Citrus Sinensis ID: 011721
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 118487530 | 690 | unknown [Populus trichocarpa] | 0.793 | 0.550 | 0.507 | 2e-97 | |
| 224061607 | 281 | predicted protein [Populus trichocarpa] | 0.482 | 0.822 | 0.761 | 4e-96 | |
| 449435896 | 683 | PREDICTED: uncharacterized protein LOC10 | 0.488 | 0.342 | 0.739 | 9e-93 | |
| 356532429 | 657 | PREDICTED: uncharacterized protein LOC10 | 0.711 | 0.519 | 0.488 | 1e-92 | |
| 359483722 | 941 | PREDICTED: uncharacterized protein LOC10 | 0.546 | 0.278 | 0.638 | 1e-92 | |
| 297740866 | 673 | unnamed protein product [Vitis vinifera] | 0.546 | 0.389 | 0.638 | 1e-92 | |
| 357448553 | 617 | hypothetical protein MTR_2g030510 [Medic | 0.655 | 0.508 | 0.525 | 2e-92 | |
| 224122150 | 232 | predicted protein [Populus trichocarpa] | 0.480 | 0.991 | 0.747 | 3e-92 | |
| 449488574 | 297 | PREDICTED: uncharacterized protein LOC10 | 0.475 | 0.767 | 0.75 | 3e-92 | |
| 356558069 | 595 | PREDICTED: uncharacterized protein LOC10 | 0.691 | 0.556 | 0.525 | 1e-91 |
| >gi|118487530|gb|ABK95592.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 213/420 (50%), Positives = 264/420 (62%), Gaps = 40/420 (9%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
+LFHV+HKVPAGDSPYVRAK QL+EKDPS+A+SLFWAAINAGDRVDSALKDMAVVMKQL
Sbjct: 51 DLFHVVHKVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINAGDRVDSALKDMAVVMKQL 110
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
DR++EAIEAIKSFR LC DSQES+DNVL+ELYKRS RIEEEIE+L+ KLK EE IA
Sbjct: 111 DRADEAIEAIKSFRHLCPCDSQESIDNVLVELYKRSGRIEEEIEMLQCKLKLIEEGIAFS 170
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARS GRK QIT+ QE SRI GNLAWAYLQ +DY AE++Y KALSLE D+NKQC
Sbjct: 171 GKKTKTARSHGRKIQITVEQERSRILGNLAWAYLQHHDYGLAEQHYRKALSLEPDQNKQC 230
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTDY 246
NLAICL+ +NRI EAKSLLQ V+A S ++ MD+SYAKSFE A +L E ES S PT+
Sbjct: 231 NLAICLMHMNRIPEAKSLLQTVKALSGSKPMDDSYAKSFERACQILAEFESHSRDNPTEQ 290
Query: 247 GEDKRKKILSSCT----YINGSEEN---VSRFMVPRKCR-KFYYPKTPCERSNGATVTST 298
ED ++ + T + GS VS F+ KC F + + N
Sbjct: 291 NEDHQRSLTLPTTRNLKQVAGSPNGDPFVSGFIDSIKCTGGFNEERMLADEQNRRYYWQN 350
Query: 299 KTEARAVLKKAYALPAGVITNSASPITQPRRPSWTFDNKDQRNQQGKDDATDSPHWKLPI 358
++E K + G +S ++ P+ T + +R +++ P+
Sbjct: 351 RSENE---KNLFVYNNGSSHCISSELSGPQSSLQTAADNSRRR---------GSYFESPV 398
Query: 359 KQMTASENMQED-------------------AVMFTQP-RSSWGFGNRAQRRERWREDTV 398
+++ M+E+ +FTQP R S GF Q + RW EDTV
Sbjct: 399 ERLGFVSKMKENRFSFTETGPASTQKKTFTSPALFTQPRRCSLGFDKGDQIKIRWGEDTV 458
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061607|ref|XP_002300564.1| predicted protein [Populus trichocarpa] gi|222847822|gb|EEE85369.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/231 (76%), Positives = 200/231 (86%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
++FHVIHKVPAGDSPYVRAK QL+EKDPS+A+SLFWAAIN+GDRVDSALKDMAVVMKQL
Sbjct: 51 DIFHVIHKVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINSGDRVDSALKDMAVVMKQL 110
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
DR++EAIEAIKSFR LC DSQES+DNVL+ELYKRS RIEEEIE+L+RKLK EE IA
Sbjct: 111 DRADEAIEAIKSFRHLCPYDSQESIDNVLVELYKRSGRIEEEIEMLQRKLKNIEEGIAFS 170
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARSQGRK QIT+ QE SRI GNLAWAYLQ +DY AE+YY K LS+E D+NKQC
Sbjct: 171 GKKTKTARSQGRKIQITVEQERSRILGNLAWAYLQHHDYGLAEQYYRKGLSMEPDQNKQC 230
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237
NLAICL+ +NRI EAKSLLQ V+ASS ++ MD+SYAKSFE A +LTELES
Sbjct: 231 NLAICLMHMNRIPEAKSLLQTVKASSGSKPMDDSYAKSFERACQILTELES 281
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435896|ref|XP_004135730.1| PREDICTED: uncharacterized protein LOC101215262 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 173/234 (73%), Positives = 198/234 (84%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
+LFHVIHKVPAGDSPYV+AK+ QL+EKDPSRA+SLFWAAINAGDRVDSALKDMAVVMKQL
Sbjct: 50 DLFHVIHKVPAGDSPYVKAKQVQLIEKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL 109
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
DRS+EAIEAIKSFR LC DSQES+DNVL+ELYKRS RIEEEI++L+RKLK+ E+ G
Sbjct: 110 DRSDEAIEAIKSFRHLCPYDSQESIDNVLIELYKRSGRIEEEIDMLQRKLKQIEDGTIFG 169
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARSQG+K QIT+ QE SR+ GNLAWA+LQ N+ AE YY KALSLE+D NK+C
Sbjct: 170 GKRTKAARSQGKKVQITIEQEKSRVLGNLAWAFLQLNNIYVAEDYYRKALSLEADNNKKC 229
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSM 240
NLAIC I NR+ EAKSLLQ+VRASS + +ESYAKSFE A MLTE ES+S
Sbjct: 230 NLAICQILTNRLTEAKSLLQSVRASSGGKPTEESYAKSFERAFHMLTEKESKSF 283
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532429|ref|XP_003534775.1| PREDICTED: uncharacterized protein LOC100792980 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/391 (48%), Positives = 248/391 (63%), Gaps = 50/391 (12%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
++FH+IHKVPAGDSPYV+AK+ QLV+KDP RA+SLFWAAINAGDRV+SALKDMA+VMKQL
Sbjct: 105 DIFHIIHKVPAGDSPYVKAKQVQLVDKDPGRAVSLFWAAINAGDRVESALKDMALVMKQL 164
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
+RS+EAIEAI+SFR LC DSQ+SLDN+L+ELYKRS R++EEI +L KLK+ E+ +
Sbjct: 165 NRSDEAIEAIRSFRHLCPSDSQDSLDNILVELYKRSGRVDEEIAMLCHKLKQIEDGLTFV 224
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
G++TK ARSQG+K QIT QE+SRI GNLAWAYLQ+ DY++AE +Y KALS E D+NKQC
Sbjct: 225 GRTTKQARSQGKKIQITAEQEISRILGNLAWAYLQKGDYKTAEEHYRKALSFEVDRNKQC 284
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQS------- 239
NLAICLI +N+I EAK LLQAVR +++N KMD+S+AKSFE AS ML E+E+ S
Sbjct: 285 NLAICLIHMNKIKEAKFLLQAVRTATKNRKMDDSFAKSFERASQMLIEIETSSSQNAAFS 344
Query: 240 ---MLQPTDYGEDKRKKILSSCTYINGSEEN---VSRFMVPRKCRKFYYPKTPCERSNGA 293
P + I S + EN +S P R+ Y P R
Sbjct: 345 MTTQCPPQSF----ENSIRMSSDSVQSRSENRSEISEGDAPHARRRLYQSPDPSRR---- 396
Query: 294 TVTSTKTEARAVLKKAYALPAGVITNSASPITQPRRPSWTFDNKDQRNQQGKDDATDSPH 353
+ + P T+P+R SW F+N +R G ++ P
Sbjct: 397 -------------------------DLSVPCTKPKRCSWGFNNGHRREAWGDANSDYKPT 431
Query: 354 WKLPI--KQMTASENMQEDAVMFTQPRSSWG 382
+ P K +T N +E+ F+ P + G
Sbjct: 432 FGTPPNDKHVTRMLNSRENG--FSSPANGNG 460
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483722|ref|XP_002266141.2| PREDICTED: uncharacterized protein LOC100242406 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ 65
++LFHV+HKVPAGDSPYVRAK+ QL++KDP+RAISLFWAAIN+GDRVDSALKDMAVVMKQ
Sbjct: 43 DDLFHVVHKVPAGDSPYVRAKQVQLIDKDPNRAISLFWAAINSGDRVDSALKDMAVVMKQ 102
Query: 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC 125
L+RS+EAIEAIKSFR LC +SQESLDNVL+ELYKRS R++E+IE+L+ KLK +E A
Sbjct: 103 LNRSDEAIEAIKSFRHLCPQESQESLDNVLVELYKRSGRLDEQIEMLQYKLKNIDEGSAF 162
Query: 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185
GGK TKIARSQG+K QI++ QE SR+ GNLAWAYLQQ +Y++A Y +AL+L+ D+NK+
Sbjct: 163 GGKRTKIARSQGKKIQISIEQEKSRLLGNLAWAYLQQGNYKTAGELYKQALALDPDRNKE 222
Query: 186 CNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTD 245
CNLAICL+ +N+I EAK++L A++ SS+N +MD+SY KSFE AS +LTELE+ S++ P +
Sbjct: 223 CNLAICLMYMNKIKEAKAMLYAIQVSSQNGRMDDSYVKSFERASQVLTELEANSVIDPNE 282
Query: 246 Y-GEDKRKKILSSCTYINGSEEN 267
G ++ ++ L S N E N
Sbjct: 283 QEGHEEMRRHLRSLVSRNSIEVN 305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740866|emb|CBI31048.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ 65
++LFHV+HKVPAGDSPYVRAK+ QL++KDP+RAISLFWAAIN+GDRVDSALKDMAVVMKQ
Sbjct: 43 DDLFHVVHKVPAGDSPYVRAKQVQLIDKDPNRAISLFWAAINSGDRVDSALKDMAVVMKQ 102
Query: 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC 125
L+RS+EAIEAIKSFR LC +SQESLDNVL+ELYKRS R++E+IE+L+ KLK +E A
Sbjct: 103 LNRSDEAIEAIKSFRHLCPQESQESLDNVLVELYKRSGRLDEQIEMLQYKLKNIDEGSAF 162
Query: 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185
GGK TKIARSQG+K QI++ QE SR+ GNLAWAYLQQ +Y++A Y +AL+L+ D+NK+
Sbjct: 163 GGKRTKIARSQGKKIQISIEQEKSRLLGNLAWAYLQQGNYKTAGELYKQALALDPDRNKE 222
Query: 186 CNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTD 245
CNLAICL+ +N+I EAK++L A++ SS+N +MD+SY KSFE AS +LTELE+ S++ P +
Sbjct: 223 CNLAICLMYMNKIKEAKAMLYAIQVSSQNGRMDDSYVKSFERASQVLTELEANSVIDPNE 282
Query: 246 Y-GEDKRKKILSSCTYINGSEEN 267
G ++ ++ L S N E N
Sbjct: 283 QEGHEEMRRHLRSLVSRNSIEVN 305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448553|ref|XP_003594552.1| hypothetical protein MTR_2g030510 [Medicago truncatula] gi|355483600|gb|AES64803.1| hypothetical protein MTR_2g030510 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 183/348 (52%), Positives = 239/348 (68%), Gaps = 34/348 (9%)
Query: 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ 65
++LFHVIHKVP+GDSPYV+AK+ QLV+KDP +AISLFWAAINAGDRV+SALKDMA+VMKQ
Sbjct: 48 DDLFHVIHKVPSGDSPYVKAKQVQLVDKDPGKAISLFWAAINAGDRVESALKDMALVMKQ 107
Query: 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC 125
L+RS+EAIEAIKSFR LC DSQESLDN+L+ELYKRS R++EEI +L +KLK+ E+ +
Sbjct: 108 LNRSDEAIEAIKSFRHLCPSDSQESLDNILVELYKRSGRVDEEIGMLHQKLKQIEDGMTY 167
Query: 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185
G++TK ARSQG+K QI+ QE+SRI GNLAWAYLQ+ DY++AE +Y KALS E D+NKQ
Sbjct: 168 VGRTTKHARSQGKKIQISAEQEISRILGNLAWAYLQKGDYKTAEEHYRKALSFEVDRNKQ 227
Query: 186 CNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ--SMLQP 243
CNLAICL+++N++ EA+ LLQAV A+++N KMD+S+ KS+E A+ ML E+ES S+
Sbjct: 228 CNLAICLMQMNKVTEARFLLQAVTAATKNRKMDDSFVKSYERATQMLQEMESTAPSVDSV 287
Query: 244 TDYGEDKRKKILSSCTYINGSEENVSRFMVPRKCRKFYYPKTPCERSNGATVTSTKTEA- 302
D G++K N +E R M Y E SNG T + K+
Sbjct: 288 KDKGDNK----------FNETERFSGRNMSSP------YSTPNLESSNGKTTGTVKSRTE 331
Query: 303 --RAVLKKAY-------------ALPAGVITNSASPITQPRRPSWTFD 335
R++ A +L P T+P+RPSW F+
Sbjct: 332 NNRSLTSDAKDSHHSHARRRLYESLDPAKSDPKVPPYTKPKRPSWGFN 379
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122150|ref|XP_002330553.1| predicted protein [Populus trichocarpa] gi|222872111|gb|EEF09242.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/230 (74%), Positives = 195/230 (84%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
+LFHV+HKVPAGDSPYVRAK QL+EKDPS+A+SLFWAAINAGDRVDSALKDMAVVMKQL
Sbjct: 3 DLFHVVHKVPAGDSPYVRAKHVQLIEKDPSKAVSLFWAAINAGDRVDSALKDMAVVMKQL 62
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
DR++EAIEAIKSFR LC DSQES+DNVL+ELYKRS RIEEEIE+L+ KLK EE IA
Sbjct: 63 DRADEAIEAIKSFRHLCPCDSQESIDNVLVELYKRSGRIEEEIEMLQCKLKLIEEGIAFS 122
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARS GRK QIT+ QE SRI GNLAWAYLQ +DY AE++Y KALSLE D+NKQC
Sbjct: 123 GKKTKTARSHGRKIQITVEQERSRILGNLAWAYLQHHDYGLAEQHYRKALSLEPDQNKQC 182
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236
NLAICL+ +NRI EAKSLLQ V+A S ++ MD+SYAKSFE A +L E E
Sbjct: 183 NLAICLMHMNRIPEAKSLLQTVKALSGSKPMDDSYAKSFERACQILAEFE 232
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449488574|ref|XP_004158093.1| PREDICTED: uncharacterized protein LOC101226286 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 171/228 (75%), Positives = 195/228 (85%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
+LFHVIHKVPAGDSPYV+AK+ QL+EKDPSRA+SLFWAAINAGDRVDSALKDMAVVMKQL
Sbjct: 50 DLFHVIHKVPAGDSPYVKAKQVQLIEKDPSRAVSLFWAAINAGDRVDSALKDMAVVMKQL 109
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
DRS+EAIEAIKSFR LC DSQES+DNVL+ELYKRS RIEEEI++L+RKLK+ E+ G
Sbjct: 110 DRSDEAIEAIKSFRHLCPYDSQESIDNVLIELYKRSGRIEEEIDMLQRKLKQIEDGTIFG 169
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARSQG+K QIT+ QE SR+ GNLAWA+LQ N+ AE YY KALSLE+D NK+C
Sbjct: 170 GKRTKAARSQGKKVQITIEQEKSRVLGNLAWAFLQLNNIYVAEDYYRKALSLEADNNKKC 229
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTE 234
NLAIC I NR+ EAKSLLQ+VRASS + M+ESYAKSFE A MLTE
Sbjct: 230 NLAICQILTNRLTEAKSLLQSVRASSGGKPMEESYAKSFERAFHMLTE 277
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558069|ref|XP_003547331.1| PREDICTED: uncharacterized protein LOC100794684 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 241/354 (68%), Gaps = 23/354 (6%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
+LFH+IHKVPAGDSPYV+AK+ QLV+KDP RAISLFWAAINA DRV+SALKDMA+VMKQL
Sbjct: 42 DLFHIIHKVPAGDSPYVKAKQVQLVDKDPGRAISLFWAAINARDRVESALKDMALVMKQL 101
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126
+RS+EAIEAI+SFR LC DS++SLDN+L+ELYKRS RI+EEI +L KLK+ E+ +
Sbjct: 102 NRSDEAIEAIRSFRHLCPSDSRDSLDNILVELYKRSGRIDEEIAMLHHKLKQIEDGLTFV 161
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
G++TK ARSQG+K QIT QE+SRI GNLAWAYLQ+ DY++AE +Y KALS E D+NKQC
Sbjct: 162 GRTTKQARSQGKKIQITAEQEISRILGNLAWAYLQKGDYKAAEEHYRKALSFEVDRNKQC 221
Query: 187 NLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTDY 246
NLAICLI +N+I EAK LLQAVR +++N KMD+S+AKSFE AS ML E+E+ S Q +
Sbjct: 222 NLAICLIHMNKIKEAKFLLQAVRTATKNRKMDDSFAKSFERASQMLIEIETSSSSQNAAF 281
Query: 247 GEDKRKKILSSCT---YINGSEENVSRFMVPRKCRKFYYPKTPCERSNGATVTSTKTEAR 303
+S C+ + N ++ R + R E S G AR
Sbjct: 282 S----MTTMSQCSPQSFENSIRKSSDRVQSGSESR--------SETSEGDV-----PHAR 324
Query: 304 AVLKKAYALPAGVITNSASPITQPRRPSWTFDNKDQRNQQGKDDATDSPHWKLP 357
++ Y P + + P T+P+R SW F+ +R G ++ P + P
Sbjct: 325 ---RRLYQSPDPSRRDLSVPCTKPKRCSWGFNTGYRREAWGDVNSDYKPSFGTP 375
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2158750 | 469 | AT5G44330 [Arabidopsis thalian | 0.482 | 0.492 | 0.555 | 4.2e-61 | |
| TAIR|locus:2133099 | 450 | MS5 "MALE-STERILE 5" [Arabidop | 0.534 | 0.568 | 0.465 | 2.9e-60 | |
| TAIR|locus:2080858 | 430 | AT3G51280 "AT3G51280" [Arabido | 0.513 | 0.572 | 0.518 | 1.3e-59 | |
| TAIR|locus:2156574 | 306 | ATSDI1 "SULPHUR DEFICIENCY-IND | 0.544 | 0.852 | 0.524 | 2.7e-59 | |
| TAIR|locus:2010612 | 303 | AT1G04770 "AT1G04770" [Arabido | 0.559 | 0.884 | 0.439 | 9.5e-50 |
| TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 130/234 (55%), Positives = 157/234 (67%)
Query: 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI 73
+V GDSPYVRAK AQLV KDP+RAISLFWAAINAGDRVDSALKDM VV+KQL+R +E I
Sbjct: 49 RVRTGDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGI 108
Query: 74 EAIKSFRCLCADDSQESLDNVLLELYXXXXXXXXXXXXXXXXXXXXXXVIACGGKSTKIA 133
EAIKSFR LC +SQ+S+DN+LLELY GG+ KIA
Sbjct: 109 EAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGR-IKIA 167
Query: 134 -RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICL 192
RS + T+ QE +RI GNLAW +LQ ++Y AE+YY ALSLE D NK CNLAICL
