73.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLI 447 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (479)
...|..++..+...|++++|+..++++......+ ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3557778888888999999999999988653222 23578888899999999999999999998764 33456666777
Q ss_pred HHHh-------ccCCHhHHHHHHHHHH
Q 011714 448 TKLD-------QLEKSYDACALYGAAL 467 (479)
Q Consensus 448 ~~~~-------~~g~~~~A~~~~~~~~ 467 (479)
..+. ..|++++|...+++++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 6766 7888886666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=57.76 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVK 217 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 217 (479)
+.+.|..+|+...+. .+.+...|...+..+.+.++.+.|..+|+...
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAI 97 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 333344444444432 12333444444444444444444444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
|..+...+...|++++|+..|++..
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al 62 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAM 62 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=47.32 Aligned_cols=63 Identities=19% Similarity=0.117 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC-CHhHHHHHHHHHHh
Q 011714 405 TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE-KSYDACALYGAALK 468 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 468 (479)
+.+|..+...+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 335556666666666666 56666666666655
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00099 Score=54.08 Aligned_cols=105 Identities=14% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 011714 82 NWSVSDFNDLLMALVML-----NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT 156 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (479)
..+..+|..+++.+.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 34667777777777653 4555555666666667777777777776666543 2211 111111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
. ---.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 113 -----~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -----M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0123456677777777777777777777777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0036 Score=55.41 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYST 300 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 300 (479)
..|......|...+++++|.+.|....+. +-.. -...|.....+|.+. ++++|+..++ .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------K 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------H
Confidence 44555566666666777776666665331 1000 011222222222222 4444444333 3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhh-ccHHHHHHHHHHHHhC---CCCC--ChhhHH
Q 011714 301 LLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEK-DLLEDAYQVFEKMTKK---VSVT--DPGTYG 374 (479)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~a~~~~~~~~~~---~~~~--~~~~~~ 374 (479)
.+..|...|++..|-..+..+-+ .+ ... |+++.|.+.|++.... ...+ -...+.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~y-----e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~ 159 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IY-----EEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL 159 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HH-----CCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HH-----HHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 33456666666666666555432 12 233 6777777777765431 1111 124567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----ch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIP-----RT-ITFNNVIQALCGEGKIDKALLLLFLMYEHAK----IPSRTSYD 444 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~ 444 (479)
.++..+.+.|++++|+++|+++....... +. ..+...+-++...||+..|.+.+++...... ........
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 78888999999999999999887653221 11 1233444466778999999999999886542 22345567
Q ss_pred HHHHHHhcc--CCHhHHHHHHHHH
Q 011714 445 MLITKLDQL--EKSYDACALYGAA 466 (479)
Q Consensus 445 ~l~~~~~~~--g~~~~A~~~~~~~ 466 (479)
.|+.++... ..+.+|+.-|+.+
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHccc
Confidence 777777543 4466666555544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=53.05 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=60.8
Q ss_pred CHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC
Q 011714 294 DKISYSTLLNGLLKW-----GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT 368 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 368 (479)
+..+|..+++.+.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK------g~fv-p~n~fQ~~F------ 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK------GKFV-PRNFFQAEF------ 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC------CCcc-cccHHHHHh------
Confidence 556666666665533 4444455555566666666666666666655521 1111 001111100
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ---------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ---------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 1123467789999999999999999999999999866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0074 Score=44.99 Aligned_cols=92 Identities=24% Similarity=0.203 Sum_probs=54.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PNVTTFTILVNSLC 166 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 166 (479)
+..++-..|+.++|+.+|++....|+... ...+-.+...+...|+.++|..++++....... .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44455566777777777777777664443 334555666677777777777777776654211 02222222334555
Q ss_pred hcCChHHHHHHHHHHh
Q 011714 167 KSGRLKEALEVLDQMG 182 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~ 182 (479)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.012 Score=49.08 Aligned_cols=132 Identities=9% Similarity=0.047 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-----H
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC-----L 196 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 196 (479)
..+.++.++.-.|.+.-...++.++++...+.++.....|++.-.+.|+.+.|...|++..+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33444455555555555555566555554444555555566655566666666666655443222222222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 254 (479)
...|.-.+++.+|...+.++...+. .|....|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233444555555555555554321 13333333333344455666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00052 Score=45.18 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=31.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+...|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666554 33555555666666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=50.81 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK---NDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++... ....++..+++++.+.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55555555555555555555555555555443 34444444444433322 12334555555555443 224444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
|...+...|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00053 Score=45.65 Aligned_cols=50 Identities=14% Similarity=0.366 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
.|++++|+++|+++.... +.+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444444444332 22344444444444444444444444444443
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.048 Score=43.21 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY-HPNVTTFTI 160 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 160 (479)
.|++..--.|..++...|+..+|...|++...--..-|....-.+.++....+++..|...++++.+... ..++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3455555556666666666666666666655433344555555555666666666666666666554320 012223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
+.+.+...|...+|...|+..... -|+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566666666666655543 3343333333334445555444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.046 Score=45.70 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
..+-.....+...|++.+|+..|+.+..... +--....-.++.++.+.|+++.|...++...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344445555566666666666666654321 111334445556666666666666666666544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.005 Score=53.31 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPSRTSYDML 446 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l 446 (479)
|...+..+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|+..|+.+.+... +.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445556666776666666654 2222 3455566666666777777777766665431 1123444445
Q ss_pred HHHHhccCCHhHHHHHHHHHHhC
Q 011714 447 ITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.++...|+.++|...|+..++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666667777777777666653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00097 Score=44.35 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=31.9
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666543 335566666666666666666666666666655
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.12 Score=46.44 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=154.0
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
.+..+..+|+..+....+..+. ++.-|.-=+..+...+++++|.--.+.-.+.. +..+..+...-.++...++..+|.
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHH
Confidence 4556678888888887776655 56666666677777788877766665544332 112223333444444444444444
Q ss_pred HHHHHH---------------HhCC-CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 141 KVIDCM---------------FDNG-YHPNVTTFTILV-NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 141 ~~~~~~---------------~~~~-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
+.++.- .... -+|.-..|..|- .++.-.|+.++|.+.--...+.. ..+....-.-..++.-.
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccc
Confidence 433321 1111 123334444332 34556788888888877777654 23333333333445567
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYT-------------AVMDGFCKVGRSNEAMELLNEAIER---GVTPNVVTFNTLF 267 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~ 267 (479)
++.+.+...|.+.+.. .|+...-. .-.+-..+.|++..|.+.|.+.+.. +..++...|-...
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7888888888887765 33433221 1123345788899999999888764 3445666677777
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 268 NGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+..+.|+.++|+.-.+...+.+.. -...|..-..++...++|++|.+-++...+.
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778889999988888777664210 1122333344566678888888888887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.058 Score=45.10 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLL 197 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 197 (479)
.+-.....+...|++.+|.+.|+.+..... +--....-.++.++.+.|++++|...+++..+.. |+. ..+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHH
Confidence 334445556678888888888888876421 2223455567777888888888888888877652 221 1222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 198 KGLCYVGRVEEAYEMLMNVKNDGLK---PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
.+.+......... ....... --...+..++.-|=...-..+|...+..+... -...--.+...|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 2221111111110 0000000 00122333344444444444554444444321 0111123456677788
Q ss_pred ChhhHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHH
Q 011714 275 TPMKGVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 275 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
.+..|..-++.+.+.= .+........++.++.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888777777651 111123456666777777776643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFD 148 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 148 (479)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666655543 334555555556666665 46666666555543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=22.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.+.+.|++++|+..|+++.+.. +-+...+..+..++...|++++|...|+.+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444332 2233344444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.075 Score=41.72 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN-----DGLKPDVYT 227 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 227 (479)
+...++..+...|++++|.++.+.+.... +-+...|..+|.+|...|+...|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666666666666666554 44566666666666666666666666666532 255665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.086 Score=41.82 Aligned_cols=127 Identities=16% Similarity=0.054 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTA 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 230 (479)
-|+...--.|.....+.|+..+|...|++....-..-|......+.++....+++..|...++++.+.... -+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555566666666666666666666554333445555566666666666666666666666554210 01223334
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
+.+.+...|++.+|+.-|+...+.- |+...-.-....+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHH
Confidence 5556666666666666666666542 23322222233344555444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=43.11 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.|.+.+++++|+++++.++..+.. +...+.....++...|++++|...++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555543211 3344444445555555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.22 Score=45.39 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 70 IDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
+++-+.+++ + +.|..+|..|++-+..++.+++..+++++|..-- +--..+|...+.+=...+++.....+|.+.+..
T Consensus 29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 455566654 3 4489999999999999999999999999998532 445668888888888889999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHh-hCCCCC-CHHHHHHHHHHH---HhcCCH------HHHHHH
Q 011714 150 GYHPNVTTFTILVNSLCKSGR------LKEALEVLDQMG-RIGCKP-NIQTYNCLLKGL---CYVGRV------EEAYEM 212 (479)
Q Consensus 150 ~~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---~~~~~~------~~a~~~ 212 (479)
. .+...|...++---+.+. -....+.|+-.. -.++.| +...|+..+..+ -..|.+ +...+.
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 467777777764444331 111223333322 234444 344566555443 233444 455666
Q ss_pred HHHHHHC
Q 011714 213 LMNVKND 219 (479)
Q Consensus 213 ~~~~~~~ 219 (479)
|.++...
T Consensus 184 Y~ral~t 190 (660)
T COG5107 184 YMRALQT 190 (660)
T ss_pred HHHHHcC
Confidence 6666653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.042 Score=42.97 Aligned_cols=86 Identities=15% Similarity=-0.065 Sum_probs=66.3
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 568888888888888776555 566778888888888888888888887765543 355556667778888888888888
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|+..++.
T Consensus 127 ~f~~a~~~ 134 (165)
T PRK15331 127 CFELVNER 134 (165)
T ss_pred HHHHHHhC
Confidence 88888774
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.01 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
.|..|-..|.-.|+++.|+...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~ 220 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKL 220 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHH
Confidence 344444455555666666655443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0015 Score=44.81 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCC-HhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 406 ITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IPS-RTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+++.+..+|...|++++|+..+++..+. +. .|+ ..++..+..++...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666655532 10 111 34455666666666666666666666554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.021 Score=49.56 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILVNSLCKSGRLKEALEVLDQMGRIG--CKPNIQTYNCLLK 198 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 198 (479)
|...+....+.|++++|...|+.+.+..... ....+-.+..+|...|++++|...|+.+.+.. -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444445566666666666666542110 02355556666666666666666666666431 1112344444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 011714 199 GLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~ 219 (479)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666677777776666654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.41 Score=46.19 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=35.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEM-GHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
.|..|.+-....|..+.|++.--.+.+. .+-|...+|..+.-+-+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445555556677888887654444322 355677778777666555555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.31 Score=44.24 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=99.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNG---YHPNVTTFTILVNSLCK---SGRLKEALEVLDQMGRIGCKPNIQTYN 194 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (479)
.+...++-+|....+++...++++.+.... +.-...+--...-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455566777888888888888887541 11122333334445555 788888888888855544567777777
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHH---H-HHHHCC--
Q 011714 195 CLLKGLCY---------VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR----SNEAMELL---N-EAIERG-- 255 (479)
Q Consensus 195 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~a~~~~---~-~~~~~~-- 255 (479)
.+.+.|-. ....++|+..|.+.-+. .|+...--.++..+...|. -.+..++- . .+.+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77766532 22367788888776554 2443332222222222332 11222222 1 122233
Q ss_pred -CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 256 -VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 256 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
...+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23455566788899999999999999999998763
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=45.52 Aligned_cols=91 Identities=9% Similarity=-0.092 Sum_probs=75.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (479)
..-+...|++++|..+|+-+.-.+.. +..-|..|..+|-..+++++|+..+......+ ..|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 44456789999999999988876543 56667888888888999999999999887765 34666677788999999999
Q ss_pred hHHHHHHHHHHhC
Q 011714 457 YDACALYGAALKQ 469 (479)
Q Consensus 457 ~~A~~~~~~~~~~ 469 (479)
..|+..|+.++++
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998873
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.32 Score=44.16 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIG---CKPNIQTYNCLLKGLCY---VGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
..+...++-.|-...+++..+++.+.+...- +.-+...-....-++.+ .|+.++|++++..+......++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344455566888999999999999998751 12223333345556667 89999999999997666667889999
Q ss_pred HHHHHHHHc---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh----HHHHH----HHHHhCC-
Q 011714 229 TAVMDGFCK---------VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK----GVGLL----KLMKKRN- 290 (479)
Q Consensus 229 ~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~----~~~~~~~- 290 (479)
..+.+.|-. ....++|+..|.+.-+. .|+..+=-.++..+.-.|+..+ ..++- ..+.++|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 988887743 22467788888776554 2444432233333333443222 22222 1122333
Q ss_pred --CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 291 --CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 291 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
-..+...+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2346677888899999999999999999999876
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0033 Score=43.12 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC-Cc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHI-PR-TITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.+|+.+..+|...|++++|++.+++..+. |.. |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56888999999999999999999988754 111 22 45788888999999999999999998765
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=45.13 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG-----RIGCKPNIQTY 193 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 193 (479)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 55666677777888888888888887664 5577788888888888888888888887764 34777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=51.26 Aligned_cols=265 Identities=17% Similarity=0.114 Sum_probs=162.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCC-CCHHhHHHHHHHH
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTN---WSVSDFNDLLMALVMLNEQETAVKFFSEAS--S--YGLA-PNSWTFSIMIRCY 130 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l~~~~ 130 (479)
+.++.|+...-+.+|+...+-|.. .=..+|..|..+|...+++++|+++...=. . .|-+ -...+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 456788888888999888776643 223557778888888999999998765411 1 1101 1122333444444
Q ss_pred HhcCChhhHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHh---
Q 011714 131 CNKNDFFEARKVIDCMF----DNGY-HPNVTTFTILVNSLCKSGR--------------------LKEALEVLDQMG--- 182 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~--- 182 (479)
--.|.+++|......-+ +.|- ......+..|...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655433221 1110 1123344556677765543 344555554322
Q ss_pred -hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH---
Q 011714 183 -RIGCK-PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN----DGLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAI--- 252 (479)
Q Consensus 183 -~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--- 252 (479)
+.|-. .--.+|..|...|.-.|+++.|+...+.-.. .|-. .....+..+.+++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 22200 1123566666677778899999887665332 2322 235677888899999999999999987653
Q ss_pred -HCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh----CC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 253 -ERG-VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK----RN-CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 253 -~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+.| ......+...|.+.|.-..++++|+.++.+-.. .+ ..-....+..|..++...|..++|..+...-++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222 223455667788888888889999988765432 11 112456788889999999999998877765543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=39.25 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
.+.+.++++.|+++++.+...+ +.+...+.....++.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555544443 33344444444444555555555555554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.64 Score=44.54 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=16.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 143 IDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344555554454433 22333444555555555543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.053 Score=40.90 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND-GLKPDVYTYTAVMD 233 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 233 (479)
.|+..+..+++.+|+..+++..|+++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444332 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.63 Score=42.65 Aligned_cols=398 Identities=16% Similarity=0.178 Sum_probs=205.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhC--CCCC------------C
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMA--LVMLNEQETAVKFFSEASSY--GLAP------------N 119 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~~~~~--~~~~------------~ 119 (479)
++++..-..+.+.....+..+.+... ...|-.+..+ +-+.+++..|++.+..-... +-.+ |
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 44444444555444444444433222 2223334333 34578888888887765443 2111 1
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC--------C-------hHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHPNVTTFTILVNSLCKSG--------R-------LKEALEVLDQ 180 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g--------~-------~~~a~~~~~~ 180 (479)
-..=+..+.+++..|++.+++.+++++... ....+..+|+.++-++.+.= . ++.+.-+.++
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 222255667888899999999988888643 33468888887665554421 1 2222223333
Q ss_pred HhhC------CCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHH
Q 011714 181 MGRI------GCKPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKNDGLKPDVYT-YTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 181 ~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
|... .+-|.......++....-.. +..--.++++.....-+.|+... ...++..+.+ +.+++..+-+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 3221 12333333344443332221 22223333333333344555332 2333333333 555555555444
Q ss_pred HHCCCC----CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH-------HHHHHHHh----cCChHHHHH
Q 011714 252 IERGVT----PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS-------TLLNGLLK----WGKIRPAVS 316 (479)
Q Consensus 252 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~ 316 (479)
....+. --..++..++....+.++...|-+.+.-+.... |+...-. .+-+..+. .-+...-..
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~ 363 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN 363 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence 332111 124567888888889999998888887776543 2221111 11111110 111222334
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH----HHh---cCCCHHH
Q 011714 317 IFKEMVRFGFEVDE-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR----TLG---KGKKTDE 388 (479)
Q Consensus 317 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~g~~~~ 388 (479)
+|.++...++ |. .....++.. ++..+...+.-+.|.++++.+.+-... |...-|.+.. +|. ....+.+
T Consensus 364 lwe~~qs~Di--DrqQLvh~L~~~-Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 364 LWEEIQSYDI--DRQQLVHYLVFG-AKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHhhcc--cHHHHHHHHHHH-HHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4555444322 32 222222222 122223334478888888887764332 4433333221 221 1233444
Q ss_pred HHHHHHHHHHcCCCCc----hHHHHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 389 ALIHLHHAIEMGHIPR----TITFNNVIQA--LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 389 A~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
-+++-+-+.+.|+.|- ...-|.|..| +...|++.++.-+-.-+.+ +.|++.+|..++-++....++++|.++
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444556676653 3344555443 4567899988877766665 367899999999888899999999988
Q ss_pred HHHH
Q 011714 463 YGAA 466 (479)
Q Consensus 463 ~~~~ 466 (479)
+..+
T Consensus 518 l~~L 521 (549)
T PF07079_consen 518 LQKL 521 (549)
T ss_pred HHhC
Confidence 8754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.47 Score=41.00 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 94 ALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 94 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3344556666666666555443 3334455555556666666666666665554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.058 Score=39.92 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=42.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHcCCCHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI---TFNNVIQALCGEGKIDK 423 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~ 423 (479)
+.|+++.|++.|.+....-+. ....||.-..++.-.|+.++|++-+.++++..-.-+.. .|..-...|...|+-+.
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred hccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 445555555555555544333 44455555555555555555555555555431111111 12222223444555555
Q ss_pred HHHHHHHHHhCC
Q 011714 424 ALLLLFLMYEHA 435 (479)
Q Consensus 424 a~~~~~~~~~~~ 435 (479)
|..=|+...+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 555555555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.81 Score=43.89 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh-------
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI------- 296 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------- 296 (479)
+..+...+...+.+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .|++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 4455555555566667777777777776432 34566777788888888777665442 22321
Q ss_pred ----HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 297 ----SYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 297 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
-|...-.+|.+.|+-.+|..+++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122333466677777777777776654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.67 Score=41.60 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGI 375 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (479)
.+.+..+.-+...|+...|..+-++.. .|+...+...+.+++ ..+++++-..+-.. ++ ++..|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa-----~~~~w~eL~~fa~s--kK----sPIGyep 242 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALA-----ENKDWDELEKFAKS--KK----SPIGYEP 242 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHH-----hcCCHHHHHHHHhC--CC----CCCChHH
Confidence 345555667778888888888766653 467788888888887 66888877665432 22 3467889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
.+.+|.+.|+..+|..+..+ +. +..-+..|.+.|++.+|.+...
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998888876 22 2445667788899888877643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.043 Score=49.16 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=90.5
Q ss_pred hhccHHHHHHHHHHHHhC----CCCCC----------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKK----VSVTD----------PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~----~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
+.|++..|..-|++.... ...++ ..+++.+..++.+.+++.+|++...+.++.+ ++|....-.=.
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG 298 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRG 298 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHH
Confidence 679999999999986642 11111 2356778888999999999999999988864 34666677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHh-HHHHHHHHHHhCC
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSY-DACALYGAALKQG 470 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~ 470 (479)
.+|...|+++.|+..|+++++.. +.|..+-..|+..-.+..... ...++|..|...-
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999875 445566666666555554444 4478899888763
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.7 Score=39.97 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=89.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE 207 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (479)
......|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566788888888888887654 33456667788888888888888888888765321122222223344455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChhh
Q 011714 208 EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER--GVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+++. |.. |...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCH
Confidence 555554444432 225666667777777888888887777666553 322 44455666666665554333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.34 Score=36.16 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=70.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhc
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGK 382 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 382 (479)
.-.|..++..++..+...+. +..-++.++.... ..-+-+...++++.+.+. -|. ...-.++.+|+.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNii-----Daa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNII-----DAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHH-----HH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecc-----hhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHH
Confidence 44577777778777776532 3344444444443 223334444444444332 121 112233333333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
.|. +.......+.+....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|...++.++
T Consensus 82 ~n~------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 82 RNK------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp TT---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcc------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 322 33344555666677777777777777776543 56777777778888888888888888
Q ss_pred HHHHHhCCC
Q 011714 463 YGAALKQGV 471 (479)
Q Consensus 463 ~~~~~~~~~ 471 (479)
+.++-++|+
T Consensus 143 l~~ACekG~ 151 (161)
T PF09205_consen 143 LKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhch
Confidence 888877775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.14 Score=38.64 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHh
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-RGVTPNVVTFNTLFNGYCK 272 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 272 (479)
...|+..+..+++.+|+..|++..|.++++...+ .+++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3557777777777777777777777777777654 3556566677777765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.2 Score=46.20 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.+...++.+..+|...|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999998876 4542 35899999999999999999999998874
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.034 Score=51.02 Aligned_cols=98 Identities=16% Similarity=0.071 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYD 444 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (479)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 5578999999999999999999999999885 4553 358999999999999999999999999863 22 232
Q ss_pred HHHH--HHhccCCHhHHHHHHHHHHhCCCC
Q 011714 445 MLIT--KLDQLEKSYDACALYGAALKQGVI 472 (479)
Q Consensus 445 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~~ 472 (479)
.+.. .+....+.++..++++.+.+-|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2221 222334556778888888877754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.09 Score=44.74 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHI--PRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPSRTSYDMLI 447 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 447 (479)
.|+.-+..+ +.|++.+|...|...++.... -....+-.|..++...|++++|..+|..+.+... +--+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 456688888888888765221 1233456677888888888888888888877542 22346677777
Q ss_pred HHHhccCCHhHHHHHHHHHHhC
Q 011714 448 TKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+..+.|+.++|+..|+..++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888888888888888774
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.97 Score=40.62 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=73.7
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|....|.++-.+. -.|+..-|-..+.+++..++|++-.++... .-++.-|...+.+|.+.|+..+|..
T Consensus 189 ~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 189 EMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 347777777765554 346888899999999999999988876542 2245779999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
++.++ + +..-+..|.+.|++.+|.+.
T Consensus 259 yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 259 YIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 98762 1 24556778888988888655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.56 Score=43.46 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHH-HcCCCcCHHHHHHHHHHHhcc-----cchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 311 IRPAVSIFKEMV-RFGFEVDERMMNSLLRGLCMK-----SWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 311 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
.+.|..+|.+.. .....|+-......+..+... .........+|.+.-++..+.+.. |+.....+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 455677777776 222444433322222221110 012345667788888888887766 8888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
+++.|..+|+++... .|| ..+|......+.-.|+.++|.+.+++..+... ..........++.|+..+ .++|+.+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 899999999998875 444 55666666777778999999999999877653 112233444455666654 6777777
Q ss_pred HHHH
Q 011714 463 YGAA 466 (479)
Q Consensus 463 ~~~~ 466 (479)
|-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.6 Score=42.73 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=70.4
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+
T Consensus 696 ~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 696 LIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 3477777777665554 3577778888889999999998887766432 25568888899999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
++-+.... . ..+.+|.+.|++.+|.++
T Consensus 766 Yiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 766 YIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 87654321 1 556778888888887654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.4 Score=45.84 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-------HHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER-------MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP 370 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 370 (479)
+..+++...=.||-+.+.+.+.+..+.+ ..... .|..++..++... ......+.|.+++..+...-+ +.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~-~~~~~~~~a~~lL~~~~~~yP--~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGID-GEDVPLEEAEELLEEMLKRYP--NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCc-ccCCCHHHHHHHHHHHHHhCC--Cc
Confidence 3444445555677777777766655422 11111 1222222222110 035678899999999988654 44
Q ss_pred hhHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC---CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011714 371 GTYG-IVIRTLGKGKKTDEALIHLHHAIEMGH---IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDML 446 (479)
Q Consensus 371 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (479)
..|. .-.+.+...|+.++|++.++++..... ......+.-+..++.-.++|++|...|..+.+.. .-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 4333 345777889999999999997664211 1233456667778888999999999999999875 3355566555
Q ss_pred HH-HHhccCCH-------hHHHHHHHHHHhC
Q 011714 447 IT-KLDQLEKS-------YDACALYGAALKQ 469 (479)
Q Consensus 447 ~~-~~~~~g~~-------~~A~~~~~~~~~~ 469 (479)
.. ++...|+. ++|.+++.++-..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 44 45567888 8888888877553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.9 Score=43.52 Aligned_cols=177 Identities=16% Similarity=0.070 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCChHHH
Q 011714 105 VKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVT------TFTILVNSLCK----SGRLKEA 174 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~a 174 (479)
.-+|.-+... +||. +..++....-.||-+.+++.+....+.+--..+. .|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555433 2333 4556666666788888888877766532111111 23333333333 4567888
Q ss_pred HHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNC-LLKGLCYVGRVEEAYEMLMNVKNDG--L-KPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.++++.+.+. -|+...|.. -.+.+...|++++|++.|+...... . ......+--+.-++.-.++|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 9999988876 466655543 3456677889999999998755321 1 11233444556677888899999999999
Q ss_pred HHHCCCCCCHhhHHHHH-HHHHhcCCh-------hhHHHHHHHHHh
Q 011714 251 AIERGVTPNVVTFNTLF-NGYCKEGTP-------MKGVGLLKLMKK 288 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~a~~~~~~~~~ 288 (479)
+.+..-- +...|.-+. .++...|+. ++|.+++.+...
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8875322 333443333 344566766 888888887744
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.81 Score=38.31 Aligned_cols=90 Identities=14% Similarity=-0.006 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHA---KIPSRTSYD 444 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 444 (479)
+....+.+.+..++++|-..+.+-... .-.++ ...|...|-.+....++..|.+.++.-...+ .+.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 444455566666666665544432111 11122 1234555556666677777777776643322 133556667
Q ss_pred HHHHHHhccCCHhHHHHHH
Q 011714 445 MLITKLDQLEKSYDACALY 463 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~ 463 (479)
.|+.+| ..|+.+++..++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 777766 455666655543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.1 Score=38.08 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCCcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHh
Q 011714 46 KENPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGT--NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-LAPNSWT 122 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 122 (479)
...|...-....+..+..|++.+|...|+.+....+ +....+.-.++.++-+.++++.|+..+++..+.- -.|| .-
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~d 108 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-AD 108 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hh
Confidence 455677777888888999999999999998886543 2345666677778888899999998888876543 2333 34
Q ss_pred HHHHHHHHH
Q 011714 123 FSIMIRCYC 131 (479)
Q Consensus 123 ~~~l~~~~~ 131 (479)
|...|.+++
T Consensus 109 Y~~YlkgLs 117 (254)
T COG4105 109 YAYYLKGLS 117 (254)
T ss_pred HHHHHHHHH
Confidence 544455444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.51 Score=44.48 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHH--HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFD--SIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIR 128 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 128 (479)
....-.+-..+-.++.+++..+.+ .+. . ..+....+.++..+-+.|-.+.|+++-. |.. .-..
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll-~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFe 326 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLL-P--NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFE 326 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTG-G--G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhc-c--cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhH
Confidence 344455556667777777666554 211 1 1124557888888888888888887743 221 2345
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (479)
...+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+... |..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 566778888888765432 3677888888888888888888888877652 4566667778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
..++.+.....|- ++....++...|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777766542 44555566667777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.73 Score=35.74 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555444 24444555555555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.44 Score=42.25 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=75.8
Q ss_pred hhccHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCch-----HHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKV-----SVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPRT-----ITFNNVI 412 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-----~~~~~l~ 412 (479)
..+.++++++.|+...+.. ......++..+...|.+..++++|+.+..++.+. ++..=. .....+.
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 4466777777777654311 1112256788888888889999888877766543 221101 1223344
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCC-CCCHh----hHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAK-IPSRT----SYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
-++...|...+|.+..++..+..+ .-|.. ....+.+.|...|+.+.|..-|+.+..
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 566778888888877777654321 11333 345567788888999998888887643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.7 Score=39.90 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVRFG-FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
..|...+....+..-.+.|..+|.+..+.+ +.++..++++++..++ .|+...|..+|+.-...-+. +...-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~------~~d~~ta~~ifelGl~~f~d-~~~y~~ 470 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA------TGDRATAYNIFELGLLKFPD-STLYKE 470 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh------cCCcchHHHHHHHHHHhCCC-chHHHH
Confidence 345556666666777788888888888877 5677788888888774 47888888888865544222 233345
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
-.+..+...++-+.|..+|+..++. +..+ ..+|..+|.--..-|+...+..+-++|.+.-
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 5666777788888888888866543 2223 4578888888888888888888877777653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.2 Score=44.22 Aligned_cols=175 Identities=18% Similarity=0.175 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL----LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG 234 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (479)
..-++.+.+...++-|+.+-+.-. .+..+...+ ..-+.+.|++++|...|-+.... +.|. .+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 334555556666666665544321 222222222 33345566777766666555432 1221 23444
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 011714 235 FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
|....+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44555555566666666666654 44455666667777776666665555443 2211 11234445555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 315 VSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
..+-..... +...+..++. ..+++++|.+.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ille--------~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILLE--------DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHHH--------HhcCHHHHHHHHhcC
Confidence 544433321 2333444443 236666666666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.54 Score=36.01 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
+..-.....+.|++++|++.|+.+..+- -+-...+.-.++.+|.+.+++++|...++..++..
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3333444445566666666666555431 01123344455555666666666666666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.34 Score=43.66 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
...+.+.|++..|...|+++...= . |.+.-+.++..... ..-..+++.|.-++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence 345677888888888888765420 0 00001111111111 11223445555666666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH-HHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSN-EAMELLN 249 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~-~a~~~~~ 249 (479)
.+|++.-++.+..+ ++|.....--..++...|+++.|...|+++.+. .|+ ...-+.++.+--+..+.. ...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666554 455666656666666666666666666666654 232 333333333333333332 2345555
Q ss_pred HHHH
Q 011714 250 EAIE 253 (479)
Q Consensus 250 ~~~~ 253 (479)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.83 Score=43.13 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
.....-.++++.+.++...-.-.. .-.....+.++..+-+.|-.+.|+++..+- . .-.....+.|++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 344556788888777665211100 112455778888888888888888865432 2 233455678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8888776543 3677888888888889999888888876642 455666777788887777777666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
...|- ++....++.-.|+.++.++++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65541 45556666677888887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.95 Score=35.71 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHH--H
Q 011714 50 RSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWS-VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFS--I 125 (479)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~--~ 125 (479)
.+..+..-++....+..++|+.-|..+.+.|..-- +-..-.......+.|+...|+..|+++-.....|-.. -.. .
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34555666666677888888888888887775421 1222334455667888888888888877553333221 111 1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 126 MIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
-...+...|.++......+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1223456677777777666665554444445556666666777777777777777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.45 E-value=1 Score=35.80 Aligned_cols=131 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH
Q 011714 280 VGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359 (479)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 359 (479)
.++++.+.+.+++|+...+..+++.+.+.|++.... .++..++-+|.......+-.+... ...-..-|.+++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~---~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQ---YPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHcc---ChHHHHHHHHHHH
Confidence 455666677788888888999999998888865444 344455555555554444333211 1122444555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 011714 360 KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLF 429 (479)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 429 (479)
++.. .+..++..+...|++-+|+++.+..... +......++.+..+.+|...=..+++
T Consensus 87 RL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 87 RLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred Hhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 5542 2667778888888888888888764222 11122344555555555444333333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.9 Score=38.91 Aligned_cols=281 Identities=14% Similarity=0.102 Sum_probs=147.4
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL--CKSGRLKEALEVLDQMGRIGCKPNIQ--TYNCLLKGLCYVGRVEE 208 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 208 (479)
.|+-..|.++-.+..+. +.-|....-.|+.+- .-.|+.+.|.+-|+.|... |... -...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555555443321 122333333333322 2356777777777777642 2211 12222233345566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHhh--HHHHHHHHH---hcCChhhHHHH
Q 011714 209 AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG-VTPNVVT--FNTLFNGYC---KEGTPMKGVGL 282 (479)
Q Consensus 209 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~a~~~ 282 (479)
|.++-+..-..-.. -...+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -..+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 66666665543211 24455666777777777777777776554421 2222211 112222111 11234444444
Q ss_pred HHHHHhCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 283 LKLMKKRNCLPDKI-SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+....|+. ....+.+ +.|+ .+.+-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY~~a-------r~gd--ta~dRlkRa 318 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLYVRA-------RSGD--TALDRLKRA 318 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHHHHh-------cCCC--cHHHHHHHH
Confidence 433333 334432 2233456778888888888888888876555543 2222222 2233 222222222
Q ss_pred H---hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH-cCCCHHHHHHHHHHHHhC
Q 011714 362 T---KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALC-GEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 362 ~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 434 (479)
. ...+. +.++...+..+-...|++..|..--+.... ..|....|..|...-. ..|+-.++...+-+..+.
T Consensus 319 ~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2 22111 456666777777788888888776666554 4677777777776544 458888888888887764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.67 Score=40.67 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN---GYHPNVTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a 174 (479)
.|+..+|-..++++.+. .|.|..++...=.+|...|+.......++++... ++|....+...+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 2445555555555666666666655555555432 1111122222333334456666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
.+.-++..+.+ +-|.-+-.++...+-..|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666655544 33444455555555556666666655544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.4 Score=39.47 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=99.4
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHHh-CCCCCC-HHhHHHHHHHHHhc---------CChhhHHHHHHHHH
Q 011714 86 SDF--NDLLMALVMLN-----EQETAVKFFSEASS-YGLAPN-SWTFSIMIRCYCNK---------NDFFEARKVIDCMF 147 (479)
Q Consensus 86 ~~~--~~ll~~~~~~~-----~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 147 (479)
..| ...+++..... ..+.|+.+|.+... ..+.|+ ...|..+..++... .+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 55666655522 34678889999882 223444 55565555544322 23445666677777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH
Q 011714 148 DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVY 226 (479)
Q Consensus 148 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 226 (479)
+.+ +-|......+..+..-.++.+.|...|++....+ +-...+|........-.|+.++|.+.+++..+..+. .-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 665 4577777777777777778888888888887764 334556666666667788888888888886654221 1123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 011714 227 TYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 227 ~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.....++.|+..+ .+.|++++-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3334444555543 5666666644
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.2 Score=38.51 Aligned_cols=295 Identities=16% Similarity=0.105 Sum_probs=187.0
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---
Q 011714 157 TFTILVNSLC--KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG--LCYVGRVEEAYEMLMNVKNDGLKPDVYTYT--- 229 (479)
Q Consensus 157 ~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 229 (479)
-|..|-.+++ -.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |..+-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3444544444 357777887777665432 23344444445443 3457999999999999986 333332
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHh--HHHHHHHHH
Q 011714 230 -AVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN-CLPDKI--SYSTLLNGL 305 (479)
Q Consensus 230 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~ 305 (479)
.|.-.--+.|+.+.|..+-+..-..-.. -...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 2222335789999999998887665322 34577889999999999999999998776543 233332 222233221
Q ss_pred H---hcCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 306 L---KWGKIRPAVSIFKEMVRFGFEVDERMMNSL-LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 306 ~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
. -..+...|...-.+..+ +.|+...-..+ ...+. +.|++.++-.+++.+-+..+.|+. + .+....
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf-----~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~a 305 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALF-----RDGNLRKGSKILETAWKAEPHPDI--A--LLYVRA 305 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHH-----hccchhhhhhHHHHHHhcCCChHH--H--HHHHHh
Confidence 1 12345566666666554 34443322222 22333 679999999999999888777653 2 222334
Q ss_pred cCCCHHHHHHHHHHHHHc-CCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc-cCCHhH
Q 011714 382 KGKKTDEALIHLHHAIEM-GHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ-LEKSYD 458 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 458 (479)
+.|+ .++.-+++.... ..+| +......+..+....|++..|..--+..... .|....|..|.+.-.. .|+-.+
T Consensus 306 r~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 306 RSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred cCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHH
Confidence 5554 333333333211 1344 4567777888889999999999888877765 5788888888886654 499999
Q ss_pred HHHHHHHHHhCCCCC
Q 011714 459 ACALYGAALKQGVIP 473 (479)
Q Consensus 459 A~~~~~~~~~~~~~p 473 (479)
+...+-+.++.--.|
T Consensus 382 vR~wlAqav~APrdP 396 (531)
T COG3898 382 VRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHhcCCCCC
Confidence 999988887753333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.19 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
+.+.++.++++|...|+-||..+-..++.++.+.+.
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 345667777777777777777777777777776664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.06 Score=31.84 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 408 FNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 408 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..+..+|...|++++|+++++++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.5 Score=38.95 Aligned_cols=256 Identities=11% Similarity=0.081 Sum_probs=138.2
Q ss_pred HHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPNIQ-TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP----DVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
++++.....-+.|+-. +...++..+.. +.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333445432 23334443333 4555555555444332111 245677788888888888888888866
Q ss_pred HHHCCCCCCHhhH-------HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHH---HHHHhcCC-hHHHH
Q 011714 251 AIERGVTPNVVTF-------NTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLL---NGLLKWGK-IRPAV 315 (479)
Q Consensus 251 ~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~ 315 (479)
+... .|+...- ..+-+..+. ..+..+=+.+|+.....++.. .....-++ .-+-+.|. -++|.
T Consensus 324 L~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekal 400 (549)
T PF07079_consen 324 LKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKAL 400 (549)
T ss_pred HHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHH
Confidence 6543 3333321 112222221 112233345555555554321 12222222 23344555 78899
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccch---hhccHHHHHHHHHHHHhCCCCCCh----hhHHHHHH--HHhcCCCH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWE---EKDLLEDAYQVFEKMTKKVSVTDP----GTYGIVIR--TLGKGKKT 386 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~g~~ 386 (479)
.+++.+++- .+........+..+.+..|. ....+..-..+-+-+.+.|..|-. ..-|.+.. .+...|++
T Consensus 401 nLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 401 NLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 999988864 22222222222222222111 123344444444445556665432 23344433 34578999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDM 445 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (479)
.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+...++.