Sbjct: 168 KRSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAEQYYRNALSLEPDNNKLCNLAICL 227
Query: 193 IRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSML-QPTD 245
IR+ R EAKSLL+ V+ S N+ +E + KSFE A+ ML E E ++ +P D
Sbjct: 228 IRMERTHEAKSLLEDVKQSLGNQWKNEPFCKSFERATEMLAEREQATVADKPED 281
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| TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 587 (211.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 129/277 (46%), Positives = 175/277 (63%)
Query: 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR 68
FH++HKVP+GDSPYVRAK AQL++KDP+RAISLFW AINAGDRVDSALKDMAVVMKQL R
Sbjct: 51 FHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSALKDMAVVMKQLGR 110
Query: 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYXXXXXXXXXXXXXXXXXXXXXXVIACGGK 128
S+E IEAIKSFR LC+ +SQ+S+DN+LLELY + GG+
Sbjct: 111 SDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKLQTLEQGMGFGGR 170
Query: 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY---------------- 172
++ R QG+ +T+ QE +RI GNL W +LQ ++Y AE++Y
Sbjct: 171 VSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAEQHYRFGFVTKIPNIDYCLV 230
Query: 173 MKALSLESDKNKQCNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLML 232
M+AL LE DKNK CNLAICL+R++RI EAKSLL VR S + + + F +
Sbjct: 231 MRALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDVRDSPAESECGD---EPFAKSYDRA 287
Query: 233 TELESQSMLQPTDYGEDKRKKILSSCTYINGSEENVS 269
E+ ++ ++ D +K + C+++N +EN++
Sbjct: 288 VEMLAE--IESKKPEADLSEKFYAGCSFVNRMKENIA 322
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| TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 128/247 (51%), Positives = 164/247 (66%)
Query: 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL 66
E FH IHKVP GDSPYVRAK QLVEKDP RAI LFW AINAGDRVDSALKDMA+VMKQ
Sbjct: 28 ESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMAIVMKQQ 87
Query: 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYXXXXXXXXXXXXXXXXXXXXXXVIACG 126
+R+EEAIEAIKS R C+D +QESLDN+LL+LY +A
Sbjct: 88 NRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQKGLAFN 147
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
GK TK ARSQG+K Q+++ QE +R+ GNL WA +Q++++ AE Y +ALS+ D NK C
Sbjct: 148 GKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAEDAYRRALSIAPDNNKMC 207
Query: 187 NLAICLIRLNRIAEAKSLLQAVR-ASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTD 245
NL ICL++ RI EAK L+ V+ A + +S+ K++E A ML +L S+ M + D
Sbjct: 208 NLGICLMKQGRIDEAKETLRRVKPAVVDGPRGVDSHLKAYERAQQMLNDLGSEMMRRGGD 267
Query: 246 YGEDKRK 252
++R+
Sbjct: 268 DKVEQRR 274
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| TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 140/267 (52%), Positives = 170/267 (63%)
Query: 4 KDEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVM 63
KD+ELFHVIHKVP GD+PYVRAK AQL+EK+P AI FW AIN GDRVDSALKDMAVVM
Sbjct: 22 KDDELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDRVDSALKDMAVVM 81
Query: 64 KQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYXXXXXXXXXXXXXXXXXXXXXXVI 123
KQLDRSEEAIEAIKSFR C+ +SQ+SLDNVL++LY
Sbjct: 82 KQLDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVELLKRKLRQIYQGE 141
Query: 124 ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183
A GK TK ARS G+K Q+T+ QE+SR+ GNL WAY+QQ Y SAE Y KA +E D N
Sbjct: 142 AFNGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAEAVYRKAQMVEPDAN 201
Query: 184 KQCNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQP 243
K CNLA+CLI+ R E + +L V R D+ ++ + A +L+ELES S+ +
Sbjct: 202 KSCNLAMCLIKQGRFEEGRLVLDDV-LEYRVLGADD--CRTRQRAEELLSELES-SLPRM 257
Query: 244 TDYG-EDKRKKILSSCTYINGSEENVS 269
D ED IL ++ G EE S
Sbjct: 258 RDAEMEDVLGNILDD-DFVLGLEEMTS 283
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| TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 119/271 (43%), Positives = 154/271 (56%)
Query: 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR 68
++V+HK+P GDSPYVRAK QLVEKD AI LFW AI A DRVDSALKDMA++MKQ +R
Sbjct: 20 YNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKDMALLMKQQNR 79
Query: 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYXXXXXXXXXXXXXXXXXXXXXXVIACGGK 128
+EEAI+AI+SFR LC+ +QESLDNVL++LY A GK
Sbjct: 80 AEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWMIYQGEAFNGK 139
Query: 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNL 188
TK ARS G+K Q+T+ +E SRI GNL WAY+Q DY +AE Y KA +E D NK CNL
Sbjct: 140 PTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAEAVYRKAQLIEPDANKACNL 199
Query: 189 AICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPTDYGE 248
CLI+ + EA+S+L R K + +L+EL+ Q
Sbjct: 200 CTCLIKQGKHDEARSIL--FRDVLMENKEGSGDPRLMARVQELLSELKPQEEEAAASVSV 257
Query: 249 DKRKKILSSCTYINGSEENVSRFMVPRKCRK 279
+ I + G +E V + P + R+
Sbjct: 258 ECEVGI-DEIAVVEGLDEFVKEWRRPYRTRR 287
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.127 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 479 457 0.00094 118 3 11 23 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 620 (66 KB)
Total size of DFA: 289 KB (2150 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.63u 0.17s 39.80t Elapsed: 00:00:02
Total cpu time: 39.64u 0.17s 39.81t Elapsed: 00:00:02
Start: Sat May 11 09:37:45 2013 End: Sat May 11 09:37:47 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.I.6079.1 | SubName- Full=Putative uncharacterized protein; (266 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 3e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 4e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 0.001 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 0.003 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQ-CNLAICLIRLNRIAEAKSLLQAV 208
NLA AY + YE A Y KAL L+ D K NL + +L + EA +
Sbjct: 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
NL Y + DY+ A YY KAL L+ D NLA +L + EA + +A
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE--KALE 62
Query: 213 RNEKMDESY 221
+ ++Y
Sbjct: 63 LDPDNAKAY 71
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 111 LLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170
L+ R+L +E + K+ ++AR G T R NLA YL DY+ A
Sbjct: 13 LVLRRLGDYDEALELLEKALELARELGEDHPETA-----RALNNLARLYLALGDYDEALE 67
Query: 171 YYMKALSL 178
Y KAL+L
Sbjct: 68 YLEKALAL 75
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Length = 78 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AYL+ Y+ A YY KAL L +
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPN 33
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Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AYL+ DY+ A YY KAL L+ +
Sbjct: 6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 7e-04
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA 201
NL A + DY+ A Y KAL L+ D + NLA+ ++L + E
Sbjct: 8 NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEE 56
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLES---DKNKQC-----NLAICLIRLNR 197
+L+ NLA + DY+ A KAL L + + + NLA + L
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 198 IAEAKSLLQ 206
EA L+
Sbjct: 62 YDEALEYLE 70
|
Length = 78 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
L YLQ DYE A+ YY KAL L+ +
Sbjct: 6 LLGQIYLQLGDYEEAKEYYEKALELDPN 33
|
Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD 181
NL AY + DYE A Y KAL L+ +
Sbjct: 6 NLGLAYYKLGDYEEALEAYEKALELDPN 33
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.003
Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 15/194 (7%)
Query: 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114
AL ++ ++++ L + EEA+E ++ D + + L EE +EL ++
Sbjct: 97 ALLNLGLLLEALGKYEEALELLEKAL-ALDPDPDLAEALLALGALYELGDYEEALELYEK 155
Query: 115 KLKKTEEVIACGGKSTKIARSQGRKTQ----ITLVQELSRISG--------NLAWAYLQQ 162
L+ E+ + + + L+++ +++ NL YL+
Sbjct: 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215
Query: 163 NDYESAERYYMKALSLESDKNKQC-NLAICLIRLNRIAEAKSLLQAVRASSRNEK-MDES 220
YE A YY KAL L+ D + NLA+ L+ L R EA L+ + + +
Sbjct: 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLA 275
Query: 221 YAKSFEHASLMLTE 234
A +L +
Sbjct: 276 LLLLLAEALELLEK 289
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Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.75 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.72 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.71 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.7 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.7 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.69 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.69 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.67 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.58 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.54 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.41 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.41 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.41 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.38 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.34 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.33 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.3 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.24 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.19 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.19 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.13 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.07 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.05 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.05 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.04 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.01 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.98 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.97 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.94 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.93 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.92 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.91 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.88 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.88 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.86 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.86 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.8 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.73 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.72 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.71 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.71 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.7 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.69 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.66 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.65 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.59 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.58 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.4 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.34 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.26 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.25 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.17 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.07 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.05 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.97 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.94 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.93 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.82 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.75 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.73 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.61 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.45 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.35 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.26 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.23 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.19 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.17 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.12 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.12 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.12 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.1 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.05 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.04 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.95 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.86 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.81 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.78 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.76 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.73 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.6 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.58 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.49 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.4 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.4 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.39 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.39 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.35 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.28 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.25 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.11 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.98 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.96 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.81 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.64 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.64 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.47 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 95.