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 999877776666 6899999999999999999999999998754 556665554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.67 Score=39.63 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C-CCCHHhHHHHHH
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG-L-APNSWTFSIMIR 128 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~ 128 (479)
.++.-++.++++++..|...|....+..+. -....+.-|...+...|++++|..+|..+.+.- - +.-+..+--|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 556666666777777777777666544322 233445556777777777777777777665431 1 112345556666
Q ss_pred HHHhcCChhhHHHHHHHHHhC
Q 011714 129 CYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (479)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666667777766666654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.6 Score=46.13 Aligned_cols=249 Identities=12% Similarity=0.077 Sum_probs=153.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN--VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
.....-+..+.+..-++-|..+-+.- +.+++ ........+-+.+.|++++|...|-+.... +.|. .++.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34566777788888888888776543 22222 223344445566789999999988776643 2332 3566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
-|....+..+...+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 777788888899999999999876 66667889999999999998877765543 3222 1124566777778888888
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
|..+-.+... +......+ +-..+++++|.+++..+.-...-+....|. ..+. ....++...++
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyG---k~Ll------~h~P~~t~~il 544 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYG---KILL------EHDPEETMKIL 544 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHH---HHHH------hhChHHHHHHH
Confidence 8766554433 23334444 345788999999987763211111112222 1121 24566666666
Q ss_pred HHHHhCCCCCChhhHH-----HHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 359 EKMTKKVSVTDPGTYG-----IVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
-+.......++..... .+-....-.+.+.....+++.|.+.
T Consensus 545 i~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 545 IELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred HHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 6555433322222222 2222334556788888888877654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.66 Score=34.61 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD---VYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 241 (479)
....|+.+.|++.|.+....- +.....||.-..++.-.|+.++|+.-+++..+..-.-+ ...|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666555432 33455666666666666666666666655554311111 22233333445566666
Q ss_pred HHHHHHHHHHHHCC
Q 011714 242 NEAMELLNEAIERG 255 (479)
Q Consensus 242 ~~a~~~~~~~~~~~ 255 (479)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.11 Score=30.66 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSY 114 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 114 (479)
++..+...+.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555566666666666655554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=4.2 Score=40.09 Aligned_cols=282 Identities=15% Similarity=0.051 Sum_probs=159.3
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhc
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNS-----LCKSGRLKEALEVLDQMGR-------IGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 203 (479)
...+.++++...+.| +...-..+..+ +....+.+.|+.+|+...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 33333333333 3345689999999998876 44 333566677777764
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCC
Q 011714 204 G-----RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC--KEGT 275 (479)
Q Consensus 204 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~ 275 (479)
. +.+.|..++......|. |+.......+..... ..+...|.++|....+.|.. ....+..++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 3 66779999999888774 355444333333333 34678999999999988754 2222222222221 2346
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc--hhhccHHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW--EEKDLLED 353 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~ 353 (479)
...|..++.+.-+.| .|...--...+..+.. +.++.+...+..+...|..........++........ ....+.+.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 788999999998887 3332222333334444 7777777777777666544322222222222110000 01234556
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH----cCCCHHHHH
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGKG----KKTDEALIHLHHAIEMGHIPRTITFNNVIQALC----GEGKIDKAL 425 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~ 425 (479)
+...+......+ +......+...|... .+++.|...+......+ ......+...+- -.. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 666666655443 334455555554433 34777777777766554 222222322221 123 56677
Q ss_pred HHHHHHHhCC
Q 011714 426 LLLFLMYEHA 435 (479)
Q Consensus 426 ~~~~~~~~~~ 435 (479)
+++++..+.+
T Consensus 530 ~~~~~~~~~~ 539 (552)
T KOG1550|consen 530 RYYDQASEED 539 (552)
T ss_pred HHHHHHHhcC
Confidence 7776666543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1 Score=39.65 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=96.0
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCChH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR---NCLPDKISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 312 (479)
-..|+..+|-..++++++. .+.|...+...=.+|...|+.+.....++++... +++-.+..-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4567777887788888776 4447777887788888888888888888887654 22222223333444566788888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhcCCCHHHH
Q 011714 313 PAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV---TDPGTYGIVIRTLGKGKKTDEA 389 (479)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A 389 (479)
+|++.-++..+.+ +-|..........+- -.++..++.+...+-...=.. .-...|-...-.+...+.++.|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVle-----m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLE-----MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHH-----hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 8888888877653 224444444444442 347777777766544321101 0112333445556677888888
Q ss_pred HHHHHHHH
Q 011714 390 LIHLHHAI 397 (479)
Q Consensus 390 ~~~~~~~~ 397 (479)
+++|+.-.
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 88887543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.4 Score=38.75 Aligned_cols=62 Identities=15% Similarity=-0.042 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
-..+..++.+.|+.++|++.++++.+.... -...+...|+.++...+.+.++..++.+-.+.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 345667777888888888888888754222 23346677888888888888888888876543
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.6 Score=37.26 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=12.8
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~ 322 (479)
.+.+.++++.|.++|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777777777776543
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.065 Score=30.03 Aligned_cols=28 Identities=21% Similarity=0.088 Sum_probs=21.9
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+|..|..+|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888899999999999999986643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.31 Score=41.54 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC
Q 011714 293 PDKISYSTLLNGLLK-----WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV 367 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 367 (479)
-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+ |. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK------gk---------------fi 123 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK------GK---------------FI 123 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc------cc---------------cc
Confidence 356666666666543 34455566667777777888777777777776632 11 11
Q ss_pred CChhhHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 011714 368 TDPGTYGIVIRTLGK-GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGK 420 (479)
Q Consensus 368 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 420 (479)
| -|.+-..+.. -.+-+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 124 P----~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 124 P----QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred c----HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1 1111111111 12345678888888888888998888888888876655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.3 Score=33.22 Aligned_cols=64 Identities=23% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV 256 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 256 (479)
.....+..+...|+-+...+++.++.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555566666666666666666542 244555556666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.8 Score=34.42 Aligned_cols=134 Identities=11% Similarity=0.152 Sum_probs=62.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
+++..+.+.+++|+...+..++..+.+.|++.....+ .+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444445556666666666666666666665443333 33334444333332221111 1223333333333332
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 256 VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112455556666666666666666554222 112223445555555555555555444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.64 E-value=3 Score=36.91 Aligned_cols=99 Identities=13% Similarity=0.061 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVE---EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (479)
++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+..|+..- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4455555665555433 344444444433211 23344444555555666666666666666541 112233444444
Q ss_pred HHHh--cCChhhHHHHHHHHHhCCCC
Q 011714 269 GYCK--EGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 269 ~~~~--~g~~~~a~~~~~~~~~~~~~ 292 (479)
.+.. ......+...++.+....+.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 4321 12223444555544443333
|
It is also involved in sporulation []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.1 Score=36.97 Aligned_cols=133 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHhcccchhh
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLK--WG----KIRPAVSIFKEMVRFGF---EVDERMMNSLLRGLCMKSWEEK 348 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 348 (479)
+.+.+++.|.+.|+.-+..+|.+....... .. ...++..+|+.|.+... .++...+..++..-. ..-.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~---~~~e 156 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTS---EDVE 156 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhccc---ccHH
Confidence 345566666666666555555443222222 11 23456677777765432 233344444443311 0112
Q ss_pred ccHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTDP--GTYGIVIRTLGKGKK--TDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
...+....+|+.+...+...+- .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2235566666666665544221 222333332222222 3466777777777777766665555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=2 Score=33.96 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=62.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh-hH--HHHHHHHhc
Q 011714 306 LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG-TY--GIVIRTLGK 382 (479)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~ 382 (479)
.+.+..++|+.-|..+.+.|...-......-..... .+.|+...|...|+++-.....|-.. -. ..-.-.+..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~----a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLL----AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 445555666666666665554322211111111111 24566666666666665544443221 01 111223455
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.|-++....-.+.+...+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6666666665555443333333334455555666777777777777766653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.36 E-value=3 Score=37.29 Aligned_cols=231 Identities=14% Similarity=0.106 Sum_probs=132.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCC-CCCCHHhHHHHH
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKD--GTNWSVSDFNDLLMALVMLNEQETAVKFFSE----ASSYG-LAPNSWTFSIMI 127 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~----~~~~~-~~~~~~~~~~l~ 127 (479)
..-+....+...++|+..+...... +.--...+|..+..+.++.|.+++++..--. ..+.. -..--..|..+.
T Consensus 11 ~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 11 EKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA 90 (518)
T ss_pred HHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667777766544321 1111334566677788888888776543222 11110 011123455566
Q ss_pred HHHHhcCChhhHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---C--CCHHHHHHHHH
Q 011714 128 RCYCNKNDFFEARKVIDCMFDN-GYHP---NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC---K--PNIQTYNCLLK 198 (479)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~ 198 (479)
+++-+.-++.+++.+-..-... |..| --.....+..++...+.++++++.|+...+... . ....++-.|..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666666666665544422 1112 112344566677777889999999987654211 1 12357788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCCHH-HH-----HHHHHHHHccCCHHHHHHHHHHHHH----CCCCC-CHhhH
Q 011714 199 GLCYVGRVEEAYEMLMNVKN----DGLKPDVY-TY-----TAVMDGFCKVGRSNEAMELLNEAIE----RGVTP-NVVTF 263 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 263 (479)
.|.+..++++|.-+..+..+ .++. |.. -| ..+.-++...|+..+|.+.-++..+ .|-.+ -....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 89999999988776655433 2222 221 12 2333456677888777777777654 33221 12334
Q ss_pred HHHHHHHHhcCChhhHHHHHHHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..+.+.|...|+.+.|+.-|++.
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 56778888999999888877765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.69 Score=40.17 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN-----DGLKPDVYTYT 229 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 229 (479)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556667777777777777777777777664 55677777777788888877777777777655 37777777766
Q ss_pred HHHHH
Q 011714 230 AVMDG 234 (479)
Q Consensus 230 ~li~~ 234 (479)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2 Score=33.32 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 54 AQRFVDRIK-ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 54 ~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
...++..+. .+.....+.+++.+...+. .+...++.++..+++.+. ...+..++. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 344455544 4568899999999988774 688899999999987643 444444442 1233445567777888
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS-GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
.+-++++.-++..+.. ... .+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 8888777777766532 222 23333333 6777777777652 255577766665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=3 Score=35.46 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
..+-.-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++-+.+++++|+..+++..+.-......-|...|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 333334444456777888888777776542 112244455556666777777777777777765533323334444444
Q ss_pred HHH
Q 011714 164 SLC 166 (479)
Q Consensus 164 ~~~ 166 (479)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.21 E-value=6.7 Score=39.21 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK 133 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (479)
.+|..|.+.|++++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4667777888888888877544432 244445566666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.3 Score=34.43 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=62.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHH-----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITF-----NNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
+...+...+++++|..-++..... |....+ ..|.......|.+++|+..++...+.+. .......-++++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345677888888888888877653 222223 3344566778888888888876665432 223344556788
Q ss_pred hccCCHhHHHHHHHHHHhCC
Q 011714 451 DQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~ 470 (479)
...|+.++|..-|+++++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 88889999999988888876
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.1 Score=35.11 Aligned_cols=224 Identities=22% Similarity=0.142 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 203 VGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-GVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355555666665555443221 2455666666777777777777777766542 12334455666666667777777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHhcccchhhccHHHHHHH
Q 011714 281 GLLKLMKKRNCLPDKISYSTLLN-GLLKWGKIRPAVSIFKEMVRFGFE--VDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357 (479)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 357 (479)
..+.........+ ......... .+...|+++.+...+.+....... ............+ ...++.+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~ 189 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL-----EALGRYEEALEL 189 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH-----HHhcCHHHHHHH
Confidence 7777776644332 122222222 566777777777777776442110 1111111111111 134666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
+..............+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665432212345566666666666666676666666553 222 233333333333555566666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.81 Score=39.77 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-----RGVTPNVVTFN 264 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 264 (479)
..++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44677788888899999999999999988753 3788999999999999999999999988765 48888888877
Q ss_pred HHHHHHH
Q 011714 265 TLFNGYC 271 (479)
Q Consensus 265 ~l~~~~~ 271 (479)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7777643
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.1 Score=32.89 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 011714 48 NPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTN--WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI 125 (479)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 125 (479)
.|.....+.-...++.++..+|+..|+.+..+-+. -....--.|+.++.+.+++++|+..+++.++....--..-|..
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 44456667778889999999999999999876432 2456667799999999999999999999987753222345666
Q ss_pred HHHHHHhcC
Q 011714 126 MIRCYCNKN 134 (479)
Q Consensus 126 l~~~~~~~~ 134 (479)
.+.+++...
T Consensus 88 Y~~gL~~~~ 96 (142)
T PF13512_consen 88 YMRGLSYYE 96 (142)
T ss_pred HHHHHHHHH
Confidence 666655433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=7.8 Score=38.32 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=165.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hhHHHHHHHHHhCCC
Q 011714 79 DGTNWSVSDFN-----DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF--FEARKVIDCMFDNGY 151 (479)
Q Consensus 79 ~~~~~~~~~~~-----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 151 (479)
-|++.+..-|. .+|.-+...+.+..|+++-..+...-... ...|......+++..+. +++.+.+++-.....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 35555544443 34556666777777777776665322111 45566566555554321 122222222222211
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCK----PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG------- 220 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 220 (479)
-....|..+.+-...+|+.+-|..+++.=...+-. .+..-+...+.-....|+.+-...++-.+...-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 23445566666666677777776666543222100 011123334444455555555555544443320
Q ss_pred ----CCCCHHHHHHHHH--------HHHccCCHHHHHHHH--HHHHH----CCCCCCHhhHHHHHHHHHhcCCh---hhH
Q 011714 221 ----LKPDVYTYTAVMD--------GFCKVGRSNEAMELL--NEAIE----RGVTPNVVTFNTLFNGYCKEGTP---MKG 279 (479)
Q Consensus 221 ----~~~~~~~~~~li~--------~~~~~~~~~~a~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~g~~---~~a 279 (479)
.+.....|.-+++ .+...++-.++...| +...+ .+..|+. ....+.+.+.... ++|
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence 0111111211111 111222222222222 11000 1222222 3333444444331 112
Q ss_pred -------HHHHHHHHh-CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccH
Q 011714 280 -------VGLLKLMKK-RNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLL 351 (479)
Q Consensus 280 -------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 351 (479)
+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. .||-..+..-+.+++ ..+++
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa-----~~~kw 731 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA-----DIKKW 731 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH-----hhhhH
Confidence 222222222 1323334455666667888999999999887765 577777877777776 56777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011714 352 EDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFL 430 (479)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (479)
++-++.-+..+ .+..|.-.+.+|.+.|+.++|.+++-+.- +.. -...+|.+.|++.+|.++--+
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 76655544332 24678899999999999999999886532 111 567788999999998876543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.92 Score=36.74 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=24.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.++.+.+.++.|+.-..+.++.+ +........-..+|.+..++++|++-|+++++
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444555555555554444443 11222233333445555555555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.50 E-value=6.8 Score=36.89 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
.+..++-+.|+.++|++.+++|.+..... .......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445555666666666666665432111 22344556666666666666666665543
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.43 E-value=12 Score=39.36 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKN 218 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 218 (479)
.|+ .....++.+|.+.+ .++++++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44456777777776 66666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.8 Score=35.10 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN--SWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+|+.....+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5567788888888888888888888776644333 4456677777777888887777776665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=4.3 Score=34.24 Aligned_cols=224 Identities=18% Similarity=0.120 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 011714 98 LNEQETAVKFFSEASSYGLA-PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN-GYHPNVTTFTILVNSLCKSGRLKEAL 175 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 175 (479)
.+....+...+......... .....+......+...+++..+...+...... ........+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555555555543211 12456666666677777777777777666542 22344555666666666667777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLK-GLCYVGRVEEAYEMLMNVKNDGL--KPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777766543222 122222222 56677777777777777644211 0123333333334555667777777776666
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5421112445555666666666666666666666554211 122233333333344455555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.9 Score=33.78 Aligned_cols=186 Identities=16% Similarity=0.047 Sum_probs=97.5
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
.|-..|-+.-|.--|.+.....+. -+..||-+.-.+...|+++.|.+.|+...+.+..-+....|.-| ++.-.|+++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 355566666677667666664322 34567777777788888888888888887765332222222222 2344677777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE-KMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
|.+-+...-+.+.... +..+.-.+. +..-++.+|..-+. +.... |..-|...+-.+.-.+-.++ .+
T Consensus 152 Aq~d~~~fYQ~D~~DP---fR~LWLYl~----E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e--~l 218 (297)
T COG4785 152 AQDDLLAFYQDDPNDP---FRSLWLYLN----EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE--TL 218 (297)
T ss_pred hHHHHHHHHhcCCCCh---HHHHHHHHH----HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH--HH
Confidence 7766655544332211 222221111 13345555554433 33322 33334433333322111111 12
Q ss_pred HHHHHHcCCCC-------chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 393 LHHAIEMGHIP-------RTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 393 ~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
++++... -.. =..||-.+..-+...|+.++|..+|+..+..+
T Consensus 219 ~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 MERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2333221 111 12466777777778888888888888777664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=9 Score=37.82 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHH--H-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcC--
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLM--A-LVMLNEQETAVKFFSEASS-------YGLAPNSWTFSIMIRCYCNKN-- 134 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~--~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 134 (479)
..|...++...+.|.. .....-.++. + .....+.+.|+..|..+.+ .| .......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4566666666555532 1111111111 1 2245566777777776655 33 2224444555555432
Q ss_pred ---ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCH
Q 011714 135 ---DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK-SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC----YVGRV 206 (479)
Q Consensus 135 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 206 (479)
+...|..++...-+.| .|+....-..+..... ..+...|.++|....+.|. ...+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCH
Confidence 3444666666655554 2233332222222111 1245566666666665551 112222222111 12345
Q ss_pred HHHHHHHHHHHHCC
Q 011714 207 EEAYEMLMNVKNDG 220 (479)
Q Consensus 207 ~~a~~~~~~~~~~~ 220 (479)
..|..++.+..+.|
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 55666666655555
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.28 E-value=8.2 Score=37.15 Aligned_cols=348 Identities=11% Similarity=0.014 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+...|..++.---...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++-+. |++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5666777777666666667777888877754 45443 556666666788899999999998875 4677777777766
Q ss_pred HHHH-hcCChHHHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 011714 163 NSLC-KSGRLKEALEVLDQMGRI-GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC--- 236 (479)
Q Consensus 163 ~~~~-~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 236 (479)
..+. ..|+.+...+.|++.... |. --+...|...|.--...+++.....+|++.++. ....|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 5554 467788888888887653 21 124567788888778888888899999888863 2223333322222
Q ss_pred cc------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh--HHHHHH------
Q 011714 237 KV------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI--SYSTLL------ 302 (479)
Q Consensus 237 ~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~------ 302 (479)
.. ...+++.++-...... ......+...+-. =..+...+.+.+.. ..+.+-
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~--~~~v~~~~~~s~~l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEEL--EIGVKDSTDPSKSLTEEKTILKRIVSIH 261 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHH--HHHHhhccCccchhhHHHHHHHHHHHHH
Confidence 11 1222222222111110 0000011111111 11111111111111 111111
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 303 -NGLLKWGKIRPAVSIFKEMVRFG---FEV----DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 303 -~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
.++-......+....++.-+++. +.| +..++...+.... ..|+.+...-.|++..-.-.. -...|-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i-----~~g~~~~~~~l~ercli~cA~-Y~efWi 335 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEI-----TLGDFSRVFILFERCLIPCAL-YDEFWI 335 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhh-----hcccHHHHHHHHHHHHhHHhh-hHHHHH
Confidence 11222222333334444443321 122 3344555555443 668888888888876532111 235566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhcc
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSR-TSYDMLITKLDQL 453 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 453 (479)
..+......|+.+-|..++....+.-++-.+.+-..-...+-..|++..|..+++.+.+.. |+. ..-..-+....+.
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 6777777779999998888877665433233222222223445789999999999998765 433 3333344556678
Q ss_pred CCHhHHHH
Q 011714 454 EKSYDACA 461 (479)
Q Consensus 454 g~~~~A~~ 461 (479)
|..+.+..
T Consensus 414 ~~~~~~~~ 421 (577)
T KOG1258|consen 414 GNLEDANY 421 (577)
T ss_pred cchhhhhH
Confidence 88888773
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.24 E-value=12 Score=39.15 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcC--ChhhHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKN--DFFEARKVIDCMF 147 (479)
Q Consensus 122 ~~~~l~~~~~~~~--~~~~a~~~~~~~~ 147 (479)
-...+|.+|.+.+ .++.++....+..
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3345556666655 5555555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.97 Score=31.67 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 386 TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
.-++.+-+..+....+.|++.+..+.++||.+.+++..|.++|+-...+. ..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34455556666666777888888888888888888888888887666443 223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.11 Score=28.63 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=18.4
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHH
Q 011714 428 LFLMYEHAKIPSRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
+++.++.. +-+...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 445666666666666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.8 Score=35.15 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD--KISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.+..+...|++.|+.+.|++.+.++.+....+. ...+..+|+.....+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455666677777777777777777666533332 2345556666667777777666666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.90 E-value=6.5 Score=35.00 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 137 FEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
++...+++.|.+.|+..+..+|-+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHH
Confidence 344455555555555555444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.26 Score=26.96 Aligned_cols=27 Identities=30% Similarity=0.226 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.28 Score=27.39 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.93 Score=32.12 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 388 EALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 388 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+-...+. .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 444455555556677788888888888888888888888887776553 222335665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.27 E-value=4.6 Score=31.75 Aligned_cols=86 Identities=12% Similarity=-0.159 Sum_probs=42.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..++.+++..++..+....+. ....-..-...+...|++.+|+.+|+++.+.. |....-..|+..|.....-..=..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 445667777777766654433 22222233444566777777777777765432 333333344444433333223333
Q ss_pred HHHHHHhCC
Q 011714 427 LLFLMYEHA 435 (479)
Q Consensus 427 ~~~~~~~~~ 435 (479)
+-+++.+.+
T Consensus 99 ~A~evle~~ 107 (160)
T PF09613_consen 99 YADEVLESG 107 (160)
T ss_pred HHHHHHhcC
Confidence 344444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.24 E-value=6.7 Score=33.58 Aligned_cols=184 Identities=12% Similarity=0.079 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCCH
Q 011714 170 RLKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GL--KPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~ 241 (479)
++++|+.-|.+..+...... -.+...++..+.+.+++++....|.++... .+ .-+....|.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45566666655554321111 122334455566666666666666555421 01 11234455555555544444
Q ss_pred HHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC------------CCCCCHhHHHHHHHH
Q 011714 242 NEAMELLNEAIER-----GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR------------NCLPDKISYSTLLNG 304 (479)
Q Consensus 242 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~ 304 (479)
+-...+++.-++. +-..--.|-+.|...|...|.+.+..++++++... |.. =...|..-|..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhh
Confidence 4444444332211 11111122244566666677777777777666432 111 12456667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhcccchhhccHHHHH
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGF-EVDERMMNSLLRGLCMKSWEEKDLLEDAY 355 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 355 (479)
|....+-.+...+|++.+...- .|. .....+++-|.-...-+.|.+++|-
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHH
Confidence 8777777777777777653322 233 3334455555433334556666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.6 Score=33.19 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFG---FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFE 359 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 359 (479)
.|...|-.+....|+..|...++.-...+ -..+..+...|+.+| ..|+.+++.+++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay------d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY------DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh------ccCCHHHHHHHHc
Confidence 34455555666667777777777633222 233556666777776 5677777666653
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.92 E-value=8 Score=33.74 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhc-C-ChhhHHHHH
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS-YGLAPNSWTFSIMIRCYCNK-N-DFFEARKVI 143 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 143 (479)
++-+..++-+...-..-...-|..|+. ++....+|+++|+.... ..+--|..+...+++..... + ....-.++.
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV 189 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVV 189 (292)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHH
Confidence 445555555443222111122555543 34556788888884332 23566888888888887762 2 333344555
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H
Q 011714 144 DCMFDN-GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN-----V 216 (479)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~ 216 (479)
+-+... +..++..+...++..+++.+++.+-.++++..... +...|...|..+|+.....|+..-..++.++ +
T Consensus 190 ~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwi 269 (292)
T PF13929_consen 190 DFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWI 269 (292)
T ss_pred HHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEe
Confidence 555433 34678888889999999999999999999988765 5567888999999999999999888887765 3
Q ss_pred HHCCCCCCHHHHHHHHHHHHc
Q 011714 217 KNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~~~ 237 (479)
++.++..+...-..+-+.+.+
T Consensus 270 kR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 270 KRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred eecCCcCCHHHHHHHHHHHHh
Confidence 455677777666666555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.55 Score=41.27 Aligned_cols=50 Identities=16% Similarity=0.014 Sum_probs=27.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++|.+++|++.|.......+. +++.+..-..+|.+.+++..|..-...++
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456666666666655544332 45555555566666666655555444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.61 E-value=5.6 Score=31.30 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWT-FSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+.++.+++..++.-+.-. .|.... -..-...++..|++.+|..+++++..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555554432 222211 11122334445555555555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.54 E-value=11 Score=34.60 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP---RTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
...+|..++..+.+.|.++.|...+.++...+... .+.+...-+......|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33567777788888888888888887776543111 233444445566667777888877777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.26 Score=27.11 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=11.4
Q ss_pred ChhhHHHHHHHHhcCCCHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
+...|+.+..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.10 E-value=19 Score=36.59 Aligned_cols=224 Identities=15% Similarity=0.086 Sum_probs=119.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHH-HHHhcCChhhHHHHHHHHHhC----CCCCCHhHHHHHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVV-------TFNTLFN-GYCKEGTPMKGVGLLKLMKKR----NCLPDKISYSTLLN 303 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 303 (479)
....++.+|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988876542222221 2333322 334678899999888877654 22345566777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---HHHHHhcccchhhcc--HHHHHHHHHHHHhCCC--CC----Chhh
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNS---LLRGLCMKSWEEKDL--LEDAYQVFEKMTKKVS--VT----DPGT 372 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~--~~----~~~~ 372 (479)
+..-.|++++|..+.....+..-.-+...+.. +..+-.. ..+|. ..+....|........ .| -..+
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il---~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL---EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 88889999999988877654322223333322 2222211 24452 3333444444332211 11 1123
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCchH----HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----CHhh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMG--HIPRTI----TFNNVIQALCGEGKIDKALLLLFLMYEHAKIP----SRTS 442 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 442 (479)
+..+..++.+ .+.+..-...-.+.| ..|... .+..|+......|++++|...++++......+ +...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444444444 333332222222211 122221 22356777888999999999999887654322 2222
Q ss_pred HHHHHHHH--hccCCHhHHHHHHHH
Q 011714 443 YDMLITKL--DQLEKSYDACALYGA 465 (479)
Q Consensus 443 ~~~l~~~~--~~~g~~~~A~~~~~~ 465 (479)
-...+... ..+|+...+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 23333332 356777777666555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.62 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..|..+..++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888888899999999999988874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.73 E-value=17 Score=35.18 Aligned_cols=369 Identities=10% Similarity=0.042 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhhHHHHHHH
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYC-NKNDFFEARKVIDC 145 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~ 145 (479)
..+..+++.+...- +.----|......=.+.|..+.+.++|++... |++.+...|...+.-+. ..|+.+.....|+.
T Consensus 62 ~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34444555555332 21223455566666778999999999999886 56777888877775544 45778888888888
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---Hhc------CCHHHHHHHHH
Q 011714 146 MFDN-GY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL---CYV------GRVEEAYEMLM 214 (479)
Q Consensus 146 ~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~------~~~~~a~~~~~ 214 (479)
.... |. -.+...|...|..-..++++.....+++++++. |. .-++..-.-| ... ...+++.++-.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 8753 21 124567888888888899999999999999974 32 2233332222 222 23455555544
Q ss_pred HHHHC----CCCCCHHHHHHHHHH-------------------------HHccCCHHHHHHHHHHHHHC---CCC----C
Q 011714 215 NVKND----GLKPDVYTYTAVMDG-------------------------FCKVGRSNEAMELLNEAIER---GVT----P 258 (479)
Q Consensus 215 ~~~~~----~~~~~~~~~~~li~~-------------------------~~~~~~~~~a~~~~~~~~~~---~~~----~ 258 (479)
..... ...+.......-+.- +.......+....++.-++. .++ +
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 44421 000111111111111 11111122222223222221 111 3
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHH
Q 011714 259 NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF--EVDERMMNSL 336 (479)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 336 (479)
+..+|...+..-...|+.+.+.-++++..-. +..-...|-..+.-....|+.+.|..++....+--+ .|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567788888888899999998888877542 111223344444444555888888887776654322 2333333333
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCHHHHH---HHHHHHHHcCCCCchHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP-GTYGIVIRTLGKGKKTDEAL---IHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
+.- ..|++..|..+++.+...- |+. ..-..-+....+.|..+.+. +++....+.. -+..+...+.
T Consensus 375 f~e-------~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~ 443 (577)
T KOG1258|consen 375 FEE-------SNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLY 443 (577)
T ss_pred HHH-------hhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHH
Confidence 332 4589999999999998765 332 22333345556777777777 4443333221 1222222222
Q ss_pred H-----HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 413 Q-----ALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 413 ~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
- .+.-.++.+.|..++.++.+.. +++...|..++......+
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 1 2234688999999999998874 667778888888766655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.5 Score=29.75 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
..+-++.+...+..|++.+..+.+++|.+.+++..|+++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444455555566677777777777777777777777777655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=9.4 Score=31.67 Aligned_cols=161 Identities=16% Similarity=0.044 Sum_probs=83.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNCLLK 198 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 198 (479)
+..||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++.-|.+-+.+.-+.+ -.|-...|.-++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 5678888888888888888888888888765433333344434333 3577777776666655442 112122232222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCC------CCHhhHHHHHHHHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSNEAMELLNEAIERGVT------PNVVTFNTLFNGYC 271 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~ 271 (479)
-..-++.+|..-+.+--+ ..|..-|...|-. |...=..+ .+++.+...... .-..||--+...+.
T Consensus 177 --E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 233455555544433221 1133333322222 21111111 122222211000 11346777778888
Q ss_pred hcCChhhHHHHHHHHHhCC
Q 011714 272 KEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~~ 290 (479)
..|+.++|..+|+-....+
T Consensus 249 ~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 SLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 8888888888888777654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.62 Score=25.37 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=14.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+|..++.++...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.75 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888888766
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.39 E-value=6.7 Score=34.47 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+.++++.++..=.+.|+-||..+++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555566666666666666665555555554443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=6.1 Score=36.82 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=22.1
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 381 GKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
...|+++.+...+...... +.....+..++++...+.|+++.|...-+.|...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 3444444444444333221 1122333444444444444444444444444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.26 E-value=20 Score=33.99 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHH
Q 011714 223 PDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLL 302 (479)
Q Consensus 223 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 302 (479)
.|.....+++..+.....+.-.+.+..+|...| -+-..|..++.+|..+ ..++-..+|+++.+..+. |+..-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355555666667766666666666666776654 2455666777777766 456666777766665443 333333444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhC-CCCCChhhHHHH
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEV-----DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK-VSVTDPGTYGIV 376 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 376 (479)
..|-+ ++..++..+|.++..+-++- -...+..+.... ..+.+....+...+... +...-...+..+
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-------~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-------GDDKDFFLRLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-------cccHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 43333 66666666766665432110 011222222211 24455555555555432 111122334444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
-.-|....++++|++++..+.+.
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhh
Confidence 45555566666666666655554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.08 E-value=9 Score=29.68 Aligned_cols=51 Identities=14% Similarity=-0.122 Sum_probs=28.5
Q ss_pred hccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 348 KDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 348 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
.++.+++..+++.+.-..+. ....-..-...+...|++.+|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 46666666666666654333 2222222334455667777777777776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.87 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
|..+..++...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.76 E-value=51 Score=37.92 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=86.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGL--APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
.+..+-.+.+.+.+|+..++.-..... .-....|..+...|...++.+...-+...... +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 344455667788888888877311100 11233344444578888888877766654221 222222 2334456
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY-TAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~ 246 (479)
.|++..|...|+++.+.+ ++...+++.++......|.+..++-..+-..... .+....+ +.-+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 788888888888888764 3346667777777667777777766555544331 2222222 222344456666666666
Q ss_pred HHH
Q 011714 247 LLN 249 (479)
Q Consensus 247 ~~~ 249 (479)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=30 Score=34.86 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTD---PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 425 (479)
.+.+.|...+.........+. ...+..+....+..+...+|...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 455777777776643322111 1223444433344332455666555433221 23334444444555777777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 426 LLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
..+..|.... .-...-...+..++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777765432 2233444556667666788888888777763
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.4 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+|..+...|...|++++|.+.|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667778888888888888888888763
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.01 E-value=11 Score=33.28 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 011714 185 GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG---LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVV 261 (479)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (479)
|.+....+...++..-....+++.++.++-+++..- ..|+. +-.+.++.+.+ -++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 445555566666666666778888888887776531 11221 12233443333 36778888888888899999999
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887777654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.62 E-value=14 Score=30.16 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=38.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 011714 303 NGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK 382 (479)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (479)
..+...|++++|...++..+.. +....+..++..-........|.+++|+..++.....+.. ......-.+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 4455666666666666655532 1222222222211100001345555555555444433211 1112223344555
Q ss_pred CCCHHHHHHHHHHHHHc
Q 011714 383 GKKTDEALIHLHHAIEM 399 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~ 399 (479)
.|+-++|..-|++.+..
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 55555555555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.53 E-value=6.4 Score=32.28 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHhccCCHhHH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA---KIPSRTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 459 (479)
++|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+.. -.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444444443334443333333333 345566665555555432 134555666666666666665554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.8 Score=24.77 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.14 E-value=20 Score=31.40 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011714 136 FFEARKVIDCMFD-NGYHPNVTTFTILVNSLCK-SG-RLKEALEVLDQMGRI-GCKPNIQTYNCLLKGLCYVGRVEEAYE 211 (479)
Q Consensus 136 ~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 211 (479)
+.+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++.+..+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233455555666655554 11 122222333333221 234555566666666666666666666
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 212 MLMNVKND-GLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
+++..... +..-|...|..+|+.....|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66655544 34445666666666666666655444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.07 E-value=6.8 Score=31.46 Aligned_cols=110 Identities=18% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHH---HHHHhcCCCHHHH-------HHHHHHHHHcCCCCc-hHHHHHHHHHHHcC-
Q 011714 351 LEDAYQVFEKMTKKVSVTDPGTYGIV---IRTLGKGKKTDEA-------LIHLHHAIEMGHIPR-TITFNNVIQALCGE- 418 (479)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A-------~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~- 418 (479)
++.|++.++.....++. |...++.- +.-+.+.....++ +.-|++++. +.|+ ..++..+..++...
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 55666666665555444 45444333 3333333443444 444445544 4565 36777777776542
Q ss_pred ---CC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 419 ---GK-------IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 419 ---g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+ +++|...|++..+. .|+...|+.-+.... +|-++..++.++++
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 23 55556666666654 588888887776653 45666666666554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.91 E-value=18 Score=35.10 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=8.9
Q ss_pred HHHcCCCHHHHHHHHH
Q 011714 414 ALCGEGKIDKALLLLF 429 (479)
Q Consensus 414 ~~~~~g~~~~a~~~~~ 429 (479)
++...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 4445566666655553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.90 E-value=14 Score=30.39 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
++|.+.|-++...+.--++.....|...| ...+.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555544333333333333333 344555555555554432 2234555555555555555555554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.75 E-value=9.4 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 105 VKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
.+-++.+....+.|++.+....+.+|.+.+++..|.++++.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444444445544444444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.69 E-value=30 Score=32.96 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 187 KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
..|....-+++..+..+-.+.-+..+..+|...| .+...|..++.+|... ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4567777888899988888999999999998865 3677888999999888 567888999988887554 55545555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC--C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHH
Q 011714 267 FNGYCKEGTPMKGVGLLKLMKKRNCLP--D---KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-GFEVDERMMNSLLRGL 340 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 340 (479)
...|-+ ++..++..+|.++..+-++. + ...|.-+.. .-..+.+....+..++... |..--...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 88888998998886653221 1 123333332 1245677777777777643 3322233333333444
Q ss_pred hcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 341 CMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 341 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
+...++++|++++..+.+.+.. |..+-..++..+
T Consensus 216 -----s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 -----SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred -----ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 4678999999999988887655 555555555544
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=86.47 E-value=37 Score=33.80 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCcchHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011714 46 KENPRSLQAQRFVDRIKASPLKERIDIFDSIKKDG-TNWS-VSDFNDLLMALVMLNEQETAVKFFSEAS 112 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 112 (479)
...+.+.....+++.+.........+..+++.... +..+ +.-|+ .+..+.-.|.++.|.+++....
T Consensus 108 ~~~~~~~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 108 DSQPRGPVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp TTTTHHHHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred CcccCCchHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 34444555666777773333222222222222211 2222 56666 7888888999999999985433
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.23 E-value=6.4 Score=32.62 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
+..++.+.+.++.++|+...++-++.. +.|...-..++..+|-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 444555555666666666665555443 3444455555666666666666655554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.60 E-value=18 Score=35.01 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 93 MALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 93 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
....+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 34456677777776655433 455677777777777777777777765432 334555666666666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
....+-....+.| +-|. + ..+|...|+++++.+++..-
T Consensus 710 ~l~~la~~~~~~g-~~N~-A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNNL-A----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhc-ccch-H----HHHHHHcCCHHHHHHHHHhc
Confidence 5555555555554 2222 2 22455567777777766544
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.35 E-value=50 Score=34.30 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011714 269 GYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLL 306 (479)
Q Consensus 269 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (479)
.|......+-++.+++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455556666666666655443344444444444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.07 E-value=16 Score=28.37 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.++.+++..+++.|.-. .|+.. .-..-...+...|++++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 56666666666665532 23211 1112223344566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.94 E-value=0.43 Score=37.21 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCh
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKI 311 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 311 (479)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++ . .+..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~----~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---T----SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---S----SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---c----ccccCHHHHHHHHHhcchH
Confidence 44444555555555555555554434445555666666666655555555544 1 1112223444555555555
Q ss_pred HHHHHHHHH
Q 011714 312 RPAVSIFKE 320 (479)
Q Consensus 312 ~~a~~~~~~ 320 (479)
+++..++.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.8 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=17.5
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 445 MLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.|..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35567777777777777777776543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.71 E-value=7.7 Score=28.89 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 388 EALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 388 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+..+-+......++.|++.+....+++|.+.+|+..|.++|+-+..+. .+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-ccHHHHHHHHHH
Confidence 344445555666777888888888888888888888888888776553 223334555543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.57 E-value=9 Score=31.83 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
++.+.+.+.+.+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344444455555555554444432 233344444555555555555555444443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.48 E-value=3 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.12 E-value=34 Score=31.37 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=43.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 294 DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV---DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
...++...++.+.+.|.++.|...+..+...+... .......-...+- ..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-----~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-----AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Confidence 45678888889999999999999998887643211 1222222223332 45888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.89 E-value=1.9 Score=23.01 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+-.++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667788888889999888888774
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.54 E-value=29 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHA 396 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~ 396 (479)
.-++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45677888889999988765443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.37 E-value=0.43 Score=37.21 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 249 (479)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444445555555555544333344455555555555544444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.05 E-value=18 Score=31.33 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC---- 236 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 236 (479)
=|.+++..|+|.+++...-+.-+.--+.-..+...-|-.|.+.+.+..+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 4667777788888777665544321122234455556667778887777777776665422223334655555544
Q ss_pred -ccCCHHHHHHHH
Q 011714 237 -KVGRSNEAMELL 248 (479)
Q Consensus 237 -~~~~~~~a~~~~ 248 (479)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.58 E-value=57 Score=32.83 Aligned_cols=403 Identities=16% Similarity=0.152 Sum_probs=199.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHhHHHH-HHHHHh
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVS-----DFNDLLMALVMLNEQETAVKFFSEASSYG----LAPNSWTFSIM-IRCYCN 132 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~ 132 (479)
..+.++|...++........++.. .-..++..+.+.+... |....++.++.- ..+-...+..+ +..+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 456788888887654222122221 2234455666555555 999888866431 12223334444 333334
Q ss_pred cCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCC---------CCCCHHHHHHHHH
Q 011714 133 KNDFFEARKVIDCMFDNG---YHPNVTTFTILVNSLC--KSGRLKEALEVLDQMGRIG---------CKPNIQTYNCLLK 198 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~ 198 (479)
.++...|.+.++.+.... ..|...++..++.+.. +.+..+++.+.++++.... ..|-..+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 479999999998887432 2344555555555544 4566677777777663321 1345667777776
Q ss_pred HH--HhcCCHHHHHHHHHHHHH-------CC-CC----------------------CCHHH---------HHHHHHH--H
Q 011714 199 GL--CYVGRVEEAYEMLMNVKN-------DG-LK----------------------PDVYT---------YTAVMDG--F 235 (479)
Q Consensus 199 ~~--~~~~~~~~a~~~~~~~~~-------~~-~~----------------------~~~~~---------~~~li~~--~ 235 (479)
.+ ...|+++.+...++++.+ .. .+ +.... ..-++.+ .
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~ 311 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN 311 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH
Confidence 55 456777777666655532 11 00 00001 1111221 2
Q ss_pred HccCCHHHHHHHHHHHHHC--------CCCCC--------HhhHHHHHH---------HHHhcCChhhHHHHHHHHHhCC
Q 011714 236 CKVGRSNEAMELLNEAIER--------GVTPN--------VVTFNTLFN---------GYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~l~~---------~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
+..+..+.|.+++++..+. ...+. ...|...+. ..+-.+++..|...++.+....
T Consensus 312 ~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~ 391 (608)
T PF10345_consen 312 LYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLC 391 (608)
T ss_pred hhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2344444565555554321 11111 112222222 2235788999999999887542
Q ss_pred C-CC-----CHhHHHHHHHH--HHhcCChHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH-
Q 011714 291 C-LP-----DKISYSTLLNG--LLKWGKIRPAVSIFK--------EMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED- 353 (479)
Q Consensus 291 ~-~~-----~~~~~~~l~~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 353 (479)
- .| ....+...+.+ +-..|+.+.|...|. .....+...+..++..+=....... .......+
T Consensus 392 ~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~-~~~~~~~~~ 470 (608)
T PF10345_consen 392 QRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY-ESSRDDSES 470 (608)
T ss_pred hcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh-hcccchhhh
Confidence 1 11 12223333333 335699999999997 4444555545444443322222110 11122222
Q ss_pred -HHHHHHHHHhC---CCCCChhhHHHH-HHHHhcCC--CHHHHHHHHHHHHHcC--CCCc----hHHHHHHHHHHHcCCC
Q 011714 354 -AYQVFEKMTKK---VSVTDPGTYGIV-IRTLGKGK--KTDEALIHLHHAIEMG--HIPR----TITFNNVIQALCGEGK 420 (479)
Q Consensus 354 -a~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~ 420 (479)
+..+++.+... .+..+..++..+ +.++.... ...++...+.+..+.- ...+ ..+++.+...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 66777766542 111222333333 33333222 2234444444333211 1111 122333333333 678
Q ss_pred HHHHHHHHHHHHhCCCC-C--CHhhHH-----HHHHHHhccCCHhHHHHHHHHHHh
Q 011714 421 IDKALLLLFLMYEHAKI-P--SRTSYD-----MLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 421 ~~~a~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
..+.............. | ....|. .+.+.+...|+.++|.....+...
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 77766555543321111 1 334452 344457888999999998887643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.57 E-value=3.5 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555666666666666666665554
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.54 E-value=21 Score=29.28 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKP----DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
...|++++|..-|...+..-... ....|..-..++.+.+.++.|+.-....++.+.. .......-..+|.+...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhH
Confidence 44555555555555554431111 1223333344555666666666666555554322 111122223355555666
Q ss_pred hhHHHHHHHHHhC
Q 011714 277 MKGVGLLKLMKKR 289 (479)
Q Consensus 277 ~~a~~~~~~~~~~ 289 (479)
++|+.-|+++...
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.42 E-value=21 Score=31.06 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC-- 201 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 201 (479)
..=|++++..+++.++....-+--+.--+.-..+...-|-.|.+.+++..+.++-......--.-+...|..++..|.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 344678888899888887665554332222344555556668889999888888887765432334455776666554
Q ss_pred ---hcCCHHHHHHHH
Q 011714 202 ---YVGRVEEAYEML 213 (479)
Q Consensus 202 ---~~~~~~~a~~~~ 213 (479)
=.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 468899998887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.35 E-value=34 Score=30.03 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
......|..+|.+.+|.++.++.+..+ +.+...+..++..+...||--.+..-+..+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334455666666666666666665543 234555666666666666655555444443
|
|
| >cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH | Back alignment and domain information |
|---|
Probab=81.48 E-value=27 Score=28.26 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=14.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 011714 127 IRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+-.|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666777777777666665
|
Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.39 E-value=5.6 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.177 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCHHHHHHH
Q 011714 382 KGKKTDEALIHLHHAIEMGHIPR--TITFNNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 427 (479)
...+.++|+..|+.+++.-..+. -.++..++.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666554422221 12445555666666666665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.98 E-value=5.9 Score=26.73 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhccCCHhHHHHHHH
Q 011714 417 GEGKIDKALLLLFLMYEHAKIPSR--TSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 417 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
...+.++|+..|+...+....+.. .++..++.+|+..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999987543322 456778889999999999877643
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.78 E-value=2.5 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=10.1
Q ss_pred HHHHHHhccCCHhHHHHHHH
Q 011714 445 MLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~ 464 (479)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.77 E-value=36 Score=29.38 Aligned_cols=191 Identities=11% Similarity=0.117 Sum_probs=118.4
Q ss_pred HHhcCChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC--CCCHHhHHHHHHHHH
Q 011714 60 RIKASPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASS---YGL--APNSWTFSIMIRCYC 131 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~--~~~~~~~~~l~~~~~ 131 (479)
.++...+++|+.-|..+.+... .+--.++..++....+.+++++....|.++.. ..+ .-+..+.++++..-.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3566778999999988764332 34556677888899999999999988888753 222 234566778887777
Q ss_pred hcCChhhHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhCCC----C-------CCHHHHHH
Q 011714 132 NKNDFFEARKVIDCMFDN-GYHPNVT----TFTILVNSLCKSGRLKEALEVLDQMGRIGC----K-------PNIQTYNC 195 (479)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~-------~~~~~~~~ 195 (479)
...+.+...++|+.-.+. .-..+.. +-.-|...|...|++.+..+++.++...-- . .-...|..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 777766666665543321 0001222 224566777777888888888777754210 1 12346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HccCCHHHHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKND-GLKPDVYTYTAVMDGF-----CKVGRSNEAMELLNEA 251 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~-----~~~~~~~~a~~~~~~~ 251 (479)
-|..|....+-.....+|++.... ...|.+... ..|+-| .+.|++++|..-|-++
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 778888888888888888876543 122333332 334433 4567787776544444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 93.7 bits (231), Expect = 2e-20
Identities = 34/237 (14%), Positives = 71/237 (29%), Gaps = 4/237 (1%)
Query: 132 NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLD---QMGRIGCKP 188
K + + +L A +L +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAME-L 247
+ YN ++ G G +E +L VK+ GL PD+ +Y A + + + +E
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 248 LNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK 307
L + + G+ + L + + + LP ++ S LL +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 308 WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK 364
+ + ++++ L +C+ S E+ L + K K
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKT 340
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 3e-11
Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 8/229 (3%)
Query: 34 AASLSTAESLDLKENPRSLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLM 93
+ ++ ++ P S ++ ++ +P K +D+ + + +S L+
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 94 ALV-------MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCM 146
A L + ++ ++ + + F E V+ +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 147 FDNGYHPNVTTFTILVNSLCKSGRLKEALE-VLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205
D G P++ ++ + + + + +E L+QM + G K LL
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 206 VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254
++ +++ P + ++ +L
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 2e-07
Identities = 20/227 (8%), Positives = 59/227 (25%), Gaps = 9/227 (3%)
Query: 241 SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYST 300
A L + + +P L + + + +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 301 LLNGLLKWGKIRPAVSI---FKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQV 357
L ++ A + + + M N+++ G + ++ V
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-----FKELVYV 187
Query: 358 FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG 417
+ D +Y ++ +G+ + + + + F V+ +
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 418 EGKIDKALLLLFLMYEHAKI-PSRTSYDMLITKLDQLEKSYDACALY 463
+ KA+ + + P + L+ + + L+
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 41.0 bits (94), Expect = 8e-04
Identities = 20/196 (10%), Positives = 57/196 (29%), Gaps = 9/196 (4%)
Query: 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLC 341
L ++ P + + LL + + + + ++ + + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 342 MKSWEEKDLLEDAYQV---FEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398
D L A+ + +K + Y V+ + E + L +
Sbjct: 139 -----LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 399 MGHIPRTITFNNVIQALCGEGKIDKALL-LLFLMYEHAKIPSRTSYDMLITKLDQLEKSY 457
G P +++ +Q + + + + L M + +L+++ D+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 458 DACALYGAALKQGVIP 473
+ +P
Sbjct: 254 AVHKVKPTFSLPPQLP 269
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 2e-11
Identities = 79/554 (14%), Positives = 140/554 (25%), Gaps = 182/554 (32%)
Query: 13 TNTNRRNHNKIPQFNKLV-VFAAASLSTAESLDLKENPRSLQAQRFVDRIKASP-LKERI 70
T + Q+ ++ VF A + + D+++ P+S+ ++ +D I S
Sbjct: 9 FETGEHQY----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 71 D-IFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-SWTF----- 123
+F +L++QE V+ F E L N +
Sbjct: 65 LRLFW---------------------TLLSKQEEMVQKFVEEV---LRINYKFLMSPIKT 100
Query: 124 -----SIMIRCY-------CNKNDFFEARKV---------IDCMFDNGYHPNVTTF---- 158
S+M R Y N N F V + + NV
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 159 ---TILVNSLCKS----------------GRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199
T + +C S VL+ + ++ +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDH 219
Query: 200 LC-YVGRVEEAYEMLMNVKNDGLKP-------DVYTYTAVMDGF---CKV---GRSNEAM 245
R+ L + +V + F CK+ R +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVT 278
Query: 246 ELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL--KLMKKRNCLPDKISYSTLLN 303
+ L+ A ++ + + TP + LL L + LP ++
Sbjct: 279 DFLSAATTTHIS--LDHHSMTL-------TPDEVKSLLLKYLDCRPQDLPREVL------ 323
Query: 304 GLLKWGKIRP-AVSIFKEMVR--------------------------------------- 323
P +SI E +R
Sbjct: 324 ------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 324 FG-FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV---TDPGTYGIVIRT 379
F + LL + W + D V K+ K V T I
Sbjct: 378 LSVFPPSAHIPTILLSLI----WFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKAL---LLLFLMYEHAK 436
L + K E LH +I + N+ + + I L + + H K
Sbjct: 433 L-ELKVKLENEYALHRSI--------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-HLK 482
Query: 437 IPSRTSYDMLITKL 450
L +
Sbjct: 483 NIEHPERMTLFRMV 496
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 40/250 (16%)
Query: 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCM 146
L + + +A +GL P + +
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNSGGKQALETVQRL---LPV- 298
Query: 147 FDN--GYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCY 202
G P V ++ L VL Q G P + G
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASHDGGKQA 356
Query: 203 VGRVEEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVV 261
+ V+ +L GL P+ V + G + + +L +A +TP V
Sbjct: 357 LETVQRLLPVLCQAH--GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPEQV 412
Query: 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD-----KIS------YSTLLNGLLKWGK 310
+ + G L + LP ++ ++ G
Sbjct: 413 --VAIAS---------HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461
Query: 311 IRPAVSIFKE 320
I +S
Sbjct: 462 IVAQLSRPDP 471
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 22/174 (12%)
Query: 94 ALVMLNEQETAVKFFSEASSYGLAPN-SWTFSIMIRCYCNKNDFFEA----RKVIDCMFD 148
L + + +A +GL P + +
Sbjct: 217 GKQALETVQRLLPVLCQA--HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH----- 269
Query: 149 NGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRV 206
G P V ++ L VL Q G P + G + V
Sbjct: 270 -GLTPQQVVAIASNSGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNGGGKQALETV 326
Query: 207 EEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN 259
+ +L GL P V + G + + +L +A +TP
Sbjct: 327 QRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPE 376
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 11/167 (6%)
Query: 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI-RCYCNKNDFFEARKVIDCMFDN 149
L + ++ V S + + TF +M Y + A + +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH----- 125
Query: 150 GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCK-PNIQTYNCLLKGLCYVGRVEE 208
++ + V L K RL A + L +M Q + ++++
Sbjct: 126 -QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 209 AYEMLMNV-KNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER 254
AY + + + A GR A +L EA+++
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAAC--HMAQGRWEAAEGVLQEALDK 229
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 21/187 (11%), Positives = 47/187 (25%), Gaps = 28/187 (14%)
Query: 96 VMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV 155
+ + F + S ++ ++ I I + P
Sbjct: 56 TLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY----------------PVT 99
Query: 156 TTFTILVN---SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY--VGRVEEAY 210
+ I + G +A+E L+ G + + +K + Y R +
Sbjct: 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVA----WMKAVVYGAAERWTDVI 155
Query: 211 EMLMNVKNDGLKPDVYTYTAVMDGFC--KVGRSNEAMELLNEAIERGVTPNVVTFNTLFN 268
+ + + + V G + EA L EA + +
Sbjct: 156 DQVKSAGKWPD-KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYL 214
Query: 269 GYCKEGT 275
+
Sbjct: 215 AMARRSQ 221
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 6e-04
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN-IQTYNCLLKGLCYVGRVEEAYEM 212
V ++ L VL Q G P+ + + G + V+ +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQA--HGLPPDQVVAIASNIGGKQALETVQRLLPV 282
Query: 213 LMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN-VVTFNTLFNGY 270
L GL PD V + G + + +L +A +TP+ VV + G
Sbjct: 283 LCQAH--GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASHDGGK 338
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.85 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.83 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.66 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.63 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.49 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.45 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.43 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.2 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.79 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.34 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.0 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.61 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.53 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.34 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.28 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.22 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.54 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.83 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.67 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.95 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.89 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.67 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.64 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.29 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.02 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 89.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.0 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.76 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.72 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.81 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.87 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.28 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.9 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 83.38 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.36 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.03 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.66 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=289.71 Aligned_cols=396 Identities=11% Similarity=-0.000 Sum_probs=323.1
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
.++.+++++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|
T Consensus 94 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 169 (597)
T 2xpi_A 94 ALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGA 169 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHH
Confidence 45678899999999999854 457788899999999999999999999988643 67888999999999999999999
Q ss_pred HHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC------------------
Q 011714 140 RKVIDCMFDN---------------GYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC------------------ 186 (479)
Q Consensus 140 ~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------ 186 (479)
.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHH
T ss_pred HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccch
Confidence 9999853221 2234588999999999999999999999998865431
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 187 ----------------------------------------------------KPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 187 ----------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
+++..+|+.++.+|.+.|++++|.++|+
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1566677777777788888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPD 294 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 294 (479)
++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+
T Consensus 330 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 406 (597)
T 2xpi_A 330 KILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQF 406 (597)
T ss_dssp HHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCC
Confidence 77765432 56677777778888888888888887777653 3467788888899999999999999999887753 235
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHH
Q 011714 295 KISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYG 374 (479)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (479)
..+|..++.++.+.|++++|.++|+++.+.+. .+..++..+...+. +.|++++|.++|+++.+..+. +..+|+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 479 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHM-----QLGNILLANEYLQSSYALFQY-DPLLLN 479 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCCC-CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 77889999999999999999999999887643 35667777777775 679999999999998876554 778899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCCCc--hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 375 IVIRTLGKGKKTDEALIHLHHAIEM----GHIPR--TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+.+++++.+.+ +.+..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 9999999999999999999998876 55777 6789999999999999999999999998876 557889999999
Q ss_pred HHhccCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+|.+.|++++|.+.++++++..
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998853
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=276.11 Aligned_cols=375 Identities=10% Similarity=-0.016 Sum_probs=306.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 82 NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
.+++..|+.++..+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 357899999999999999999999999999854 678899999999999999999999999998653 6789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRI---------------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL----- 221 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 221 (479)
+.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999953321 2344688999999999999999999999999876432
Q ss_pred -----------------------------------------------------------------CCCHHHHHHHHHHHH
Q 011714 222 -----------------------------------------------------------------KPDVYTYTAVMDGFC 236 (479)
Q Consensus 222 -----------------------------------------------------------------~~~~~~~~~li~~~~ 236 (479)
+++..+++.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 145666777777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 788888888888777765433 66677777888888888888888887776543 3467788888888889999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 011714 317 IFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHA 396 (479)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (479)
+|+++.+.. +.+...+..+...+. +.|++++|.++|+++....+. +..+|..++.+|.+.|++++|.++|+++
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFA-----IEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998887653 235667777777776 678899999999888876543 6778888899999999999999999988
Q ss_pred HHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 397 IEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEH----AKIPS--RTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 397 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.. +.+..+|..++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 8763 336788888999999999999999999988875 44566 6788899999999999999999999988765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-28 Score=227.62 Aligned_cols=381 Identities=12% Similarity=0.064 Sum_probs=312.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
.....|++++|+..++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 345678999999999888776544 67778888888899999999999999888764 6678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|...|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456788999999999999999999999988764 44566778888889999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHH
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISY 298 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 298 (479)
... .+..+|..+...+...|++++|...|+++++.... +...|..+...+...|++++|+..+++...... .+..++
T Consensus 164 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 164 TQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 642 35788899999999999999999999999886533 677888899999999999999999998877542 257788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIR 378 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 378 (479)
..+..++...|++++|...++++.+.... +...+..+...+. ..|++++|...|+++.+..+. +..++..++.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 313 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK-----EKGSVAEAEDCYNTALRLCPT-HADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHH
Confidence 88999999999999999999998876422 4556666666665 679999999999998877544 6788889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 011714 379 TLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEK 455 (479)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (479)
.+...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..++++.+.. +.+...|..+...+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999999987752 3356788889999999999999999999998764 4466778888877766653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=254.86 Aligned_cols=205 Identities=16% Similarity=0.231 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------hhh
Q 011714 69 RIDIFDSIKKDGTNWSV-SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND---------FFE 138 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 138 (479)
+..+.+.+.+.+...++ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455666666655444 45888999999999999999999999999999999999999999987665 677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=254.56 Aligned_cols=207 Identities=17% Similarity=0.215 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 011714 102 ETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR---------L 171 (479)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 171 (479)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765554 46888999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 252 IERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.|..|+..||+.++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-28 Score=227.18 Aligned_cols=364 Identities=16% Similarity=0.096 Sum_probs=317.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566788999999999999988764 5567778888899999999999999999998764 5688999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998864 456778999999999999999999999999886432 466778888999999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 251 AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
+.+... .+..+|..+...+...|++++|+..++++.+.+. .+...+..+...+...|++++|...+.+..+... .+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 988743 3678899999999999999999999999988653 3577899999999999999999999999987642 245
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
..+..+...+. ..|++++|...|+++...++. +..+|..++.++.+.|++++|++.++++.+.. +.+..++..
T Consensus 238 ~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 310 (388)
T 1w3b_A 238 VVHGNLACVYY-----EQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 66666666665 679999999999999987654 67789999999999999999999999999863 457889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+...+...|++++|+..++++.+.. +.+..++..++.+|.+.|++++|.+.++++++.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999875 557889999999999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-24 Score=209.24 Aligned_cols=398 Identities=12% Similarity=-0.007 Sum_probs=305.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
...+..|++++|+..|+.+.+.+ |+...|..+..++...|++++|+..|+++.+.+ +.+..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 34567899999999999998765 588899999999999999999999999998765 566788999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----------------------------------
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMG----------------------------------- 182 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----------------------------------- 182 (479)
+|...|+.+...+ +++......++..+........+.+.+..+.
T Consensus 91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999998875 3344444444444443322222222221110
Q ss_pred hCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHc
Q 011714 183 RIGC---------KPNIQTYNCLLKGLCY---VGRVEEAYEMLMNVKN-----DGL--------KPDVYTYTAVMDGFCK 237 (479)
Q Consensus 183 ~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~ 237 (479)
.... +.+...+......+.. .|++++|..+++++.+ ... +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 0000 1124445555555554 8999999999999887 311 1235677888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.|++++|...++++.+.... ...+..+..++...|++++|+..++++..... .+...+..+...+...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999886433 77888899999999999999999999987643 3667888899999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 318 FKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
++++.+.... +...+..+...+. ..|++++|...++.+....+. +...+..++..+...|++++|...++++.
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAY-----RENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTT-----TTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhChh-hHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999876433 3445555555554 679999999999998876544 56788899999999999999999999987
Q ss_pred HcCCC-Cc----hHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 398 EMGHI-PR----TITFNNVIQALCG---EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 398 ~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+.... ++ ...+..+..++.. .|++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 64221 11 3378888999999 999999999999998875 456788889999999999999999999999885
Q ss_pred C
Q 011714 470 G 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-24 Score=201.09 Aligned_cols=363 Identities=13% Similarity=0.049 Sum_probs=273.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.++..+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 377889999999999999999999999998764 5678899999999999999999999999998875 45788899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNI---QTYNCL------------LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
.+|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998764 3333 555555 444888999999999999988764 337788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH------
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL------ 301 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 301 (479)
+..++.+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|+..++++..... .+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 8899999999999999999999988763 33678899999999999999999999999886532 234444444
Q ss_pred ------HHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhh
Q 011714 302 ------LNGLLKWGKIRPAVSIFKEMVRFGFEVD---ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGT 372 (479)
Q Consensus 302 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 372 (479)
...+...|++++|...++++.+...... ...+..+...+. +.|++++|...++.+....+. +...
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~p~-~~~~ 331 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS-----KDEKPVEAIRVCSEVLQMEPD-NVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 7788888999999999998887532210 234455555554 668899999999888776443 6678
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHH------------HHcCC-----CHHHHHHHHHH-HHh
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR-TITFNNVIQA------------LCGEG-----KIDKALLLLFL-MYE 433 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~ 433 (479)
|..++.+|...|++++|...++++.+. .|+ ...+..+..+ |...| +.+++.+.+++ ..+
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 888889999999999999999988874 343 4455555422 33334 55667777776 333
Q ss_pred CCC--CCC-------HhhHHHHHHHHhccCCHhHH
Q 011714 434 HAK--IPS-------RTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 434 ~~~--~~~-------~~~~~~l~~~~~~~g~~~~A 459 (479)
... .++ ...+..+..+|...|+.+.+
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 321 122 12556666666666665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-23 Score=200.30 Aligned_cols=364 Identities=13% Similarity=-0.041 Sum_probs=283.4
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFE 138 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 138 (479)
..+..|+.++|+..++.+.+.++. +...|..+..++...|++++|+..|+++.+.+ +++......++..+........
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 48 CYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHH
Confidence 345789999999999999887654 78899999999999999999999999999876 4455555555544443322222
Q ss_pred HHHHHHHHH-----------------------------------hCCC---------CCCHHHHHHHHHHHHh---cCCh
Q 011714 139 ARKVIDCMF-----------------------------------DNGY---------HPNVTTFTILVNSLCK---SGRL 171 (479)
Q Consensus 139 a~~~~~~~~-----------------------------------~~~~---------~~~~~~~~~li~~~~~---~g~~ 171 (479)
+.+.+..+. .... +.+...+..+...+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 222221110 0000 1124455555555554 8999
Q ss_pred HHHHHHHHHHhh-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 172 KEALEVLDQMGR-----IGC--------KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 172 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
++|...++++.+ ... +.+..++..+...+...|++++|...++++.+.... ...+..+..++...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999999987 311 224567888999999999999999999999886543 88899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 011714 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
|++++|...++.+.+... .+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999988743 36778999999999999999999999999887533 5778889999999999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHhc---CCCHHHHH
Q 011714 319 KEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-D----PGTYGIVIRTLGK---GKKTDEAL 390 (479)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~ 390 (479)
+++.+.... +...+..+...+. ..|++++|...++.+....+.. + ...+..++.++.. .|++++|.
T Consensus 362 ~~~~~~~~~-~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 362 SEAKRKFPE-APEVPNFFAEILT-----DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHSTT-CSHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHccc-CHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 999876432 3455555666664 6799999999999887643321 1 2378999999999 99999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 391 IHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 391 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999998864 3357788899999999999999999999999875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-23 Score=194.81 Aligned_cols=355 Identities=15% Similarity=0.085 Sum_probs=280.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 104 AVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 104 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
+...+.++.... +.+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|.+.|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455544433 5678889999999999999999999999998764 55789999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHccCCHHHHHHHH
Q 011714 184 IGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV---YTYTAV------------MDGFCKVGRSNEAMELL 248 (479)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~ 248 (479)
.+ +.+..++..+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 557889999999999999999999999999976422 33 555555 44488999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 249 NEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
+++.+... .+...+..+..+|.+.|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+....
T Consensus 167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 243 (450)
T 2y4t_A 167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 243 (450)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988643 378889999999999999999999999998763 346889999999999999999999999999875322
Q ss_pred CHHHHHHH------------HHHHhcccchhhccHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCHHHHHHH
Q 011714 329 DERMMNSL------------LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD----PGTYGIVIRTLGKGKKTDEALIH 392 (479)
Q Consensus 329 ~~~~~~~l------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 392 (479)
+...+..+ ...+. ..|++++|...|+.+....+. + ...|..++.++.+.|++++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELI-----RDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22322222 34443 679999999999999876543 3 34788899999999999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH------------HhccC-----C
Q 011714 393 LHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK------------LDQLE-----K 455 (479)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~ 455 (479)
++++.+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+...+..+..+ |...| +
T Consensus 318 ~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 99998753 3367899999999999999999999999999875 3456677777633 44445 5
Q ss_pred HhHHHHHHHH-HHhCCCCCCC
Q 011714 456 SYDACALYGA-ALKQGVIPQR 475 (479)
Q Consensus 456 ~~~A~~~~~~-~~~~~~~p~~ 475 (479)
.+++.+.|++ +++ ..||.
T Consensus 396 ~~~~~~~y~~~~l~--~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQ--WHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHH--SCGGG
T ss_pred HHHHHHHHHHHHHH--hCCCC
Confidence 6777888886 444 34553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-22 Score=192.79 Aligned_cols=394 Identities=13% Similarity=0.054 Sum_probs=293.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFF 137 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (479)
...++.|++++|+..|+.+.+.++. ++..|..+..++...|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 3456789999999999999887654 78999999999999999999999999998875 667889999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHH-------------------
Q 011714 138 EARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG------CKPNIQT------------------- 192 (479)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~------------------- 192 (479)
+|...|+.+ .. .|+ .....+..+...+...+|...++++.... ..|+...
T Consensus 111 ~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 999999743 22 222 22223444555566677888888775431 1122211
Q ss_pred -----------HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCHHHHHH
Q 011714 193 -----------YNCLLKGLCY--------VGRVEEAYEMLMNVKNDGLKPD-------VYTYTAVMDGFCKVGRSNEAME 246 (479)
Q Consensus 193 -----------~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~ 246 (479)
...+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|..
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1222222211 24788899999988875432 2 2346667778888999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011714 247 LLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGF 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (479)
.++.+.+.. |+...+..+...+...|++++|+..++++.+... .+..++..+...+...|++++|...++++.+...
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 999998863 4577888899999999999999999999887643 3677888999999999999999999999887643
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI---- 402 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---- 402 (479)
. +...+..+...+. ..|++++|...++.+....+. +...+..+...+...|++++|.+.++++.+....
T Consensus 342 ~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 342 E-NVYPYIQLACLLY-----KQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp T-CSHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred C-CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 3 3345555555554 679999999999998877554 5678889999999999999999999988764211
Q ss_pred -CchHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 403 -PRTITFNNVIQALCGE----------GKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 403 -p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.....+.....++... |++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.|+++++..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1112234445666677 99999999999998875 4577889999999999999999999999998854
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-20 Score=180.84 Aligned_cols=358 Identities=15% Similarity=0.029 Sum_probs=268.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
....|+.++|+..++.+.+.++. +...+..+...+...|++++|+..|+. ... .|+. ....+..+...+....|
T Consensus 69 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a 142 (537)
T 3fp2_A 69 YISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQA 142 (537)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHH
Confidence 45789999999999999887654 788999999999999999999999973 322 2321 12223445555566778
Q ss_pred HHHHHHHHhCC------CCCCHH------------------------------HHHHHHHHHHh--------cCChHHHH
Q 011714 140 RKVIDCMFDNG------YHPNVT------------------------------TFTILVNSLCK--------SGRLKEAL 175 (479)
Q Consensus 140 ~~~~~~~~~~~------~~~~~~------------------------------~~~~li~~~~~--------~g~~~~a~ 175 (479)
...++.+.... ..|+.. ....+...+.. .|++++|.
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp HHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 88888875431 112211 22222222221 24789999
Q ss_pred HHHHHHhhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 011714 176 EVLDQMGRIGCKPN-------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELL 248 (479)
Q Consensus 176 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 248 (479)
.+++++.+.. +.+ ..++..+...+...|++++|...+++..+. .|+...+..+...+...|++++|...+
T Consensus 223 ~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 223 DMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998764 223 335677778889999999999999999886 455888899999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 249 NEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
+++.+... .+..++..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+....
T Consensus 300 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 376 (537)
T 3fp2_A 300 QKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT- 376 (537)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988743 3678899999999999999999999999988643 25678889999999999999999999999876432
Q ss_pred CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHhcC----------CCHHHHHHHH
Q 011714 329 DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVT-----DPGTYGIVIRTLGKG----------KKTDEALIHL 393 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~A~~~~ 393 (479)
+...+..+...+. ..|++++|...|+.+....+.. ....+.....++... |++++|+..+
T Consensus 377 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 377 LPEVPTFFAEILT-----DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp CTHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 3445555655554 6799999999999887543211 112244455677777 9999999999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 394 HHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 394 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+++.+... .+...+..+..++...|++++|+..|+++.+..
T Consensus 452 ~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 452 TKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99998632 357789999999999999999999999999875
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-20 Score=168.58 Aligned_cols=334 Identities=14% Similarity=0.052 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667788888888888888888888887754 5567788888888888888888888888888763 346778888888
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCK---PNIQTYNCL------------LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
++...|++++|...+++..+.. + .+...+..+ ...+...|++++|++.++++.+... .+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence 8888888888888888887763 2 233444433 3444455555555555555444321 234444
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~------ 229 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK------ 229 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH------
Confidence 444555555555555555555544432 123444444444555555555555555444432211 111111000
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCC
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP----GTYGIVIRTLGKGK 384 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 384 (479)
.+. .......+...+. ..|++++|...++.+....+. +. ..+..+..++...|
T Consensus 230 -----------~~~------~~~~~~~~a~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 230 -----------QVK------KLNKLIESAEELI-----RDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp -----------HHH------HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTT
T ss_pred -----------HHH------HHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHcc
Confidence 000 0000001122232 557888888888877765543 33 23556778888889
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
++++|++.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 9999999999888753 2367788888888889999999999999988875 445666777776655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-19 Score=166.68 Aligned_cols=317 Identities=12% Similarity=0.051 Sum_probs=249.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+...+..+...+...|++++|...|+.+.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888899999999999999999998764 4578899999999999999999999999998764 447788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLK--PDVYTYTAV------------MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
.+...|++++|...+++..+.... .+...+..+ ...+...|++++|...++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 999999999999999999876320 134444444 5778888999999999988887643 3677888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccc
Q 011714 265 TLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKS 344 (479)
Q Consensus 265 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 344 (479)
.+..++...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..+.. |+.......
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~-------- 227 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAH-------- 227 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHH--------
Confidence 88888889999999999998888764 3367788888888888899999988888887653 222211111
Q ss_pred chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch----HHHHHHHHHHHcCCC
Q 011714 345 WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT----ITFNNVIQALCGEGK 420 (479)
Q Consensus 345 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 420 (479)
+..+. .......++..+...|++++|+..++++.+.... +. ..+..+..++...|+
T Consensus 228 -------------~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 228 -------------YKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp -------------HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 11111 1122334577888999999999999999886432 22 235567789999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 421 IDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+++|+..++++.+.. +.+...+..++.+|...|++++|.+.|+++++..
T Consensus 288 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 288 PVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999875 5578899999999999999999999999999854
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-17 Score=160.11 Aligned_cols=357 Identities=12% Similarity=0.011 Sum_probs=228.8
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCH
Q 011714 84 SVSDFNDLLMALVM----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNV 155 (479)
Q Consensus 84 ~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 155 (479)
++..+..+...+.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555666666666 677777777777776643 45566666777766 677777777777776654 55
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 011714 156 TTFTILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKNDGLKPDVYT 227 (479)
Q Consensus 156 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (479)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666666666666 667777777777776654 45566666666665 667777777777776653 5566
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 228 YTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 228 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|+.++++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666666 677777777777776653 44556666666665 667777777777776654 345555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHH
Q 011714 300 TLLNGLLK----WGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGI 375 (479)
Q Consensus 300 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 375 (479)
.+...+.. .++.++|..+|++..+.| +......+-..+........+++++|...|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 55555655 677777777777776543 2233333333332110011256777777777766653 3455666
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 376 VIRTLGKGK---KTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 376 l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+...|...| ++++|++++++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666555 6677777777776642 45566666666666 677777777777777654 4566666777
Q ss_pred HHhc----cCCHhHHHHHHHHHHhCC
Q 011714 449 KLDQ----LEKSYDACALYGAALKQG 470 (479)
Q Consensus 449 ~~~~----~g~~~~A~~~~~~~~~~~ 470 (479)
.|.. .++.++|...|+++++.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7766 677777777777777665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-19 Score=159.89 Aligned_cols=301 Identities=12% Similarity=-0.010 Sum_probs=174.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..+|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3444455555555666666666666666665543 3344455555555666666666666666665543 3345556666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 197 LKGLCYVG-RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 197 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
...+...| ++++|...+++..+... .+...+..+..++...|++++|...++++.+.... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 66666666 66666666666655432 23455666666666666666666666666654322 34445556666666777
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAY 355 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 355 (479)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... .+.
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~----- 228 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------------------IGN----- 228 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------------TSC-----
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh--------------------ccc-----
Confidence 777777776666553 224566666666667777777777666665542100 000
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 356 QVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
......+...+..+..++...|++++|+..++++.+... .+...+..+..++...|++++|...++++.+..
T Consensus 229 -------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 229 -------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp -------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred -------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000112334566666667777777777777776665432 245566666677777777777777777666654
Q ss_pred CCCCHhhHHHHHHHH-hccCCH
Q 011714 436 KIPSRTSYDMLITKL-DQLEKS 456 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~-~~~g~~ 456 (479)
+.+...+..+..++ ...|+.
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC-
T ss_pred -CCchHHHHHHHHHHHHHhCch
Confidence 33556666666666 344443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-16 Score=153.45 Aligned_cols=355 Identities=14% Similarity=0.038 Sum_probs=292.3
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cC
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVM----LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KN 134 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 134 (479)
.++.++|+..|+...+.| ++..+..|...+.. .+++++|++.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 577899999999888764 56788889999998 999999999999998865 66778888888988 88
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRV 206 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 206 (479)
++++|...|++..+.| +...+..|..+|.. .++.++|++.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999999875 67888888888887 789999999999998875 67888889999988 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhh
Q 011714 207 EEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMK 278 (479)
Q Consensus 207 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 278 (479)
++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998865 56777888888876 889999999999998864 55677778888887 899999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHH
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKW-----GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLED 353 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 353 (479)
|+.++++..+.| +...+..+...+... +++++|..++++..+.+. ......+-..+... ...++.++
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~--g~~~~~~~ 349 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRL--GSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC--CCcccHHH
Confidence 999999998875 566777888888877 899999999999998753 33444444444321 12348999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHH
Q 011714 354 AYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKAL 425 (479)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 425 (479)
|...|++..+.+ ++..+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .+++++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998763 56788899999988 899999999999999864 56778888888887 89999999
Q ss_pred HHHHHHHhCCCC-C-CHhhHHHHHHH
Q 011714 426 LLLFLMYEHAKI-P-SRTSYDMLITK 449 (479)
Q Consensus 426 ~~~~~~~~~~~~-~-~~~~~~~l~~~ 449 (479)
..|++..+.+.. | +......+...
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 999999988632 1 33444444433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-16 Score=154.67 Aligned_cols=402 Identities=9% Similarity=0.002 Sum_probs=291.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhc
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNK 133 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 133 (479)
..+......++.++|..+|+.+.+..+. +...|..++..+.+.|++++|..+|+++.+. .|+...|...+.. ....
T Consensus 17 ~~l~~~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~ 93 (530)
T 2ooe_A 17 SILIREAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETK 93 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHc
Confidence 3344445678999999999999987544 8889999999999999999999999999976 4688888877753 3456
Q ss_pred CChhhHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 134 NDFFEARK----VIDCMFDN-GYH-PNVTTFTILVNSLCK---------SGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 134 ~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++..+....+....|.....
T Consensus 94 ~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~ 173 (530)
T 2ooe_A 94 GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173 (530)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Confidence 78877766 67766542 433 356788888877655 6899999999999988321111234443322
Q ss_pred HH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHcc----CCH---
Q 011714 199 GL-------------CYVGRVEEAYEMLMNVK------NDG---LKPD--------VYTYTAVMDGFCKV----GRS--- 241 (479)
Q Consensus 199 ~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----~~~--- 241 (479)
.. .+.+++..|..++..+. +.. ++|+ ...|...+...... ++.
T Consensus 174 ~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~ 253 (530)
T 2ooe_A 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253 (530)
T ss_dssp HHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHH
T ss_pred HHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhH
Confidence 11 12355677777776532 111 2343 24555555443322 232
Q ss_pred -HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCChh-------hHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011714 242 -NEAMELLNEAIERGVTPNVVTFNTLFNGYCK-------EGTPM-------KGVGLLKLMKKRNCLPDKISYSTLLNGLL 306 (479)
Q Consensus 242 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (479)
+.+..+|++++... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.