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.35 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 95.33 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.95 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.75 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.68 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 94.62 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.62 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.5 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.46 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.23 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.19 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.05 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 94.03 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.93 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.86 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.33 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.22 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 93.05 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.98 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.84 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.67 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.17 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 92.14 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.13 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.76 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.74 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.32 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 91.15 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 91.14 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.1 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.95 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.67 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.62 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 90.6 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.59 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 90.07 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 90.07 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.85 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 89.59 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.8 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 88.78 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 88.73 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.62 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 87.86 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 87.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 86.94 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 86.81 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.31 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 86.03 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.98 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.93 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.89 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 85.18 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 84.56 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 84.47 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 84.11 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 84.06 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 83.77 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 83.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.31 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.28 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.02 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.96 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 82.6 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 81.74 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.58 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.54 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.19 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 80.85 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.52 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 80.42 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 80.34 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=210.84 Aligned_cols=253 Identities=14% Similarity=0.119 Sum_probs=147.4
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
+++|+-.|.=...|++++.++-..+.+++|+..|.+|+...|+++.++-+||.+|..+|..|-||..|++++++.|+.++
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+.-+ |++.+...|+..+|..+|++||.+.|....... ..-+.|...+.++ +.+.|+.+.+++|||.+|
T Consensus 322 Ay~N--lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNN--LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIY 398 (966)
T ss_pred HHhH--HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHH
Confidence 3322 344555555666666666666555543221100 0001122122211 456677777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~e 234 (479)
.++|++++|+.+|+.||.|.|..+++++ +|.+|.++|+.++|+. +.+||.++|..+.+... .-+.-+...+++..
T Consensus 399 kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 7777777777777777777777777776 7777777777777777 77777777765554221 11333456677777
Q ss_pred HHhhhhcCCCChhhHHHHHhhhhhhhhcCCCC
Q 011721 235 LESQSMLQPTDYGEDKRKKILSSCTYINGSEE 266 (479)
Q Consensus 235 l~~a~~~~P~~~~~~~~~~~~~~~~~i~~~~~ 266 (479)
.+.+++++|+.+. +--|++.-...|..-.+
T Consensus 479 Y~~aLklkPDfpd--A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 479 YRTALKLKPDFPD--AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHccCCCCch--hhhHHHHHHHHHhcccc
Confidence 7777888887665 44455554444444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=210.94 Aligned_cols=243 Identities=17% Similarity=0.122 Sum_probs=195.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
.++-+...+|+.-.|+.+|.+|++++|++.+||++||.||...+.|++|+.+|.+++.+.|+++.++-+ ++.+|..+|
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN--la~iYyeqG 300 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGN--LACIYYEQG 300 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccc--eEEEEeccc
Confidence 344456678999999999999999999999999999999999999999999999999999998765433 457899999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.++-||..|++||++.|....... ..-..|..++.++ +.+.|..+++++|||++|.++|.+++|...|++
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka-L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA-LRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999887542211 1111333333332 678899999999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChhhH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYGED 249 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~~~ 249 (479)
|+++.|+.+.+++ ||.+|.++|++++|+. |.++|.+.|..+.+.. ...+.+++..++++-+.+++-.+|.--+
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae-- 457 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE-- 457 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH--
Confidence 9999999999988 9999999999999999 9999999998766422 3457789999999999999999997322
Q ss_pred HHHHhhhhhhhhcCCCCCcccccchh
Q 011721 250 KRKKILSSCTYINGSEENVSRFMVPR 275 (479)
Q Consensus 250 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 275 (479)
+..|+-+ |-.-.|||...+.+-
T Consensus 458 AhsNLas----i~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 458 AHSNLAS----IYKDSGNIPEAIQSY 479 (966)
T ss_pred HHhhHHH----HhhccCCcHHHHHHH
Confidence 4444322 233345555554443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-18 Score=184.25 Aligned_cols=201 Identities=11% Similarity=0.014 Sum_probs=156.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+...+.+++..|++++|+..|.+++.++|++..++..+|.++...|++++|+..|++++..+|+++...+ .+|.+
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~--~lg~~ 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY--HRAQL 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHH
Confidence 3445556667777788888888888888888888888888888888888888888888888888888765443 35677
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|...|++++|+.+|++++.++|. +..++.+||.++..+|++++|+..|++++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~--------------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPD--------------------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCcc--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888877544 4458899999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----------HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----------SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----------~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
.|+++..++ +|.+|..+|++++|+. +.+++.++|++..... ......++..+++..+++++.++|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 999999888 9999999999999999 9999999997533211 011112455556666777777788754
Q ss_pred h
Q 011721 247 G 247 (479)
Q Consensus 247 ~ 247 (479)
.
T Consensus 543 ~ 543 (615)
T TIGR00990 543 I 543 (615)
T ss_pred H
Confidence 3
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-17 Score=180.26 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=61.6
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE- 219 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~- 219 (479)
.+.|++..++.++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++..+|++.....
T Consensus 278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 445555556666666666666666666666666666666655544 6666666666666666 5555555555432111
Q ss_pred --HHHHHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhh
Q 011721 220 --SYAKSFEHASLMLTELESQSMLQPTDYGEDKRKKILS 256 (479)
Q Consensus 220 --~~~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~ 256 (479)
......++..+++..+..++...|++....+.+.+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 1122334445555555555555665554444444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=177.64 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=174.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.+......++...+..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|+++
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~ 144 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS 144 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 44556677777777777777777788888888888888888888888888888888888888888888888888888876
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc--------CCCchH----------------------------
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC--------GGKSTK---------------------------- 131 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~--------~~k~~~---------------------------- 131 (479)
.... .++.+|...|++++|+..|++++...|..... ......
T Consensus 145 ~a~~--~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFA--LHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHH--HHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 5433 35567788888888888887777665532100 000001
Q ss_pred -------HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 132 -------IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES----AERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 132 -------~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde----A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
.|...+.. .+.+.|+++.++++||.+|..+|++++ |+.+|+++++++|+++.++. ||.+|..+|+++
T Consensus 223 ~~~g~~~eA~~~~~~-al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 223 CAVGKYQEAIQTGES-ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHCCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 11111111 146678888999999999999999996 89999999999999998887 999999999999
Q ss_pred HHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 200 EAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 200 EAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+|+. +.+++.++|++..+... .....++..+++..+...+..+|.+.
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9999 88999999998764321 12334556666777777777788754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=175.31 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=157.5
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
..+.+++...|.....|+..+.+++..|++++|+.+|.+++..+|++..+++.+|.++...|++++|+..|++++.++|+
T Consensus 352 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 45667777888877788888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+....+ .++.+|.++|++++|+..|++++.++|.. +.+++++|.+|..+|++
T Consensus 432 ~~~~~~--~la~~~~~~g~~~eA~~~~~~al~~~P~~--------------------------~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 432 FIFSHI--QLGVTQYKEGSIASSMATFRRCKKNFPEA--------------------------PDVYNYYGELLLDQNKF 483 (615)
T ss_pred CHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------------hHHHHHHHHHHHHccCH
Confidence 876543 46789999999999999999999986543 34667777777777777
Q ss_pred HHHHHHHHHHHHcCCCCHHH-------HHHH-HHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHH
Q 011721 166 ESAERYYMKALSLESDKNKQ-------CNLA-ICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLT 233 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~a-------~nLG-~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~ 233 (479)
++|+.+|++|++++|++... ++.+ .++...|++++|+. +.+++.++|++..+.. ......++..+++.
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 77777777777777764311 1222 23333577777777 6777777776654311 11122344444445
Q ss_pred HHHhhhhcCCC
Q 011721 234 ELESQSMLQPT 244 (479)
Q Consensus 234 el~~a~~~~P~ 244 (479)
.++.++.+.+.
T Consensus 564 ~~e~A~~l~~~ 574 (615)
T TIGR00990 564 LFERAAELART 574 (615)
T ss_pred HHHHHHHHhcc
Confidence 55555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-16 Score=141.70 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+..++..|++++|+..|.+++..+|+...++..+|.++...|++++|++.|++++...|.+.... ..++.+|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVL--NNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999876543 3457889
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|++++|+..|++++...+. +....++.++|.+|...|++++|+.+|.+++.++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLY------------------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHcccHHHHHHHHHHHHhcccc------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999975211 1223478889999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++...+. +|.++...|++++|+. +.+++...|.+..