T Consensus 254 ~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 254 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 47788999988763 3367788888888875 79887 89999999986323346788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCcC-H-HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhcC
Q 011714 307 KWGKIRPAVSIFKEMVRFGFEVD-E-RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT-LGKG 383 (479)
Q Consensus 307 ~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 383 (479)
+.|++++|..+|+++++. .|+ . ..+......+. +.|+++.|..+|++..+..+. +...|...+.. +...
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~-----~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR-----RAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 404 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH-----HhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHc
Confidence 999999999999999985 343 2 35555555543 679999999999999876433 33333332222 3468
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC--CHhhHHHHHHHHhccCCHhHHH
Q 011714 384 KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IP--SRTSYDMLITKLDQLEKSYDAC 460 (479)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~ 460 (479)
|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|..+|++...... .| ....|...+......|+.+.+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998753 23578899999999999999999999999998742 22 2347888888888899999999
Q ss_pred HHHHHHHhC
Q 011714 461 ALYGAALKQ 469 (479)
Q Consensus 461 ~~~~~~~~~ 469 (479)
.+++++++.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998774
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-18 Score=157.62 Aligned_cols=286 Identities=9% Similarity=-0.062 Sum_probs=207.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 356667788888888899999999999988764 5566677778888888999999999999888764 44678888888
Q ss_pred HHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 163 NSLCKSG-RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 163 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
..+...| ++++|.+.|++..+.. +.+..+|..+...+...|++++|...+++..+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 8888888 8999999999888764 445778888889999999999999999988876432 456677788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhcCChHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN--------CLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
++|...++++.+... .+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999998887643 367788888899999999999999988886531 12234567777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (479)
|...++++.+.... +...+..+...+. ..|++++|...|++..+..+. +...+..+..++
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHS-----LMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHH-----HHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHH-----HhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 77777777654321 2223333333332 345555555555554443322 334444444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-19 Score=164.80 Aligned_cols=282 Identities=15% Similarity=0.051 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555443 3344455555555555555555555555554432 124444555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVS 316 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 316 (479)
..|++++|...++++.+.... +...+..+... ... ..+ ...+. .+..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-----------~~~-~~~~~-~~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-----------AGL-GPSKR-ILGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------C-TTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----------hcc-cHHHH-HHHHHhhcccHHHHHH
Confidence 555555555555555443211 11111100000 000 000 00011 2233337788888888
Q ss_pred HHHHHHHcCCCc-CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHH
Q 011714 317 IFKEMVRFGFEV-DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHH 395 (479)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (479)
.++++.+..... +...+..+...+. ..|++++|...|+++....+. +...|..++.++...|++++|+..+++
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFN-----LSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887654321 3566666666665 668888898888888776544 567889999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----------CHhhHHHHHHHHhccCCHhHHHHHHHH
Q 011714 396 AIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP----------SRTSYDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 396 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+.+.. +.+...+..+..++...|++++|+..++++.+..... ...+|..++.+|...|++++|..++++
T Consensus 277 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 277 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88763 2357788899999999999999999999988753211 167899999999999999999998876
Q ss_pred HHh
Q 011714 466 ALK 468 (479)
Q Consensus 466 ~~~ 468 (479)
.++
T Consensus 356 ~l~ 358 (368)
T 1fch_A 356 DLS 358 (368)
T ss_dssp CHH
T ss_pred HHH
Confidence 543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-16 Score=155.21 Aligned_cols=384 Identities=10% Similarity=0.039 Sum_probs=276.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 73 FDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH 152 (479)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (479)
++...+.++. +...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.+.. .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 3444444433 8889999998 478999999999999999764 667889999999999999999999999999976 3
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 011714 153 PNVTTFTILVNSL-CKSGRLKEALE----VLDQMGR-IGCK-PNIQTYNCLLKGLCY---------VGRVEEAYEMLMNV 216 (479)
Q Consensus 153 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 216 (479)
|+...|..++... ...|+.++|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 35677776665 7776654 2433 356788888876655 68899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHHH------HCC---CCCC--------HhhHHHH
Q 011714 217 KNDGLKPDVYTYTAVMDGF-------------CKVGRSNEAMELLNEAI------ERG---VTPN--------VVTFNTL 266 (479)
Q Consensus 217 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 266 (479)
.+.........|....... ...+++..|..++.+.. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111123443332211 13456677777776532 211 2333 2455555
Q ss_pred HHHHHhc----CCh----hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHc
Q 011714 267 FNGYCKE----GTP----MKGVGLLKLMKKRNCLPDKISYSTLLNGLLK-------WGKIR-------PAVSIFKEMVRF 324 (479)
Q Consensus 267 ~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 324 (479)
+...... ++. .+++.+|++..... +.+...|..++..+.. .|+++ +|..++++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5443332 232 36778898887753 3367788888877765 79987 899999998862
Q ss_pred CCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 011714 325 GFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDP-GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP 403 (479)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 403 (479)
-.+.+...+..+...+. ..|++++|..+|+++....+. +. ..|..++..+.+.|++++|.++|+++.+... .
T Consensus 316 ~~p~~~~l~~~~~~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~ 388 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEE-----SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 388 (530)
T ss_dssp TCSSCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-C
T ss_pred hCcccHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence 12234556666666554 679999999999999986443 33 5899999999999999999999999987532 2
Q ss_pred chHHHHHHHHH-HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 404 RTITFNNVIQA-LCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 404 ~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
+...|...... +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++++.+
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 33334333322 336899999999999999875 4578899999999999999999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=159.19 Aligned_cols=307 Identities=12% Similarity=-0.008 Sum_probs=197.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhCCC-CC--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011714 94 ALVMLNEQETAVK-FFSEASSYGL-AP--NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG 169 (479)
Q Consensus 94 ~~~~~~~~~~A~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (479)
++...|++++|+. .|++..+... .| +...+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 5566789999998 8887664421 11 35678899999999999999999999999875 557889999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011714 170 RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLN 249 (479)
Q Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 249 (479)
++++|.+.++++.+.. +.+..++..+...+...|++++|...++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 9999999999998875 567889999999999999999999999999986432 22222211000 00
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 250 EAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
. ..+ ...+..+...+ ..|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 000 00111111222 5566666666666665543211 35556666666666666666666666665542 12
Q ss_pred CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----
Q 011714 329 DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP----- 403 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----- 403 (479)
+...+..+...+. ..|++++|...|+++....+. +...+..+..++...|++++|...++++.+.....
T Consensus 250 ~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 250 DYLLWNKLGATLA-----NGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp CHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 3344444444443 456677777777666655433 55677778888888888888888888777542111
Q ss_pred -----chHHHHHHHHHHHcCCCHHHHHHHHHH
Q 011714 404 -----RTITFNNVIQALCGEGKIDKALLLLFL 430 (479)
Q Consensus 404 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 430 (479)
...+|..+..++...|++++|..++++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156788888888888888888887764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-19 Score=158.45 Aligned_cols=283 Identities=12% Similarity=0.099 Sum_probs=138.3
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
+++++|.++++.+. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+..+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 66899999999883 345899999999999999999999965 357779999999999999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP 223 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 223 (479)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 877764 4568889999999999999999998884 367789999999999999999999999977
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 37899999999999999999999988 27899999999999999999996554432 224444557889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC------CChhhHHHHH
Q 011714 304 GLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV------TDPGTYGIVI 377 (479)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~ 377 (479)
.|.+.|.+++|..+++..+... +-....+..+--.+++. +.+++.+.++.|..-. +.. -+...|..+.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky---~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF---KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT---CHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 45567777777777654 5666777776665221 111 1457899999
Q ss_pred HHHhcCCCHHHHHHHH
Q 011714 378 RTLGKGKKTDEALIHL 393 (479)
Q Consensus 378 ~~~~~~g~~~~A~~~~ 393 (479)
-.|...++++.|....
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 9999999999998743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-17 Score=154.86 Aligned_cols=364 Identities=13% Similarity=-0.009 Sum_probs=213.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---
Q 011714 81 TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY--------GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN--- 149 (479)
Q Consensus 81 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 149 (479)
....+..||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445778999999999999999999999987532 11334678999999999999999999999887642
Q ss_pred --C--CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 011714 150 --G--YHPNVTTFTILVNSLCKS--GRLKEALEVLDQMGRIGCKPNIQTYNCLLKG---LCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 150 --~--~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 220 (479)
+ ......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 112356666666555554 56899999999988764 3355555555554 345677788999998887754
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 011714 221 LKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKI 296 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 296 (479)
. .+..++..+...+.. .+++++|.+++++...... .+...+..+...|...|++++|+..+++..+... -+..
T Consensus 206 p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 282 (472)
T 4g1t_A 206 P-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAY 282 (472)
T ss_dssp S-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred C-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHH
Confidence 2 256666665555444 4678899999998887643 3677888999999999999999999999887642 2455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011714 297 SYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIV 376 (479)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 376 (479)
++..+..+|...+.... ... ...... .. ...+..+.|...++.....++. +...+..+
T Consensus 283 ~~~~lg~~y~~~~~~~~---------~~~-~~~~~~----~~-------~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 340 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVM---------NLR-ENGMYG----KR-------KLLELIGHAVAHLKKADEANDN-LFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HC-------C----HH-------HHHHHHHHHHHHHHHHHHHCTT-TCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhh---------hHH-HHHHHH----HH-------HHHhhHHHHHHHHHHHhhcCCc-hhhhhhhH
Confidence 66666555432211000 000 000000 00 0112334444445444443322 33444555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCchH--HHHHHHH-HHHcCCCHHHHHHHHHHHHh--------------------
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHIPRTI--TFNNVIQ-ALCGEGKIDKALLLLFLMYE-------------------- 433 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~-------------------- 433 (479)
...+...|++++|++.|+++++....+... .+..+.. .....|++++|+..+++..+
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 555555555555555555554432221110 1111111 12244555555555544443
Q ss_pred ----CCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 434 ----HAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 434 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
.+ +.+..+|..++.+|...|++++|++.|+++++.|-
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 32 45678899999999999999999999999999754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=159.67 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC 271 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (479)
.+..+...+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|+..|+++.+... .+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 355555555666666666666666555432 2455556666666666666666666666555432 24555666666666
Q ss_pred hcCChhhHHHHHHHHHhCCCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHh
Q 011714 272 KEGTPMKGVGLLKLMKKRNCL---------PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDERMMNSLLRGLC 341 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 341 (479)
..|++++|+..++++.+.... .....+..+...+...|++++|...++++.+.... ++...+..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666665543210 01223344567778888888888888888776432 14566666666664
Q ss_pred cccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCH
Q 011714 342 MKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKI 421 (479)
Q Consensus 342 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 421 (479)
..|++++|...|+++....+. +..+|..++.++...|++++|+..++++.+.. +.+..++..+..+|...|++
T Consensus 225 -----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 225 -----LSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp -----HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred -----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 668889999998888876554 67789999999999999999999999998863 23577889999999999999
Q ss_pred HHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 422 DKALLLLFLMYEHAKI-----------PSRTSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 422 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
++|+..++++.+.... .+...|..+..++...|+.+.+..+.++.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999998875311 13678999999999999999988887653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-18 Score=154.63 Aligned_cols=236 Identities=14% Similarity=0.048 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999988765 5678889999999999999999999999988764 44688899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPN-----------IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PDVYTYTA 230 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 230 (479)
.+|...|++++|.+.++++.+.. |+ ...+..+...+...|++++|+.+++++.+.... ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999887653 22 222334577888888888999888888876422 15778888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGK 310 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 310 (479)
+...+...|++++|...|+++.+... .+..+|..+..+|...|++++|+..++++.+.. +.+..++..+..++...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 88888888888899888888887643 367788888888888888888888888887753 2257778888888888888
Q ss_pred hHHHHHHHHHHHHc
Q 011714 311 IRPAVSIFKEMVRF 324 (479)
Q Consensus 311 ~~~a~~~~~~~~~~ 324 (479)
+++|...++++.+.
T Consensus 297 ~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 297 YREAVSNFLTALSL 310 (365)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-16 Score=141.91 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=209.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 011714 57 FVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF 136 (479)
Q Consensus 57 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (479)
+-+.+-.|+...|+..++.+....+.........+.+++...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345667899999999988765443332234556678999999999999987654 2 367788899999999999999
Q ss_pred hhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 137 FEARKVIDCMFDNGY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 137 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
++|.+.++++...+. +-+...+..+..++...|++++|++.+++ +.+..++..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988764 44677788888999999999999999987 46888999999999999999999999999
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 011714 216 VKNDGLKPDVYT---YTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL 292 (479)
Q Consensus 216 ~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 292 (479)
+.+.. |+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 98864 44321 1233455556699999999999999873 45888999999999999999999999999988653
Q ss_pred CCHhHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCcCHH
Q 011714 293 PDKISYSTLLNGLLKWGKIRP-AVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~ 331 (479)
-+..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 367889999999999999876 67899988875 44443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-17 Score=146.82 Aligned_cols=259 Identities=10% Similarity=0.010 Sum_probs=177.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
........++.++|+.+|+.+.+..+. +...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 334455677888888888887766544 67777778888888888888888888877654 4567777788888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTIL--------------VN-SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 888888888887653 2233333333 22 3556677777777777777654 34667777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+..++...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHH
Confidence 77777777777777776653 22566777777777777777777777777766532 25666777777777777777777
Q ss_pred HHHHHHHhCCCCC-----------CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 281 GLLKLMKKRNCLP-----------DKISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 281 ~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
..++++....... +...+..+..++...|++++|..++++
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777776543211 355666777777777777777776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-17 Score=147.29 Aligned_cols=235 Identities=9% Similarity=-0.052 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45567778888889999999999999988764 5577888888899999999999999999988764 457788888899
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL--------------LK-GLCYVGRVEEAYEMLMNVKNDGLKPDVYTY 228 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (479)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+... .+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 9999999999999999888763 2222233222 22 25566677777777777766532 256667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW 308 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 308 (479)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777766532 245666677777777777777777777766543 22455666666667777
Q ss_pred CChHHHHHHHHHHHHc
Q 011714 309 GKIRPAVSIFKEMVRF 324 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~ 324 (479)
|++++|...++++.+.
T Consensus 254 g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM 269 (327)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777777666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-16 Score=139.80 Aligned_cols=272 Identities=13% Similarity=0.066 Sum_probs=195.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNI--QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344568888888887776543 3332 3445667888888888888876644 1355677778888888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKE 320 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (479)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765433 455666677888888888888888876 34677888888888888999999888888
Q ss_pred HHHcCCCcCHHHHH---HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 011714 321 MVRFGFEVDERMMN---SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAI 397 (479)
Q Consensus 321 ~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (479)
+.+.. |+..... ..+..+. ..|++++|..+|+++....+. +...++.+..++.+.|++++|...+++++
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~-----~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAA-----GGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHH-----CTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhC--cCcHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88763 4432111 1222221 448899999999999887554 77889999999999999999999999988
Q ss_pred HcCCCCchHHHHHHHHHHHcCCCHHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHH
Q 011714 398 EMGHIPRTITFNNVIQALCGEGKIDK-ALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACA 461 (479)
Q Consensus 398 ~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (479)
+... -+..++..++.++...|+.++ +.++++++.+.. +.++.+ .+...+.+.++++..
T Consensus 228 ~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 228 DKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence 7642 367788889989999999876 578999988875 223332 233444445555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-18 Score=152.03 Aligned_cols=282 Identities=14% Similarity=0.101 Sum_probs=133.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALE 176 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 176 (479)
+.|+.++|.++++++. . ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~----~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----E--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999983 2 349999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 011714 177 VLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGV 256 (479)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 256 (479)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 4567889999999999999999998884 367789999999999999999999999876
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 257 TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ .........+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47999999999999999999999988 27899999999999999999996655442 2333334566
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCC------chHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK--KTDEALIHLHHAIEMGHIP------RTITF 408 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p------~~~~~ 408 (479)
+..|. +.|.+++|..+++...... ......|+-+..+|++-+ +..+.++.|.. ..+++| +...|
T Consensus 214 v~~Ye-----k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 214 INYYQ-----DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHH-----HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred HHHHH-----HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 67774 7899999999999988765 335678888888888753 34445554432 112222 35678
Q ss_pred HHHHHHHHcCCCHHHHHHH
Q 011714 409 NNVIQALCGEGKIDKALLL 427 (479)
Q Consensus 409 ~~l~~~~~~~g~~~~a~~~ 427 (479)
..+...|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 8999999999999988764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=168.10 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASS---YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTI 160 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (479)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 011714 161 LVNSLCKSGRL-KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD------VYTYTAVMD 233 (479)
Q Consensus 161 li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 233 (479)
||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765444 344444444 2334443 455566777
Q ss_pred HHHccC
Q 011714 234 GFCKVG 239 (479)
Q Consensus 234 ~~~~~~ 239 (479)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=166.87 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFD---NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+|+++|.+||+.|++++|.++|++|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 445555555555555555555544332 24444555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 199 GLCYVGRV-EEAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 199 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55554442 344455555555455555555544443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-15 Score=141.53 Aligned_cols=354 Identities=10% Similarity=-0.065 Sum_probs=238.7
Q ss_pred HhcCChhhHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C-CCCHHhHHH
Q 011714 61 IKASPLKERIDIFDSIKKD--------GTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY-----G-L-APNSWTFSI 125 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~-~~~~~~~~~ 125 (479)
...|+.++|++.|+...+. ..+....+|+.+...|...|++++|+..+++..+. + . .....++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 3578999999999765421 12335678999999999999999999999987542 1 1 123456666
Q ss_pred HHHHHHhc--CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 126 MIRCYCNK--NDFFEARKVIDCMFDNGYHPNVTTFTILVNSL---CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 126 l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+..++... +++++|...|++..+.. |-+...+..+..++ ...++.++|++.+++..+.. +.+..++..+...+
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHH
Confidence 66555554 57999999999998764 33566666655553 45678889999999888764 44666676666555
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---
Q 011714 201 CY----VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--- 273 (479)
Q Consensus 201 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 273 (479)
.. .+++++|.+++++..... +.+...+..+...|...|++++|...++++.+.... +..++..+..+|...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~ 297 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQ 297 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH
Confidence 54 467789999999988764 336788899999999999999999999999886433 566777776665432
Q ss_pred ----------------CChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHH
Q 011714 274 ----------------GTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMNS 335 (479)
Q Consensus 274 ----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 335 (479)
+..+.|+..+++...... .+...+..+...+...|++++|...|++.++....+... .+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 235677778877766542 356678889999999999999999999998865443221 1111
Q ss_pred HHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 336 LLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 336 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
+..... ...|+.++|+..|++.....+. ..... +....+.+++++..... +.+..+|..+..+|
T Consensus 377 ~~~~~~----~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 377 YGNFQL----YQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQ 440 (472)
T ss_dssp HHHHHH----HTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHH
T ss_pred HHHHHH----HHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 111111 2568999999999998876443 21111 12334455666666543 34678899999999
Q ss_pred HcCCCHHHHHHHHHHHHhCC
Q 011714 416 CGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~ 435 (479)
...|++++|++.|++.++.+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHCC-------------
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-13 Score=139.65 Aligned_cols=323 Identities=12% Similarity=0.146 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYG--LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTIL 161 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (479)
++.--...+++|...|.+.+|+++++++...+ +.-+...-+.++.+.++. +..+..++.+.+... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 45555778888888999999999999887432 113445556666666655 445555555554321 1 2335
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 5666677777777777777531 1222222322 5566777777766442 456677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
++|++.|.+. .|...|..++.++.+.|++++|++++....+.. ++....+.++.+|.+.++++....+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 7777777543 256666777777777777777777777665543 22223334666777776666433332
Q ss_pred HHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 322 VRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
. .++...+..+-..+. ..|++++|...|... ..|..++.++.+.|++++|++.++++
T Consensus 1191 -~---~~n~ad~~~iGd~le-----~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCY-----DEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred -h---CCCHHHHHHHHHHHH-----hcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 1 223344444444443 557777777777764 24677777777777777777777655
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 402 IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2445666666666666666666665442 223455556666666667777777777666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-13 Score=137.82 Aligned_cols=340 Identities=15% Similarity=0.146 Sum_probs=255.2
Q ss_pred hcCChhhHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 62 KASPLKERIDIFDSIKKDGT--NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
..+.+.+|+++++.+...+. .-+...-+.++....+. +..+..++.++.... ....+...+...|.+++|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEA 1068 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHH
Confidence 67889999999999984321 13456667777777776 556666666555422 134477888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|+..|.+.
T Consensus 1069 f~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1069 FAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 99999863 13333344433 6788999999998763 5778999999999999999999999664
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
-|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++...++ + .++...|.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 377888899999999999999999998877754 33334446899999999888644432 2 24666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+...|...|++++|..+|..+ ..+..+...+. +.|+++.|.+.+++.. +..+|..+..+
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv-----kLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV-----HLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH-----HhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 8999999999999999999885 35677777776 6689999999998772 56789999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc--CCHh
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQL--EKSY 457 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 457 (479)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|..+..+|.+. ++.-
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999998876542 3356667788999999999999999998887665 44556676777666653 4555
Q ss_pred HHHHHHH
Q 011714 458 DACALYG 464 (479)
Q Consensus 458 ~A~~~~~ 464 (479)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 5555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=128.30 Aligned_cols=198 Identities=14% Similarity=0.082 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667777777777777777777777777654 5566777777777777777777777777777654 34566777777
Q ss_pred HHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 163 NSLCKS-----------GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 163 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
.++... |++++|+..+++..+.. +.+..++..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 77777777777666653 3345666666666677777777777777666655 456666666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..++...|++++|+..|+++++.... +...+..+...+.+.|++++|+..+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666677777777777666665322 4555666666666666666666666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-15 Score=129.42 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HhHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL--PD----KISYS 299 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 299 (479)
..+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|+..+++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555566665555555544 34555555555566666666666655555443111 11 35566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+...+...|++++|...++++.+.. |+.. .+ ...|++++|...++.+....+. +...+..++..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------IL-----TKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HH-----HHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HH-----HHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHH
Confidence 66666666677777776666666542 2321 11 1447777777777777765433 45667777778
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHH
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDA 459 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (479)
+...|++++|+..++++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888877653 2356677777778888888888888888877764 44567777788888888888888
Q ss_pred HHHHHHHHhC
Q 011714 460 CALYGAALKQ 469 (479)
Q Consensus 460 ~~~~~~~~~~ 469 (479)
...++++++.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-15 Score=129.00 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH--PN----VTT 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 157 (479)
....|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++...+.... ++ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678888889999999999999999988776 77888999999999999999999999988764211 12 578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
+..+..++...|++++|.+.+++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 888999999999999999999998876 3453 34566788899999999988763 2256778888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 011714 238 VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI 317 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 317 (479)
.|++++|...++++.+.... +...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999998886433 67788889999999999999999999988764 23577888889999999999999999
Q ss_pred HHHHHHc
Q 011714 318 FKEMVRF 324 (479)
Q Consensus 318 ~~~~~~~ 324 (479)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-15 Score=139.83 Aligned_cols=378 Identities=13% Similarity=0.053 Sum_probs=247.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 58 VDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQ---ETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 58 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
...++.+++++|+.+|+...+.|. +..+..|...+...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 445678899999999999887763 34455666777778888 8999999998853 6667777777565555
Q ss_pred -----ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011714 135 -----DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK---EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 135 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (479)
+.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 78899999999998763 337777788887765533 4555565555554 345666778888888855
Q ss_pred HHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc----CC
Q 011714 207 EEA----YEMLMNVKNDGLKPDVYTYTAVMDGFCKVG---RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE----GT 275 (479)
Q Consensus 207 ~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 275 (479)
+++ ..+++..... +...+..+...|...| +.++|++.|+...+.|.. +...+..+...|... ++
T Consensus 158 ~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCC
T ss_pred ccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCC
Confidence 444 4444444332 3337888888999999 999999999999998744 666567777777655 78
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHH
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNG-L--LKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLE 352 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 352 (479)
+++|+.+|++.. .| +...+..+... + ...+++++|..+|++..+.| +......+-..+. .+.....+++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999988 43 55666666665 3 46899999999999999876 3444444444443 1111223999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHH
Q 011714 353 DAYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKA 424 (479)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 424 (479)
+|...|++.. . .++..+..+...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999877 2 266778888888876 4499999999999988653 4456666666664 5689999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 425 LLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..+++...+.|. ++.......+......++..+|..+.++.++.
T Consensus 378 ~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 378 YVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999873 23332222233333445677788887776553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=125.88 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=144.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5667788888888888888999988888888764 4577888888888888888888888888888764 4567788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 011714 197 LKGLCYV-----------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNT 265 (479)
Q Consensus 197 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 265 (479)
..++... |++++|+..+++..+.... +...+..+..++...|++++|+..|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 8888888888888775432 56777778888888888888888888887766 47777788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+..+|...|++++|+..+++..+... .+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888777542 256677777777888888888887777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-13 Score=119.15 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=191.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNVTTFT 159 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (479)
++.++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888888999999999999999998873 356778888888998 999999999999998875 778888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 160 ILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 160 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
.+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999998 999999999999988875 77888888899988 999999999999998865 56677778
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 232 MDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 232 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999988864 56778888888888 899999999999988875 3667778888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcC
Q 011714 304 GLLK----WGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 304 ~~~~----~~~~~~a~~~~~~~~~~~ 325 (479)
.+.. .+++++|...+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 899999999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-14 Score=123.69 Aligned_cols=236 Identities=10% Similarity=0.010 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILV 162 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 162 (479)
...+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++...+.+..+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788888999999999999988764 4456688888889999999999999999888743111 133478888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
.++...|++++|++.|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888764 4466788889999999999999999998887763 335667777773444455999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HhHHHHHHHHHHhcCChH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT---PMKGVGLLKLMKKRN-CLPD------KISYSTLLNGLLKWGKIR 312 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~ 312 (479)
+|...|+++.+.... +...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998886432 46677778888888887 788888888876542 1122 246777888888899999
Q ss_pred HHHHHHHHHHHc
Q 011714 313 PAVSIFKEMVRF 324 (479)
Q Consensus 313 ~a~~~~~~~~~~ 324 (479)
+|.+.++++.+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=136.45 Aligned_cols=351 Identities=13% Similarity=0.009 Sum_probs=235.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF---FEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36777888999999999999998766 344556666777778888 8999999998853 6666777777565
Q ss_pred hcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 167 KSG-----RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE---EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 167 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
..+ +.++|++.|++..+.|. ++ .+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78899999999998773 33 6777777787766543 3555555555544 345566777778777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc----CCh
Q 011714 239 GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG---TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKW----GKI 311 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 311 (479)
+.++++......+.+.-...+...+..|...|...| +.++|+..|++..+.|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444333322111223447888999999999 999999999999998743 555556666666554 799
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-----CH
Q 011714 312 RPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK-----KT 386 (479)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 386 (479)
++|..+|++.. .| +......+-..+... ...+++++|...|++..+.+ +...+..+...|. .| ++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~--~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDF--PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHS--GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 99999999987 33 233333343332211 14689999999999998775 5677888888887 45 99
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHhH
Q 011714 387 DEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ----LEKSYD 458 (479)
Q Consensus 387 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 458 (479)
++|+++|++.. .-+...+..+...|.. ..++++|..+|++..+.| +......|...|.. ..+..+
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3356677777777766 449999999999999877 45566777777764 458999
Q ss_pred HHHHHHHHHhCCC
Q 011714 459 ACALYGAALKQGV 471 (479)
Q Consensus 459 A~~~~~~~~~~~~ 471 (479)
|..+|+.+.+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988874
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=124.45 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456667777778888888888888888887654 4567777888888888888888888888887653 34677777788
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888877654 4466777777788888888888888888777653 235667777777777888888
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
+|...++++.+... .+..++..+..+|...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888877776532 256667777777777777777777777776643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=120.19 Aligned_cols=201 Identities=10% Similarity=-0.036 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556667777777777777777777776553 4456667777777777777777777777776553 3356666777777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766522223 445566666666777777777777766665432 245566666666666677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
|...++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7766666665432 24555666666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-13 Score=116.63 Aligned_cols=228 Identities=11% Similarity=-0.055 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFN 264 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (479)
+..++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677778888888888888888888887732 45667777777877 888888888888887764 566777
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 011714 265 TLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLK----WGKIRPAVSIFKEMVRFGFEVDERMMNSL 336 (479)
Q Consensus 265 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (479)
.+...|.. .+++++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77778877 888888888888887765 56677777777777 778888888887777654 33333444
Q ss_pred HHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 011714 337 LRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGK----GKKTDEALIHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 337 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
-..+... ....+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+.
T Consensus 153 g~~~~~~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAG-RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHT-SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcC-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 3333310 001566777777777666543 34556666666666 667777777776666643 244555666
Q ss_pred HHHHc----CCCHHHHHHHHHHHHhCC
Q 011714 413 QALCG----EGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 413 ~~~~~----~g~~~~a~~~~~~~~~~~ 435 (479)
..|.. .+++++|+..+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 666777777776666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=115.99 Aligned_cols=202 Identities=10% Similarity=-0.061 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566666777777777777777777766543 3446666666677777777777777777666543 335566666666
Q ss_pred HHHhc-CChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 011714 164 SLCKS-GRLKEALEVLDQMGRIGCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS 241 (479)
Q Consensus 164 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 241 (479)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 77777777776666522122 245566666666666666666666666655422 2455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666665543212444555555555666666666666665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=118.10 Aligned_cols=202 Identities=13% Similarity=0.026 Sum_probs=173.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5677888889999999999999999998764 4578889999999999999999999999998765 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 200 LCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+...|++++|.++++++...+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733334 567788889999999999999999999988643 367788999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 279 GVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 279 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
|...++++.+.. +.+...+..+...+...|+.++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998764 3467778888889999999999999999988753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=128.17 Aligned_cols=245 Identities=14% Similarity=0.019 Sum_probs=150.2
Q ss_pred CChhhHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 64 SPLKERIDIFDSIKKDGT---NWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
++.++|+..++.+.+... +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 456777777777766432 1245667777777888888888888888777654 445677777777777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..++++.+.. +.+..++..+..++...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 8887777653 3356777777777777777777777777777653 333333334444456677777777776665542
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhH
Q 011714 221 LKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT---PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKIS 297 (479)
Q Consensus 221 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 297 (479)
+++...+ .++..+...++.++|...+..+.+.... .+...+..+...|...|++++|...+++..... |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2233333 3555566666667777777666543211 013556666666667777777777777666543 211
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 011714 298 YSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~ 318 (479)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 112233444555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-13 Score=126.21 Aligned_cols=234 Identities=10% Similarity=0.016 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND-FFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
+...|+.+...+...|++++|+..|+++++.. +.+..+|..+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678888889999999999999999998765 5568889999999999996 999999999999875 44788999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK-VGRS 241 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 241 (479)
.++...|++++|+..|+++.+.. +-+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 557889999999999999999999999999887543 78889999988888 5665
Q ss_pred HHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-----
Q 011714 242 NEA-----MELLNEAIERGVTPNVVTFNTLFNGYCKEG--TPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWG----- 309 (479)
Q Consensus 242 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 309 (479)
++| +..++++++.... +...|..+...+...| ++++|++.+.++ +. .+.+...+..+...+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888876433 6778888888888888 688999998887 33 3346778888888888764
Q ss_pred ----ChHHHHHHHHHH-HHc
Q 011714 310 ----KIRPAVSIFKEM-VRF 324 (479)
Q Consensus 310 ----~~~~a~~~~~~~-~~~ 324 (479)
..++|.++++++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 258899999888 553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-13 Score=114.81 Aligned_cols=204 Identities=14% Similarity=-0.014 Sum_probs=162.2
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL 197 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (479)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.+.+++..+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 346678888888899999999999999888764 4467788888888999999999999999888764 45677888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 198 KGLCYV-GRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 198 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 888999 99999999998888732233 356778888888889999999999988887643 257778888888888999
Q ss_pred hhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 276 PMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 276 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
+++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999988888877543135666777777788888888888888887754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-14 Score=122.68 Aligned_cols=247 Identities=13% Similarity=-0.006 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP--DVYTYTAVMDGF 235 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~ 235 (479)
+......+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..+++..+....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3334444455555555555555554432 2223344444455555555555555555544421111 122244444445
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
...|++++|...|+++.+.... +...+..+...|...|++++|+..+++..+.. +.+...+..+...+...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~------- 155 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN------- 155 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-------
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-------
Confidence 5555555555555544443211 33344444444444444444444444443331 11223333333122222
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC---HHHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKK---TDEALIH 392 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~ 392 (479)
+++++|...|+.+.+..+. +...+..+..++...|+ +++|...
T Consensus 156 ---------------------------------~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 156 ---------------------------------KEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 3445555555544443322 23444444455554454 5556665
Q ss_pred HHHHHHcC-CCCc------hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 393 LHHAIEMG-HIPR------TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 393 ~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
++++.+.. ..|+ ..+|..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 55555431 1122 1355566666666777777777777776654 3344444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-13 Score=123.68 Aligned_cols=253 Identities=12% Similarity=0.089 Sum_probs=185.5
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR-LKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
...|..+...+...|++++|++.++++++.. +-+..+|+.+..++...|+ +++|+..|++..+.. +-+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 5577788888888999999999999998764 4468888889999999996 999999999988875 457788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK-EGTPM 277 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 277 (479)
++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998886533 7888888888899999999999999999887544 77788888888888 56657
Q ss_pred hH-----HHHHHHHHhCCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccc---hh
Q 011714 278 KG-----VGLLKLMKKRNCLPDKISYSTLLNGLLKWG--KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSW---EE 347 (479)
Q Consensus 278 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 347 (479)
+| +..+++...... -+...|..+...+...| ++++|.+.+.++ +. ...+...+..+...+...+. ..
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477777776542 25667777777777777 578888888776 32 22344555555555542100 00
Q ss_pred hc-cHHHHHHHHHHH-HhCCCCCChhhHHHHHHHH
Q 011714 348 KD-LLEDAYQVFEKM-TKKVSVTDPGTYGIVIRTL 380 (479)
Q Consensus 348 ~~-~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 380 (479)
.+ .+++|..+|+++ .+.++. ....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 02 357788888877 554332 334555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-14 Score=122.12 Aligned_cols=248 Identities=16% Similarity=0.034 Sum_probs=191.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 011714 96 VMLNEQETAVKFFSEASSYGL---APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK 172 (479)
Q Consensus 96 ~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 172 (479)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345889999999999987632 1246788899999999999999999999999874 457899999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 173 EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+|.+.|++..+.. +.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999874 4467899999999999999999999999998853 443344445556677799999999998887
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 011714 253 ERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP---DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVD 329 (479)
Q Consensus 253 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (479)
... +++...+ .++..+...++.++|+..+++........ +...+..+...+...|++++|...++++.+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 753 2344444 47778888888999999999887653211 25778889999999999999999999998764 42
Q ss_pred HHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 330 ERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 330 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
..... ...+. ..|++++|...+
T Consensus 248 ~~~~~--~~~~~-----~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH--RYALL-----ELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH--HHHHH-----HHHHHHHC----
T ss_pred hHHHH--HHHHH-----HHHHHHhhHHHH
Confidence 21111 11222 457778777665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=117.77 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=160.6
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLL 197 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 197 (479)
.....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456677888889999999999999999998764 4578899999999999999999999999998775 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 198 KGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 198 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 33678899999999999999999999999988643 36778999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 278 KGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 278 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
+|+..++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999998764 2367789999999999999999999999998763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-10 Score=112.54 Aligned_cols=219 Identities=11% Similarity=-0.014 Sum_probs=156.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHH-HHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGV-GLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
+..+|++++.. .+-....|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|.++|+.++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666554 2235666777777777889989997 999998864 34466667778888889999999999999987
Q ss_pred HcCC---------CcC------------HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 011714 323 RFGF---------EVD------------ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLG 381 (479)
Q Consensus 323 ~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (479)
.... .|+ ..++...+... .+.|..+.|..+|....+..+......|...+..-.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e-----rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM-----KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 6310 131 11233333333 256889999999999987512223344544444444
Q ss_pred cC-CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHhH
Q 011714 382 KG-KKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDMLITKLDQLEKSYD 458 (479)
Q Consensus 382 ~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 458 (479)
+. ++.+.|.++|+..++. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44 4589999999999876 33356667788888888899999999999999875321 34678888888888999999
Q ss_pred HHHHHHHHHhCC
Q 011714 459 ACALYGAALKQG 470 (479)
Q Consensus 459 A~~~~~~~~~~~ 470 (479)
+..+.+++.+.-
T Consensus 560 ~~~v~~R~~~~~ 571 (679)
T 4e6h_A 560 VRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998854
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=129.75 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI----QTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KPDV 225 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~ 225 (479)
...+..+...+...|++++|+..|++..+.+ +.+. .++..+...|...|++++|...+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445556667778888888888888877763 2232 46777777788888888888888776542 11 1134
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIER----G-VTPNVVTFNTLFNGYCKEGT-----------------PMKGVGLL 283 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 283 (479)
.++..+...|...|++++|...++++.+. + ......++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 55667777777778888887777776553 1 11123355666666666676 66666666
Q ss_pred HHHHhC----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 284 KLMKKR----NC-LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 284 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
++..+. +. .....++..+...+...|++++|...+++..+..... ++
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~-------- 258 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--------------------GD-------- 258 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------TC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--------------------CC--------
Confidence 554331 10 0112344445555555555555555555544321000 00
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 359 EKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-----PRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
.......+..+..++...|++++|...++++.+.... ....++..+..++...|++++|..++++..+
T Consensus 259 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 259 -------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp -------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0000125666777777777777777777776643110 1134566677777777888888777777665
Q ss_pred CCC-----CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 434 HAK-----IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 434 ~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
... .....++..+..+|...|++++|.+.++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 311 111345667777777788888888887777653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-14 Score=130.43 Aligned_cols=301 Identities=14% Similarity=0.058 Sum_probs=159.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-C
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-N 189 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~ 189 (479)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34445555566666666666666666666542 112 234555666666666666666666654322 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCC--------------------HHHH
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLK-PD----VYTYTAVMDGFCKVGR--------------------SNEA 244 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~--------------------~~~a 244 (479)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334555555555666666666655554432000 01 2244444445555555 4444
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
...+++..+. ....+..+ ...++..+...+...|++++|...+++..+
T Consensus 167 ~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSL-------------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHH-------------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444443221 00011001 123444455555555555555555555442
Q ss_pred cCC-CcC----HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHhcCCCHHHHHHHH
Q 011714 324 FGF-EVD----ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV-T----DPGTYGIVIRTLGKGKKTDEALIHL 393 (479)
Q Consensus 324 ~~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (479)
... .++ ...+..+...+. ..|++++|...+++....... . ...++..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYI-----FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 210 011 112222333332 446666666666655432110 0 1346778888899999999999999
Q ss_pred HHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHhccCCH
Q 011714 394 HHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLLFLMYEH----AK-IPSRTSYDMLITKLDQLEKS 456 (479)
Q Consensus 394 ~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 456 (479)
+++.+.... ++ ..++..+..++...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 887654111 11 456778888889999999999999887653 11 11245667777777777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=126.50 Aligned_cols=279 Identities=14% Similarity=0.089 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP-D 224 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 224 (479)
....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555555566666666666666655542 112 234555555555556666665555554321 1111 1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHhHHHHHHH
Q 011714 225 VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC-LPDKISYSTLLN 303 (479)
Q Consensus 225 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 303 (479)
..++..+...+...|++++|...++++.+... ..+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------------hcccccchHHHHHHHHH
Confidence 23344444455555555555555544433200 0000 001224445555
Q ss_pred HHHhcCC--------------------hHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHH
Q 011714 304 GLLKWGK--------------------IRPAVSIFKEMVRF----GFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVF 358 (479)
Q Consensus 304 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 358 (479)
.+...|+ +++|...+.+..+. +..+. ...+..+...+. ..|++++|...+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~ 210 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY-----LLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTBHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH-----HccCHHHHHHHH
Confidence 5555555 66666666654421 11111 123334444443 679999999999
Q ss_pred HHHHhCCCC-CC----hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHH
Q 011714 359 EKMTKKVSV-TD----PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLL 428 (479)
Q Consensus 359 ~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~ 428 (479)
++....... ++ ..++..+..++...|++++|...++++.+.... ++ ..++..+...+...|++++|...+
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 987643111 11 237888999999999999999999988754111 11 457788889999999999999999
Q ss_pred HHHHhCCC-CCC----HhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 429 FLMYEHAK-IPS----RTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 429 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
++..+... ..+ ..++..+..+|...|++++|.+.++++++.
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99876421 111 557888999999999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=110.36 Aligned_cols=218 Identities=7% Similarity=-0.008 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 102 ETAVKFFSEASSYGLAPNSWTFSIMIRCYC-------NKNDF-------FEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 102 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
++|+.+|+++.+.. +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655532 445555655555544 23554 6667777766652113345566666666666
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPN-IQ-TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC-KVGRSNEA 244 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 244 (479)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+... .+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777776654 232 22 566666666667777777777777665432 23334433332221 25777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN-CLP--DKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
..+|+..++... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777766422 255666777777777777777777777776652 233 3456666666666777777777777776
Q ss_pred HHc
Q 011714 322 VRF 324 (479)
Q Consensus 322 ~~~ 324 (479)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=127.18 Aligned_cols=280 Identities=14% Similarity=0.082 Sum_probs=204.4
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV----TTFTILVNSLCKSGRLKEALEVLDQMGRI----G-CKPNI 190 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 190 (479)
...+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455667788999999999999999999864 2233 57888999999999999999999988653 1 12345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKND----G-LKPDVYTYTAVMDGFCKVGR-----------------SNEAMELL 248 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 248 (479)
.++..+...|...|++++|...+++.... + ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888999999999999999999987654 1 11235578888899999999 99999999
Q ss_pred HHHHHC----CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhcCChHHHHHHH
Q 011714 249 NEAIER----GV-TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD----KISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 249 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
++..+. +. ......+..+...|...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887653 11 112347888899999999999999999988664211 11 126667777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 319 KEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
++..+... ..++. .....++..+..++...|++++|...++++.+
T Consensus 287 ~~al~~~~--------------------~~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 287 KRTLALAV--------------------ELGER---------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHH--------------------HTTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------HcCCH---------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76654210 00100 00134567778888888999999988888765
Q ss_pred cCC----C-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 399 MGH----I-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 399 ~~~----~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
... . ....++..+..+|...|++++|..++++..+..
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 311 1 113467778888889999999999998888753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-12 Score=113.04 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVM-------LNEQ-------ETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
++|+.+|+......+. ++..|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6788899998876544 88889888888763 5885 9999999999973114567789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPN-VT-TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC-YVGRVEEA 209 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 209 (479)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985 343 44 89999999999999999999999999875 345555654443322 37999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCC--CHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 210 YEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERG-VTP--NVVTFNTLFNGYCKEGTPMKGVGLLKLM 286 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 286 (479)
..+|+...+... -+...|..++..+.+.|++++|..+|++.++.. .+| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999987632 368889999999999999999999999999863 344 4668899999999999999999999998
Q ss_pred HhCC
Q 011714 287 KKRN 290 (479)
Q Consensus 287 ~~~~ 290 (479)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-12 Score=105.09 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++.+|..+...+...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677778888888888888888888877654 4567777777788888888888888877777653 345666777777
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
.+...++++.+.+.+.+..... +.+..++..+...+.+.|++++|++.|++..+... .+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777788888888777776654 44566777777777777777777777777776542 256677777777777777777
Q ss_pred HHHHHHHHHHC
Q 011714 244 AMELLNEAIER 254 (479)
Q Consensus 244 a~~~~~~~~~~ 254 (479)
|++.|+++++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=122.68 Aligned_cols=279 Identities=14% Similarity=0.105 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP-DVYT 227 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 227 (479)
.+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...+++.... +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666777777777777766553 222 245566666666677777777766665432 1111 1344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCC-------------hhhHHHHHHHHHhC
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAIERGV-TPN----VVTFNTLFNGYCKEGT-------------PMKGVGLLKLMKKR 289 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~ 289 (479)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 55555666666666666666665543200 001 1244444455555555 0000000
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhC
Q 011714 290 NCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF----GFEVD-ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK 364 (479)
Q Consensus 290 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 364 (479)
+++|...+++.... +..+. ...+..+...+. ..|++++|...+++....
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY-----LLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHHHHH
Confidence 44444444333211 10111 112222222232 446666666666655432
Q ss_pred CC-----CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 365 VS-----VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI-PR----TITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 365 ~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
.. ......+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11 001236788889999999999999999988753111 11 456788888999999999999999988764
Q ss_pred CC-----CCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 435 AK-----IPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 435 ~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.. .....++..+...|.+.|++++|...++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 21 112447788999999999999999999999885
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=126.83 Aligned_cols=217 Identities=10% Similarity=-0.034 Sum_probs=178.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF-FEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEV 177 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 177 (479)
+.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888776553 45788888889999999999 99999999988764 44688899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------CC
Q 011714 178 LDQMGRIGCKPNIQTYNCLLKGLCYV---------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV--------GR 240 (479)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~ 240 (479)
|++..+. .|+..++..+...+... |++++|+..+++..+... -+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 9998877 46678888889999888 999999999999887643 3678888888888888 88
Q ss_pred HHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 011714 241 SNEAMELLNEAIERGVT--PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIF 318 (479)
Q Consensus 241 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (479)
+++|+..|+++++.... .+...|..+..+|...|++++|+..|++..+... .+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999886321 3778889999999999999999999999887642 25667888888888889988888766
Q ss_pred HHH
Q 011714 319 KEM 321 (479)
Q Consensus 319 ~~~ 321 (479)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=118.52 Aligned_cols=231 Identities=11% Similarity=-0.003 Sum_probs=141.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC--CCCHhHHH
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIER----GVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----NC--LPDKISYS 299 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~ 299 (479)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1111 2245555666666666666666666655432 10 01124566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHhcccchhhccHHHHHHHHHHHHh-----CCCCCC
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDE----RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-----KVSVTD 369 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 369 (479)
.+...|...|++++|...+.+.++.... ++. .++..+-..+. ..|++++|...+++... ......
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-----SQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 6666677777777777777666532110 111 12333333333 55777777777777665 221223
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCC-CCHh
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMG----HIPRTITFNNVIQALCGEGK---IDKALLLLFLMYEHAKI-PSRT 441 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~ 441 (479)
..++..+..++...|++++|.+.++++.+.. -+.....+..+...+...|+ +++|+.++++. +.. ....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 4678888999999999999999999877541 11112235667778888898 77777777665 222 2345
Q ss_pred hHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 442 SYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
.+..+...|...|++++|.+.++++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6778889999999999999999998774
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-12 Score=116.42 Aligned_cols=163 Identities=8% Similarity=-0.058 Sum_probs=112.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRI----GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG--L----KPDVYTYT 229 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 229 (479)
....+...|++++|.+.+++..+. +-++ ...++..+...|...|++++|...+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888777653 1111 23567777778888888888888877765421 1 11235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhHHH
Q 011714 230 AVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-----RNCLPDKISYS 299 (479)
Q Consensus 230 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 299 (479)
.+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|+..+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888888888888888877653 111 1123677788888888888888888888766 22133456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.+...+...|++++|...+++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888887664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-13 Score=120.30 Aligned_cols=275 Identities=15% Similarity=0.070 Sum_probs=183.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN----VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCK-PNI 190 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 190 (479)
...+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666788899999999999999999864 223 467888999999999999999999987543 211 235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL-KPD----VYTYTAVMDGFCKVGR--------------------SNEAM 245 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~ 245 (479)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998765311 112 3477788888888998 78888
Q ss_pred HHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhcCChHHHH
Q 011714 246 ELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD----KISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 246 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~ 315 (479)
..+++..+. +.. .....+..+...+...|++++|...+++..+.... ++ ..++..+...+...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 236 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------- 236 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-------
Confidence 777766432 101 11224455555556666666666665555432000 00 11333333344444
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHhcCCCHHHHH
Q 011714 316 SIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSV-----TDPGTYGIVIRTLGKGKKTDEAL 390 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 390 (479)
|++++|...+++....... ....++..+...+...|++++|.
T Consensus 237 ---------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 237 ---------------------------------GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5555555555544321100 01346778888999999999999
Q ss_pred HHHHHHHHcC----CC-CchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 391 IHLHHAIEMG----HI-PRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 391 ~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..++++.+.. .. ....++..+..++...|++++|..+++++.+..
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999876541 11 113467788889999999999999999988753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-12 Score=102.37 Aligned_cols=166 Identities=15% Similarity=0.122 Sum_probs=86.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 119 NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+..+|..+...|...|++++|++.|++..+.. |-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555443 2345555555555555555555555555554443 233444455555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 199 GLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
.+...++++.+...+.+...... .+...+..+..++...|++++|++.|++.++.... +...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555544321 23445555555555555555555555555544222 34445555555555555555
Q ss_pred HHHHHHHHHh
Q 011714 279 GVGLLKLMKK 288 (479)
Q Consensus 279 a~~~~~~~~~ 288 (479)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=123.98 Aligned_cols=217 Identities=9% Similarity=-0.014 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL-KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEML 213 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 213 (479)
.++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666777665542 44677888888888888888 88888888887764 445778888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--------CCh
Q 011714 214 MNVKNDGLKPDVYTYTAVMDGFCKV---------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE--------GTP 276 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 276 (479)
++..+. .|+...+..+..++... |++++|+..|+++++.... +...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 888875 35567778888888888 8888888888888776433 567788888888877 888
Q ss_pred hhHHHHHHHHHhCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHH
Q 011714 277 MKGVGLLKLMKKRNCL--PDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDA 354 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 354 (479)
++|+..|++..+.... -+...|..+..++...|++++|.+.|++..+.... +...+..+...+. ..|++++|
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~-----~lg~~~eA 311 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLE-----FLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-----HHHHHHHH
Confidence 8888888888775321 36777888888888888888888888888765322 3334444444443 55778888
Q ss_pred HHHHHHHH
Q 011714 355 YQVFEKMT 362 (479)
Q Consensus 355 ~~~~~~~~ 362 (479)
...+.++.
T Consensus 312 i~~~~~~~ 319 (474)
T 4abn_A 312 LESKGKTK 319 (474)
T ss_dssp HHHTTTCC
T ss_pred HHHhcccc
Confidence 77665544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=118.86 Aligned_cols=239 Identities=16% Similarity=0.092 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC------C
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSY-------GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN------G 150 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 150 (479)
+..++..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5667778888888888888888888887752 22334566778888888888888888888887653 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011714 151 -YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI------GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND--- 219 (479)
Q Consensus 151 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 219 (479)
.+....++..+...+...|++++|.+.+++..+. +. +....++..+...+...|++++|++++++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567778888888888888888888887653 21 223456777888888889999888888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCCH-------hhHHHHHHHHHhcCChhhHHH
Q 011714 220 ---GLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-------GVTPNV-------VTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 220 ---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 281 (479)
+..| ...++..+..++...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456778888888889999999888888753 111111 112222333444556666666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.++...... +....++..+..+|...|++++|...+++.++
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665432 22456777888888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-12 Score=115.57 Aligned_cols=168 Identities=18% Similarity=0.085 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRI-------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND------G-L 221 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 221 (479)
.++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444455555555554444431 11222334444555555555555555555544432 1 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER------GV-TPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----- 289 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 289 (479)
.....++..+...+...|++++|...++++.+. +. ......+..+...+...|++++|+.+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555555566666666666666555442 11 112334556666666666666666666666443
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 290 -NCLP-DKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 290 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
+..| ...++..+...+...|++++|...++++.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234566667777777777777777777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-11 Score=109.04 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=138.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCC-CC----CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CC-CHhHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIERGV-TP----NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----NC-LP-DKISYST 300 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~ 300 (479)
...+...|++++|...|+++.+... .+ ...++..+...|...|+++.|+..+++..+. +. .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666654310 01 1234556666666666666666666665432 10 11 1345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh-----CCCCCCh
Q 011714 301 LLNGLLKWGKIRPAVSIFKEMVRF----GFEV-DERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK-----KVSVTDP 370 (479)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 370 (479)
+..+|...|++++|.+.+.+.++. +..+ ...++..+-..+. ..|++++|...+++... ..+. ..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-----~~~~~~~A~~~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-----RSGDDQMAVEHFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHhhCChh-HH
Confidence 666677777777777777665532 1111 1122233333332 55777777777777665 3333 25
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC---C-chHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCC-CCHhh
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHI---P-RTITFNNVIQALCGEGK---IDKALLLLFLMYEHAKI-PSRTS 442 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~ 442 (479)
.++..+..++.+.|++++|...+++..+.... + ....+..+...+...++ +.+|+.++++ .+.. .....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence 67788888999999999999999988765221 1 12345555566777787 7777777765 2222 23345
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 443 YDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
+..+...|...|++++|...|+++++
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=98.23 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455666667777777777777777766543 3456666777777777777777777777776553 3456666667777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766553 3455666666666667777777777776666543 22455666666666666666666
Q ss_pred HHHHHHHHH
Q 011714 245 MELLNEAIE 253 (479)
Q Consensus 245 ~~~~~~~~~ 253 (479)
...++.+.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=106.50 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=110.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CC-CHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRIGC-KP----NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KP-DVYTYT 229 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 229 (479)
....+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++..+. +. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455677888888888887764310 11 2346677777888888888888887776542 10 11 245667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhHHH
Q 011714 230 AVMDGFCKVGRSNEAMELLNEAIER----GVT-PNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK-----RNCLPDKISYS 299 (479)
Q Consensus 230 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 299 (479)
.+..+|...|++++|...+++.++. +.. ....++..+..+|...|++++|+..+++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7778888888888888888777652 111 1234567777788888888888888887766 3322 356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
.+...+.+.|++++|...+++..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7778888888888888888877653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-10 Score=104.52 Aligned_cols=201 Identities=11% Similarity=-0.040 Sum_probs=111.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC----CCCHhH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER----GVT--P-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNC----LPDKIS 297 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 297 (479)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...... .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555556666665555555432 111 1 122344455555666666666666665543211 111234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHH----HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC--
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV--DERMMN----SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD-- 369 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 369 (479)
+..+...+...|++++|...+++.......+ ...... .....+. ..|++++|...++........+.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ-----MTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH-----HCCCHHHHHHHHHhCCCCCCCcchh
Confidence 5556666666777777777776665321111 111111 1111122 45777777777777654332211
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCch-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 011714 370 -PGTYGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPRT-ITFNNVIQALCGEGKIDKALLLLFLMYEH 434 (479)
Q Consensus 370 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 434 (479)
...+..+..++...|++++|...++++... +..++. ..+..+..++...|+.++|...+++....
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 123566778888889999998888877643 211122 25566677788889999998888887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-11 Score=118.97 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
++.+|+.|...+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 57889999999999999999999999998764 5568899999999999999999999999998864 446889999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 243 (479)
++.+.|++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.|++..+.... +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998875 456889999999999999999999999999886433 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 011714 244 AMELLNEAIE 253 (479)
Q Consensus 244 a~~~~~~~~~ 253 (479)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-09 Score=100.31 Aligned_cols=376 Identities=11% Similarity=0.023 Sum_probs=248.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCh--
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE---QETAVKFFSEASSYG-LAPNSWTFSIMIRCYCNKNDF-- 136 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-- 136 (479)
.+....+..+|+.+....+ .+...|...+..-.+.++ ++.+..+|++..... .+|++..|...+....+.++.
T Consensus 79 ~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred cCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 4678889999999887644 478889988988888888 999999999988753 138888888888776665553
Q ss_pred ------hhHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011714 137 ------FEARKVIDCMFD-NGY-HP-NVTTFTILVNSLCK---------SGRLKEALEVLDQMGRIGCKPNIQTYNCLLK 198 (479)
Q Consensus 137 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 198 (479)
+...++|+..+. .|. .+ +...|...+..... .++++.+..+|++........-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334467776653 354 44 45678877765442 3456777888888775311111222211111
Q ss_pred HHHh-------------cCCHHH---------------------------------------------------------
Q 011714 199 GLCY-------------VGRVEE--------------------------------------------------------- 208 (479)
Q Consensus 199 ~~~~-------------~~~~~~--------------------------------------------------------- 208 (479)
.-.. ..+++.
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0000 001111
Q ss_pred ----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh
Q 011714 209 ----------AYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM-ELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM 277 (479)
Q Consensus 209 ----------a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (479)
+..+|++..... +-....|...+..+...|+.++|. .+|+..... .+.+...|...+...-+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 122233333221 113444455555566778888896 999999875 3456777888889999999999
Q ss_pred hHHHHHHHHHhCCC---------CCC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CcCHHHHH
Q 011714 278 KGVGLLKLMKKRNC---------LPD------------KISYSTLLNGLLKWGKIRPAVSIFKEMVRF-GF-EVDERMMN 334 (479)
Q Consensus 278 ~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~ 334 (479)
+|.++|+++..... .|+ ...|...+....+.|+.+.|..+|..+.+. +. .+...+..
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999876310 121 235777778888889999999999999875 21 22222222
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--chHHHHHHH
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP--RTITFNNVI 412 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 412 (479)
+.+... ..++.+.|..+|+...+..+. +...|...+......|+.+.|..+|++++.....+ ....|...+
T Consensus 476 A~lE~~------~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 476 AYIEYH------ISKDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp HHHHHT------TTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHH------hCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 222211 225589999999998876443 56778888888888999999999999998763321 345788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..-...|+.+.+..+.+++.+.. |+......+++-|
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 88889999999999999999875 3433434444433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-10 Score=104.12 Aligned_cols=270 Identities=11% Similarity=0.019 Sum_probs=184.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HhhHHH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV----YTYTAVMDGFCKVGRSNEAMELLNEAIERGV-TPN----VVTFNT 265 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 265 (479)
.....+...|++++|...+++........+. .++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556678888888888777665322222 2455666777888999999888888765311 011 233567
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----CHHHHH
Q 011714 266 LFNGYCKEGTPMKGVGLLKLMKKR----NCL--P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV----DERMMN 334 (479)
Q Consensus 266 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 334 (479)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+..+..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999987653 221 2 23456778888999999999999999987643221 123333
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC-hhhHH-----HHHHHHhcCCCHHHHHHHHHHHHHcCCCC---ch
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD-PGTYG-----IVIRTLGKGKKTDEALIHLHHAIEMGHIP---RT 405 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~ 405 (479)
.+...+. ..|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ..
T Consensus 179 ~la~~~~-----~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 179 MLIQCSL-----ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHH-----HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHH-----HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 4444443 67999999999998765321111 11122 23345779999999999999876543221 12
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 406 ITFNNVIQALCGEGKIDKALLLLFLMYEH----AKIPSR-TSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 406 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
..+..+..++...|++++|...+++..+. +..++. ..+..+..++...|+.++|...++++++.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24667788899999999999999988653 211122 36667788899999999999999988763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-11 Score=117.71 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=149.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+-+..+|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3357789999999999999999999999999864 4468899999999999999999999999998875 4568899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
..++...|++++|++.|++..+.... +...|..+..+|...|++++|+..|+++++.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999886433 6889999999999999999999999999987533 678899999999999999
Q ss_pred hhHHHHHHHHHh
Q 011714 277 MKGVGLLKLMKK 288 (479)
Q Consensus 277 ~~a~~~~~~~~~ 288 (479)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.5e-11 Score=95.86 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555555666666666665555432 2345555555555555666666666665555442 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 281 (479)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 22444455555555555555555555555544321 234444555555555555555555
Q ss_pred HHHHHH
Q 011714 282 LLKLMK 287 (479)
Q Consensus 282 ~~~~~~ 287 (479)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-10 Score=96.09 Aligned_cols=196 Identities=13% Similarity=0.001 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.++...+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888888889999999999888876533677777778888888899999998888888764 33677788888
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNI-------QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD---VYTYTAVM 232 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 232 (479)
.++...|++++|++.+++..+.. +.+. .+|..+...+...|++++|+..|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888899999999888888764 3344 45777778888888899999998888765 343 45666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 233 DGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.++... +...++++...+.. +...|.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 666543 34445555544322 333343333 234556788888888887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=105.73 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=157.0
Q ss_pred cCChhhHHHHHHHH-------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHhHHHHHH
Q 011714 63 ASPLKERIDIFDSI-------KKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY------GL-APNSWTFSIMIR 128 (479)
Q Consensus 63 ~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 128 (479)
.+++++|+..++.. ...+.+....++..+...+...|++++|+..|+++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34555555555443 33343446788999999999999999999999998753 21 234668889999
Q ss_pred HHHhcCChhhHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHH
Q 011714 129 CYCNKNDFFEARKVIDCMFDN------G-YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI------G-CKPNIQTYN 194 (479)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 194 (479)
++...|++++|.+.+++.... . .+....++..+...+...|++++|.+.+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998754 1 1234677888999999999999999999998764 1 122456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHccCCHH------HHHHHHHHHHHCCCCCCH
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKND-------GLKPD-VYTYTAVMDGFCKVGRSN------EAMELLNEAIERGVTPNV 260 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 260 (479)
.+...+...|++++|..++++..+. ...+. ...+..+...+...+... .+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 9999999999999999999988753 11222 223333333333333322 22222222111 112234
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 261 VTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999988653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-10 Score=94.25 Aligned_cols=197 Identities=13% Similarity=0.023 Sum_probs=154.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
+.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|++.+++..+.. +.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346688889999999999999999999999987643788888889999999999999999999999875 4467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhhHHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDV-------YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN---VVTFNTL 266 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 266 (479)
...+...|++++|+..+++..+.... +. ..|..+...+...|++++|+..|+++++. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999876432 44 55778888899999999999999999876 344 4567777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011714 267 FNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFG 325 (479)
Q Consensus 267 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (479)
..+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 77776544 344555555432 2344444443 334567899999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=8.2e-11 Score=103.48 Aligned_cols=227 Identities=16% Similarity=0.077 Sum_probs=153.4
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCCHHHHHHHH
Q 011714 97 MLNEQETAVKFFSEASS-------YGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN------G-YHPNVTTFTILV 162 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li 162 (479)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666665543 222334677888999999999999999999998753 1 123466788899
Q ss_pred HHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI------G-CKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND------GLKP-DVYTY 228 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 228 (479)
.+|...|++++|.+.+++.... . .+....++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988754 1 1234667888999999999999999999988764 1122 35678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-------CCCCC-HhhHHHHHHHHHhcCChhhHHHHHHHHH---hC--CCCCCH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIER-------GVTPN-VVTFNTLFNGYCKEGTPMKGVGLLKLMK---KR--NCLPDK 295 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~--~~~~~~ 295 (479)
..+..++...|++++|...++++.+. ...+. ...+..+...+...+....+..+..... .. ..+...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88889999999999999999988763 11222 2334444444444333333322211111 11 112234
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 296 ISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.++..+...+...|++++|..++++.++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788888899999999999888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-09 Score=82.59 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555555556666666666666655433 3344555555555555556666666555555442 234445555555555
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555432 22344445555555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-08 Score=91.44 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 242 NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+.+..+|++++... +.+...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34667888877753 335677888888888888888999998888876 32332222 12222111221 2222
Q ss_pred HHcC---------CCcC---HHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCHHH
Q 011714 322 VRFG---------FEVD---ERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG-KKTDE 388 (479)
Q Consensus 322 ~~~~---------~~~~---~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 388 (479)
.+.- ..+. ..++...+... .+.+..+.|..+|++. .. +..+...|...+..-... ++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-----~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYV-----LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHH-----HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHH-----HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 2110 0011 12222333322 2457799999999988 32 222444454333322223 36999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 389 ALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 389 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
|..+|+...+.. +-++..+...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++++
T Consensus 339 ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999988753 2234456667777778899999999999873 2567788888777778999999999998875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=89.40 Aligned_cols=114 Identities=12% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSI----------------MIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
.+......+...|++++|+..|++..+.. +.+...|.. +..++.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 33444455566677777777777766542 222333433 4555555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
+.+...+..+..++...|++++|+..|++..+.. +.+..+|..+...|...
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 2244555555555555555555555555555443 33444555555444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-09 Score=93.99 Aligned_cols=208 Identities=12% Similarity=0.008 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHPN-VTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a 174 (479)
++++|...|++. ...|...|++++|...|++.... |-+++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777766665 33456677777777777766532 21111 45677777777778888888
Q ss_pred HHHHHHHhhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHccCCHHH
Q 011714 175 LEVLDQMGRIGC---KP--NIQTYNCLLKGLCYV-GRVEEAYEMLMNVKNDGLKP-D----VYTYTAVMDGFCKVGRSNE 243 (479)
Q Consensus 175 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~ 243 (479)
+..+++..+... .+ -..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777654210 11 134677777777775 88888888887766531100 1 3456777778888888888
Q ss_pred HHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC---HhHHHHHHHHHH--hcCCh
Q 011714 244 AMELLNEAIERGVTPNV------VTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PD---KISYSTLLNGLL--KWGKI 311 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~~~~ 311 (479)
|+..|+++.+....... ..|..+..++...|++++|+..+++..+.... ++ ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888887775332221 14566677777888888888888777653211 01 112334444443 34556
Q ss_pred HHHHHHHHHHH
Q 011714 312 RPAVSIFKEMV 322 (479)
Q Consensus 312 ~~a~~~~~~~~ 322 (479)
++|...|+.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-09 Score=92.07 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN---SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPNVTTF 158 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 158 (479)
++..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|...|+...+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 55666666677777777777777777776643 223 45666777777777777777777777766421 1123455
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHhhC
Q 011714 159 TILVNSLCK--------SGRLKEALEVLDQMGRI 184 (479)
Q Consensus 159 ~~li~~~~~--------~g~~~~a~~~~~~~~~~ 184 (479)
..+..++.. .|++++|+..|++..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 666666666 77777777777777665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-08 Score=85.98 Aligned_cols=245 Identities=9% Similarity=0.060 Sum_probs=155.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 011714 56 RFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (479)
.+-+..-.|....++.-...+. .......-.-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 19 ~ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 4445556677777776332221 111222333455777777776632 11134433444444333 222
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC-KPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
|+..++++...+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677777777654 45566666788888888999999999888766542 1356777788888889999999999998
Q ss_pred HHHHCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011714 215 NVKNDGLKP-----DVYTYTAVMDGF--CK--VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 215 ~~~~~~~~~-----~~~~~~~li~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
+|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88764 44 245555555552 22 33888889999888665 23423334444578888999999888887
Q ss_pred HHhCC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 286 MKKRN---------CLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 286 ~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
+.+.- -+-+..++..+|......|+ +|.+++.++.+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 65431 12356666566666666676 778888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-09 Score=80.29 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666665443 2345555556666666666666666666655543 334455555555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666555432 12344555555555556666666665555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-09 Score=93.57 Aligned_cols=198 Identities=10% Similarity=0.036 Sum_probs=143.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CC--CHHHHHH
Q 011714 91 LLMALVMLNEQETAVKFFSEASSY----GLAPN-SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY---HP--NVTTFTI 160 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ 160 (479)
....+...|++++|+..|++.... |-+++ ..+|+.+..+|...|++++|+..+++..+... .+ -..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355678899999999999987643 31222 56889999999999999999999998874311 11 1457888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHH
Q 011714 161 LVNSLCKS-GRLKEALEVLDQMGRIGCK-PN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDV------YTY 228 (479)
Q Consensus 161 li~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 228 (479)
+..+|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|+..|++..+....... ..+
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999996 9999999999988764210 01 357888999999999999999999999886433221 256
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCC-CC---HhhHHHHHHHHH--hcCChhhHHHHHHHHHh
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIERGVT-PN---VVTFNTLFNGYC--KEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 288 (479)
..+..++...|++++|...|++.++.... ++ ...+..++..+. ..+++++|+..|+.+..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77888899999999999999998764211 01 112344555554 45667788887766544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=88.23 Aligned_cols=180 Identities=8% Similarity=0.019 Sum_probs=126.9
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 104 AVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 104 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777888777655 55666666777888888999999988888876543 2367778888888888999999999998887
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 183 RIGCKP-----NIQTYNCLLKGLC--YVG--RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 183 ~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 2455555655532 233 788889999888664 34533444455578888999999988886654
Q ss_pred CC---------CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 254 RG---------VTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 254 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
.- -+.+..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02355666566666666675 7888888888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-09 Score=107.75 Aligned_cols=174 Identities=10% Similarity=-0.038 Sum_probs=125.4
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 96 VMLNEQETAVKFFSEAS--------SYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 96 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888877 432 4456677777888888888888888888887654 3467778888888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011714 168 SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMEL 247 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 247 (479)
.|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877764 3456777788888888888888 8888887765432 567777888888888888888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 248 LNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
|+++.+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8877765322 35566666666655554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-07 Score=82.42 Aligned_cols=224 Identities=11% Similarity=0.045 Sum_probs=133.4
Q ss_pred HHhcCCh-hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH----Hh
Q 011714 60 RIKASPL-KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN--EQETAVKFFSEASSYGLAPNSWTFSIMIRCY----CN 132 (479)
Q Consensus 60 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 132 (479)
.++.+.. ++|+.+++.+...++. +...|+.--..+...+ ++++++..++.+.... +.+..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344543 6788888888777655 6777887777777777 8888888888877654 44455555444443 34
Q ss_pred c---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--
Q 011714 133 K---NDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLK--EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR-- 205 (479)
Q Consensus 133 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 205 (479)
. +++++++++++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+.+ +-|..+|+.....+.+.++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 4 56777777777777654 446666666666666666666 7777777777654 4466666666655555554
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChhh
Q 011714 206 ----VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNE-AMELLNEAIERG--VTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 206 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
++++++.++++....+. |...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..+..+|.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 55566666555554332 55555555555555554322 333443333221 11244455555555555555555
Q ss_pred HHHHHHHHHh
Q 011714 279 GVGLLKLMKK 288 (479)
Q Consensus 279 a~~~~~~~~~ 288 (479)
|+++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-07 Score=83.16 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN--DFFEARKVIDCMFDNGYHPNVTTFTILVNSL----CKS---GR 170 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 170 (479)
..++|+.+++.++... +-+..+|+.--.++...| +++++++.++.+.... +-+..+|+.-..++ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998775 556677888888888888 9999999999999865 44667776655555 455 78
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------HH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE--EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR------SN 242 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 242 (479)
+++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. +...|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999999876 668899999888888899888 999999999987654 88888877777777776 88
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 011714 243 EAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK-GVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (479)
++++.++.++...+. |...|+-+...+.+.|+... +..+.+++...+ -..+...+..++..+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999999887554 88889988888888887554 555666665432 13467888888899999999999999999
Q ss_pred HHHH
Q 011714 320 EMVR 323 (479)
Q Consensus 320 ~~~~ 323 (479)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-08 Score=83.04 Aligned_cols=175 Identities=11% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG----RVEEAYEMLM 214 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 214 (479)
|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..+...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 44444444444545555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----cCChhhHHHHHHH
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIERGVT-PNVVTFNTLFNGYCK----EGTPMKGVGLLKL 285 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 285 (479)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .+...+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 33444444444444 45555555555555544321 013444555555554 4455555555555
Q ss_pred HHhCCCCCCHhHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 011714 286 MKKRNCLPDKISYSTLLNGLLKW-G-----KIRPAVSIFKEMVRFG 325 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 325 (479)
..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55441 1233344444444332 1 5555666555555544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=107.71 Aligned_cols=173 Identities=12% Similarity=-0.001 Sum_probs=144.9
Q ss_pred HhcCChhhHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 131 CNKNDFFEARKVIDCMF--------DNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 131 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 432 4567889999999999999999999999998865 5578899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011714 203 VGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGL 282 (479)
Q Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 282 (479)
.|++++|++.|++..+.... +...+..+..++...|++++ +..|+++++.... +...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886433 67788899999999999999 9999999987543 677899999999999999999999
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHhcCC
Q 011714 283 LKLMKKRNCLPD-KISYSTLLNGLLKWGK 310 (479)
Q Consensus 283 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 310 (479)
|++..+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99888764 43 5667777777655444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-09 Score=89.15 Aligned_cols=102 Identities=10% Similarity=-0.026 Sum_probs=75.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILVNSLCKSGRLKEALEVLDQMGRIGC--KPNIQ 191 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 191 (479)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|+..|++..+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777788888888888888888888753 223 56777788888888888888888888877531 12245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 011714 192 TYNCLLKGLCY--------VGRVEEAYEMLMNVKND 219 (479)
Q Consensus 192 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 219 (479)
++..+..++.. .|++++|+..|+++.+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 66677777777 88888888888887765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-08 Score=83.73 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC----ChhhHHHHH
Q 011714 68 ERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN----DFFEARKVI 143 (479)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 143 (479)
+|+..|+...+.| ++..+..+...+...+++++|+..|++..+.| +...+..+...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3444554444432 44455555555555555555555555555433 34444444444444 3 455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCK----SGRLKEALEVLDQMGRIGCK-PNIQTYNCLLKGLCY----VGRVEEAYEMLM 214 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 214 (479)
++..+.| +...+..|..+|.. .+++++|+++|++..+.|.. .+..++..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554433 44444445444444 44555555555555544310 013444444444444 444555555555
Q ss_pred HHHHC
Q 011714 215 NVKND 219 (479)
Q Consensus 215 ~~~~~ 219 (479)
+..+.
T Consensus 154 ~A~~~ 158 (212)
T 3rjv_A 154 GSSSL 158 (212)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 54443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.3e-09 Score=85.82 Aligned_cols=172 Identities=12% Similarity=0.024 Sum_probs=131.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011714 54 AQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFND----------------LLMALVMLNEQETAVKFFSEASSYGLA 117 (479)
Q Consensus 54 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~~~~~~A~~~~~~~~~~~~~ 117 (479)
+......+..|+.++|+..|+...+.++. +...|.. +...+.+.|++++|+..|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 44555667889999999999998876543 5666777 8999999999999999999998875 5
Q ss_pred CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHH
Q 011714 118 PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR--LKEALEVLDQMGRIGCKPNIQTYNC 195 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (479)
.+...+..+..++...|++++|...|++..+.. |.+..+|..+..+|...|+ .+.+...+..... ..|....+..
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~ 162 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYR 162 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHH
Confidence 678899999999999999999999999999875 4578889999888876654 4455666665542 1333334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVM 232 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 232 (479)
...++...|++++|+..|++..+. .|+......+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 566677789999999999998875 56655444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-09 Score=86.05 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS-LC 166 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~ 166 (479)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3445555666666666666666655432 3345566666666666666666666666655432 233332222111 11
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKP-DVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 245 (479)
..+...+|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122233455555555442 2245555555555555666666666665555543221 2334555555555555555555
Q ss_pred HHHHHHH
Q 011714 246 ELLNEAI 252 (479)
Q Consensus 246 ~~~~~~~ 252 (479)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-06 Score=83.52 Aligned_cols=357 Identities=9% Similarity=-0.033 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHhHHHHH
Q 011714 51 SLQAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE-QETAVKFFSEASSY-GL-APNSWTFSIMI 127 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~ 127 (479)
...+.+++..++.+..+.+..+|+..... .|++..|...+....+.++ .+....+|+.+... |. +.+...|...+
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34556677777889999999999998874 4699999999998888774 45677888887653 43 34667888877
Q ss_pred HHHH----hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHhhCCCCCCH
Q 011714 128 RCYC----NKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK-------------SGRLKEALEVLDQMGRIGCKPNI 190 (479)
Q Consensus 128 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~ 190 (479)
..+. ..++.+.+.++|+..+......-...|......-.. .+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788899999999874211112233332221111 12233344444444321001134
Q ss_pred HHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhH
Q 011714 191 QTYNCLLKGLCYVG--R-----VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTF 263 (479)
Q Consensus 191 ~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (479)
..|...+..-...+ - .+.+..+|+++.... +-+...|...+..+...|+.+.|..++++.+.. +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 46665555433221 1 345678899888753 346788888888889999999999999999987 3233333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC---------CC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 011714 264 NTLFNGYCKEGTPMKGVGLLKLMKKR---------NC---LPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER 331 (479)
Q Consensus 264 ~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (479)
. .|......++. ++.+... +. ......|...+....+.++.+.|..+|..+ +.. ..+..
T Consensus 250 ~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 L----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp H----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred H----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 2 22222222222 2222211 00 011245666666666788899999999998 321 22333
Q ss_pred HHH--HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 332 MMN--SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 332 ~~~--~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
.+. +.+... ..++.+.|..+|+...+..+. ++..|...+......|+.+.|..+|+++. .....|.