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 99998877 9999999999999999 8888888776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=171.96 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=169.8
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLV---------EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 76 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~---------~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~l 76 (479)
..+.+++...|....+|...+.+++. .+++++|+.++++|++++|++..++..+|.++...|++++|+..|
T Consensus 282 ~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 282 KLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34677788889887777766655432 245899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+++++++|+++..++ .++.+|..+|++++|+..|+++++++|... .++..++
T Consensus 362 ~~Al~l~P~~~~a~~--~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--------------------------~~~~~~~ 413 (553)
T PRK12370 362 KQANLLSPISADIKY--YYGWNLFMAGQLEEALQTINECLKLDPTRA--------------------------AAGITKL 413 (553)
T ss_pred HHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--------------------------hhHHHHH
Confidence 999999999987654 457889999999999999999999976532 2455667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----HHHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLE-SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----SYAKSFEHAS 229 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLd-Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~~~k~~~rA~ 229 (479)
.+++.+|++++|+..++++++.. |+++..+. ||.+|..+|++++|+. +.+.+...|.+..+.. .+...-+++.
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~ 493 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERAL 493 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHH
Confidence 77888999999999999999885 78887766 9999999999999999 7666666665433211 1222225777
Q ss_pred HHHHHHHhhhhcCCCChh
Q 011721 230 LMLTELESQSMLQPTDYG 247 (479)
Q Consensus 230 eaL~el~~a~~~~P~~~~ 247 (479)
..|..+.+.....|.+..
T Consensus 494 ~~l~~ll~~~~~~~~~~~ 511 (553)
T PRK12370 494 PTIREFLESEQRIDNNPG 511 (553)
T ss_pred HHHHHHHHHhhHhhcCch
Confidence 777777776665555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=178.61 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=132.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH------------HHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE------------SLDN 93 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~------------~l~~ 93 (479)
+.+++..|++++|+..|+++++.+|++..++..||.+|..+|++++|+.+|++++.++|++... ....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5667888999999999999999999999999999999999999999999999999999986421 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH-----
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAY----- 159 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay----- 159 (479)
.++.++...|++++|+..|++++.++|..... .......|...++.. +.+.|++..++..|+.+|
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a-L~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA-LRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhcCH
Confidence 34678899999999999999999997753210 011222333322222 345555555555444432
Q ss_pred -------------------------------------HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 160 -------------------------------------LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 160 -------------------------------------~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
...|++++|+.+|+++++++|+++..+. ||.+|..+|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 2356666666666666666666665544 66666666666666
Q ss_pred HH-HHHHHHhcCCCcc
Q 011721 202 KS-LLQAVRASSRNEK 216 (479)
Q Consensus 202 i~-l~kAL~l~P~n~~ 216 (479)
+. +.+++..+|+++.
T Consensus 515 ~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 515 DALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHcCCCCHH
Confidence 66 5556666665544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=174.93 Aligned_cols=232 Identities=12% Similarity=0.010 Sum_probs=170.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.. ......+.+....|++++|+..|++++...|.. .++..+|.++.+.|++++|+.+|++++..+|.+.
T Consensus 499 ~~~Al~~~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 499 WLQAEQRQPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHhCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 45566777753 223334455567899999999999987775554 4678899999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC--------CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG--------GKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~--------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.... .++..+...|++++|+..|+++++++|...... ......|....... +.++|+++.+++++|.++
T Consensus 577 ~l~~--~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A-L~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYW--WLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAA-LELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHH--HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 3322 233444566999999999999999988632111 11222333332222 678899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH---HHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY---AKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~---~k~~~rA~eaL~e 234 (479)
..+|++++|+.+|++|++++|+++.++. ||.+|..+|++++|+. +.+++.++|+++.+.+.. ...-.....+++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 9999999999999999 899999999887754321 1111224444555
Q ss_pred HHhhhhcCCC
Q 011721 235 LESQSMLQPT 244 (479)
Q Consensus 235 l~~a~~~~P~ 244 (479)
+......+|.
T Consensus 734 ~~r~~~~~~~ 743 (987)
T PRK09782 734 VGRRWTFSFD 743 (987)
T ss_pred HHHHhhcCcc
Confidence 5555555665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-15 Score=164.49 Aligned_cols=229 Identities=19% Similarity=0.160 Sum_probs=140.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....+...+.++...|++++|+..|.+++..+|++..++..++.++...|++++|+..++.+....|.++.. ...
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~ 708 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG--FEL 708 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH--HHH
Confidence 333333333444444444444444444444444444444444444444444444444444444444444444322 223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhc--------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIAC--------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~--------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
++.+|...|++++|+..|++++...|..... .......|....... +...|++..+++.+|.+|..+|+++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 4567777777888888887777776543110 001112222211111 4567888889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSML 241 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~ 241 (479)
+|+.+|+++++.+|+++..++ ||.++...|+ .+|+. +.+++.+.|++...... .....++..+++..+++++..
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988887 9999999999 88999 88899999888664221 122335566666677777777
Q ss_pred CCCChh
Q 011721 242 QPTDYG 247 (479)
Q Consensus 242 ~P~~~~ 247 (479)
+|.+..
T Consensus 867 ~~~~~~ 872 (899)
T TIGR02917 867 APEAAA 872 (899)
T ss_pred CCCChH
Confidence 887655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=153.69 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=147.6
Q ss_pred CccchHH-HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 011721 1 MRWKDEE-LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF 79 (479)
Q Consensus 1 ~~~~~~~-~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka 79 (479)
|||+-++ .++...+.. .-|.. +..++..+++++|+..|.+++..+|++..++..+|.++...|++++|+..++++
T Consensus 20 ~~~~~~~~~~~~~~~~~---~~y~~-g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 95 (389)
T PRK11788 20 GRRSARQDQQKESNRLS---RDYFK-GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL 95 (389)
T ss_pred Hhchhhhhhhhhhhhcc---HHHHH-HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4676554 665554433 34444 456778899999999999999999999889999999999999999999999988
Q ss_pred HHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhH
Q 011721 80 RCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 80 l~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
+...+.... ......++.+|...|++++|+..|+++++..|..... .......|....... +...|.+
T Consensus 96 l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~ 174 (389)
T PRK11788 96 LSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL-EKLGGDS 174 (389)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH-HHhcCCc
Confidence 875332221 2234556789999999999999999999875542210 011222232222211 2222322
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 149 -----SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 149 -----~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
..++..+|.++..+|++++|+.+|+++++++|++..++. ||.+|...|++++|+. +.+++..+|.+
T Consensus 175 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 175 LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 235667888888888888888888888888888777666 8888888888888888 77777777764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=176.77 Aligned_cols=230 Identities=14% Similarity=0.096 Sum_probs=173.0
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH------------------------
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVV------------------------ 62 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v------------------------ 62 (479)
.+.+++...|.....+...+.+++..|++++|+.+|+++++.+|++..++..++.+
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 35566777787777777788899999999999999999999999877766555443
Q ss_pred ------------------HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 63 ------------------MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 63 ------------------L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
+...|++++|++.|++++.++|+++... ..++.+|..+|++++|+..|++++++.|....
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~--~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLT--YRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 4567999999999999999999987654 44678899999999999999999998775321
Q ss_pred c--------C-CCchHHHHhhc-----------------------------------hhHH----HhhhhhHHHHHHHHH
Q 011721 125 C--------G-GKSTKIARSQG-----------------------------------RKTQ----ITLVQELSRISGNLA 156 (479)
Q Consensus 125 ~--------~-~k~~~~A~~~g-----------------------------------~k~~----l~L~pe~~~al~nLG 156 (479)
. . ......|..+. +... +...|+++.++.+||
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 0 0 01111111110 0000 334577778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----H--HHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----S--YAKSFEHA 228 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~--~~k~~~rA 228 (479)
.+|.++|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++...|++..+.. . ....+++|
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA 690 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAA 690 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999887 9999999999999999 8888888888765422 1 12334555
Q ss_pred HHHHHHHHhh
Q 011721 229 SLMLTELESQ 238 (479)
Q Consensus 229 ~eaL~el~~a 238 (479)
.+++..+...
T Consensus 691 ~~~~~~al~~ 700 (1157)
T PRK11447 691 QRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHhhh
Confidence 5555554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-15 Score=149.89 Aligned_cols=239 Identities=17% Similarity=0.099 Sum_probs=176.4
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
+.+.+++...|.....+...+.++...|++++|+..+.+++...+.. ..++..+|.+|...|++++|+..|++++.
T Consensus 56 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 56 DLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 35667777778776677778888899999999999999988754332 24678899999999999999999999998
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--------------cCCCchHHHHhhchhHHHhhhhh
Q 011721 82 LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--------------CGGKSTKIARSQGRKTQITLVQE 147 (479)
Q Consensus 82 l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--------------~~~k~~~~A~~~g~k~~l~L~pe 147 (479)
..|.+... ...++.+|...|++++|++.|+++++..|.... ........|.....+. +.+.|+
T Consensus 136 ~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~ 212 (389)
T PRK11788 136 EGDFAEGA--LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA-LAADPQ 212 (389)
T ss_pred CCcchHHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhHCcC
Confidence 88876543 345678899999999999999999987654210 0112223333333222 456777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--HHH
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--SYA 222 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~~~ 222 (479)
...++..+|.+|...|++++|+.+|+++++++|++. ..++ |+.+|...|++++|+. +.+++...|+...... ...
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~ 292 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL 292 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 788999999999999999999999999999999875 4566 9999999999999999 8888999887643211 111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..++..+...|++..
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 2223444555555556666787543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=171.95 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=177.7
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 18 GDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 18 ~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
....+...+.++.. +++++|+..|.+++...|+.. .+..+|.++...|++++|+..|++++...|.+. .. ..++.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~--~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DL--LAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HH--HHHHH
Confidence 45566777766664 899999999999999888754 466778888999999999999999877766643 22 34567
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcC------C---CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACG------G---KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~------~---k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
++...|++++|+.+|++++.+.|...... . .....|..+.... +.+.|+ ..++.++|.++.++|++++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999999976543211 0 2233444333333 577886 88999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCC
Q 011721 169 ERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P 243 (479)
+.+|+++++++|+++.+++ ||.+|..+|++++|+. +.+++.++|+++.+... .....++..+++..+++++.++|
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999887 9999999999999999 99999999999875332 23445667778888888888899
Q ss_pred CChh
Q 011721 244 TDYG 247 (479)
Q Consensus 244 ~~~~ 247 (479)
....
T Consensus 709 ~~a~ 712 (987)
T PRK09782 709 NQAL 712 (987)
T ss_pred CCch
Confidence 7653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-15 Score=135.48 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=149.0
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++...|.+..++.++|.++...|++++|+..|++++...+..
T Consensus 53 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 132 (234)
T TIGR02521 53 NLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP 132 (234)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 34556777788777878888899999999999999999999999999999999999999999999999999998764322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
........++.+|...|++++|+..|.+++...|. +..++..+|.++...|+++
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--------------------------RPESLLELAELYYLRGQYK 186 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------------------ChHHHHHHHHHHHHcCCHH
Confidence 12223344678999999999999999999988554 2347889999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
+|+.++++++.+.|+++..+. ++.++...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999998887776 99999999999999995443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-15 Score=148.65 Aligned_cols=202 Identities=13% Similarity=-0.014 Sum_probs=152.0
Q ss_pred HHHHHHHhhCCCCC----cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGD----SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 6 ~~~~~~v~k~p~~~----~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
.++..++.+.|-.+ ..|...+.++...|++++|+..|.++++.+|++..+++.+|.++...|++++|++.|+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35567776655443 34667778888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--------cCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 82 LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--------CGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 82 l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--------~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
++|++.....+ +|.+|...|++++|+..|+++++++|.... ........|........ ...++..+.
T Consensus 127 l~P~~~~a~~~--lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~---~~~~~~~~~ 201 (296)
T PRK11189 127 LDPTYNYAYLN--RGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY---EKLDKEQWG 201 (296)
T ss_pred hCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH---hhCCccccH
Confidence 99998776544 567899999999999999999999886421 01122233333322211 111122232
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-------HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 154 NLAWAYLQQNDYESAERYYMKA-------LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKA-------LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+.++..+|++.++ ..+..+ ++++|+...++. ||.+|..+|++++|+. +.+++.++|.+
T Consensus 202 -~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 202 -WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 46777778887554 233333 366777777777 9999999999999999 89999999854
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=159.88 Aligned_cols=226 Identities=20% Similarity=0.146 Sum_probs=163.9
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|++.|++++..+|.+...