T Consensus 321 v~i~~A~lE~~------~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~ 388 (493)
T 2uy1_A 321 VFIYCAFIEYY------ATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHH------HHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHH
T ss_pred HHHHHHHHHHH------HCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHH
Confidence 332 222221 224699999999998876433 45556777888888999999999999862 2567788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 410 NVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
..+..-...|+.+.+..+++++.+
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888777778999999999988874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=90.02 Aligned_cols=167 Identities=15% Similarity=0.074 Sum_probs=98.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNC- 195 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 195 (479)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|...+++.... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555566666666666666666666666543 335566666666666667777777766666554 233332222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcC
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEG 274 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 274 (479)
....+...++.++|...+++...... .+...+..+...+...|++++|...|.++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22234455566666666666665432 255666666666777777777777776666653221 2445666667777777
Q ss_pred ChhhHHHHHHHHH
Q 011714 275 TPMKGVGLLKLMK 287 (479)
Q Consensus 275 ~~~~a~~~~~~~~ 287 (479)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7776666666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=99.05 Aligned_cols=153 Identities=8% Similarity=-0.013 Sum_probs=100.7
Q ss_pred CChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 011714 64 SPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVI 143 (479)
Q Consensus 64 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (479)
++.++|+..++...+.+.. +...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667777777777655443 56777778888888888888888888877654 445677777778888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 011714 144 DCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---GRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 144 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 220 (479)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8777653 3456777777788888888888888888777654 34566777777777777 78888888887777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-09 Score=84.37 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY 202 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (479)
+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+...|.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2234444444444444444444444444444332 2233444444444444
Q ss_pred cCCHHH
Q 011714 203 VGRVEE 208 (479)
Q Consensus 203 ~~~~~~ 208 (479)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-09 Score=83.34 Aligned_cols=141 Identities=10% Similarity=-0.066 Sum_probs=67.6
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
+...|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..++...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334455555555555544321 112233444555555555555555555555544322 455555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHhHHHHHHHHHHhcC
Q 011714 245 MELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGL-LKLMKKRNCLPDKISYSTLLNGLLKWG 309 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (479)
+..|++.++.... +...+..+...|.+.|++++|.+. +++..+... -+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 5555555554322 344555555555555555544433 344444321 13344444444444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-08 Score=81.84 Aligned_cols=186 Identities=9% Similarity=-0.010 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLA-P-NSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNV---TTFT 159 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 159 (479)
...+..+...+...|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+.+.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 344455555666666666666666666543211 1 1245555666666666666666666666654211 11 1233
Q ss_pred HHHHHHH------------------hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 160 ILVNSLC------------------KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 160 ~li~~~~------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
.+..++. ..|+.++|+..|+++.+.. +-+..++...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 3333333 2456777777777776552 1122222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
......+...+.+.|++++|+..|+.+++...... ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456677788888888888888877532211 2457777888888888888888888877764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-08 Score=88.47 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-H
Q 011714 152 HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYT-A 230 (479)
Q Consensus 152 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 230 (479)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455566666677777777777777777776653 4456677777777777777777777777765542 3333222 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CCHhHHHHHHHHHHhcC
Q 011714 231 VMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-PDKISYSTLLNGLLKWG 309 (479)
Q Consensus 231 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 309 (479)
....+...++.++|...+++..+... .+...+..+...+...|++++|+..++++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22234556666677777777766533 25666777777777777777777777777665322 12456777777777777
Q ss_pred ChHHHHHHHHHHH
Q 011714 310 KIRPAVSIFKEMV 322 (479)
Q Consensus 310 ~~~~a~~~~~~~~ 322 (479)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777766654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-07 Score=79.87 Aligned_cols=198 Identities=10% Similarity=0.010 Sum_probs=121.8
Q ss_pred CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHH
Q 011714 259 NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCL-P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDER--MMN 334 (479)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 334 (479)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...|+++++........ .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455667778899999999999999999875322 1 13567788899999999999999999998764332211 122
Q ss_pred HHHHHHhccc-------------chhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 011714 335 SLLRGLCMKS-------------WEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGH 401 (479)
Q Consensus 335 ~l~~~~~~~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 401 (479)
.+...+...+ ....|+.++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 2222221100 00124455555555555443322 11111111000 0000000
Q ss_pred CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCC
Q 011714 402 IPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQR 475 (479)
Q Consensus 402 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 475 (479)
......+...+.+.|++++|+..|+++++..... ....+..++.+|.+.|++++|.+.++.+...+..-..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0011345667888999999999999999875221 1256888999999999999999999999887644333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-09 Score=83.24 Aligned_cols=159 Identities=13% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 011714 123 FSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG-LC 201 (479)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 201 (479)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3444455555555555555555554332 2244555555555555555555555555554432 233222211111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChhhHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTP-NVVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 280 (479)
..+...+|+..+++..+... -+...+..+..++...|++++|...|+++++....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11111223444444443321 134444444444444444444444444444432211 1223444444444444444444
Q ss_pred HHHHH
Q 011714 281 GLLKL 285 (479)
Q Consensus 281 ~~~~~ 285 (479)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-08 Score=97.07 Aligned_cols=152 Identities=10% Similarity=-0.003 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 178 (479)
|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555666665555432 3345555555566666666666666666655543 234555555666666666666666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 011714 179 DQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV---GRSNEAMELLNEAIER 254 (479)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 254 (479)
++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6555543 33455555566666666666666666666555422 2445555555555555 5666666666655554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=89.43 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=120.3
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH
Q 011714 63 ASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVM-LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARK 141 (479)
Q Consensus 63 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (479)
+++..+|..+++...+.... + +.. .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 45566777777666543211 0 111 46666666666654 345666777777777
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 011714 142 VIDCMFDN----GYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP--NIQTYNCLLKGLCYVGRVEEAY 210 (479)
Q Consensus 142 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~ 210 (479)
.|.+.... +-.. -..+|+.+..+|...|++++|+..|++..+. | .+ -..++..+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 77766532 1000 1346667777777778887777777765432 2 11 13456667777777 8888888
Q ss_pred HHHHHHHHCCCC---C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChhhHH
Q 011714 211 EMLMNVKNDGLK---P--DVYTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTPN-VVTFNTLFNGYCKEGTPMKGV 280 (479)
Q Consensus 211 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 280 (479)
..|++....... + ...++..+...+...|++++|+..|++.++. +..+. ...+..+..++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 887776543110 0 1356677777888888888888888877653 11111 124555666677778888888
Q ss_pred HHHHHHH
Q 011714 281 GLLKLMK 287 (479)
Q Consensus 281 ~~~~~~~ 287 (479)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888777
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.1e-06 Score=74.25 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-C-ChhhHHHH
Q 011714 66 LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLN-EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK-N-DFFEARKV 142 (479)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 142 (479)
.++|+++++.+...++. +..+|+.--..+...| .+++++.+++.+.... +.+..+|+.-..++.+. + +.++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 36677777777766654 6666777666666666 4777777777777654 45566666655555554 5 66666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 143 IDCMFDNGYHPNVTTFTILVNSLCKSGRLK--------EALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++.+.. +-|..+|+.....+.+.++
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 77666553 335556655444444444444 5555555555543 3355555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-06 Score=73.48 Aligned_cols=222 Identities=9% Similarity=0.000 Sum_probs=172.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHH
Q 011714 98 LNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS-G-RLKEA 174 (479)
Q Consensus 98 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a 174 (479)
.+..++|+++++++.... +-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344468999999998775 556777888888888888 5999999999999875 45888888877777776 7 89999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC------
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVE--------EAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR------ 240 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------ 240 (479)
+++++++.+.. +.+..+|+...-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 99999999876 568888888777777666666 999999999987654 88899988888888876
Q ss_pred -HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCCC
Q 011714 241 -SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP--------------------MKGVGLLKLMKKRN-----CLPD 294 (479)
Q Consensus 241 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~ 294 (479)
++++++.+++++...+. |...|+-+-..+.+.|+. .........+...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68999999999887544 888888877777777664 23333333333322 1357
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 295 KISYSTLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
......++..|...|+.++|.++++.+.+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999999999998743
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-07 Score=76.51 Aligned_cols=129 Identities=11% Similarity=-0.044 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667777788888888877663 5567777777888888888888888888777654 446677777777788
Q ss_pred hcCChHHHHHHHHHHhhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011714 167 KSGRLKEALEVLDQMGRIGCK--------------P-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDG 220 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 220 (479)
..|++++|.+.|++..+.... | ....+..+..++...|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888777764311 1 12566677777777777777777777777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-07 Score=75.25 Aligned_cols=129 Identities=12% Similarity=-0.086 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|++.+++..+.. +.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677778888888888888763 5577888888888888888888988888887764 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 011714 202 YVGRVEEAYEMLMNVKNDGLK--------------P-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERG 255 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 255 (479)
..|++++|+..|++..+.... | ....+..+..++...|++++|...|+.+.+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888775321 1 12667777888888888888888888887753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-06 Score=77.50 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=77.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHHH
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGY-HPNV----TTFTILVNSLCKSGRLKEALEVLDQMGRIGCK-PN----IQTYNCL 196 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 196 (479)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|++.+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666666666666666654321 1111 12223444455555666666666666542111 11 2245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HhhHHH
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKND-----GLKP-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER----GVTPN-VVTFNT 265 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 265 (479)
...|...|++++|+..|++..+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666555421 1111 1224455555555566666665555554432 11111 334455
Q ss_pred HHHHHHhcCC-hhhHHHHHHHH
Q 011714 266 LFNGYCKEGT-PMKGVGLLKLM 286 (479)
Q Consensus 266 l~~~~~~~g~-~~~a~~~~~~~ 286 (479)
+..+|.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 5555555553 35555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-07 Score=73.59 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666667777777777777777766543 4456666677777777777777777777766553 3356666666667
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNC--LLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 216 (479)
+...|++++|.+.+++..+.. +.+...+.. .+..+...|++++|+..+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777777666543 223334422 223355556666666666544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-07 Score=70.39 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..++..++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 445556666666667777776666666543 4456666666666666666666666666666543 33556666666666
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 011714 166 CKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~ 184 (479)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-07 Score=68.95 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666677777777777777777766543 3455666666666777777777777777666543 3355666666666
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
+...|++++|...++++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 666677777777666666543 23344444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-07 Score=78.31 Aligned_cols=166 Identities=12% Similarity=0.067 Sum_probs=125.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYG-LAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH-PN----VTT 157 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 157 (479)
+...+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...+++....... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778889999999999999988643 12222 13335667777888999999999999874322 22 336
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGR----I-GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD-VY 226 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 226 (479)
++.+..+|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999874 1 1122 2347888999999999999999999987653 22222 67
Q ss_pred HHHHHHHHHHccCC-HHHHHHHHHHHHH
Q 011714 227 TYTAVMDGFCKVGR-SNEAMELLNEAIE 253 (479)
Q Consensus 227 ~~~~li~~~~~~~~-~~~a~~~~~~~~~ 253 (479)
+|..+..++.+.|+ +++|.+.++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999995 6999999988765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=7.2e-08 Score=75.31 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..+..+...+.+.|++++|+..|++++.... .+...|..+..++...|++++|+..|+++.+.. +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 4555666666667777777777776666432 245566666666777777777777777766654 33556666666777
Q ss_pred hccCCHhHHHHHHHHHHhCC
Q 011714 451 DQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~ 470 (479)
.+.|++++|...|+++++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 77777777777777766643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-08 Score=76.71 Aligned_cols=86 Identities=19% Similarity=0.071 Sum_probs=40.5
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|+.....++. +...|..+..++...|++++|+..|++++.... .+...+..+..++...|++++|+.
T Consensus 33 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 33 QSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555554444332 344444455555555555555555555444321 133444444445555555555555
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|++.++.
T Consensus 111 ~~~~al~~ 118 (148)
T 2vgx_A 111 GLFLAQEL 118 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=68.50 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV 238 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 238 (479)
......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|+..+++..+.+. .+...|..+..++...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence 333344444444444444444433332 22333444444444444444444444444433221 1233344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 011714 239 GRSNEAMELLNEAIE 253 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~ 253 (479)
|++++|.+.|++.++
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-07 Score=80.14 Aligned_cols=164 Identities=12% Similarity=-0.025 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSY----GLAP-NSWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GYHP-NVTT 157 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 157 (479)
|+.....+...|++++|...|.+.... +-.. -..+|..+..+|...|++++|...|++..+. |-+. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344466788899999999999987643 2111 1457888999999999999999999987643 2111 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGC---KP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD-VYT 227 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~ 227 (479)
+..+..+|.. |++++|++.|++..+... .+ ...++..+...|.+.|++++|+..|++.... +..+. ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 7888888988 999999999998765310 11 1467888999999999999999999998763 21111 235
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+..+..++...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6677778888899999999999988
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-06 Score=74.04 Aligned_cols=165 Identities=10% Similarity=-0.006 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--HH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN-----VTTFTILVNSLCKSGRLKEALEVLDQMGRIGC---KPN--IQ 191 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 191 (479)
.+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455566666777777776666655421111 01223344455556666666666666553211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCC-CH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKN---D-GLKP--DVYTYTAVMDGFCKVGRSNEAMELLNEAIERG----VTP-NV 260 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 260 (479)
+++.+...|...|++++|+..+++..+ . +..+ ...++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 566666666666666666666666542 1 1111 11355566666666666666666666654321 000 13
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHH
Q 011714 261 VTFNTLFNGYCKEGTPMKG-VGLLKLM 286 (479)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 286 (479)
.+|..+..+|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555666666666666 4444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-07 Score=69.52 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 355666666777777777777777777766543 3456666666666667777777777777666543 33556666666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
.++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 66666777777777766666542 22334444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-06 Score=74.94 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CCC--
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN-----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY---HPN-- 154 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 154 (479)
...+...+..+...|++++|++.+.+..+...... ...+..+...+...|++++|...+++...... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677888999999999999998876542211 12344566777888999999999999875321 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGR---I-GCKP--NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP- 223 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 223 (479)
..+++.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|+..+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45889999999999999999999998873 2 1111 1258889999999999999999999987653 1111
Q ss_pred CHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 011714 224 DVYTYTAVMDGFCKVGRSNEA-MELLNEAIE 253 (479)
Q Consensus 224 ~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 253 (479)
-..+|..+..+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167788999999999999999 777877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=7.5e-07 Score=70.89 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLC 201 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (479)
.+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44455555566666666666666665542 2345555556666666666666666666655543 334555555555566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKNDGLKPDVYTYT--AVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~~ 251 (479)
..|++++|...+++..+.... +...+. ..+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666555543221 233332 2222244455555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-07 Score=68.43 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34555666666666777777777777666543 3455566666666666666766666666666543 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGR 205 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 205 (479)
++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666666665543 3345555555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.4e-08 Score=84.45 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555666666666677777777776666543 3355666666666666666666666666666543 334556666666
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 011714 164 SLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~ 183 (479)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.4e-07 Score=70.28 Aligned_cols=99 Identities=16% Similarity=0.069 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|++..+.. |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34556666666777777777777777766654 4456666667777777777777777777766553 335566666667
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=65.55 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 33334444444444444444444443322 2233334444444444444444444444443321 113333444444444
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIE 253 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=74.46 Aligned_cols=187 Identities=11% Similarity=-0.021 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCC---------------
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIM-------IRCYCNKNDFFEARKVIDCMFDNGYHPN--------------- 154 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 154 (479)
..++...|.+.|.++.... +-....|..+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777654 4446666666 3444444444554444444332 1111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H
Q 011714 155 -------VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--V 225 (479)
Q Consensus 155 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 225 (479)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345556666777777777776666543 333344555556666777777777776443321 111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN--VVTFNTLFNGYCKEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 289 (479)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455556666666666666666666654322132 224445555666666666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-07 Score=75.80 Aligned_cols=133 Identities=12% Similarity=-0.026 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN----GY-HPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-- 188 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-- 188 (479)
..++..+...+...|++++|...+++.... +. +....++..+...+...|++++|.+.+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444444555555555544444321 00 112233444445555555555555555444321 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 189 NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLK-PDVYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
...++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1223444444555555555555555444321 100 001223444445555555555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.8e-07 Score=80.71 Aligned_cols=196 Identities=11% Similarity=-0.010 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMD 233 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 233 (479)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34555566666666666666666666666543 33556666666666666777777666666665432 24556666666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRP 313 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (479)
++...|++++|...|+.+.+.... +...+...+....+. .++.. +........+.+......+. .+ ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence 677777777777777666553110 000111111111110 11111 11122222223333332222 22 2567777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHh
Q 011714 314 AVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK 363 (479)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 363 (479)
|.+.++...+. .|+......-+..... ...+.++++..+|..+.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~---~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEA---KHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHH---HHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHH---HHHHHHHHHHHHHHhhhc
Confidence 77777666543 4444333333333221 123566777777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-06 Score=66.17 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK 237 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 237 (479)
+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443332 2233344444444444444444444444443321 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011714 238 VGRSNEAMELLNEAIE 253 (479)
Q Consensus 238 ~~~~~~a~~~~~~~~~ 253 (479)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-07 Score=75.30 Aligned_cols=157 Identities=8% Similarity=-0.073 Sum_probs=116.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCC
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS----YGLA-PNSWTFSIMIRCYCNKND 135 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~ 135 (479)
+..|++++|..+++.+.. +.......+..+...+...|++++|+..+++... .+.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888999986655543 3334678899999999999999999999999765 2212 235678888899999999
Q ss_pred hhhHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCC--HHHHHHHHHHHHhcC
Q 011714 136 FFEARKVIDCMFDN----GYH--PNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG---CKPN--IQTYNCLLKGLCYVG 204 (479)
Q Consensus 136 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 204 (479)
+++|.+.+++..+. +-. .....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987643 211 124567888899999999999999999876421 0111 234678888999999
Q ss_pred CHHHHHHHHHHHHH
Q 011714 205 RVEEAYEMLMNVKN 218 (479)
Q Consensus 205 ~~~~a~~~~~~~~~ 218 (479)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-07 Score=67.19 Aligned_cols=95 Identities=11% Similarity=0.043 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|+..+++..+... .+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 34444444444444444444444443332 22333444444444444444444444444433221 13334444444444
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIE 253 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~ 253 (479)
..|++++|...|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-07 Score=74.16 Aligned_cols=121 Identities=10% Similarity=0.178 Sum_probs=88.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH-HHhcCCh--hh
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRC-YCNKNDF--FE 138 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 138 (479)
..++.++|+..++...+.+.. +...|..+...+...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356677788888777665543 67788888888888888888888888877654 4466677777777 6777887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 139 ARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
|...++...+.. +.+...+..+..++...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888887664 3456777778888888888888888888877653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=74.09 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS-LCKSGRL--KE 173 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 173 (479)
..|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777766554 4566677777777777777777777777776653 3356666666666 6677776 77
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 174 ALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777653 345666777777777777777777777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.9e-05 Score=65.73 Aligned_cols=130 Identities=9% Similarity=0.040 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--
Q 011714 67 KERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE----------QETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-- 134 (479)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 134 (479)
++|+.+++.+...++. +..+|+.=-..+...+. +++++.+++.+.... +.+..+|+.-..++...+
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence 3555555555554433 44444443333322222 344455555544432 334444444444444444
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR-LKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
++++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++++.+.. +-|..+|+.....+
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll 189 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 189 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 2445555555555443 2344444444444444444 345555555554443 33444444443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-07 Score=72.19 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
..|..+..++...|++++|++.|++..
T Consensus 56 ~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 56 RFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=74.94 Aligned_cols=197 Identities=10% Similarity=0.020 Sum_probs=147.2
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 011714 62 KASPLKERIDIFDSIKKDGTNWSVSDFNDL-------LMALVMLNEQETAVKFFSEASSYGLAPN--------------- 119 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 119 (479)
..++...|++.|..+.+.++. ....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 568889999999999988766 77888887 5677776666777666665553 2222
Q ss_pred -------HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--H
Q 011714 120 -------SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN--I 190 (479)
Q Consensus 120 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 190 (479)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456778889999999999999988654 443366667778999999999999998665432 121 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTL 266 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (479)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 4678889999999999999999999985433243 4466677888999999999999999998864 444334333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=64.08 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP--SRTSYDML 446 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 446 (479)
+...+..+...+...|++++|+..++++.+... .+...+..+..++...|++++|+..+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 456788889999999999999999999987643 357788889999999999999999999999875 44 67889999
Q ss_pred HHHHhcc-CCHhHHHHHHHHHHhCCCC
Q 011714 447 ITKLDQL-EKSYDACALYGAALKQGVI 472 (479)
Q Consensus 447 ~~~~~~~-g~~~~A~~~~~~~~~~~~~ 472 (479)
..++... |++++|.+.++++++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999999886543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-07 Score=71.48 Aligned_cols=86 Identities=12% Similarity=-0.027 Sum_probs=48.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|+.....++. +...|..+..++...|++++|+..|+++..... .+...+..+..++...|++++|+.
T Consensus 30 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHH
Confidence 445666666666655554433 445555555666666666666666666555422 234445555555666666666666
Q ss_pred HHHHHHhC
Q 011714 427 LLFLMYEH 434 (479)
Q Consensus 427 ~~~~~~~~ 434 (479)
.|++..+.
T Consensus 108 ~~~~al~~ 115 (142)
T 2xcb_A 108 GFYSARAL 115 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=78.62 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN---------------SWTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
+...+..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..++.+.|++++|+..++..++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566777777777777777777777776543 112 24455555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
.. +.+...|..+..+|...|++++|+..|++..+.. +.+..++..+..++.+.|+.+++
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 2244455555555555555555555555554442 22344444444555555544444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-06 Score=62.47 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
+..+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4455666666666777777777777666543 3355566666666666666666666666666543 2345566666666
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=66.37 Aligned_cols=96 Identities=13% Similarity=-0.060 Sum_probs=60.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
.|..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 45555666666666666666666666542 2245566666666666666666666666666654 335556666666666
Q ss_pred ccCCHhHHHHHHHHHHhC
Q 011714 452 QLEKSYDACALYGAALKQ 469 (479)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~ 469 (479)
..|++++|...|+++++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-05 Score=66.41 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR-SNEAMELL 248 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~ 248 (479)
++++.+++.+.... +-+..+|+.-.-.+.+.+ .+++++.+++.+.+.... +..+|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 334444444444444444 244555555555444322 44444444444444444 34555555
Q ss_pred HHHHHCCCCCCHhhHHHHHHHH
Q 011714 249 NEAIERGVTPNVVTFNTLFNGY 270 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~ 270 (479)
+.+++..+. |...|+.....+
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHH
Confidence 555544332 444444443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=63.95 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4456666667777777777777777766554 4456667777777777777777777777766653 3356666667777
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 011714 165 LCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~ 184 (479)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=77.10 Aligned_cols=87 Identities=8% Similarity=-0.130 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 011714 191 QTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGY 270 (479)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (479)
.+|..+..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|...|+++++.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444555555555555555555555544321 13444555555555555555555555555544221 344445555555
Q ss_pred HhcCChhhH
Q 011714 271 CKEGTPMKG 279 (479)
Q Consensus 271 ~~~g~~~~a 279 (479)
.+.|+.+++
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.2e-07 Score=68.30 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=68.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK--IPS----RTSYD 444 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 444 (479)
..+..++..+.+.|++++|++.|+++++... .+...|..+..+|...|++++|+..+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456677777778888888888887776532 2466677777778888888888888877776431 111 13566
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCC
Q 011714 445 MLITKLDQLEKSYDACALYGAALKQG 470 (479)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (479)
.++.++...|++++|++.|+++++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 67777777888888888888777643
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-06 Score=63.92 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCC----HHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPN----VTTFT 159 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 159 (479)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.++..++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445666777777777777777777776654 44566677777777777777777777776654311 111 12455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666666666666666665553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-06 Score=68.71 Aligned_cols=98 Identities=8% Similarity=-0.039 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
..+..+...+. ..|++++|...|++.....+. +...|..+..+|...|++++|+..++++++... .+...|..
T Consensus 12 ~~~~~~g~~~~-----~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 84 (164)
T 3sz7_A 12 DKLKSEGNAAM-----ARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 34444444444 668888888888888776554 667788888888888888888888888877532 24667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+..++...|++++|+..|++.++..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888887764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.2e-06 Score=76.35 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCH---HHHHHHHHHHhcccchhhccHHHHHHHHHHHHh----CCCCC-
Q 011714 298 YSTLLNGLLKWGKIRPAVSIFKEMVRFGFE-VDE---RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTK----KVSVT- 368 (479)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~- 368 (479)
+..+...|...|++++|.+.+..+.+.-.. ++. ......+..+. ...|+.+.+..+++.... .+..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFE----QVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHC----SCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 455667777777777777777765532111 111 12222233332 245777888877776543 22221
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--CC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--C-CC-C
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEM--GH--IP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHA--K-IP-S 439 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~ 439 (479)
-..++..++..+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... . .| .
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 2356777888888999999999988887643 11 11 23467788888889999999998888776431 1 11 1
Q ss_pred --HhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 440 --RTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 440 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+..++..+...|++++|...|..+.+
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24456667777888899998888877765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-06 Score=59.94 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=52.5
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555555666666666666555442 2345555555555555566666666555555442 23444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011714 201 CYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~ 219 (479)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-06 Score=64.69 Aligned_cols=98 Identities=17% Similarity=-0.035 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+...+..+...+...|++++|+..|++++.... .+...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 344555555566666666666666666555421 234555555556666666666666666665543 334555555666
Q ss_pred HHhccCCHhHHHHHHHHHHh
Q 011714 449 KLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~ 468 (479)
+|...|++++|...|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-06 Score=66.72 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|+...... +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34445556666777777777777777776654 4466667777777777777777777777777654 345666667777
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=65.08 Aligned_cols=97 Identities=12% Similarity=-0.083 Sum_probs=83.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 011714 372 TYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLD 451 (479)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (479)
.+..+...+.+.|++++|+..++++++... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 466677888999999999999999998632 367788899999999999999999999999886 447788999999999
Q ss_pred ccCCHhHHHHHHHHHHhCC
Q 011714 452 QLEKSYDACALYGAALKQG 470 (479)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~ 470 (479)
..|++++|...++++++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-06 Score=68.90 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNS----------------WTFSIMIRCYCNKNDFFEARKVIDCMFD 148 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (479)
...+..+...+...|++++|+..|++..+.. +.+. ..+..+..++...|++++|...++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888877643 1121 4555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011714 149 NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEA 209 (479)
Q Consensus 149 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 209 (479)
.. +.+...+..+..++...|++++|.+.|++..+.. +.+..++..+..++...++..++
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 42 2344555555555555555555555555555442 22344444444444444443333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-06 Score=61.35 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHP--NVTTFTILV 162 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li 162 (479)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555566666666666666666655543 3345555556666666666666666666665542 22 355555555
Q ss_pred HHHHhc-CChHHHHHHHHHHhhC
Q 011714 163 NSLCKS-GRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~-g~~~~a~~~~~~~~~~ 184 (479)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 566666 6666666666665544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-06 Score=64.43 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCC----HHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGY--HPN----VTTF 158 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 158 (479)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++....... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456666677777777777777777766543 44566666677777777777777777776664321 111 5556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
..+..++...|++++|.+.|++..+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66666666667777777766666654 2344444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=64.20 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
.+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356667777777777777777777777776654 4456677777777777777777777777777653 33566777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-06 Score=66.11 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+...|..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566777777777777777777777776654 4456677777777777777777777777777653 335666777777
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 011714 164 SLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-05 Score=61.77 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPN----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTF 158 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (479)
.+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667777888888888888888888888765 344 5677777778888888888888888777653 3356777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 159 TILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 159 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
..+..++...|++++|...|++..+.. +.+...+..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 777777888888888888888777653 2234444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-06 Score=68.47 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKL 450 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (479)
..|..+..++...|++++|+..++++++.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 578888999999999999999999998863 3367788899999999999999999999999875 44778888888888
Q ss_pred hccCCHhHHH-HHHHHHHhCCCCCCC
Q 011714 451 DQLEKSYDAC-ALYGAALKQGVIPQR 475 (479)
Q Consensus 451 ~~~g~~~~A~-~~~~~~~~~~~~p~~ 475 (479)
...++..++. ..+..+...|...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~~~ 192 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDKGPLYEE 192 (198)
T ss_dssp HHHHHHHC------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhc
Confidence 8888888887 677777776654443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=60.65 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
..+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|+..+++..+... .+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 33444444444444444444444444433 122 33344444444444444444444444433211 123344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 011714 232 MDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 232 i~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..++...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.5e-06 Score=61.92 Aligned_cols=94 Identities=10% Similarity=-0.055 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK 167 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 167 (479)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444455555666666666666655543 3345555555666666666666666666655543 2245555555556666
Q ss_pred cCChHHHHHHHHHHhh
Q 011714 168 SGRLKEALEVLDQMGR 183 (479)
Q Consensus 168 ~g~~~~a~~~~~~~~~ 183 (479)
.|++++|+..+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=6.9e-06 Score=62.03 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGC--KPN----IQTYN 194 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 194 (479)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666665543 33455566666666666666666666666554320 111 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
.+...+...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555666665555555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=7.1e-05 Score=69.93 Aligned_cols=201 Identities=9% Similarity=0.029 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTNWS----------------VSDFNDLLMALVMLNEQETAVKFFSEASSYG- 115 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~- 115 (479)
.+...-..++.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33444456778999999999988875443211 1246778888999999999998888765321
Q ss_pred CCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--
Q 011714 116 LAPNS----WTFSIMIRCYCNKNDFFEARKVIDCMFD----NGYHP-NVTTFTILVNSLCKSGRLKEALEVLDQMGRI-- 184 (479)
Q Consensus 116 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-- 184 (479)
..++. .+.+.+...+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..+++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 01111 1223333444456788888888877653 22222 2456777888888888888888888876542
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 185 --GC-KPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 185 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
+- +....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 112457778888888888888888888776542 11111 24455666667778888888887776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-06 Score=63.06 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC------c-----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIP------R-----TITFNNVIQALCGEGKIDKALLLLFLMYEH------- 434 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 434 (479)
+......+...|++++|+..|+++++..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4556666777888888888888877653220 1 227888888888899999999888888876
Q ss_pred CCCCCHhhH----HHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 435 AKIPSRTSY----DMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 435 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
. +.+...| .....++...|++++|+..|+++++.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3355677 88888999999999999999998873
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=59.87 Aligned_cols=86 Identities=13% Similarity=0.019 Sum_probs=43.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHcCCC
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDP---GTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPR---TITFNNVIQALCGEGK 420 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 420 (479)
..|++++|...|+.+....+. +. ..+..+..++...|++++|+..++++.+.... + ...+..+..++...|+
T Consensus 14 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~ 91 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGK 91 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCC
Confidence 445555555555555543332 12 34445555555555555555555555543211 1 3344455555555555
Q ss_pred HHHHHHHHHHHHhC
Q 011714 421 IDKALLLLFLMYEH 434 (479)
Q Consensus 421 ~~~a~~~~~~~~~~ 434 (479)
+++|+..|+++.+.
T Consensus 92 ~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 92 NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=79.83 Aligned_cols=115 Identities=13% Similarity=-0.025 Sum_probs=92.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALL 426 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 426 (479)
..|++++|...|++..+..+. +...|..+..++.+.|++++|++.++++.+... .+...+..+..+|...|++++|++
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 668999999999998887554 678899999999999999999999999998632 357788899999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHH--HhccCCHhHHHHHHH
Q 011714 427 LLFLMYEHAKIPSRTSYDMLITK--LDQLEKSYDACALYG 464 (479)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 464 (479)
.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998875 3345566666666 888899999999988
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=57.82 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHH
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNS---WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN---VTTFTILV 162 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 162 (479)
..+...+...|++++|+..|+++.+.. +.+. ..+..+..++...|++++|...++...+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345555666677777777777666542 2222 355566666666677777776666666543 222 44556666
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 011714 163 NSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-06 Score=63.68 Aligned_cols=88 Identities=14% Similarity=-0.005 Sum_probs=65.3
Q ss_pred hhccHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVS--VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKA 424 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 424 (479)
..|++++|+..|++..+.+. ..+...+..+..++...|++++|+..++++++.... +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35788888888888887631 124567888888888999999999999988876432 567788888888889999999
Q ss_pred HHHHHHHHhCC
Q 011714 425 LLLLFLMYEHA 435 (479)
Q Consensus 425 ~~~~~~~~~~~ 435 (479)
+..+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99988888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=83.08 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334445567788888888888887654 4457788888888888888888888888888764 44677888888888888
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKG--LCYVGRVEEAYEMLM 214 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 214 (479)
|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888887653 2233445555444 777788888888877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=63.61 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=54.4
Q ss_pred hhccHHHHHHHHHHHHhC--------CC---------CCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKK--------VS---------VTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFN 409 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 409 (479)
+.|++++|...|...... .+ ..+...|..+..+|.+.|++++|+..++++++.. +.+...|.
T Consensus 23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 101 (162)
T 3rkv_A 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALF 101 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHH
Confidence 557777777777766543 00 0022456666666777777777777777766643 22455666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 410 NVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 410 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.+..++...|++++|+..|++..+..
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 66667777777777777777766653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=63.33 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVLDQMGRI----GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLK-PDVYT 227 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 227 (479)
+..+...+...|++++|.+.+++..+. +.++ ...++..+...+...|++++|...+++..+. +.. .....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 344444444445555544444443321 0000 0223344444444555555555544443321 100 01223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 228 YTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 228 ~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+..+...+...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444555555555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=9e-05 Score=56.66 Aligned_cols=114 Identities=13% Similarity=0.009 Sum_probs=96.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKID 422 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 422 (479)
-.+++++|...|++..+.+.. ... +...|...+..++|+++|++..+.| +...+..+...|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEM---FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT---THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCCCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 347889999999998887632 333 7788888888999999999998864 66778888888887 89999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCC
Q 011714 423 KALLLLFLMYEHAKIPSRTSYDMLITKLDQ----LEKSYDACALYGAALKQGV 471 (479)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 471 (479)
+|+.+|++..+.+ +...+..|...|.. .++.++|.++|+++.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999999886 67888889999988 8999999999999999875
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=62.39 Aligned_cols=134 Identities=12% Similarity=0.015 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCC-C
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLA-PN----SWTFSIMIRCYCNKNDFFEARKVIDCMFDNG----YHP-N 154 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 154 (479)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.. .++ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888889999999999999987643101 11 2467888889999999999999999876431 111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQMGRI----GCK-PNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
..++..+..++...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888899999999999999887643 211 1235677888899999999999999988764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-05 Score=70.82 Aligned_cols=138 Identities=11% Similarity=0.017 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..+..+...+.+.|++++|+..|++..+.- +... .... .+..... -+.+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHH-HHHHHHHHHHHHHHH
Confidence 346667777778888888888888776410 0000 0000 0000001 012344555555555
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAM 245 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 245 (479)
.+.|++++|++.+++..+.. +.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665555555543 23455555555555666666666666655554421 13444555555555555544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=73.04 Aligned_cols=138 Identities=12% Similarity=-0.040 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...|..+...+.+.|++++|+..|+++.+.. +.+. .+ .-+... ... +.....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~-~~-----------~~~~~~----~~~----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEY-GL-----------SEKESK----ASE----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCC-SC-----------CHHHHH----HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccc-cC-----------ChHHHH----HHH----HHHHHHHHHHHHH
Confidence 4556667777777777777777777766532 1110 00 000000 000 0013445555555
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEA 244 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 244 (479)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++.+.++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 33455555555555555555555555555554321 1334455555555555555544
Q ss_pred H
Q 011714 245 M 245 (479)
Q Consensus 245 ~ 245 (479)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-05 Score=60.78 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC----------CCCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSY-------GL----------APNSWTFSIMIRCYCNKNDFFEARKVIDCM 146 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (479)
.+..+......+.+.|++++|+..|.+.... .- +.+...|..+..+|.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888888899999999999887653 00 112244555555555556666666655555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 011714 147 FDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 147 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
++.. +.+...|..+..++...|++++|...|++..+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5443 334555555555555555666555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00015 Score=69.77 Aligned_cols=174 Identities=9% Similarity=0.010 Sum_probs=108.2
Q ss_pred hcCC-hhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 011714 62 KASP-LKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNE----------QETAVKFFSEASSYGLAPNSWTFSIMIRCY 130 (479)
Q Consensus 62 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (479)
+.+. .++|+..++.+...++. +..+|+.--..+...|+ +++++..++.+.+.. +.+..+|+.-.-++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 36677778777776655 66677766666666665 777777777777654 55666777766666
Q ss_pred HhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----
Q 011714 131 CNKN--DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG-RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV---- 203 (479)
Q Consensus 131 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 203 (479)
.+.+ +++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.++++.+.. +-+..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 6777 5577777777777664 346667766666666666 6777777777777654 44666666666655542
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 011714 204 ----------GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR 240 (479)
Q Consensus 204 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 240 (479)
+.++++++.+++.....+. +...|..+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3345555555555543222 44455544444444444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00021 Score=68.92 Aligned_cols=174 Identities=6% Similarity=-0.043 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND----------FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSG 169 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 169 (479)
..++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3468899999998765 5566778777777766666 899999999999875 458888888888888888
Q ss_pred --ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc--------
Q 011714 170 --RLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG-RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-------- 238 (479)
Q Consensus 170 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 238 (479)
+++++++.++++.+.. +-+..+|+....++.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999999876 568889998888888888 899999999999887644 788888777766653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhh
Q 011714 239 ------GRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMK 278 (479)
Q Consensus 239 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (479)
+.++++++.++.++..... +...|.-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578888999888876433 67778877777777776443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.6e-05 Score=71.10 Aligned_cols=132 Identities=9% Similarity=-0.075 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 154 NVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPN---------------IQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 154 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
....|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..+++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45555556666666666666666666655432 111 57889999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH-HHHHHHh
Q 011714 219 DGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG-LLKLMKK 288 (479)
Q Consensus 219 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 288 (479)
... .+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.++.+++.+ ++..|..
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 753 37888999999999999999999999999987433 66788889999999998887764 4555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-05 Score=68.72 Aligned_cols=121 Identities=11% Similarity=-0.000 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRI---------------GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGL 221 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 221 (479)
.+..+...+.+.|++++|++.|++..+. -.+.+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4556666777777777777777766641 0012334555555666666666666666666655432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011714 222 KPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKG 279 (479)
Q Consensus 222 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 279 (479)
.+...+..+..+|...|++++|+..|+++.+.... +...+..+..++...++.+++
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 24555555556666666666666666665554221 344444444444444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=58.86 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNV 216 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 216 (479)
.+..+..+|...|++++|+..|++..+.. +-+..++..+..++...|++++|+..+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444443332 222333334444444444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=54.97 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 011714 100 EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCK----SGRLKEAL 175 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 175 (479)
++++|++.|++..+.| .+... +...|...+.+++|.+.|++..+.| +...+..|..+|.. .++.++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 22222 3344444444444555555554432 34444444444444 44455555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 011714 176 EVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKND 219 (479)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 219 (479)
++|++..+.| +...+..|...|.. .+++++|.++|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555544433 33344444444444 44444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-05 Score=69.99 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345667777778888888888888887754 333221 11222222222211 11366677777
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHH
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG-FCKVGRSNE 243 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~ 243 (479)
|.+.|++++|+..+++..+.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777654 446677777778888888888888888777654221 33444444444 233455666
Q ss_pred HHHHHHHHHHC
Q 011714 244 AMELLNEAIER 254 (479)
Q Consensus 244 a~~~~~~~~~~ 254 (479)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-05 Score=58.60 Aligned_cols=95 Identities=12% Similarity=-0.063 Sum_probs=74.7
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------Hhh
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPS------RTS 442 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 442 (479)
+...+..+...+...|++++|++.++++++.. +.+...+..+..++...|++++|+..+++.++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 44567888899999999999999999998863 2367788899999999999999999999999875 223 556
Q ss_pred HHHHHHHHhccCCHhHHHHHHHH
Q 011714 443 YDMLITKLDQLEKSYDACALYGA 465 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~ 465 (479)
+..+..++...|+.++|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 66777777777777766655443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-05 Score=68.47 Aligned_cols=148 Identities=14% Similarity=0.009 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGF 235 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 235 (479)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666666777777777777776654 233221 112222222222111 12455666666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHH-HHhcCChHHH
Q 011714 236 CKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNG-LLKWGKIRPA 314 (479)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 314 (479)
.+.|++++|+..++..++... .+...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666666432 25556666666677777777777776666554211 23333333333 2233455566
Q ss_pred HHHHHHHHHc
Q 011714 315 VSIFKEMVRF 324 (479)
Q Consensus 315 ~~~~~~~~~~ 324 (479)
...|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 6666666543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00025 Score=54.75 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC-------CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRI-------GCKPNIQTY----NCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
.|..+..++.+.|++++|+..+++.++. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555556655555555555443 2 2233344 5555555555555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=55.95 Aligned_cols=121 Identities=18% Similarity=0.090 Sum_probs=91.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCH----------HHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKT----------DEALIHLHHAIEMGHIPRTITFNNVIQALC 416 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 416 (479)
+.+.+++|...++...+.++. +...|..+..++...+++ ++|+..|+++++.... +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 567889999999999988766 788898888888888764 5999999999986432 5678999999998
Q ss_pred cCC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCCCC
Q 011714 417 GEG-----------KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQRKP 477 (479)
Q Consensus 417 ~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 477 (479)
..| ++++|+..|+++++.. |+...|...+.. .++|.+++-..-..+..-+.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~------~~ka~el~~~~~~~~~~~~~~~ 155 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM------TAKAPQLHAEAYKQGLGGSHHH 155 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH------HHTHHHHHHHHHHSSSCSCCCS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH------HHhCHhccCcccccccCccccc
Confidence 764 8999999999999874 665555544443 3455666666666665554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=2e-05 Score=57.49 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPN------VTT 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 157 (479)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45566667777777777777777777776653 4456667777777777777777777777776543 112 344
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 011714 158 FTILVNSLCKSGRLKEALEVL 178 (479)
Q Consensus 158 ~~~li~~~~~~g~~~~a~~~~ 178 (479)
+..+..++...|+.+.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555544444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00019 Score=49.95 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567778888899999999999999988763 2356778888889999999999999999988875 4466777777777
Q ss_pred HhccC
Q 011714 450 LDQLE 454 (479)
Q Consensus 450 ~~~~g 454 (479)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 66543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00021 Score=52.46 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011714 353 DAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMY 432 (479)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 432 (479)
.+...|+......+. +...+..+..++...|++++|+..++++++... .+...|..+..++...|++++|+..|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888776654 678888999999999999999999999987642 356778888899999999999999999888
Q ss_pred hC
Q 011714 433 EH 434 (479)
Q Consensus 433 ~~ 434 (479)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=67.22 Aligned_cols=60 Identities=5% Similarity=-0.128 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 262 TFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC-LPD-KISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 262 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
+++.|...|...|++++|..++++..+. |. .|+ ..+++.|...|...|++++|..++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444445544444444443221 11 111 233444555555555555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=68.96 Aligned_cols=122 Identities=9% Similarity=-0.001 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHHHHC---CCC---C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHH
Q 011714 202 YVGRVEEAYEMLMNVKND---GLK---P-DVYTYTAVMDGFCKVGRSNEAMELLNEAIER-----GV-TPN-VVTFNTLF 267 (479)
Q Consensus 202 ~~~~~~~a~~~~~~~~~~---~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~ 267 (479)
..|++++|+.++++.++. -+. | ...+++.|...|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 556666666666655432 111 1 2445666666677777777776666665432 21 122 34566667
Q ss_pred HHHHhcCChhhHHHHHHHHHh-----CCCC-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 268 NGYCKEGTPMKGVGLLKLMKK-----RNCL-PD-KISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 268 ~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
..|...|++++|..++++..+ .|.. |+ ..+...+..++...+.+++|..+|..+.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776666543 2321 22 23345555666667777777777777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00035 Score=48.48 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655443 3344555555555555566666655555555432 2234444444444
Q ss_pred HH
Q 011714 165 LC 166 (479)
Q Consensus 165 ~~ 166 (479)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00035 Score=51.23 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
|+..|+...+.++. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|+...
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444443322 44555555555555555555555555554432 2334445555555555555555555555444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00026 Score=50.46 Aligned_cols=82 Identities=16% Similarity=0.009 Sum_probs=61.5
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHH
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK-IPSRTSYDMLI 447 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 447 (479)
+...+..+..++...|++++|++.|+++++.... +...|..+..+|...|++++|+..+++.++... .++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 5677888999999999999999999999886432 566788899999999999999999998876421 22344444444
Q ss_pred HHHh
Q 011714 448 TKLD 451 (479)
Q Consensus 448 ~~~~ 451 (479)
..+.
T Consensus 85 ~~l~ 88 (100)
T 3ma5_A 85 DAKL 88 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=54.76 Aligned_cols=84 Identities=8% Similarity=-0.112 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 99 NEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDF----------FEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 99 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 34445555555544443 33444454444444444433 35555555555442 22344555555555444
Q ss_pred -----------CChHHHHHHHHHHhhC
Q 011714 169 -----------GRLKEALEVLDQMGRI 184 (479)
Q Consensus 169 -----------g~~~~a~~~~~~~~~~ 184 (479)
|++++|++.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 3556666666655554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00035 Score=49.83 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 405 TITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 405 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+..+..++...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.|+++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444455555555555555555555443 22344445555555555555555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00058 Score=63.08 Aligned_cols=86 Identities=12% Similarity=-0.126 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHc---CCC---Cc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHH
Q 011714 383 GKKTDEALIHLHHAIEM---GHI---PR-TITFNNVIQALCGEGKIDKALLLLFLMYEH-----AK-IPSR-TSYDMLIT 448 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~ 448 (479)
.|++++|+.++++.++. -+. |+ ..+++.+..+|...|++++|+.+++++++. |. .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777666665542 111 11 245666777777777777777777666531 21 2222 34666777
Q ss_pred HHhccCCHhHHHHHHHHHHh
Q 011714 449 KLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~ 468 (479)
.|..+|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0092 Score=52.96 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---C--ChhhH---HHHHHHHHh
Q 011714 82 NWSVSDFNDLLMALVM--LN---EQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNK---N--DFFEA---RKVIDCMFD 148 (479)
Q Consensus 82 ~~~~~~~~~ll~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~~a---~~~~~~~~~ 148 (479)
+.+...|...+++... .+ +..+|+.+|++..+.. |-....|..+..+|... + .-... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4467777777765543 22 3467888888887663 33345555444444310 0 00000 001111000
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 149 -NGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 149 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0113344444444444444455555555555555442 4444444444445555555555555554444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0027 Score=56.35 Aligned_cols=147 Identities=10% Similarity=0.025 Sum_probs=75.1
Q ss_pred CCCHhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHhccc-ch--hhccHHHHHHHHHHHH
Q 011714 292 LPDKISYSTLLNGLL--KWGK---IRPAVSIFKEMVRFGFEVDE-RMMNSLLRGLCMKS-WE--EKDLLEDAYQVFEKMT 362 (479)
Q Consensus 292 ~~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~--~~~~~~~a~~~~~~~~ 362 (479)
+.+...|...+++.. ..++ ..+|..+|++.++. .|+- ..+..+..++.... .. ...........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445666666665543 2232 45677777777775 4442 33333333332110 00 0011111111222211
Q ss_pred h-CCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh
Q 011714 363 K-KVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRT 441 (479)
Q Consensus 363 ~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 441 (479)
. .....++..|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 1 1112245566666655655677777777777777653 565566666666667777777777777766653 4444
Q ss_pred hHH
Q 011714 442 SYD 444 (479)
Q Consensus 442 ~~~ 444 (479)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00068 Score=48.01 Aligned_cols=83 Identities=17% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTI-TFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLE 454 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (479)
....+...|++++|++.++++.+... .+.. .+..+..++...|++++|+..|++..+.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 45566777888888888888877532 2455 77777788888888888888888888765 223333311 4
Q ss_pred CHhHHHHHHHHHHh
Q 011714 455 KSYDACALYGAALK 468 (479)
Q Consensus 455 ~~~~A~~~~~~~~~ 468 (479)
.+.++...|++..+
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 44555555554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=60.72 Aligned_cols=61 Identities=15% Similarity=0.009 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEH-----AK-IPSR-TSYDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+++.+..+|...|++++|+.+++++++. |. .|+. .+++.|...|..+|++++|..++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444555555555555555555544421 10 1111 234445555555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0061 Score=42.44 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=45.5
Q ss_pred ChhhHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKK---TDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
++..+..+..++...++ .++|..++++++..... +......+...+.+.|++++|+..|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55666667766654443 67888888887775322 45666667777777888888888888877764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.19 Score=42.76 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCH
Q 011714 171 LKEALEVLDQMGRIGCKPN---IQTYNCLLKGLCYV-----GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKV-GRS 241 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 241 (479)
...|...+++..+. .|+ ...|..+...|... |+.++|.++|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666665 344 45677777777763 77777777777777654322355666666666663 777
Q ss_pred HHHHHHHHHHHHCCCC
Q 011714 242 NEAMELLNEAIERGVT 257 (479)
Q Consensus 242 ~~a~~~~~~~~~~~~~ 257 (479)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0042 Score=57.37 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-CCC-HhHHHHHHHH
Q 011714 239 GRSNEAMELLNEAIER-----GV-TPN-VVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-----NC-LPD-KISYSTLLNG 304 (479)
Q Consensus 239 ~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~ 304 (479)
|++++|+.++++.++. |. .|+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11 111 234555666666666666666666555321 21 122 2446666666
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011714 305 LLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~ 322 (479)
|...|++++|..++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0091 Score=45.41 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=68.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK---KTDEALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 421 (479)
..+.+..+.+-|.+....+. ++..+.-.+..++++.+ +.++++.+++...+.. .| +...+-.+.-+|.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 44677888888888777655 47788888888999988 6679999999988864 24 345556666788999999
Q ss_pred HHHHHHHHHHHhCC
Q 011714 422 DKALLLLFLMYEHA 435 (479)
Q Consensus 422 ~~a~~~~~~~~~~~ 435 (479)
++|+++++.+.+..
T Consensus 88 ~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 88 EKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.054 Score=54.91 Aligned_cols=129 Identities=18% Similarity=0.129 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
..++..+.+.|..++|.++.++-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555556666666555442110 0122334556666666664332 2455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLL 283 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 283 (479)
++++.|.+.|..+.. |..+...+...|+.+...++.+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665532 22333344445555554444444433321 223333444455555555554
Q ss_pred HH
Q 011714 284 KL 285 (479)
Q Consensus 284 ~~ 285 (479)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.01 Score=54.78 Aligned_cols=89 Identities=7% Similarity=0.011 Sum_probs=52.4
Q ss_pred HHHccCCHHHHHHHHHHHHHCC---CCC----CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HhHHH
Q 011714 234 GFCKVGRSNEAMELLNEAIERG---VTP----NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR-----N-CLPD-KISYS 299 (479)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 299 (479)
.+...|++++|+.++++.++.. ..| ...+++.+...|...|++++|+.++++.... | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445566677777766665431 111 2345666666777777777777766665431 2 1122 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMV 322 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~ 322 (479)
.|...|...|++++|..++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 67777777777777777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.053 Score=54.95 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=101.4
Q ss_pred HHHHHHhcCChhhHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 56 RFVDRIKASPLKERID-IFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 56 ~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+-..+..++.++|.. ++..+. +......++..+.+.|..+.|+++.+. . ..-.......|
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~ 666 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVG 666 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHT
T ss_pred HHhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcC
Confidence 3444556777877766 442211 133347888888999999999876632 1 11134456789
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLM 214 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 214 (479)
++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 999999986543 4789999999999999999999999998763 3345555556777766665555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 215 NVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 215 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
.....|. ++....+|.+.|++++|.+++.+
T Consensus 732 ~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 732 DAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544431 22333344455555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.026 Score=39.44 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSW-TFSIMIRCYCNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (479)
....+...|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445666777777777777776653 34455 67777777777777777777777776653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.16 Score=37.30 Aligned_cols=140 Identities=20% Similarity=0.119 Sum_probs=73.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
..-.|..++..++..+.... .+..-++-++.... ..-+-+...++++.+... + |. ...|
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNii-----D~a~C~y~v~vLd~IGki-F--Di----------s~C~ 75 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLL-----ESIDCRYMFQVLDKIGSY-F--DL----------DKCQ 75 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHH-----HHCCHHHHHHHHHHHGGG-S--CG----------GGCS
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecc-----hhhchhHHHHHHHHHhhh-c--Cc----------Hhhh
Confidence 34457777777777776653 23344454444443 334444445555544432 1 11 1223
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
+.......+-.+ .-+.......+......|+.++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 333333332221 123344555556666667766666666665443 25566666667777777777777777777
Q ss_pred HHHhCCC
Q 011714 465 AALKQGV 471 (479)
Q Consensus 465 ~~~~~~~ 471 (479)
++-++|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 7766664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.071 Score=45.36 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=71.7
Q ss_pred hhccHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhc-----CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc-CC
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVT-DPGTYGIVIRTLGK-----GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG-EG 419 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g 419 (479)
..+....|...+++..+.++.- +...|..++..|.. .|+.++|.++|+++++.+..-+..++......++. .|
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3455677888888887765431 24578888888888 49999999999999986432246777777888877 49
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHhh
Q 011714 420 KIDKALLLLFLMYEHAKI--PSRTS 442 (479)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~--~~~~~ 442 (479)
+.+++.+++++.+..... |+...
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhH
Confidence 999999999999987654 55433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.051 Score=37.64 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
++|..++++..+.. +-+..+...+...+.+.|++++|+..|+.+.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444332 22333334444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.025 Score=43.04 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=26.7
Q ss_pred CCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 118 PNSWTFSIMIRCYCNKN---DFFEARKVIDCMFDNGYHP--NVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
++..+...+..++++.+ +++++..+++++.+.+ .| +...+-.|.-++.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3334444444444332 11 122333333344444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.061 Score=38.21 Aligned_cols=67 Identities=7% Similarity=-0.029 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYG------LAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDN 149 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (479)
.++..+..|...+.+.|++..|...|+.+.+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456667777778888888888888887765421 1233556666666666777777777766666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.056 Score=38.39 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMG------HIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+..-+-.++..+...|+++.|...++.+.+.. -.+...++..+..++.+.|+++.|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34456678888999999999999999887541 12356778889999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.28 Score=38.31 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 011714 55 QRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN 134 (479)
Q Consensus 55 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (479)
.+|--.+..|+++.|.++.+.+ -+...|..|.......|+++-|.+.|.+.. -+..+.-.|.-.|
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhC
Confidence 3455566778888887777665 256778888888888888888888777654 2444555555667
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 135 DFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQM 181 (479)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 181 (479)
+.+...++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7666665555544443 1233334444567777777777543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.41 Score=37.39 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011714 155 VTTFTILVNSLCKSGRLKEALEVLDQ 180 (479)
Q Consensus 155 ~~~~~~li~~~~~~g~~~~a~~~~~~ 180 (479)
...|..|.......|+++-|.+.|.+
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444444444444444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.058 Score=40.48 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=54.8
Q ss_pred ChhhHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCCCchH-HHHHHHH------HHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGKKT------DEALIHLHHAIEMGHIPRTI-TFNNVIQ------ALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
|..+|-..+...-+.|+. ++..++|+++... ++|+.. .|...+. .+...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5556666666553 344321 1111110 1123367777777777776543
Q ss_pred CCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC
Q 011714 436 KIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIP 473 (479)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 473 (479)
-.- ...|-....--.++|+...|.+++.+++..+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 5555555555666777777777777777655433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.00014 Score=65.91 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=112.6
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 011714 61 IKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEAR 140 (479)
Q Consensus 61 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (479)
+..+.+.+|++.|-. .-|+..|..++.++.+.|.+++-++.+....+. ..++..=+.|+.+|++.+++.+..
T Consensus 65 L~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 65 LQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELE 136 (624)
T ss_dssp TTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTT
T ss_pred HccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHH
Confidence 455667777665422 236667888999999999999888888766654 334445568888999988877654
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------------------CCCCCHHHHHHHHHHH
Q 011714 141 KVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRI--------------------GCKPNIQTYNCLLKGL 200 (479)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~ 200 (479)
+++. .||..-...+.+-|...|.++.|.-+|..+..- .-..++.||..+-.+|
T Consensus 137 efl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~AC 209 (624)
T 3lvg_A 137 EFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC 209 (624)
T ss_dssp STTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHH
T ss_pred HHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 4332 356555666677777777777776666544210 0023556777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKE 273 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (479)
...+.+.-|.-.--.+.- .+| -...++..|-..|-+++.+.+++..... .......|+.|.-.|++-
T Consensus 210 vd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred hCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 777776655444333321 111 1123344555556666666555555432 122444555555554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.11 Score=38.01 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=54.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCCC--chHHHHHHHHHHHcCCCH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDE---ALIHLHHAIEMGHIP--RTITFNNVIQALCGEGKI 421 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 421 (479)
....+..+.+-|......+. ++..+--.+..++.+...... ++.+++.+...+ .| .....-.+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 34555666666665555444 455666666777777776655 777777776643 12 223334455577788888
Q ss_pred HHHHHHHHHHHhCC
Q 011714 422 DKALLLLFLMYEHA 435 (479)
Q Consensus 422 ~~a~~~~~~~~~~~ 435 (479)
++|+++++.+.+..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.59 Score=34.36 Aligned_cols=67 Identities=21% Similarity=0.247 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
...+...+..+...|+-++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 344555666666777777777777665432 3556666666777777777777777777777766654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.5 Score=35.51 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-hHHHHHHHH------HhcCChhhHHHHHHHHHhCC
Q 011714 84 SVSDFNDLLMALVMLNEQ------ETAVKFFSEASSYGLAPNSW-TFSIMIRCY------CNKNDFFEARKVIDCMFDNG 150 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~ 150 (479)
|.++|-..+..+-+.|+. +..+++|++.... ++|+.. .|...+..+ ...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 566666666666666766 6667777776653 345421 111111111 22356666666666665442
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 011714 151 YHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIG 185 (479)
Q Consensus 151 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 185 (479)
+-=..+|......-.++|++..|.+++.+....+
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2225555555555566666666666666666655
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=3.4 Score=39.91 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHH
Q 011714 310 KIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEA 389 (479)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (479)
+.+.|...+....+.. ..+......+-..++... ...+...++...+....... .+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRL-MGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHH-HHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777765433 223333333333333221 12232334445555443322 2333334444444566888888
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 390 LIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 390 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
...|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887776644211 1233334445566777888888888877764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.19 Score=36.70 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=26.4
Q ss_pred CCHHhHHHHHHHHHhcCChhh---HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 011714 118 PNSWTFSIMIRCYCNKNDFFE---ARKVIDCMFDNGYH-PNVTTFTILVNSLCKSGRLKEALEVLDQMGR 183 (479)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 183 (479)
++..+-..+..++++..+... ++.+++++.+.+.+ ......-.|.-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444444444443333 44444444433200 1122222333344444444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=3.2 Score=38.33 Aligned_cols=190 Identities=14% Similarity=0.066 Sum_probs=117.9
Q ss_pred hcCChhhHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHH----
Q 011714 62 KASPLKERIDIFDSIKK-----DGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASS-YGLAPNSWTFSIMIRCYC---- 131 (479)
Q Consensus 62 ~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~---- 131 (479)
..++++.|++.+-.+.+ .+...+......++..|...|+++...+.+..+.+ +|..+ .....++..+.
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLK 105 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHh
Confidence 44567778777655542 33455778889999999999999998887776654 34222 22334443332
Q ss_pred hcCChhh--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC---HHHHHHHHH
Q 011714 132 NKNDFFE--ARKVIDCMFD--NG-YHP---NVTTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPN---IQTYNCLLK 198 (479)
Q Consensus 132 ~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 198 (479)
.....+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+... |.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2332222 1122221111 11 111 1233456788888999999999999988642 21111 346777788
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 199 GLCYVGRVEEAYEMLMNVKN----DGLKPD--VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 199 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 89999999999998888642 222232 23456667777888899888888877754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.83 E-value=2.7 Score=38.81 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--CCCCc---hHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCH--hh
Q 011714 374 GIVIRTLGKGKKTDEALIHLHHAIEM--GHIPR---TITFNNVIQALCGEGKIDKALLLLFLMYE----HAKIPSR--TS 442 (479)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~--~~ 442 (479)
..+...+...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34455555666666666666655422 11111 12344445556666666666666655432 1111111 23
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHH
Q 011714 443 YDMLITKLDQLEKSYDACALYGAAL 467 (479)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (479)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555566666555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.67 E-value=0.89 Score=31.31 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+.-+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++++-...+. .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444556666666666777888888888888888888888888888776653 233445666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.95 E-value=8.7 Score=38.89 Aligned_cols=255 Identities=10% Similarity=0.061 Sum_probs=115.7
Q ss_pred HHhcCChhhHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHhHHHHHHHH
Q 011714 60 RIKASPLKERIDIFDSIKKDG--TNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGL--A-----PNSWTFSIMIRCY 130 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~-----~~~~~~~~l~~~~ 130 (479)
.+..+..++++.+++.....+ ..+....=..+.-++...|..+++..++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566666666665443311 111222223333444555555566666655443210 0 1111122232333
Q ss_pred HhcCC-hhhHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhc
Q 011714 131 CNKND-FFEARKVIDCMFDNGYHPNVTT--FT--ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYN--CLLKGLCYV 203 (479)
Q Consensus 131 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 203 (479)
+-.|. -+++.+.+..+.... +... .. +|...+.-.|+.+....++..+.+.. +..+.. .+.-++...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33332 234445555544321 2111 11 23333445566666666666555431 222222 333334466
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHH
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTY--TAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 281 (479)
|+.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 77777777777766531 2222111 123335566777766666777766542 2233322333334444566666666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 011714 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKI-RPAVSIFKEMVR 323 (479)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 323 (479)
+++.+...+ .|....-..+.-+....|.. .++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666555543 23333333333334444443 456667766653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.89 E-value=1.2 Score=32.62 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=42.5
Q ss_pred CCCChhhHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 366 SVTDPGTYGIVIRTLGKGKKT---DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
..|+..+--.+..++.+.... .+++.+++.+.+.+..-....+-.+.-++.+.|++++|+++.+.+.+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 344555544555566665543 4577777777765421123444555567777888888888888777653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.39 E-value=2.6 Score=31.39 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=47.8
Q ss_pred CCChhhHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 367 VTDPGTYGIVIRTLGKGKKT---DEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
.|+..+--.+..++.+.... .+++.+++.+...+..-.....-.+.-++.+.|++++|+++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45666655666777776654 5678888888775432233444555668889999999999999888874
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.31 E-value=1.1 Score=44.30 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 011714 299 STLLNGLLKWGK-IRPAVSIFKEMVRF 324 (479)
Q Consensus 299 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 324 (479)
..++..+...++ .+.|..+++++...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh
Confidence 444444445555 35566666666665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.81 Score=45.11 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCC---------CHHHHHHHHHHHH
Q 011714 370 PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEG---------KIDKALLLLFLMY 432 (479)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~ 432 (479)
..=|..++....+.+.+++|.+.|+..+.. +-++..+..|+..|.+.+ +.+..+.+.-++.
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 344777777777788888888888877753 456777788888887765 5565555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.94 Score=41.08 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHhhH
Q 011714 193 YNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE-----RGVTPNVVTF 263 (479)
Q Consensus 193 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 263 (479)
...++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666667777777777776666543 33666777777777777777777777766533 3677766543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.64 E-value=2.1 Score=31.37 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITK 449 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (479)
+.-+..+-+..+...++.|++.+..+.+.+|.+.+|+..|.++|+-...+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344556666777777888999999999999999999999999999887664 3445567776653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.53 E-value=0.0002 Score=64.90 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKG 199 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 199 (479)
+..|..|..+..+.+++.+|++-|- +. -|+..|..++....+.|.+++-+.++...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4467777777777777777665442 21 2666777777777777888877777766655432 33334567777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011714 200 LCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKG 279 (479)
Q Consensus 200 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 279 (479)
|++.++..+..+++ -.|+..-...+.+-|...|.++.|.-+|..+ .-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHH
Confidence 77777766544433 1345555566677777777777776666433 1233344444455555554
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 011714 280 VGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAV 315 (479)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 315 (479)
++.- .+ ..+..||..+-.+|...+++..|.
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHH
Confidence 4321 11 124556666666666665555444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.52 E-value=6.3 Score=41.55 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHH
Q 011714 226 YTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPN----VVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTL 301 (479)
Q Consensus 226 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 301 (479)
.-|..++..+-+.+.++.+.++-..+++.....+ ...|..+...+...|++++|...+-.+.....+ ......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 3455666666677777777766665554321111 124666677777777777777777666554332 4445555
Q ss_pred HHHHHhcCC
Q 011714 302 LNGLLKWGK 310 (479)
Q Consensus 302 ~~~~~~~~~ 310 (479)
+..++..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 555554444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=1.6 Score=39.56 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHH
Q 011714 122 TFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGR-----IGCKPNIQTYNCL 196 (479)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 196 (479)
+...++..+...|+..++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45566777888899999998888887664 56888999999999999999999999988653 5888888764433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.02 E-value=1.5 Score=30.18 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
+.-+.++-++.+...+..|++....+.+++|.+.+++.-|.++++-+... ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 55567777777778888889999999999999999999999999887754 3334456776664
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.98 E-value=2.1 Score=34.07 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 011714 386 TDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIP 438 (479)
Q Consensus 386 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 438 (479)
..++.++|..|...|+-- -+..|......+...|++.+|..+|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555555544332 23345555555555666666666666555554333
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.00 E-value=21 Score=36.19 Aligned_cols=154 Identities=11% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhc
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPG--TYGIVIRTLGK 382 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 382 (479)
+...|+.+....++..+.+. .+..+...+..++... -.|+.+.+..+.+.+... ..|... .-.++..+|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll---~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI---NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH---TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh---hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC
Confidence 34556666666666665543 2333333333333221 224445555555555542 111111 11234456667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCH-hHHHH
Q 011714 383 GKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKS-YDACA 461 (479)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~ 461 (479)
.|+.....++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|+.
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 777766666777776541 2222222222234444566666666665555443 23332222233333333332 45566
Q ss_pred HHHHHH
Q 011714 462 LYGAAL 467 (479)
Q Consensus 462 ~~~~~~ 467 (479)
.+..+.
T Consensus 651 ~L~~L~ 656 (963)
T 4ady_A 651 VLDPLT 656 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.50 E-value=14 Score=33.33 Aligned_cols=30 Identities=3% Similarity=-0.064 Sum_probs=19.2
Q ss_pred HhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC
Q 011714 440 RTSYDMLITKLDQLEKSYDACALYGAALKQGV 471 (479)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (479)
..++..+...+.- ..+++...+-+|+..|.
T Consensus 316 rIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 316 RVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 3445555554433 57788888888887764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.14 E-value=4.4 Score=31.09 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 182 (479)
..--.+..+|.+.+++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333345556666666666666665543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.76 E-value=3.1 Score=30.44 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 011714 350 LLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQ 413 (479)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 413 (479)
+.-+..+-++.+...+..|++......+++|.+.+++.-|.++++-++.. ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44556666777778888899999999999999999999999999887754 3444556776664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.72 E-value=5.7 Score=30.48 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=20.1
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 441 TSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
+.-..+..+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 44455777888999999999988754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.60 E-value=6.3 Score=28.91 Aligned_cols=72 Identities=8% Similarity=-0.097 Sum_probs=44.6
Q ss_pred CCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 011714 326 FEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEM 399 (479)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 399 (479)
..|+..+--.+..++++. ....+...++.+++.+.+.++.-....+-.+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S--~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344554444444444433 244566677777777776543223345556677788888888888888887763
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.81 E-value=17 Score=32.67 Aligned_cols=133 Identities=12% Similarity=-0.009 Sum_probs=68.9
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHHHH-
Q 011714 120 SWTFSIMIRCYCNKNDFFEARKVIDCMFDN-GYHP---NVTTFTILVNSLCKS-GRLKEALEVLDQMGRIGCKPNIQTY- 193 (479)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~- 193 (479)
......|...|.+.|+.++..+++...... +..+ .......+++.+... +..+.-.++..+..+.. .-...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345566777777778777777777665421 0011 233455666666553 23333333333333210 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 194 -----NCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD-----VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 194 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
.-++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+.....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2456667777777777777666655311111 23344455566666777777766666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.87 E-value=19 Score=37.92 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--------------------
Q 011714 195 CLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIER-------------------- 254 (479)
Q Consensus 195 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------- 254 (479)
.++..+...+..+-+.++..-.. .+....-.+..++...|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 35555666666666655443322 23333345566777777777777777654210
Q ss_pred --CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 011714 255 --GVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK----ISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV 328 (479)
Q Consensus 255 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (479)
....-..-|..++..+.+.+.++.++++-....+....-+. ..|..+.+.+...|++++|...+..+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 00112356788899999999999999888777654222121 2578899999999999999999888776543
Q ss_pred CHHHHHHHHHHHhccc-------chhhccHHHHHHHHHHHHh-C-CCCCChhhHHHHHHHHhcCCCHHHH-HHHHHHHHH
Q 011714 329 DERMMNSLLRGLCMKS-------WEEKDLLEDAYQVFEKMTK-K-VSVTDPGTYGIVIRTLGKGKKTDEA-LIHLHHAIE 398 (479)
Q Consensus 329 ~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 398 (479)
....+..++..++..+ +.-.|..++..+++...-+ . .+...+.-|..|-..+...|++..| .-+|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3455666666555221 0113555666666643222 1 1111223466666666777776554 445565543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.28 E-value=7.4 Score=35.72 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRN--CLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
...+...|.+.|+++.|.+.+.++...- ...-...+..+++.+...+++..+...+.++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455555555555555555544321 1112233444455555555555555555444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.90 E-value=21 Score=31.14 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCcCHHHHHHHHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSI----FKEMVRFGFEVDERMMNSLLR 338 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 338 (479)
|.++..-|.+.+++++|++++-.-- ..+.+.|+...|.++ ++-..+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444555666777777776653321 123334444333332 233334555666666555555
Q ss_pred HHhcccchhhcc---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 339 GLCMKSWEEKDL---LEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 339 ~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
.+.........+ +..|+..=.. ......-|+.....+...|.+.+++.+|...|- .|-.+.+..+..++.-+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 554332111111 1112211111 112234467778888999999999999887762 23334446666665554
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh
Q 011714 416 CGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK 468 (479)
Q Consensus 416 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (479)
...+...++--+ . ...+--|.-.++...|..+++...+
T Consensus 178 ~~~~~~~e~dlf--------------i-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHTAPLY--------------C-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGGHHHH--------------H-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHH--------------H-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 443332221111 1 1222245566777777776665554
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=83.38 E-value=7.5 Score=29.84 Aligned_cols=49 Identities=8% Similarity=-0.128 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 011714 389 ALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI 437 (479)
Q Consensus 389 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 437 (479)
+.++|..|...|+-- -+..|......+...|++.+|..+|+..++.+-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 334444444443322 1233444444444555555555555555544433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.53 E-value=13 Score=33.99 Aligned_cols=98 Identities=15% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--H
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRI--GCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND---GLKPDVYT--Y 228 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 228 (479)
.++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888888888888888888888753 22334566777888888888888888888776532 22222211 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 011714 229 TAVMDGFCKVGRSNEAMELLNEAIE 253 (479)
Q Consensus 229 ~~li~~~~~~~~~~~a~~~~~~~~~ 253 (479)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112223456778888777766554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.36 E-value=13 Score=27.63 Aligned_cols=75 Identities=8% Similarity=-0.088 Sum_probs=50.0
Q ss_pred CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCch
Q 011714 327 EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRT 405 (479)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 405 (479)
.|+..+-..+..++.+. ....+..+++.+++.+...++.-.....-.+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S--~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS--TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 45555554455555443 245667788888888777554323345556777888999999999999988884 5543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.03 E-value=28 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=21.4
Q ss_pred CCCcchHHHHHHHHHHhcCCh---hhHHHHHHHH
Q 011714 46 KENPRSLQAQRFVDRIKASPL---KERIDIFDSI 76 (479)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~ 76 (479)
.++.-.....++-..+..|++ -+|.+.++.+
T Consensus 8 ~~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 8 HSNKIERIIARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp --CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccccHHHHHHHHH
Confidence 345556777788888889998 7887766554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.66 E-value=27 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHH
Q 011714 50 RSLQAQRFVDRIKASPLKERIDIFDSI 76 (479)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (479)
......++-..+..|+.-+|.+.++.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 455666777778889888887776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 479 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 8/168 (4%)
Query: 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNS-WTFSIMIRCYCNKNDFFEARKVIDCM 146
+++L E A+ F +A + L PN + + F A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 147 FDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNI-QTYNCLLKGLCYVGR 205
+ + L + G + A++ + I +P+ Y L L G
Sbjct: 230 LSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRA--IELQPHFPDAYCNLANALKEKGS 286
Query: 206 VEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIE 253
V EA + N + + + + G EA+ L +A+E
Sbjct: 287 VAEAEDC-YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 8/168 (4%)
Query: 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMF 147
+ +L L + AV + A S ++ + Y + A
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 148 DNGYHPN-VTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206
+ P+ + L N+L + G + EA + + R+ C + + N L G +
Sbjct: 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNI 321
Query: 207 EEAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEAMELLNEAIE 253
EEA + + P+ ++ + + G+ EA+ EAI
Sbjct: 322 EEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.32 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.75 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.05 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.7 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.37 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.35 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.09 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.45 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.81 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.94 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.86 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.88 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.3e-22 Score=183.49 Aligned_cols=380 Identities=12% Similarity=0.065 Sum_probs=307.4
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH
Q 011714 60 RIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEA 139 (479)
Q Consensus 60 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (479)
..+.|++++|+..++.+.+..+. ++..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A 86 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccc
Confidence 45779999999999999877654 78889999999999999999999999998765 55678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 140 RKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
...+....+.. +.+...+..........+....+........... .................+....+...+......
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhcc
Confidence 99999998764 4455666666666666677777776666665543 344555566677778888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHH
Q 011714 220 GLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYS 299 (479)
Q Consensus 220 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 299 (479)
. +-+...+..+...+...|++++|...++..++.... +...+..+...+...|++++|+..+++....+. .+...+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 241 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHH
Confidence 4 236778888889999999999999999998886433 667888999999999999999999999887643 3577788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011714 300 TLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRT 379 (479)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (479)
.+...+...|++++|...++++++... -+...+..+...+. ..|++++|...++......+. +...+..+..+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 314 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK-----EKGSVAEAEDCYNTALRLCPT-HADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-----HcCCHHHHHHHHHhhhccCCc-cchhhhHHHHH
Confidence 888999999999999999999887642 23455555666664 679999999999988876554 67788899999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 011714 380 LGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEK 455 (479)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (479)
+...|++++|++.++++++... -+..++..+..++...|++++|+..|+++++.. +-+...|..++.+|.+.|+
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999887532 246778889999999999999999999999875 4467889999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-21 Score=179.99 Aligned_cols=367 Identities=16% Similarity=0.104 Sum_probs=301.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|...++...+.. |-+..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4566788999999999999998764 5568899999999999999999999999998764 4478899999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011714 171 LKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNE 250 (479)
Q Consensus 171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 250 (479)
+++|++.+....+.. +.+...+..........+....+............. ...............+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 999999999998875 445556666666666666666666666655554333 444555666677788888899888888
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 011714 251 AIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDE 330 (479)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (479)
...... .+...+..+...+...|++++|...+++..+... -+...+..+...+...|++++|...+......... +.
T Consensus 161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 877643 3667888889999999999999999999887542 25678889999999999999999999998876433 44
Q ss_pred HHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 011714 331 RMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNN 410 (479)
Q Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 410 (479)
..+..+...+. ..|++++|...|++..+..+. +..++..+..++...|++++|++.++.+... .+.+...+..
T Consensus 238 ~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 310 (388)
T d1w3ba_ 238 VVHGNLACVYY-----EQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNN 310 (388)
T ss_dssp HHHHHHHHHHH-----HTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHH-----HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhH
Confidence 55555555554 679999999999999887655 6788999999999999999999999998876 3456778899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVIPQ 474 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 474 (479)
+..++...|++++|+..+++.++.. +.+..++..++.+|.+.|++++|.+.|+++++. .|+
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~ 371 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT 371 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9999999999999999999998875 446788999999999999999999999999884 454
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-13 Score=122.61 Aligned_cols=230 Identities=11% Similarity=0.070 Sum_probs=174.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 011714 53 QAQRFVDRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN 132 (479)
Q Consensus 53 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (479)
.+..-+..++.|+.++|+..|+.+.+.++. ++.+|..+..++...|++++|+..|+++.+.. +-+...+..+..++..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 355667778899999999999999887755 78899999999999999999999999988764 4567888899999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHH
Q 011714 133 KNDFFEARKVIDCMFDNGYHPNVTT----------------FTILVNSLCKSGRLKEALEVLDQMGRIG-CKPNIQTYNC 195 (479)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ 195 (479)
.|++++|.+.++...... |+... ....+..+...+...+|.+.+.+..+.. ...+..++..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999987653 22111 1112223344556777777777766543 1335667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 011714 196 LLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGT 275 (479)
Q Consensus 196 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (479)
+...+...|++++|+..+++....... +...|..+..++...|++++|.+.|+++++.... +...|..+..+|.+.|+
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCC
Confidence 888888888888888888887765422 5777888888888888888888888888775322 56677888888888888
Q ss_pred hhhHHHHHHHHHh
Q 011714 276 PMKGVGLLKLMKK 288 (479)
Q Consensus 276 ~~~a~~~~~~~~~ 288 (479)
+++|+..|++..+
T Consensus 256 ~~~A~~~~~~al~ 268 (323)
T d1fcha_ 256 HREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.4e-14 Score=123.52 Aligned_cols=273 Identities=15% Similarity=0.057 Sum_probs=178.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 011714 160 ILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239 (479)
Q Consensus 160 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 239 (479)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.+..+.... +...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 34556677888888888888877764 445677777888888888888888888877765422 5667777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 011714 240 RSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFK 319 (479)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (479)
++++|.+.++.+.... |+............. ..+.......+..+...+.+.++...+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888887776642 221110000000000 0000111111223344455677777777
Q ss_pred HHHHcCC-CcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011714 320 EMVRFGF-EVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIE 398 (479)
Q Consensus 320 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (479)
+.++... ..+...+..+...+. ..|++++|...|+......+. +...|..+..++...|++++|++.++++++
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFN-----LSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHH-----HHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHH
Confidence 7765432 234444554544443 568899999999888776554 667888899999999999999999999887
Q ss_pred cCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----------CCCHhhHHHHHHHHhccCCHhHHHHH
Q 011714 399 MGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAK----------IPSRTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 399 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
... -+..+|..+..+|.+.|++++|+..|++.++... ......|..+..++...|+.+.+...