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 34455566666667777788888888888888888888888888888888888888888888888888888888887654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
. ..++.+|...|++++|+..|++++...|..... .......|....... +...|.+..++..+|.+|.
T Consensus 536 ~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 536 I--LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA-ADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 3 345677888888888888888888877653210 011222332222221 3455777788889999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHHHHHH
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHASLML 232 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA~eaL 232 (479)
..|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++..+|++..... ...+.++.|..++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999998887777 8999999999999999 8888888888755321 1123445555555
Q ss_pred HHHHhh
Q 011721 233 TELESQ 238 (479)
Q Consensus 233 ~el~~a 238 (479)
..+...
T Consensus 693 ~~~~~~ 698 (899)
T TIGR02917 693 KSLQKQ 698 (899)
T ss_pred HHHHhh
Confidence 555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=165.57 Aligned_cols=185 Identities=12% Similarity=-0.006 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~---------GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
+++++|+.+|++|++++|++..++..+|.+|... +++++|+..++++++++|+++.++. .++.++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~--~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALG--LLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHcc
Confidence 4578999999999999999999999999887633 4589999999999999999987654 4567899999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
++++|+..|++|++++|. ++.+++++|.+|..+|++++|+.+|++|++++|+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~--------------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI--------------------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred CHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999998554 445899999999999999999999999999999998
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc-CCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRAS-SRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~-P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
..+. ++.++..+|++++|+. +.+++... |+++.... ......++..++...+.+..+..|..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 7655 6777888999999999 88888775 55554221 11222234444444444445555653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=165.98 Aligned_cols=218 Identities=18% Similarity=0.125 Sum_probs=158.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-------------------------
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA------------------------- 84 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P------------------------- 84 (479)
+..-+..+|+..|.+.-...++....+..+|..|+++++|++|..+|+.+..+.|
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 4445667788888773344555566777788888888888888888776655444
Q ss_pred ---------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-h--cCC------CchHHHHhhchhHHHhhhh
Q 011721 85 ---------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-A--CGG------KSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 85 ---------~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-a--~~~------k~~~~A~~~g~k~~l~L~p 146 (479)
+.++.+ .++|++|.-+++++.||.+|++|+.++|... + +.| ...+.|...++++ +.++|
T Consensus 410 aq~Li~~~~~sPesW--ca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-l~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESW--CALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-LGVDP 486 (638)
T ss_pred HHHHHhhCCCCcHHH--HHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh-hcCCc
Confidence 334433 4677888888999999999999998888532 1 111 1122333333333 56788
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HH
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SY 221 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~ 221 (479)
.+-.||+.||.+|+++++++.|+-+|++|++|+|.+....- +|.++.++|+.++|+. +.+|+.++|.|+..-. ..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 88899999999999999999999999999999999987655 9999999999999999 9999999999976422 22
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChhhHH
Q 011721 222 AKSFEHASLMLTELESQSMLQPTDYGEDK 250 (479)
Q Consensus 222 ~k~~~rA~eaL~el~~a~~~~P~~~~~~~ 250 (479)
+..+.+-.++|.+|+.-..+.|++..+.+
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 34445555666666666666787555333
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-16 Score=165.81 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=172.5
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.-.|..+-.....|..+-.++|.+.|+.+|++||.++|++.-||..+|.-+.....||.|..+|+.++..+|++-.++
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 34556666666667777788899999999999999999999999999999999999999999999999999999976665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+ +||.+|.++++++.|+-+|++|+.++|.... ++..+|.++.++|+.++|+.
T Consensus 493 Y--GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv--------------------------i~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 493 Y--GLGTVYLKQEKLEFAEFHFQKAVEINPSNSV--------------------------ILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred H--hhhhheeccchhhHHHHHHHhhhcCCccchh--------------------------HHhhhhHHHHHhhhhhHHHH
Confidence 5 4678999999999999999999999877543 67889999999999999999
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH---HHHHHHHHHHHHHHHhhhhcCCC
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY---AKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~---~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
+|++|+.++|.++-... .|.+|..+++++||+. +++.-++.|++....... -+.++....++.++-=+..++|.
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999986654 9999999999999999 777778888876532221 24455666777777777777774
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-14 Score=136.64 Aligned_cols=164 Identities=19% Similarity=0.140 Sum_probs=142.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
+.++.-++..||+..|...+++||+.+|++..++..+|.+|...|..+.|-+.|++++.++|++.+...+ .|..++.+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN--YG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN--YGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh--hhHHHHhC
Confidence 3445567899999999999999999999999999999999999999999999999999999999875433 46778899
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
|++++|...|++|+.. |. -++.+..+-|+|.+.+++|+++.|.++|+++|+++|++
T Consensus 117 g~~~eA~q~F~~Al~~-P~-----------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 117 GRPEEAMQQFERALAD-PA-----------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CChHHHHHHHHHHHhC-CC-----------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 9999999999999975 11 12334589999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 183 NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 183 a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+.... |+..++..|+|-.|.. +.+-...-+
T Consensus 173 ~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 173 PPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 98877 9999999999999999 444444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=138.85 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=139.2
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.++.+++...|.....|...+.++...|++++|+..|.++++++|++..++.++|.++...|++++|++.|++++.++|+
T Consensus 85 ~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 85 NDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 45778888899888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-hhH----Hh--cCCCch-HHHHhhch---hHHHhhhhhHHHHHHH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT-EEV----IA--CGGKST-KIARSQGR---KTQITLVQELSRISGN 154 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~-p~~----la--~~~k~~-~~A~~~g~---k~~l~L~pe~~~al~n 154 (479)
++...+ ...++...+++++|+..|.+++... +.. .. ..+... ..+..... ...+.+.|...++|++
T Consensus 165 ~~~~~~---~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 165 DPYRAL---WLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFY 241 (296)
T ss_pred CHHHHH---HHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 874222 1234567889999999998877653 221 10 011111 11111110 1113567778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLES-DKNKQCN 187 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdP-dna~a~n 187 (479)
||.+|.++|++++|+.+|++|++++| ++..+..
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 99999999999999999999999997 5555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-14 Score=148.97 Aligned_cols=205 Identities=19% Similarity=0.132 Sum_probs=170.5
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
++|..-|..+.+..-.+-.++.-+.+.+|..+|-||..++|.+..++...|..+...|..|+|+.+|..|-++.|.--..
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 56888999999988888778888999999999999999999999999999999999999999999999999999875333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHH---hhhhhH---HHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQI---TLVQEL---SRISGN 154 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l---~L~pe~---~~al~n 154 (479)
.+ .+|.-|.+.+.+.-|..+|.+|+.+.|..... ..+....|...+....+ ++.++. ...+.|
T Consensus 383 ~L--Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 383 SL--YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HH--HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 33 35567999999999999999999999865321 11223355544444321 122222 245899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
||.+|.+++.|++|+.+|++||.+.|.++.++. +|.+|..+|+++.|+. +-+||.++|+|.-
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999988 9999999999999999 9999999998844
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-14 Score=149.49 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=162.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..||..++ .++..|+..+|+-+|+.|++.+|.+.+|+..||++....++=..||.+++++++++|++-++.+ +|+..
T Consensus 286 pdPf~eG~-~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLm--aLAVS 362 (579)
T KOG1125|consen 286 PDPFKEGC-NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALM--ALAVS 362 (579)
T ss_pred CChHHHHH-HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHH--HHHHH
Confidence 56887775 6888999999999999999999999999999999999999999999999999999999977654 46788
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCC----Cc-------h---HHHHhhchhHH-Hhhhh--hHHHHHHHHHHHHHH
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGG----KS-------T---KIARSQGRKTQ-ITLVQ--ELSRISGNLAWAYLQ 161 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~----k~-------~---~~A~~~g~k~~-l~L~p--e~~~al~nLG~ay~~ 161 (479)
|...|.-.+|+.+|.+=|...|.-..... .. . ..+...-.... ....| .+++++.-||.+|..
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999999999999999988765321110 00 0 00000000000 12234 567899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
.|+|+.|+.||+.||..+|+|...+| ||..|..-.+.+||+. |.+||.+.|..+.+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 99999999999999999999999999 9999999999999999 99999999998775
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-14 Score=147.17 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=157.3
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..|+-++|.-.|...++|++.+.+++...+.++-...|.+|..++|.+++.|+..|.++.-+++|++|+.-|++++.++|
T Consensus 346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 35777788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
+++..++.. +.+..++++++++...|+.+++..|.. ++++...|.++..+++
T Consensus 426 e~~~~~iQl--~~a~Yr~~k~~~~m~~Fee~kkkFP~~--------------------------~Evy~~fAeiLtDqqq 477 (606)
T KOG0547|consen 426 ENAYAYIQL--CCALYRQHKIAESMKTFEEAKKKFPNC--------------------------PEVYNLFAEILTDQQQ 477 (606)
T ss_pred hhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCC--------------------------chHHHHHHHHHhhHHh
Confidence 887655543 345667788888888888888876653 3578888889999999
Q ss_pred HHHHHHHHHHHHHcCCC------CHHHHH-HHHH-HHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSLESD------KNKQCN-LAIC-LIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLML 232 (479)
Q Consensus 165 ydeA~~~yrKALeLdPd------na~a~n-LG~~-L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL 232 (479)
|++|++.|.+|++|.|. ++..+. -|.+ +.-.+++.+|+. +.+|++++|....+.. ...-..++..+++
T Consensus 478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999988 444332 3332 234588899999 8888999987655432 1122335556666
Q ss_pred HHHHhhhhc
Q 011721 233 TELESQSML 241 (479)
Q Consensus 233 ~el~~a~~~ 241 (479)
.-|++..-+
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 666655433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=128.69 Aligned_cols=124 Identities=7% Similarity=-0.042 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 39 ISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 39 i~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
..+|.+++.++|+. +..+|.++...|++++|+..|++++.++|.+...+. .+|.++..+|++++|+..|++++.+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHI--ALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35777888887764 556788888888888888888888888887654432 3445666666666666666666665
Q ss_pred chhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 119 TEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 119 ~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
+| +++.+++++|.+|..+|++++|+..|++|++++|+++..+. +|.+..
T Consensus 88 ~p--------------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DA--------------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CC--------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 23346666666666666666666666666666666665554 555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=152.50 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=163.8
Q ss_pred HHHHhhCCCCCcHHHHH----HHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 9 FHVIHKVPAGDSPYVRA----KRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a----~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
.....+.|....-+..+ ..+.+..+++++|+..|+++++.++.. ..+...+|.+|..+|++++|+.+|++++..+
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 33445667654433332 224567799999999999999876432 2344557999999999999999999999988
Q ss_pred CCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH---HhcCCCchHHHHhhchhHHHhhhhh--HHHHHHHHH
Q 011721 84 ADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV---IACGGKSTKIARSQGRKTQITLVQE--LSRISGNLA 156 (479)
Q Consensus 84 P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~---la~~~k~~~~A~~~g~k~~l~L~pe--~~~al~nLG 156 (479)
|.++. ......|+.+|..+|++++|+..+++++...|.. ..... ..|+ ...++..+|
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----------------~~p~~~~~~a~~~~a 366 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----------------SIPNDDWLQGQSLLS 366 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----------------CCCCchHHHHHHHHH
Confidence 87621 1112234456899999999999999999988742 11100 0122 234778999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHA 228 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA 228 (479)
.++...|++++|+..|++++...|++...+. +|.++...|++++|+. +.+++.++|++..... .....+++|
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999999998887 9999999999999999 8999999999865322 123456777
Q ss_pred HHHHHHHHhhhhcCCCChh
Q 011721 229 SLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~ 247 (479)
..++..+.+..+.+|..+.
T Consensus 447 ~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 447 DVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 7777776666555554333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-13 Score=128.44 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVL 95 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~---~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aL 95 (479)
..+...+..++..|++++|+..|.+++...|+.. .+++.+|.+|...|++++|+..|++++..+|+++... ..+.+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 3455666778889999999999999999888754 6789999999999999999999999999999876531 12335
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 96 LELYKRS--------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 96 g~lY~kl--------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+.+|... |++++|+..|++++..+|..... ..+.... ..+..........+|.+|..+|++.+
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~a~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-----PDAKKRM----DYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 6677765 88999999999999998874321 0111000 01111222345689999999999999
Q ss_pred HHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 011721 168 AERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRAS 211 (479)
Q Consensus 168 A~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~ 211 (479)
|+..|++++...|+++ .++. +|.++..+|++++|+.+.+.+..+
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988764 5666 999999999999999966666544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=142.88 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=169.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
++.+++.-.|++++.|...+++.+..+++++|+.-|.+++.++|.+.-++..++.++.++++++++...|+.++...|+-
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~ 461 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC 461 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67778888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH-HHHcCCH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA-YLQQNDY 165 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a-y~~lGdy 165 (479)
++.. +..+.++..++++++|++.|.+|+.+.|......- ++..+.+-|.+ +.=.+++
T Consensus 462 ~Evy--~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v--------------------~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 462 PEVY--NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV--------------------NAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred chHH--HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc--------------------cchhhhhhhHhhhchhhhH
Confidence 7653 34568899999999999999999999876221000 00012222222 1233899
Q ss_pred HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 166 ESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
..|+.+++||+++||....++. ||.+.+++|+.++|+. +.+++.+...-. .-.+.-+|..|..+-..+.+++.+.+
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~--E~~~a~s~aeAAraq~~vtkK~~~~~ 597 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES--EMVHAYSLAEAARAQIAVTKKYGLTL 597 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhhhHHHHHHhcccH
Confidence 9999999999999999999998 9999999999999999 888887764321 11344555565555555555655444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-13 Score=140.87 Aligned_cols=199 Identities=21% Similarity=0.173 Sum_probs=161.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
+-..++.++|+.+|++|++++|+...++..||.-|....+...|++.|+.|+.++|.|-.+++ +||..|.-++.+.=|
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY--GLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY--GLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh--hhhHHHHHhcchHHH
Confidence 445678899999999999999999999999999999999999999999999999999876665 477899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN- 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n- 187 (479)
+-+|++|+.. .|.+...|..||.+|.++++.++|+++|.+|+...-.+..++.
T Consensus 418 LyYfqkA~~~--------------------------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 418 LYYFQKALEL--------------------------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred HHHHHHHHhc--------------------------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999987 4667789999999999999999999999999999988888888
Q ss_pred HHHHHHHcCCHHHHHH-HHHHHHhc-------CCCccchH---HH---HHHHHHHHHHHHHHHhhhhcCCCChhhHHHHH
Q 011721 188 LAICLIRLNRIAEAKS-LLQAVRAS-------SRNEKMDE---SY---AKSFEHASLMLTELESQSMLQPTDYGEDKRKK 253 (479)
Q Consensus 188 LG~~L~~lGr~dEAi~-l~kAL~l~-------P~n~~a~~---~~---~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~ 253 (479)
||.+|-++++..+|.. +.+-+... |+-.++-. .+ .+.|++|.......... +++.+....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------~~e~eeak~ 545 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------CchHHHHHH
Confidence 9999999999999999 88877643 21111100 11 24456665554443322 333556667
Q ss_pred hhhhhhhh
Q 011721 254 ILSSCTYI 261 (479)
Q Consensus 254 ~~~~~~~i 261 (479)
++..+.++
T Consensus 546 LlReir~~ 553 (559)
T KOG1155|consen 546 LLREIRKI 553 (559)
T ss_pred HHHHHHHh
Confidence 77777653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-14 Score=148.72 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=157.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC-
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD- 86 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d- 86 (479)
++-+|++.|........+|.++...++-..||..++++++++|++..++..||+.|...|.-.+|..+|.+-+...|..
T Consensus 308 fEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~ 387 (579)
T KOG1125|consen 308 FEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYV 387 (579)
T ss_pred HHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccch
Confidence 3455999999999999999999988889999999999999999999999999999999999999999998865543311
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC
Q 011721 87 ----------------------------------------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 87 ----------------------------------------a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~ 126 (479)
.+..+..+||.+|.-.|.|+.|+.+|+.||...
T Consensus 388 ~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~------- 460 (579)
T KOG1125|consen 388 HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK------- 460 (579)
T ss_pred hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-------
Confidence 112244567788999999999999999998874
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHcCCHHHHHH-H
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-CNLAICLIRLNRIAEAKS-L 204 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a-~nLG~~L~~lGr~dEAi~-l 204 (479)
|++...|+.||-.+..-.+.++|+..|++||+|.|.+..+ ||||++++.+|.|+||+. +
T Consensus 461 -------------------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 461 -------------------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred -------------------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 4455699999999999999999999999999999999976 569999999999999999 9
Q ss_pred HHHHHhcCCC
Q 011721 205 LQAVRASSRN 214 (479)
Q Consensus 205 ~kAL~l~P~n 214 (479)
+.||.+.+.+
T Consensus 522 L~AL~mq~ks 531 (579)
T KOG1125|consen 522 LEALSMQRKS 531 (579)
T ss_pred HHHHHhhhcc
Confidence 9999988774
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=147.94 Aligned_cols=188 Identities=13% Similarity=0.004 Sum_probs=139.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
+..+.+++..|++++|+.+|++++..+|.. ......|+.++.++|++++|+..++++....|...... +..
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~-----~~~ 350 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLY-----GSP 350 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeec-----CCC
Confidence 335678899999999999999999887765 35677888899999999999999999999988753210 000
Q ss_pred HHHcC--CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 99 YKRSK--RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 99 Y~klG--r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
...- .+.++...+-.++.. ......|....... +...|++..++..+|.++...|++++|+..|++|+
T Consensus 351 -~~~p~~~~~~a~~~~a~~l~~--------~g~~~eA~~~l~~a-l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 351 -TSIPNDDWLQGQSLLSQVAKY--------SNDLPQAEMRAREL-AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred -CCCCCchHHHHHHHHHHHHHH--------cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0000 111222222222221 12233444433332 56789999999999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASL 230 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~e 230 (479)
+++|++...+. +|.+++.+|++++|.. +.+.++..|+++. ...++++.+
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~-----~~~~~~~~~ 471 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG-----VQRLARARD 471 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHH
Confidence 99999998877 9999999999999999 8899999999875 344555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=123.49 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHH
Q 011721 73 IEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRIS 152 (479)
Q Consensus 73 ie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al 152 (479)
..+|++++.++|++. ..++.++...|++++|+.+|++++.++| .+..++
T Consensus 13 ~~~~~~al~~~p~~~-----~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------~~~~a~ 61 (144)
T PRK15359 13 EDILKQLLSVDPETV-----YASGYASWQEGDYSRAVIDFSWLVMAQP--------------------------WSWRAH 61 (144)
T ss_pred HHHHHHHHHcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------------CcHHHH
Confidence 357899999999752 2356788999999999999999998854 445699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|.++..+|++++|+.+|++|++++|+++.++. +|.+|..+|++++|+. +.+++.+.|+++.
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999998877 9999999999999999 9999999999865
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-13 Score=148.02 Aligned_cols=173 Identities=14% Similarity=0.065 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRK 115 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekA 115 (479)
.+++.........-|++.+++.+||.+..+.|++++|+..++.+++++|++..+..++ +.++.+++++++|+..++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~--a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM--LRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH--HHHHHHhccHHHHHHHHHHH
Confidence 3334333333445677889999999999999999999999999999999998877654 57899999999999999999
Q ss_pred HHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH
Q 011721 116 LKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIR 194 (479)
Q Consensus 116 Lkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~ 194 (479)
+... |+++.+++++|.++.++|+|++|+.+|+++++.+|+++.++. +|.+|..
T Consensus 147 l~~~--------------------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 147 FSGG--------------------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred hhcC--------------------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9884 445569999999999999999999999999999999999887 9999999
Q ss_pred cCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Q 011721 195 LNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236 (479)
Q Consensus 195 lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~ 236 (479)
+|+.++|.. |.+++.......+.....+..+..-..+|+.++
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLG 243 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 999998876554422223333333444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=121.83 Aligned_cols=151 Identities=14% Similarity=0.080 Sum_probs=122.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
-.|+.-|+++.......+... |.. -+...++.++++..+++++..+|+++..++. ||.+|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~--~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~--Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD--PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWAL--LGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC--ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHCCCHH
Confidence 457777888776554422211 110 1223778899999999999999999876654 678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY-LQQND--YESAERYYMKALSLESDKN 183 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay-~~lGd--ydeA~~~yrKALeLdPdna 183 (479)
+|+..|++|+++.| +++.++.++|.++ ...|+ +++|+..|+++++++|+++
T Consensus 91 ~A~~a~~~Al~l~P--------------------------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 91 NALLAYRQALQLRG--------------------------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 99999999999854 4556899999975 78788 5999999999999999999
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.++. ||.++..+|++++|+. +.+++.++|.+..
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9887 9999999999999999 8899999987654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=135.14 Aligned_cols=203 Identities=24% Similarity=0.201 Sum_probs=94.5
Q ss_pred CCCcHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011721 17 AGDSPYV-RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVL 95 (479)
Q Consensus 17 ~~~~pyv-~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aL 95 (479)
.++.-|. ..+.+....++++.|+..|++.+..++..+..+..++.+ ...+++++|+.+++++....++. .. + ..+
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~~-l-~~~ 116 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-RY-L-LSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-ch-h-hHH
Confidence 3343443 355667778999999999999999988888888888888 79999999999999887766542 22 2 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|...|+++++...++++....+ .+.++.++..+|.++.+.|++++|+.+|++|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPA------------------------APDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999875311 1234568899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++++|+++...+ |+.+++..|+++++.. +.......|.++.... .....+++..++|..+++.+..+|+|+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 999999999888 9999999999999888 5555555566655422 1224456777777778888888999887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-12 Score=134.42 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=171.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-H-HHHHH--
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-E-SLDNV-- 94 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~-~l~~a-- 94 (479)
..++..++.+.+...+++.|+..|.+++.++ .+...+.+.+.+|...|.+.+.+..+..+++..-.... . .+...
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 4577788888999999999999999999999 77778899999999999999999998887765433211 0 01111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC-chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 95 -LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK-STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 95 -Lg~lY~klGr~deAie~lekALkl~p~~la~~~k-~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+|..|.+.|+++.|+.+|+++|.-.......... ....+...... ..-++|+...--..-|+.++..|+|.+|+.+|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~-~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER-KAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH-HHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4568999999999999999999764331111110 00111111110 13456666666677799999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.+||..+|+++..|- .|.||..+|.+.+|+. +..+++++|++..+.. ..+..+.+...++..+..++.++|...+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 999999999998875 9999999999999999 9999999999877532 1223344444555666668888998666
Q ss_pred hHHHHHh
Q 011721 248 EDKRKKI 254 (479)
Q Consensus 248 ~~~~~~~ 254 (479)
++..+
T Consensus 462 --~~~~~ 466 (539)
T KOG0548|consen 462 --AIDGY 466 (539)
T ss_pred --HHHHH
Confidence 44443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=123.89 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCC--HHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL-YKRSKR--IEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l-Y~klGr--~deA 108 (479)
.++.++++..+++++..+|++..++..||.+|...|++++|+.+|++++.++|+++..... ++.+ |...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~--lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAA--LATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCCCcHHH
Confidence 4677999999999999999999999999999999999999999999999999999877654 4454 578888 5999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
+..|+++++++|. +..++++||.++.++|+|++|+.+|+++++++|.+...
T Consensus 130 ~~~l~~al~~dP~--------------------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN--------------------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC--------------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999998554 44599999999999999999999999999999887643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=128.98 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=37.5
Q ss_pred hhhhhHH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 011721 143 TLVQELS--RISGNLAWAYLQQNDYESAERYYM--KALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 143 ~L~pe~~--~al~nLG~ay~~lGdydeA~~~yr--KALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL 208 (479)
...|+++ .++..+|++++++|++++|.++|+ ++++++|++.....||.++.++|+.++|.. +.+++
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555 555566666666666666666666 355555655543346666666666666655 44443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=137.15 Aligned_cols=180 Identities=22% Similarity=0.238 Sum_probs=144.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC--- 83 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~--- 83 (479)
.|.-.........++...|++++|+.+++.|+.. .+.....+..+|.+|..+++|++|+.+|++++.+-
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3433344445677888999999999999999986 55566667779999999999999999999988763
Q ss_pred --CCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 84 --ADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 84 --P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
++++. +...+-|+.+|.+.|++++|..++++|++|..+... ...++.+..+.+++.++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~------------------~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG------------------ASHPEVAAQLSELAAILQ 336 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc------------------cChHHHHHHHHHHHHHHH
Confidence 44443 233344778999999999999999999999766322 123445568999999999
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 161 QQNDYESAERYYMKALSL-----ESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeL-----dPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.++++++|+.+|++++++ .+++ +..++ ||.+|..+|+|+||.. +.+||....