T Consensus 235 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 235 LQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 532 2466788888999999999999999998876311 22234566677777777877665444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=6e-10 Score=97.33 Aligned_cols=220 Identities=8% Similarity=0.058 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011714 156 TTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG-RVEEAYEMLMNVKNDGLKPDVYTYTAVMDG 234 (479)
Q Consensus 156 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (479)
..++.+..++.+.+..++|+++++++++.+ +-+..+|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 344445555555555666666666655553 334455555555555544 355555555555544322 45555555555
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHH
Q 011714 235 FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPA 314 (479)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (479)
+.+.|++++|+..++.+++.... +...|..+...+.+.|++++|+..++++.+.+.. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~---- 195 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG---- 195 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC----
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccc----
Confidence 55555555555555555554322 4555555555555555555555555555554321 33344443333332222
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHH
Q 011714 315 VSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLH 394 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (479)
....+.+++|...+.......+. +...|..+...+... ..+++.+.++
T Consensus 196 ------------------------------~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~ 243 (315)
T d2h6fa1 196 ------------------------------YNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLN 243 (315)
T ss_dssp ------------------------------SCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHH
T ss_pred ------------------------------cchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 12335566667767666665544 556666665554433 3466666666
Q ss_pred HHHHcCCCC-chHHHHHHHHHH
Q 011714 395 HAIEMGHIP-RTITFNNVIQAL 415 (479)
Q Consensus 395 ~~~~~~~~p-~~~~~~~l~~~~ 415 (479)
...+....+ +...+..++..|
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHH
Confidence 665532222 233444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.3e-10 Score=97.20 Aligned_cols=196 Identities=11% Similarity=0.025 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 87 DFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN-DFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 87 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
.++.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..++...+.. +-+..+|..+..++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 33444444445555555555555555443 334445555555554443 3555555555555443 23455555555555
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGR----- 240 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 240 (479)
.+.|++++|++.++++.+.. +.+..+|..+...+...|++++|++.++++.+.++. +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 55555555555555555543 334555555555555555555555555555554322 44445444444433332
Q ss_pred -HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011714 241 -SNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKK 288 (479)
Q Consensus 241 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 288 (479)
+++|+..+..+++.... +...|+.+...+... ..+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 45566666666554322 455555554444333 34555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=4.3e-09 Score=93.67 Aligned_cols=296 Identities=11% Similarity=-0.011 Sum_probs=166.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRIGCKPN----IQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GLKP-DVYTYTAVM 232 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li 232 (479)
...+...|++++|++++++..+.....+ ..++..+...+...|++++|...+++..+. +..+ ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3444455555555555555544321101 123444555555556666666665554431 1000 122334445
Q ss_pred HHHHccCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCCHhHHHHH
Q 011714 233 DGFCKVGRSNEAMELLNEAIER----GVT--P-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKR----NCLPDKISYSTL 301 (479)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l 301 (479)
..+...|++..+...+...... +.. + ....+..+...+...|+++.+...+...... +.......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5566666666666666655431 111 1 1123445556667777777777777666442 222223445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCcCHH----HHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCC---hhh
Q 011714 302 LNGLLKWGKIRPAVSIFKEMVRF--GFEVDER----MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTD---PGT 372 (479)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 372 (479)
...+...++...+...+.+.... ....... ........+ ...|+++.|...+..........+ ...
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-----QMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHH-----HhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 56666777777777776665431 1111111 111222222 256888888888887765433322 234
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCC----CC
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEM----GHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEH----AKI----PS 439 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~ 439 (479)
+..+..++...|++++|...++++... +..|+ ..++..+..+|...|++++|++.+++..+. +.. ..
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~ 333 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHH
Confidence 566788899999999999999887632 33333 356777888999999999999999987653 211 12
Q ss_pred HhhHHHHHHHHhccCCHhHHHHH
Q 011714 440 RTSYDMLITKLDQLEKSYDACAL 462 (479)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~ 462 (479)
...+..++..+...++.+++..-
T Consensus 334 ~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 334 GEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHH
Confidence 23455566677777877776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.9e-09 Score=94.07 Aligned_cols=186 Identities=8% Similarity=0.010 Sum_probs=94.8
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011714 136 FFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMN 215 (479)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 215 (479)
.++|..+|+...+...+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555543333344455555555555555666666555555443222233455555555555566666666655
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC
Q 011714 216 VKNDGLKPDVYTYTAVMDG-FCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN-CLP 293 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 293 (479)
+.+.+.. +...|...... +...|+.+.|..+|+.+++.. +.+...|...+..+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5544322 22223222222 233455666666666655542 2245555666666666666666666666655442 222
Q ss_pred C--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 294 D--KISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 294 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
. ...|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 23455555555555666666666665544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.5e-09 Score=93.23 Aligned_cols=150 Identities=11% Similarity=-0.013 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011714 172 KEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEA 251 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 251 (479)
++|..+|++..+...+.+...|...+....+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555544433233444445555555555555555555555544322222334455555555555555555555555
Q ss_pred HHCCCCCCHhhHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 252 IERGVTPNVVTFNTLFNG-YCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
.+.+.. +...|...... +...|+.+.|..+|+.+.+. .+.+...+...+..+...|+++.|+.+|++.++
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 444222 22222222221 22234555555555555443 122344455555555555555555555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=4.5e-09 Score=93.53 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CC-CCHhh
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPD----VYTYTAVMDGFCKVGRSNEAMELLNEAIERG----VT-PNVVT 262 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~ 262 (479)
........+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+.. .. .....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456677899999999999999887633222 3466778889999999999999999886531 11 11235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh----CCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc----CHH
Q 011714 263 FNTLFNGYCKEGTPMKGVGLLKLMKK----RNCL--P-DKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEV----DER 331 (479)
Q Consensus 263 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 331 (479)
+..+...+...|++..+...+..... .+.. + ....+..+...+...|+++.+...+.......... ...
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 56677788999999999998887653 2211 1 12355667778899999999999999887543221 222
Q ss_pred HHHHHHHHHhcccchhhccHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--
Q 011714 332 MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKK----VSVT--DPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-- 403 (479)
Q Consensus 332 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-- 403 (479)
.+......+. ..+....+...+...... +..+ ....+..+...+...|++++|...+++........
T Consensus 174 ~~~~~~~~~~-----~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 174 CLAMLIQCSL-----ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp HHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 2222223332 557788888777765431 1111 12346667778889999999999999876543222
Q ss_pred -chHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 404 -RTITFNNVIQALCGEGKIDKALLLLFLMYEH----AKIP-SRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 404 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
....+..+..++...|++++|...++++... +..| ....+..+..+|.+.|++++|.+.++++++.
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2334566788999999999999999988642 3223 3456788889999999999999999998763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=1.9e-09 Score=91.45 Aligned_cols=199 Identities=12% Similarity=-0.021 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011714 85 VSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNS 164 (479)
Q Consensus 85 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 164 (479)
..+|..+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|+++.+.. +-+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 4567778888889999999999999988764 5568888899999999999999999999988764 3456778888888
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH---
Q 011714 165 LCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRS--- 241 (479)
Q Consensus 165 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--- 241 (479)
+...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+..........+ ..+. ++..+......
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHH
Confidence 889999999999998888764 3345544445555556666555555555555432221 1121 22222221111
Q ss_pred -HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 011714 242 -NEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRN 290 (479)
Q Consensus 242 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 290 (479)
+.+...+....... +-...+|..+...|...|++++|+..|++.....
T Consensus 191 ~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 191 MERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 11111111111110 0012345556677777777777777777776643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=2e-10 Score=101.71 Aligned_cols=231 Identities=11% Similarity=-0.029 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChhhHHH
Q 011714 205 RVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG--RSNEAMELLNEAIERGVTPNVVTFN-TLFNGYCKEGTPMKGVG 281 (479)
Q Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~ 281 (479)
.+++|+.+++...+.... +...|..+..++...+ ++++|...+..+.+.... +...+. .....+...+.+++|+.
T Consensus 88 ~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 345566666665554322 4445554444444443 355666666666554222 333332 23344555566666666
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHH
Q 011714 282 LLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKM 361 (479)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 361 (479)
.++.+...+.. +...|..+..++...|++++|...+....+. .|.. .. ....+. ..+..+++...+...
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~-~~~~~~-----~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE--LE-LVQNAF-----FTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH--HH-HHHHHH-----HHCSSCSHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH--HH-HHHHHH-----HhcchhHHHHHHHHH
Confidence 66666555432 4555666666666666655554443332221 1111 01 111111 223344555556655
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh
Q 011714 362 TKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRT 441 (479)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 441 (479)
....+. +...+..++..+...|+.++|+..+.+...... .+..++..+..++...|++++|+++++++.+.+ |....
T Consensus 235 l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~ 311 (334)
T d1dcea1 235 LLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAA 311 (334)
T ss_dssp HHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHH
T ss_pred HHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHH
Confidence 554432 344555666666777778888887777655321 144566777777888888888888888887764 22344
Q ss_pred hHHHHHHHHh
Q 011714 442 SYDMLITKLD 451 (479)
Q Consensus 442 ~~~~l~~~~~ 451 (479)
.|..|...+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.4e-09 Score=89.11 Aligned_cols=96 Identities=9% Similarity=-0.144 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYC 271 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (479)
+|..+..+|.+.|++++|+..|++..+.... +..+|..+..++...|++++|+..|+++++.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 4444455555555555555555555543221 4555555555555555555555555555554222 3344555555555
Q ss_pred hcCChhhHHHHHHHHHhC
Q 011714 272 KEGTPMKGVGLLKLMKKR 289 (479)
Q Consensus 272 ~~g~~~~a~~~~~~~~~~ 289 (479)
..|++++|...++...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2e-09 Score=95.08 Aligned_cols=233 Identities=9% Similarity=-0.029 Sum_probs=148.3
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHH
Q 011714 167 KSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVG--RVEEAYEMLMNVKNDGLKPDVYTYT-AVMDGFCKVGRSNE 243 (479)
Q Consensus 167 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~ 243 (479)
..|++++|+.+++...+.. +.+...|..+..++...+ ++++|+..+.++...... +...+. .....+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence 3445677777787777654 446667777766666655 477888888887765332 444443 34456667788888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011714 244 AMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEMVR 323 (479)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (479)
|+..++.+++.... +...|+.+..++.+.|++++|...+....+.. |+ .......+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888888776544 67778888888888888877765444333220 11 11223334555666777777777665
Q ss_pred cCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 011714 324 FGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP 403 (479)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 403 (479)
.... +......+...+. ..++.++|...+.+....++. +...|..++.++...|++++|++.++++.+. .|
T Consensus 237 ~~~~-~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP 307 (334)
T d1dcea1 237 GRAE-PLFRCELSVEKST-----VLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DP 307 (334)
T ss_dssp SCCC-CSSSCCCCHHHHH-----HHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CG
T ss_pred hCcc-hhhHHHHHHHHHH-----HHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Cc
Confidence 4322 1111222222222 447888888888888776543 5577888889999999999999999999885 45
Q ss_pred c-hHHHHHHHHHHH
Q 011714 404 R-TITFNNVIQALC 416 (479)
Q Consensus 404 ~-~~~~~~l~~~~~ 416 (479)
+ ...|..+...+.
T Consensus 308 ~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 308 MRAAYLDDLRSKFL 321 (334)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 4 344555544443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.75 E-value=3.5e-05 Score=64.54 Aligned_cols=226 Identities=12% Similarity=0.008 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCN----KNDFFEARKVIDCMFDNGYHPNVTTFT 159 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (479)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45677788888888999999999999998876 56667777777776 568888999998888765 445555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011714 160 ILVNSLCK----SGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCY----VGRVEEAYEMLMNVKNDGLKPDVYTYTAV 231 (479)
Q Consensus 160 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 231 (479)
.+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 55555543 4577889999998887762 2333333333332 445677777777776643 56677777
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011714 232 MDGFCK----VGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCK----EGTPMKGVGLLKLMKKRNCLPDKISYSTLLN 303 (479)
Q Consensus 232 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 303 (479)
...+.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777765 456778888888887764 55566666666655 567899999999998887 4566666766
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCC
Q 011714 304 GLLK----WGKIRPAVSIFKEMVRFGFE 327 (479)
Q Consensus 304 ~~~~----~~~~~~a~~~~~~~~~~~~~ 327 (479)
.|.. ..+.++|.++|++..+.|..
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 6664 34788899999998877644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.8e-07 Score=72.02 Aligned_cols=123 Identities=12% Similarity=-0.035 Sum_probs=70.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011714 92 LMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRL 171 (479)
Q Consensus 92 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 171 (479)
...+...|+++.|++.|+++. +|+..+|..+..+|...|++++|++.|++.++.. +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344456666777766666532 4556666666666667777777777777666654 33566666666666667777
Q ss_pred HHHHHHHHHHhhCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 172 KEALEVLDQMGRIGC--------------KPN-IQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 172 ~~a~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
++|++.|++...... +++ ..++..+..++.+.|++++|.+.+....+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777666666543210 000 123334444555555555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.74 E-value=1.7e-05 Score=66.55 Aligned_cols=62 Identities=6% Similarity=-0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHC
Q 011714 190 IQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCK----VGRSNEAMELLNEAIER 254 (479)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~ 254 (479)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+....+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 3445555555556666666666666665544 34444444444443 34555565555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=8.5e-07 Score=70.52 Aligned_cols=126 Identities=12% Similarity=-0.076 Sum_probs=90.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (479)
...+...|+++.|++.|+++ .+|+..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44566778888888888764 25677788888888888888888888888888765 55677888888888888888
Q ss_pred HHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 207 EEAYEMLMNVKNDGLK--------------P-DVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 207 ~~a~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
++|++.|++....... + ...++..+..++.+.|++++|.+.+....+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8888888887653110 0 1244455666677777777777777776665433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.9e-07 Score=64.24 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
-...+...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3445555666666666666665543 4445556666666666666666666666665543 3355556666666666666
Q ss_pred hHHHHHHHHHHhhC
Q 011714 171 LKEALEVLDQMGRI 184 (479)
Q Consensus 171 ~~~a~~~~~~~~~~ 184 (479)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=9.6e-07 Score=75.64 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSY----GLAP-NSWTFSIMIRCYCNKNDFFEARKVIDCMF 147 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (479)
|......|...|++++|.+.|.++... +-++ -..+|..+..+|.+.|++++|.+.++...
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 333445555566666666666654421 1111 12344555555555555555555555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=7.2e-07 Score=76.42 Aligned_cols=164 Identities=12% Similarity=-0.046 Sum_probs=101.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 011714 161 LVNSLCKSGRLKEALEVLDQMGRI----GCKP-NIQTYNCLLKGLCYVGRVEEAYEMLMNVKND----GL-KPDVYTYTA 230 (479)
Q Consensus 161 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 230 (479)
...+|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++.... +. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677777888888877776542 1111 2356777777888888888888887765442 11 111344555
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------hHH
Q 011714 231 VMDGFC-KVGRSNEAMELLNEAIER----GVTP-NVVTFNTLFNGYCKEGTPMKGVGLLKLMKKRNCLPDK------ISY 298 (479)
Q Consensus 231 li~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~ 298 (479)
+...|. ..|++++|+..+++..+. +..+ ...++..+...+...|++++|+..++++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 458888888888776542 1111 1235667778888888888888888887664322111 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 011714 299 STLLNGLLKWGKIRPAVSIFKEMVRF 324 (479)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (479)
...+..+...|++..|...+.+..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444566778888888888777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=2.9e-07 Score=74.14 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=45.3
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHcCCCHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIP-RTITFNNVIQALCGEGKIDKAL 425 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 425 (479)
..|++++|+..|++....++. ++..|..++.+|.+.|++++|+..++++++. .| +..+|..+..+|...|++++|+
T Consensus 16 ~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~~~~~A~ 92 (201)
T d2c2la1 16 VGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAI 92 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555555554433 4455555555555555555555555555543 22 2444555555555555555555
Q ss_pred HHHHHHHh
Q 011714 426 LLLFLMYE 433 (479)
Q Consensus 426 ~~~~~~~~ 433 (479)
..|+++.+
T Consensus 93 ~~~~~al~ 100 (201)
T d2c2la1 93 ANLQRAYS 100 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-06 Score=67.42 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
......+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|...|+..++.. +.+..+|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 334556667777777777777777654 4566677777777777777777777777776653 34566777777777777
Q ss_pred CChHHHHHHHHHHhhCC
Q 011714 169 GRLKEALEVLDQMGRIG 185 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~ 185 (479)
|++++|...+++.....
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 77777777777776653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.2e-06 Score=61.77 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=53.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011714 127 IRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRV 206 (479)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (479)
...+...|++++|+..|++.++.. |.+...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 344555666666666666665543 3355556666666666666666666666665554 44555666666666666666
Q ss_pred HHHHHHHHHHHHC
Q 011714 207 EEAYEMLMNVKND 219 (479)
Q Consensus 207 ~~a~~~~~~~~~~ 219 (479)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=3.9e-07 Score=65.31 Aligned_cols=93 Identities=13% Similarity=-0.086 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 011714 373 YGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQ 452 (479)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (479)
+-.++..+.+.|++++|+..+++++..... +...|..+..++.+.|++++|+..+++.++.. +.+...|..++..|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence 445677889999999999999999986432 67889999999999999999999999999886 5578899999999999
Q ss_pred cCCHhHHHHHHHHHH
Q 011714 453 LEKSYDACALYGAAL 467 (479)
Q Consensus 453 ~g~~~~A~~~~~~~~ 467 (479)
.|++++|.+.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3e-06 Score=65.06 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=44.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSN 242 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 242 (479)
..|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+... -+..+|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555554443 33444455555555555555555555555544321 13444555555555555555
Q ss_pred HHHHHHHHHHHC
Q 011714 243 EAMELLNEAIER 254 (479)
Q Consensus 243 ~a~~~~~~~~~~ 254 (479)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.47 E-value=1.5e-06 Score=69.82 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 83 WSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 83 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
|++..+......+.+.|++++|+..|+++.... +.+...|..+..+|.+.|++++|+..|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 344444455555555555555555555554443 3344455555555555555555555555554432 22344455555
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 011714 163 NSLCKSGRLKEALEVLDQMG 182 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~ 182 (479)
.+|.+.|++++|+..|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=8.8e-07 Score=64.20 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=61.5
Q ss_pred HHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCc-hHHHHH
Q 011714 335 SLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKK---TDEALIHLHHAIEMGHIPR-TITFNN 410 (479)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~ 410 (479)
.++..+. ..+++++|.+.|++....++. ++.++..+..++.+.++ +++|+.+++++...+..|+ ..++..
T Consensus 4 ~l~n~~~-----~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 4 AVLNELV-----SVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHhc-----CHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 4455554 557777777777777776554 66667777777766444 3457777777665433332 235666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 411 VIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 411 l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
+..+|.+.|++++|+++|+++++..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 7777777777777777777777754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.37 E-value=1.6e-06 Score=61.92 Aligned_cols=89 Identities=10% Similarity=-0.021 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011714 91 LLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGR 170 (479)
Q Consensus 91 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 170 (479)
+...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..++...+.. |.+...|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3444555555555555555555443 3345555555555555555555555555555443 2345555555555555555
Q ss_pred hHHHHHHHHHH
Q 011714 171 LKEALEVLDQM 181 (479)
Q Consensus 171 ~~~a~~~~~~~ 181 (479)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.7e-06 Score=60.80 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 011714 90 DLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKND---FFEARKVIDCMFDNGYHPN-VTTFTILVNSL 165 (479)
Q Consensus 90 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 165 (479)
.++..+...+++++|.+.|++..+.+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..|..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555666666666666666666554 4555666666666655433 3346666666655432222 22455566666
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 011714 166 CKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~ 184 (479)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0014 Score=55.81 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
|...-..+...|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 33444455566666666666666665433 2455556666666666665555433 14556666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVG 239 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 239 (479)
.+.+.....-+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 66555444332 1222222334444455666666666666666666665432 1334555566666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.4e-05 Score=58.37 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSL 165 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 165 (479)
..+......+.+.|++++|+..|.+.+........ ....-......+ ...+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 33455566778888888888888877643100000 000000000111 112344555566
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 166 CKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 166 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
.+.|++++|+..++..+... |.++.+|..+..+|...|++++|+..|++..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666666666666665553 335556666666666666666666666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0017 Score=55.27 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=110.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011714 117 APNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCL 196 (479)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 196 (479)
.||..-...++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 4566566677888889999999999998653 35667788889999999998887543 67789889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 011714 197 LKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTP 276 (479)
Q Consensus 197 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (479)
...+........+ .+.......+......++..|-..|.+++...+++..... ...+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 9988888776543 2223334446666778899999999999999999987654 2457778889999998865 3
Q ss_pred hhHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 011714 277 MKGVGLLKLMKKRNCLPDKISYSTLLNGLLKWGKIRPAVSIFKEM 321 (479)
Q Consensus 277 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (479)
++..+.+.... +......++..|-..+-++++.-++..+
T Consensus 149 ~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 149 QKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 44444443321 1122334455666666666665555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5e-06 Score=60.93 Aligned_cols=92 Identities=22% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-CC-----HhhHHHHHHH
Q 011714 376 VIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKI-PS-----RTSYDMLITK 449 (479)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l~~~ 449 (479)
++..+...|++++|+..|+++++... .+...+..+..+|.+.|++++|+..++++++.... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 34444444555555555554444321 13444444444555555555555555444432110 00 1233334444
Q ss_pred HhccCCHhHHHHHHHHHHh
Q 011714 450 LDQLEKSYDACALYGAALK 468 (479)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~ 468 (479)
+...+++++|++.|++.+.
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444455555555544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.8e-05 Score=61.26 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=87.1
Q ss_pred hhccHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTD--------------PGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVI 412 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 412 (479)
..|++++|+..|.+......... ..+|+.+..+|.+.|++++|+..+++++.... .+...+..+.
T Consensus 25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g 103 (170)
T d1p5qa1 25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRG 103 (170)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHH
Confidence 67999999999998876432211 13466788889999999999999999998642 2677888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHH-HHHHHHH
Q 011714 413 QALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDAC-ALYGAAL 467 (479)
Q Consensus 413 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 467 (479)
.++...|++++|+..|+++.+.. +.+......+..+..+.+...+.. +.++.|.
T Consensus 104 ~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f 158 (170)
T d1p5qa1 104 EAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 158 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 336666666666655544444332 2344443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=2.9e-05 Score=58.76 Aligned_cols=62 Identities=10% Similarity=-0.194 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
+|..+..+|.+.|++++|+..++++++.+ +.+..+|..++.++...|++++|...|+++++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666666667777776666666654 445666666666666667777777666666663
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=3.4e-05 Score=56.31 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC-----HHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYH-PN-----VTTFTIL 161 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 161 (479)
+..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++.+++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3456666777777777777777777654 455667777777777777777777777776642100 01 1345555
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC
Q 011714 162 VNSLCKSGRLKEALEVLDQMGRI 184 (479)
Q Consensus 162 i~~~~~~g~~~~a~~~~~~~~~~ 184 (479)
...+...+++++|++.|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666667777777777665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=0.00023 Score=53.58 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011714 88 FNDLLMALVMLNEQETAVKFFSEASSYGLA----PNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVN 163 (479)
Q Consensus 88 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 163 (479)
+..-...+.+.|++.+|+..|.++...-.. ++.... .... .....+|..+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHHH
Confidence 444556677788888888888887653100 111000 0000 011234555666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011714 164 SLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKND 219 (479)
Q Consensus 164 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 219 (479)
+|.+.|++++|++.+++..+.+ +.+..+|..+..++...|++++|+..|++..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666554 445666666666666666666666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.99 E-value=5.6e-05 Score=58.63 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHh-----CCCCCC
Q 011714 407 TFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALK-----QGVIPQ 474 (479)
Q Consensus 407 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~ 474 (479)
.+..+..++...|++++|+..++++++.. +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 34555566666666666666666666654 34556666666666666666666666666533 456554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=2.5e-06 Score=78.95 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChhhHHHHHHH
Q 011714 208 EAYEMLMNVKNDGLKPD-VYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVV-TFNTLFNGYCKEGTPMKGVGLLKL 285 (479)
Q Consensus 208 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 285 (479)
+|.+.|++..+. .|+ ...+..+..++...|++++| |++++.. .|+.. .++. ....-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 677788777653 333 34555666677777777665 5666543 22211 1111 111111224556667776
Q ss_pred HHhCCCCCCHhHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhcccchhhccHHHHHHHHHHHH
Q 011714 286 MKKRNCLPDKISYSTLLNGL--LKWGKIRPAVSIFKEMVRFGFEVDER-MMNSLLRGLCMKSWEEKDLLEDAYQVFEKMT 362 (479)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~ 362 (479)
..+....++..-.......+ ...+.++.+...+....+ ..|+.. .+..+-..+ .+.|+.+.|...+....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~-----~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIIS-----NKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------------CCHHH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHH-----HhCCCHHHHHHHHHHHh
Confidence 66554334433322222222 123334444444333322 223222 222222222 25577777777666554
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh
Q 011714 363 KKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTS 442 (479)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 442 (479)
... ...++..++..+...|++++|+..|+++.+.. +-+...|+.+...+...|+..+|+..|.+.+... +|-..+
T Consensus 148 ~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 148 SYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred CCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 322 12467778888888888888888888888753 2256788888888888888888888888888765 567778
Q ss_pred HHHHHHHHhccC
Q 011714 443 YDMLITKLDQLE 454 (479)
Q Consensus 443 ~~~l~~~~~~~g 454 (479)
+..|...+.+..
T Consensus 223 ~~nL~~~~~~~~ 234 (497)
T d1ya0a1 223 STNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 888877776543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0001 Score=56.72 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
......+...|++++|+..|.++.+.. ............. .. -+.....|..+..++.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHhh
Confidence 345556677888888888888765310 0000000000000 00 012344555566666677
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
|++++|+..+++..+.. +.+..+|..+..++.+.|++++|+..|+...+.... +......+..+..
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 77777777777766654 445666666777777777777777777776664322 4444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=0.00015 Score=56.18 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011714 89 NDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKS 168 (479)
Q Consensus 89 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 168 (479)
..........|++++|.+.|.+....- ++... .......-+...-..+.. .....+..+...+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 334456777888888888888877541 11100 000111111111111211 1345566677777788
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011714 169 GRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN-----DGLKPDVYTY 228 (479)
Q Consensus 169 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 228 (479)
|++++|+..++++.... +-+...|..++.++.+.|+..+|++.|+++.. .|+.|...+-
T Consensus 81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 88888888888877764 55777788888888888888888888777643 4777776553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=8.6e-06 Score=75.26 Aligned_cols=109 Identities=9% Similarity=-0.099 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011714 157 TFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFC 236 (479)
Q Consensus 157 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 236 (479)
.+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|++..+... -+...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34444444444444444444443333211 112333444444444444444444444444321 13344444444444
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 011714 237 KVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGY 270 (479)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (479)
..|+..+|...|.+.+... +|...++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4444444444444444432 22333444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.90 E-value=4.1e-05 Score=57.22 Aligned_cols=117 Identities=19% Similarity=0.100 Sum_probs=85.3
Q ss_pred hhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 011714 346 EEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKG----------KKTDEALIHLHHAIEMGHIPRTITFNNVIQAL 415 (479)
Q Consensus 346 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 415 (479)
.+.+.+++|...|+...+.++. +..++..+..++... +.+++|+..++++++... .+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHH
Confidence 4567889999999999887766 777888888777643 456889999999988643 2567888888888
Q ss_pred HcCC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCC
Q 011714 416 CGEG-----------KIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAALKQGVI 472 (479)
Q Consensus 416 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (479)
...| .+++|.+.|++.++.. |+...+..-+..+ ..|.+++.++.++|+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--P~~~~~~~~L~~~------~ka~~~~~e~~k~~~~ 145 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT------AKAPQLHAEAYKQGLG 145 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH------HTHHHHHHHHHHSSSC
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccC--CCHHHHHHHHHHH------HHHHHHHHHHHHHhcC
Confidence 6654 3688999999998874 5555444333332 5778888888888763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.85 E-value=0.00021 Score=54.83 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 011714 86 SDFNDLLMALVMLNEQETAVKFFSEASSY---GLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILV 162 (479)
Q Consensus 86 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 162 (479)
..+......+.+.|++.+|+..|++.... ....+.. -....+.+ ...+|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhHH
Confidence 44556677788889999999888876532 1011100 00000111 123445555
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011714 163 NSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDG 234 (479)
Q Consensus 163 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 234 (479)
.+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|+++.+..+ .+......+-.+
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~ 141 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMC 141 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 66666666666666666666554 44566666666666666666666666666665432 234444443333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.00017 Score=55.42 Aligned_cols=129 Identities=9% Similarity=-0.007 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 011714 124 SIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGLCYV 203 (479)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (479)
......+...|++.+|+..|++.++. ...........+.. ... +.....|..+..++.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHhh
Confidence 34455567788888888888776531 00001111111111 100 23456778889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 011714 204 GRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEG 274 (479)
Q Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (479)
|++++|+..+.+.++... .+..+|..+..++...|++++|+..|+.+++.... +......+..+..+..
T Consensus 91 ~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 91 SDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 999999999999998753 37889999999999999999999999999987433 5666666666554433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=1.8e-05 Score=65.80 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011714 59 DRIKASPLKERIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSY 114 (479)
Q Consensus 59 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 114 (479)
+.++.|++++|+..++...+..+. +...+..+...++..|++++|+..|+...+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344556666666666665555443 5556666666666666666666666665544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.77 E-value=3.2e-05 Score=64.20 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=60.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 011714 95 LVMLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEA 174 (479)
Q Consensus 95 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 174 (479)
..+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345566777777777766654 5556666667777777777777777776666542 12333343333333322222222
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011714 175 LEVLDQMGRIGCKPNIQTYNCLLKGLCYVGRVEEAYEMLMNVKN 218 (479)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 218 (479)
..-.......+-+++...+......+...|+.++|.++++++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111111111112223333334445555666666666655544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00042 Score=53.02 Aligned_cols=143 Identities=8% Similarity=-0.063 Sum_probs=95.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011714 121 WTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTTFTILVNSLCKSGRLKEALEVLDQMGRIGCKPNIQTYNCLLKGL 200 (479)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (479)
..+......+.+.|++.+|...|+..+..- +. ..+...........+ ...+|..+..+|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~Nla~~~ 74 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWL--EM------------EYGLSEKESKASESF-------LLAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TT------------CCSCCHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HH------------hhccchhhhhhcchh-------HHHHHHhHHHHH
Confidence 345556677888899999998888765320 00 000000111111111 234677788899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChh-hH
Q 011714 201 CYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVTPNVVTFNTLFNGYCKEGTPM-KG 279 (479)
Q Consensus 201 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a 279 (479)
.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+.+++..+. +......+-.+..+.+... ..
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999865 347889999999999999999999999999987433 5556666555555544433 23
Q ss_pred HHHHHHH
Q 011714 280 VGLLKLM 286 (479)
Q Consensus 280 ~~~~~~~ 286 (479)
.+++..|
T Consensus 153 kk~~~~~ 159 (168)
T d1kt1a1 153 RRTYANM 159 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=0.00017 Score=53.72 Aligned_cols=69 Identities=6% Similarity=-0.166 Sum_probs=34.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC----------ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011714 97 MLNEQETAVKFFSEASSYGLAPNSWTFSIMIRCYCNKN----------DFFEARKVIDCMFDNGYHPNVTTFTILVNSLC 166 (479)
Q Consensus 97 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 166 (479)
+.+.+++|+..|+...+.. |.+..++..+..++...+ .+++|+..|++.++.. |.+..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 3344566666666665544 445555555555554332 2344555555555432 234445555555444
Q ss_pred h
Q 011714 167 K 167 (479)
Q Consensus 167 ~ 167 (479)
.
T Consensus 87 ~ 87 (145)
T d1zu2a1 87 S 87 (145)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.56 E-value=0.00054 Score=51.64 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=64.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCC-C----------chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCC-
Q 011714 377 IRTLGKGKKTDEALIHLHHAIEMGHI-P----------RTITFNNVIQALCGEGKIDKALLLLFLMYEHA-----KIPS- 439 (479)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~- 439 (479)
+..+...|++++|+..|++.++.... | ....|+.+..+|...|++++|+..+++.++.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44556678888888888887753111 1 13467778888888888888888888776521 1111
Q ss_pred ----HhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 011714 440 ----RTSYDMLITKLDQLEKSYDACALYGAALKQ 469 (479)
Q Consensus 440 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (479)
...+..++.+|...|++++|++.|+++++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224667788888889999999888888763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0019 Score=43.63 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CCC-chHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 011714 371 GTYGIVIRTLGKGKKTDEALIHLHHAIEMG-----HIP-RTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYD 444 (479)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (479)
..+-.++..+.+.|++++|+..|+++++.. ..+ ...++..+..++.+.|++++|+..++++++.. |-+..++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 334567888889999999999998887541 112 24578888999999999999999999998875 33455555
Q ss_pred HH
Q 011714 445 ML 446 (479)
Q Consensus 445 ~l 446 (479)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0057 Score=45.69 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKND-----GLKPD-----VYTYTAVMDGFCKVGRSNEAMELLNEAI 252 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 252 (479)
+|+.+..+|...|++++|...+++.... ...++ ...+..+..+|...|++++|+..|++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555444321 01111 1123444455555555555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.05 E-value=0.019 Score=41.33 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHc----CCCHHHH
Q 011714 349 DLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTITFNNVIQALCG----EGKIDKA 424 (479)
Q Consensus 349 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a 424 (479)
.++++|...|++..+.+. ......+. .....+.++|++++++..+.| ++.....|...|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 578889999998877653 23333333 345578899999999988865 44455556555553 5678999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhc----cCCHhHHHHHHHHHHhCCC
Q 011714 425 LLLLFLMYEHAKIPSRTSYDMLITKLDQ----LEKSYDACALYGAALKQGV 471 (479)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 471 (479)
.++|++..+.+ ++.....|...|.. ..+..+|.++|+++.+.|.
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999999887 55666677777765 4589999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0021 Score=43.38 Aligned_cols=77 Identities=8% Similarity=-0.049 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 011714 84 SVSDFNDLLMALVMLNEQETAVKFFSEASSYG-----LAPN-SWTFSIMIRCYCNKNDFFEARKVIDCMFDNGYHPNVTT 157 (479)
Q Consensus 84 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (479)
++..+..+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|+..++++++.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 45556667777778888888888877765421 1111 3456667777777777777777777776653 223444
Q ss_pred HHHH
Q 011714 158 FTIL 161 (479)
Q Consensus 158 ~~~l 161 (479)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.70 E-value=0.039 Score=39.56 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHhCC
Q 011714 100 EQETAVKFFSEASSYG 115 (479)
Q Consensus 100 ~~~~A~~~~~~~~~~~ 115 (479)
|+++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.37 E-value=0.078 Score=36.49 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=80.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 011714 305 LLKWGKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGK 384 (479)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (479)
+.-.|..++..++..+.... .+..-++.++.... ..-+-+....+++.+...--.........++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNii-----dt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLL-----ESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHH-----HHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecc-----cccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc
Confidence 44567777777887777653 23444555555443 33444555555555543211000011222333333222
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYG 464 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (479)
-+...+...+.....+|+-++-.++.+.+.+.+ .+++...-.+..+|.+.|...++-+++.
T Consensus 84 ------------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 84 ------------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp ------------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 233445566666777777777777777766644 6677777777778888888888888888
Q ss_pred HHHhCCC
Q 011714 465 AALKQGV 471 (479)
Q Consensus 465 ~~~~~~~ 471 (479)
++-++|+
T Consensus 145 ~ACe~G~ 151 (161)
T d1wy6a1 145 EACKKGE 151 (161)
T ss_dssp HHHHTTC
T ss_pred HHHHHhH
Confidence 7777775
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.83 Score=40.23 Aligned_cols=120 Identities=8% Similarity=-0.034 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHH
Q 011714 309 GKIRPAVSIFKEMVRFGFEVDERMMNSLLRGLCMKSWEEKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDE 388 (479)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (479)
.+.+.+..++......... +......+-..+.... ...+..+.+...+........ +.......+......+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~-~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRL-MGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHH-HHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHH
Confidence 4566666666665543211 2222222222221111 123445556555555544332 23333334444555667777
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 011714 389 ALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYE 433 (479)
Q Consensus 389 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 433 (479)
+...+..+... ..-.....--+..++...|+.+.|..+|..+..
T Consensus 304 ~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 76666655322 111223334455666677777777777776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.091 Score=36.45 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 011714 369 DPGTYGIVIRTLGKGK---KTDEALIHLHHAIEMGHIPR-TITFNNVIQALCGEGKIDKALLLLFLMYEHA 435 (479)
Q Consensus 369 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 435 (479)
...+--....++.+.. +.++++.+++++...+. .+ ...+..|.-+|.+.|++++|+++++.+++..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3334444445555443 34567777777665421 12 2344555566677777777777777777653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.45 E-value=0.45 Score=32.68 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 011714 192 TYNCLLKGLCYVGRVEEAYEMLMNVKNDGLKPDVYTYTAVMDGFCKVGRSNEAMELLNEAIERGVT 257 (479)
Q Consensus 192 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 257 (479)
.+...+..+..+|+-+...++++.+.+. -.+++.....+..+|.+.|...++-+++.++-+.|.+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4445555666666666666666665553 2455555666666666666666666666666666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.81 E-value=0.4 Score=31.10 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011714 385 KTDEALIHLHHAIEMGHIPRTITFNNVIQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLIT 448 (479)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (479)
+.-++.+-+..+......|++.+..+.++||.+.+++..|.++++....+. .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444556666666666777888888888888888888888888888776553 234556665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.55 Score=32.40 Aligned_cols=58 Identities=7% Similarity=-0.120 Sum_probs=42.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCchH
Q 011714 347 EKDLLEDAYQVFEKMTKKVSVTDPGTYGIVIRTLGKGKKTDEALIHLHHAIEMGHIPRTI 406 (479)
Q Consensus 347 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 406 (479)
..++.+.++.+++.+.+.++.-....+-.+.-+|.+.|++++|.+.++.+++. .|+..
T Consensus 50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 45778888888888876543211245667778888999999999999998884 45443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=2.8 Score=36.66 Aligned_cols=52 Identities=12% Similarity=-0.192 Sum_probs=40.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCHhHHHHHHHHH
Q 011714 412 IQALCGEGKIDKALLLLFLMYEHAKIPSRTSYDMLITKLDQLEKSYDACALYGAA 466 (479)
Q Consensus 412 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (479)
+..+...|....|...|..+.+.. +......+.....+.|.++.|+....++
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 456678899999999998887642 5566677788888999999998776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.88 E-value=0.65 Score=30.10 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 011714 69 RIDIFDSIKKDGTNWSVSDFNDLLMALVMLNEQETAVKFFSEASSYGLAPNSWTFSIMI 127 (479)
Q Consensus 69 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 127 (479)
..+-++.+...+..|++.+..+.+++|.+.+++..|+++|+-.+... .++...|..++
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33444445555566677777777777777777777777776655321 22333444443
|