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 999999999999999997 3455 24565 9999999999999999 888987764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=129.85 Aligned_cols=196 Identities=22% Similarity=0.192 Sum_probs=77.9
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+++...+.+..-+.+...+ +..+++++|+.++.++.+..+ .+..+..+..++...++++++...++++....+.....
T Consensus 69 ~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 69 KLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 3444455555555566655 688999999999998887554 34566677788999999999999999987655222223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
.+...++.+|.+.|+.++|+..|++||+++|..... .......+....... ....|.++.++..+|.+|.
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~-~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL-LKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH-HHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HHHCcCHHHHHHHHHHHhc
Confidence 344556789999999999999999999998764310 001111111110000 1112444556666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.+|++++|+.+|++++..+|+|+.... +|.+|...|++++|.. ..+++
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666666666666666666666666554 6666666666666666 44443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-11 Score=126.26 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=138.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH--
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI-- 105 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~-- 105 (479)
....+..++|+..+.++|.++|++..++...+.++..+| ++++|+..+.+++..+|++.+++.+. +.++.++|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R--~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR--RWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH--HHHHHHcCchhh
Confidence 445678999999999999999999999999999999999 68999999999999999998776544 3456677774
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
++++.++.++|.++|+ +..+|.++|+++..+|+|++|++++.++|+++|.|..+
T Consensus 125 ~~el~~~~kal~~dpk--------------------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 125 NKELEFTRKILSLDAK--------------------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 6788888888887554 44599999999999999999999999999999999999
Q ss_pred HH-HHHHHHHc---CCH----HHHHH-HHHHHHhcCCCccc
Q 011721 186 CN-LAICLIRL---NRI----AEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 186 ~n-LG~~L~~l---Gr~----dEAi~-l~kAL~l~P~n~~a 217 (479)
++ .+.++..+ |++ ++++. +.++|.++|+|..+
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence 98 99998876 333 46777 66999999999764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.8e-12 Score=130.25 Aligned_cols=190 Identities=20% Similarity=0.195 Sum_probs=162.4
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
++-.|.--+...--||-++..++...|+..|++|++++|.+-.|++.||..|.-.+...=|+=+|++++.+-|+|+..+
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw- 435 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW- 435 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH-
Confidence 4556655556556678889999999999999999999999999999999999999999999999999999999987544
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
.+||.+|.++++.++||.+|.+|+....- ...+|..||.+|.+++++.+|..+
T Consensus 436 -~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------------e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 436 -VALGECYEKLNRLEEAIKCYKRAILLGDT--------------------------EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------------chHHHHHHHHHHHHHHhHHHHHHH
Confidence 56889999999999999999999987221 224899999999999999999999
Q ss_pred HHHHHH-------cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhh
Q 011721 172 YMKALS-------LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 172 yrKALe-------LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~ 240 (479)
|++-++ ++|....+.. |+..+.+.+++++|-. +.+.+.-++ ..++|..++.++++...
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~-----------e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET-----------ECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHhcC
Confidence 999999 5566667776 9999999999999999 666665533 34788888998887754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=118.90 Aligned_cols=166 Identities=11% Similarity=-0.009 Sum_probs=131.1
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+....+++.+|..+...|++++|+..|++++..+|+++.. ...+.++.+|...|++++|+..|+++++.+|...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----- 104 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP----- 104 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----
Confidence 4456789999999999999999999999999999987532 1234567899999999999999999999977532
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHH--------------
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQ--------NDYESAERYYMKALSLESDKNKQC-------------- 186 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l--------GdydeA~~~yrKALeLdPdna~a~-------------- 186 (479)
....+++.+|.++... |++++|+..|++++..+|++....
T Consensus 105 ------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 105 ------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred ------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 1224788999999887 899999999999999999986331
Q ss_pred ----HHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---------HHHHHHHHHHHHHHHHHhh
Q 011721 187 ----NLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---------SYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 187 ----nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---------~~~k~~~rA~eaL~el~~a 238 (479)
.+|.+|..+|++.+|+. +.+++...|+++.... ..++.+++|...+..+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999 9999999887643211 1124455566655555443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=126.94 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=168.9
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.+.+-.+.+.+..+++..|+.+-.|+|..+|++..+|...|.++.+.||.++|+-.|+.+..+.|-+... +.+|..+|
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hsY 378 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHHH
Confidence 3555556677789999999999999999999999999999999999999999999999999999976543 45677999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHH---hc--------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVI---AC--------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~l---a~--------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
...|++.||...-+.+++..|... .+ ++...++|.....+. +.++|....+...++.++...|.++++
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHHHHHHHhhCccchH
Confidence 999999999999999999877532 11 122222333322222 678898889999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 169 ERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
+..++++|...||..-...||.++...+.+.+|.. |..||.++|++ +++.+=|..+++.-
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~-----------~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS-----------KRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc-----------hHHHHHHHHHHhcc
Confidence 99999999999998876669999999999999999 99999999987 34555555566543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-12 Score=109.71 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=70.1
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 41 LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 41 ~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
.|.+++..+|++..++..+|..+...|++++|+..|++++..+|.++.
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------------------------------- 52 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR-------------------------------- 52 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------------------------
Confidence 566677777776666777777777777777777777766666665432
Q ss_pred hHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 121 EVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 121 ~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
++.++|.+|..+|++++|+.+|++++.++|+++..+. +|.+|...|+++
T Consensus 53 ------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 53 ------------------------------YWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 4455555566666666666666666666666555444 566666666666
Q ss_pred HHHH-HHHHHHhcCCC
Q 011721 200 EAKS-LLQAVRASSRN 214 (479)
Q Consensus 200 EAi~-l~kAL~l~P~n 214 (479)
+|+. +.+++.++|++
T Consensus 103 ~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 103 SALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHhcccc
Confidence 6666 55555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-12 Score=121.02 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+...||.-|.++|++..|.+-++++++.+|++..+++ +++.+|..+|..+.|.+.|++|+.+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~--~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------------ 101 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHL--VRAHYYQKLGENDLADESYRKALSLAPN------------ 101 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH--HHHHHHHHcCChhhHHHHHHHHHhcCCC------------
Confidence 56788999999999999999999999999999876654 4568999999999999999999998655
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+.++++|.|+.++.+|+|++|...|++|++ +|.. ++.+. +|.|-+++|+++.|.. +.++|
T Consensus 102 --------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 102 --------------NGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred --------------ccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 345999999999999999999999999997 4444 45664 9999999999999999 99999
Q ss_pred HhcCCCccchH----HH--HHHHHHHHHHHHHHHhhh
Q 011721 209 RASSRNEKMDE----SY--AKSFEHASLMLTELESQS 239 (479)
Q Consensus 209 ~l~P~n~~a~~----~~--~k~~~rA~eaL~el~~a~ 239 (479)
.++|+++.... .+ ...+..|...+..+....
T Consensus 167 ~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 167 ELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 99999876422 22 234556666666665544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-11 Score=125.06 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
...|+++..+..+|.+++..|++++|.++|++++++.|++.....|+.++.++|+.++|.. +.+++.+
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456666677777777777777777777777777777776554457777777777777777 6666554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=138.09 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=127.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..+.+....|+++.|+..|.++++.+|+...+...++.++...|++++|+.++++++ +|.+.......+++.+|..+|
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC
Confidence 344578889999999999999999999986566699999999999999999999999 665544444455678999999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
++++|++.|+++++.+|.. +.++..|+.+|...+++++|++.+++++.++|++.
T Consensus 117 dyd~Aiely~kaL~~dP~n--------------------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~ 170 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTN--------------------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ 170 (822)
T ss_pred CHHHHHHHHHHHHhhCCCC--------------------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence 9999999999999986653 34666667777777777777777777777777754
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 184 KQCNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 184 ~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
....++.++..+++..+|+. +.+++..+|++..
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 44225555555666666777 7777777777654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-11 Score=121.81 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=150.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHhcC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK-DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRS--EEAIEAIKSFRCLCA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g-d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gry--dEAie~lekal~l~P 84 (479)
..+++...|.....+...+.+....+ ++++|+.++.+++..+|++..+++..+.++...|+. ++++..+.+++..+|
T Consensus 60 t~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 60 TADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 34677788887666666665655555 689999999999999999999999999999999874 788999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-- 162 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-- 162 (479)
++..++.+. +.++...|++++|++++.++|+++|. +..+|+++|.++..+
T Consensus 140 kNy~AW~~R--~w~l~~l~~~~eeL~~~~~~I~~d~~--------------------------N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 140 KNYHAWSHR--QWVLRTLGGWEDELEYCHQLLEEDVR--------------------------NNSAWNQRYFVITRSPL 191 (320)
T ss_pred ccHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCC--------------------------chhHHHHHHHHHHhccc
Confidence 998776554 46788899999999999999998654 334899999988876
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCCccc
Q 011721 163 -NDY----ESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 163 -Gdy----deA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
|.+ ++++.+..++|.++|+|..+++ ++.+|.. +++..+|+. +.+++..+|++..+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 333 5788888999999999999988 9988888 566788999 88888888877654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=136.59 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=135.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
++.+.+.+-|.....+..++.+....|.+++|+.++..+++..|++..|+.+++.+|.+++++++|+..+++++..+|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 34556777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
+...+ .++.++.++|++++|+++|++++... |+++.++.++|.++...|+.+
T Consensus 154 ~~~~~--~~a~~l~~~g~~~~A~~~y~~~~~~~--------------------------p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 154 AREIL--LEAKSWDEIGQSEQADACFERLSRQH--------------------------PEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHH--HHHHHHHHhcchHHHHHHHHHHHhcC--------------------------CCcHHHHHHHHHHHHHcCCHH
Confidence 87654 45688999999999999999999853 445569999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHH
Q 011721 167 SAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~ 186 (479)
+|...|++|+++..+-...|
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHHHhhCcchHHH
Confidence 99999999999977666554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=131.95 Aligned_cols=236 Identities=18% Similarity=0.160 Sum_probs=131.2
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
+++.|.|..+.+-...+.+..+||-.|+.+|++|+..+|.. ++....+|.++.++|+.+.|+..|+++++++|.+..+.
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 44455544444433334455555555555555555544432 12234455555555555555555555555555444333
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhH-H-HhhhhhHHHHHHHHHHH
Q 011721 91 LDNVLLE-LYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKT-Q-ITLVQELSRISGNLAWA 158 (479)
Q Consensus 91 l~~aLg~-lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~-~-l~L~pe~~~al~nLG~a 158 (479)
+.++... .+.....+..|...+.+|..+++..... .-+.+..+.....-. . ..-.+..++.++.+|..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3222111 1112233444555555555554332100 001111111100000 0 11123344678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----HHH---HHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----SYA---KSFEHA 228 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~~~---k~~~rA 228 (479)
|..+|+|++|..+|.+++..+|++ .-.+. ||.+|+..|++++|+. +++.+...|++...-. .+. +.-.+.
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 999999999999999999999999 44555 9999999999999999 8888999999866311 111 111233
Q ss_pred HHHHHHHHhhhhcCCCChh
Q 011721 229 SLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~ 247 (479)
..+...+.+.++..|.|..
T Consensus 397 d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred HHHHHHHHHHHhcccccHH
Confidence 4555555556666677664
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.7e-11 Score=119.36 Aligned_cols=211 Identities=17% Similarity=0.106 Sum_probs=140.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
.+.++...+..+++..|+..|-.|+..+|++..+++..|.+|...|+-.-|+.-+.+++.+-|+...+.+. -|.++.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ--Rg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ--RGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH--hchhhhh
Confidence 34556677889999999999999999999999999999999999999999999999999999997655544 3578999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|.+++|+..|+.+|...|..........+.+. -.+. ..+.....-+...|++..|+++..+.|++.|=
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~----------~~e~-~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL----------IQEH-WVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh----------HHHH-HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 999999999999999987742210000000110 0000 12222233344556666666666666666665
Q ss_pred CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 182 KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
++..+. .+.||...|+...||. +..+-.+..+|..... ...-..+.+...|.+++..++++|+.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 555554 5666666666666666 5555555555544321 12233455555666666666666653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=134.10 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=147.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
.++-...-..|+.+...+..+++..++|++++|+..|+++++.+|+++.... .++.++...|+.++|+.++++++ .
T Consensus 21 ~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~--~ 96 (822)
T PRK14574 21 ALFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQ--S 96 (822)
T ss_pred HHHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhc--c
Confidence 3443444578888899999999999999999999999999999999853322 34567888999999999999999 3
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
|... ....+..+|.+|..+|+|++|++.|+++++++|+++.++. |+.+|...++.
T Consensus 97 p~n~------------------------~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 97 SMNI------------------------SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred CCCC------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 2211 1124455688999999999999999999999999998887 99999999999
Q ss_pred HHHHH-HHHHHHhcCCCccch-HHHH-HHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhhhhh
Q 011721 199 AEAKS-LLQAVRASSRNEKMD-ESYA-KSFEHASLMLTELESQSMLQPTDYGEDKRKKILSSCT 259 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~-~~~~-k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~~~~ 259 (479)
++|+. +.+++..+|.+.... ..++ ....+..++++.+++.+..+|++.. ....++..++
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e--~~~~~~~~l~ 214 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE--VLKNHLEILQ 214 (822)
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH
Confidence 99999 888999999865421 1111 1235666688888899999998776 3344444333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=114.81 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
...|...+-+....+|++.++ .+++..+...|+-+.+..+..++...+|.+.... .+++....+.|++.+|+..|++
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll--~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELL--AAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHH--HHHHHHHHHhcchHHHHHHHHH
Confidence 334555555666677777777 7788888888888888888888777777765432 3356677788888888888888
Q ss_pred HHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 115 ALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
+..+. |.+.++++.+|.+|.+.|++++|...|.+|+++.|+++..++ ||+.|+
T Consensus 126 A~~l~--------------------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 126 AARLA--------------------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred HhccC--------------------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 87763 445567888888888888888888888888888888887776 888888
Q ss_pred HcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 194 RLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 194 ~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
-.|+++.|.. ++.+...-+.+..
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchH
Confidence 8888888888 5555555554443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=115.15 Aligned_cols=174 Identities=15% Similarity=-0.020 Sum_probs=126.0
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
|.-..+|+..+.++...++++.|...+.++....+. ........|.++...|++++|++.+++++..+|++......
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 444556777777777778888888888887775543 34456667888889999999999999999999887643221
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+..+...|++..+.....+++... ....|....++..+|.++..+|++++|+..+
T Consensus 83 ---~~~~~~~~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 137 (355)
T cd05804 83 ---HLGAFGLGDFSGMRDHVARVLPLW----------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEAA 137 (355)
T ss_pred ---hHHHHHhcccccCchhHHHHHhcc----------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223444444444444444444320 0112344457788899999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+++++++|+++..+. ||.+|...|++++|+. +.+++...|.+
T Consensus 138 ~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 138 RRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 999999999987776 9999999999999999 88888887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=121.69 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=180.2
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++...|-+...+.-....+...|+..+-..+--+.+...|+.+-.++.+|.-|.-.|++.+|..+|-++..++|..+.+
T Consensus 269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa 348 (611)
T KOG1173|consen 269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA 348 (611)
T ss_pred HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH
Confidence 34556666654444333344556666666666667777899999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH--------hcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI--------ACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~l--------a~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
++. +|..|.-.|..++|+.+|..|-++.|... .+.. ...+.|.. +....+.|.|.++-++..+|.+.+
T Consensus 349 Wl~--fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~-Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 349 WLA--FGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK-FFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHH--HhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH-HHHHHHhcCCCcchhhhhhhheee
Confidence 765 46789999999999999999999976521 1110 11122221 112226889999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC----CH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--HHH-HHHHHH
Q 011721 161 QQNDYESAERYYMKALSLESD----KN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--SYA-KSFEHA 228 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPd----na---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~~~-k~~~rA 228 (479)
..+.|.+|+.+|+++++.-++ .. ..++ ||.++.+++++++|+. +.++|.+.|.+....- .+. .-++..
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 999999999999999954333 22 2244 9999999999999999 9999999999977422 111 223455
Q ss_pred HHHHHHHHhhhhcCCCChhhHHHHHhhhhhh
Q 011721 229 SLMLTELESQSMLQPTDYGEDKRKKILSSCT 259 (479)
Q Consensus 229 ~eaL~el~~a~~~~P~~~~~~~~~~~~~~~~ 259 (479)
..++..+.+++.++|++. ++..++..+.
T Consensus 506 d~Aid~fhKaL~l~p~n~---~~~~lL~~ai 533 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDNI---FISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHhcCCccH---HHHHHHHHHH
Confidence 666778888999999854 4555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=115.14 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=165.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
+.+..+..|.....++.++.+....|+++.|..+|.++.+..|+.. .+....+.++...|++++|+..++.+++..|++
T Consensus 107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3444545555445566777888889999999999999999877764 355557999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---hhHHh-c----CCCchHHHHh-hch-h--HHHhhhh----hHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKT---EEVIA-C----GGKSTKIARS-QGR-K--TQITLVQ----ELSR 150 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~---p~~la-~----~~k~~~~A~~-~g~-k--~~l~L~p----e~~~ 150 (479)
+... ..++.+|...|++++|++.+.+.++.. +.... . .......+.. .+. . ......| +++.
T Consensus 187 ~~~l--~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~ 264 (409)
T TIGR00540 187 KEVL--KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIA 264 (409)
T ss_pred HHHH--HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHH
Confidence 8643 456789999999999999999999762 21110 0 0000000000 000 0 0012233 4678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc--cchHHH---
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC--N-LAICLIRLNRIAEAKS-LLQAVRASSRNE--KMDESY--- 221 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~--~a~~~~--- 221 (479)
++..+|..+...|++++|+..++++++..|++.... . .....+..++.++++. +.++++..|+++ ...+..
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 999999999999999999999999999999998532 2 4555566788999999 889999999998 543321
Q ss_pred ---HHHHHHHHHHHHHHHhhhhcCCC
Q 011721 222 ---AKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 222 ---~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.+.+++|.+.++.. .++...|+
T Consensus 345 ~~~~~~~~~A~~~le~a-~a~~~~p~ 369 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNV-AACKEQLD 369 (409)
T ss_pred HHHcccHHHHHHHHHHh-HHhhcCCC
Confidence 23455555544421 34445675
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=106.08 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFE 226 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~ 226 (479)
.+.|++||.++..+|+|++|+.+|.+|+.++|+++..+. +|.||+..|+.++|+. +..++...-.++. +..--+
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~----~~~l~~ 144 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE----HQILRQ 144 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh----HHHHHH
Confidence 348899999999999999999999999999999997765 9999999999999999 8888887743322 222335
Q ss_pred HHHHHHHHHH
Q 011721 227 HASLMLTELE 236 (479)
Q Consensus 227 rA~eaL~el~ 236 (479)
+|..+|..+.
T Consensus 145 ~A~~~L~~l~ 154 (157)
T PRK15363 145 RAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHhh
Confidence 7777777654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=123.07 Aligned_cols=176 Identities=21% Similarity=0.233 Sum_probs=138.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC--- 83 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~--- 83 (479)
.|+...++.+...++...|++++|..++.+|+.+ .+.....+.+++.++...+++++|+.+|++++++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4444556667778899999999999999999973 34456778899999999999999999999987763
Q ss_pred --CCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 84 --ADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 84 --P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
+++ ..+.+..-|+.+|..+|++++|.++|++||.+......- . .+.....+++||..|.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~----------------~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--K----------------DYGVGKPLNQLAEAYE 420 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--c----------------ChhhhHHHHHHHHHHH
Confidence 233 223444557899999999999999999999986543320 0 1112247899999999
Q ss_pred HcCCHHHHHHHHHHHHHc----CCCCH---HHH-HHHHHHHHcCCHHHHHHHHHHH
Q 011721 161 QQNDYESAERYYMKALSL----ESDKN---KQC-NLAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeL----dPdna---~a~-nLG~~L~~lGr~dEAi~l~kAL 208 (479)
+.++|.+|...|..++.| .|+++ ..| |||.+|..+|++++|+.+...+
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999987 46654 334 4999999999999999955443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-10 Score=113.09 Aligned_cols=174 Identities=12% Similarity=0.047 Sum_probs=126.4
Q ss_pred HhhCCCCCcHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hcCCCh
Q 011721 12 IHKVPAGDSPYVR---AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-LCADDS 87 (479)
Q Consensus 12 v~k~p~~~~pyv~---a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-l~P~da 87 (479)
....|.+.++... .+.+....|++++|+.++++++...|++..++.. +..+...|++..+...+.+++. ..|.++
T Consensus 33 ~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 111 (355)
T cd05804 33 AQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP 111 (355)
T ss_pred HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC
Confidence 4445544443222 2345678899999999999999999998877765 5555555444444443333332 223332
Q ss_pred HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 QE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 ~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.. .....++.++..+|++++|+..+++++++.|.. ..++..+|.+|...|+++
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------------------------AWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------------------------cHHHHHHHHHHHHcCCHH
Confidence 22 222345678999999999999999999986553 348899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHH----HH-HHHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 167 SAERYYMKALSLESDKNK----QC-NLAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~----a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+|+.+|++++.+.|.++. .+ ++|.++..+|++++|+. +.+++...|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999885432 23 39999999999999999 777776665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=121.10 Aligned_cols=227 Identities=17% Similarity=0.161 Sum_probs=172.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+-.||+++|-+..||..++.++-..||.+++..+...|-.++|++.+-|..++....++|.+++|+-+|.+++..+|.+.
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW 241 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch
Confidence 45679999999999999999999999999999999888899999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH-------H----h--c--CCCc-----------------------
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV-------I----A--C--GGKS----------------------- 129 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~-------l----a--~--~~k~----------------------- 129 (479)
...+.. ..+|.+.|++..|...|.+++.+.|.. . . + ....
T Consensus 242 ~~~~er--s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ 319 (895)
T KOG2076|consen 242 ELIYER--SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL 319 (895)
T ss_pred HHHHHH--HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH
Confidence 544433 478999999999999999999887710 0 0 0 0000
Q ss_pred ------------hHHHHh-----hc---------------------------h------hH-H-----------------
Q 011721 130 ------------TKIARS-----QG---------------------------R------KT-Q----------------- 141 (479)
Q Consensus 130 ------------~~~A~~-----~g---------------------------~------k~-~----------------- 141 (479)
...+.. .. . .. .
T Consensus 320 ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l 399 (895)
T KOG2076|consen 320 NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL 399 (895)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH
Confidence 000000 00 0 00 0
Q ss_pred H-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 142 I-------TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 142 l-------~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+ ..-.+..+.++.++.+|...|+|.+|+.+|-.++...+.+. ..|. +|.||+.+|.+++|+. +.++|.++
T Consensus 400 l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 400 LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 0 00112347889999999999999999999999999998876 3444 9999999999999999 99999999
Q ss_pred CCCccc--hHH-H---HHHHHHHHHHHHHHH
Q 011721 212 SRNEKM--DES-Y---AKSFEHASLMLTELE 236 (479)
Q Consensus 212 P~n~~a--~~~-~---~k~~~rA~eaL~el~ 236 (479)
|++..+ ..+ . ....++|.++|..+.
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 998664 111 1 234566666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=116.50 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=62.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
=..+.++|.+|+..|.+||++.|. ++-+|.|.+.+|.++|.|+.|++..++||.
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~--------------------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~ 143 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT--------------------------NAVYYCNRAAAYSKLGEYEDAVKDCESALS 143 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC--------------------------cchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 344556666666666666665333 223556666666666666666666666666
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~ 236 (479)
+||.+..+|- ||.+|..+|++++|+. |.+||.++|+|.. +...++.|+..+.+-.
T Consensus 144 iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~----~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 144 IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES----YKSNLKIAEQKLNEPK 200 (304)
T ss_pred cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH----HHHHHHHHHHHhcCCC
Confidence 6666666665 6666666666666666 5666666666542 2333444444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-10 Score=114.03 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=157.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+..++.-|-+.+|.+.++.+++..|. ++.+..|+.+|.+.++...|+..|.+.+...|.+.. +....+.+|..+|+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT--~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT--YLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh--hhhhhHHHHHHHHh
Confidence 345678889999999999999998775 567889999999999999999999999999999764 34456789999999
Q ss_pred HHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 105 IEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+++|.++|+.++++.|..+. +.+.+.+.|+..++.. +.++-..++.+.|+|.+++-.++||-++..|++|
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999999999886531 2335566666555554 5777778889999999999999999999999999
Q ss_pred HHcCC--CCH-HH-HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 176 LSLES--DKN-KQ-CNLAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 176 LeLdP--dna-~a-~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+...- +.+ +. ||||.+....|++.-|.. +.-+|..++++..+
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 99854 443 44 459999999999999999 77789999988765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=118.41 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=158.0
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.+-|. +..|..+..++..-.++..|+..|...+...|.+...+..+|.++...+++++|.++|+.+++.+|.+.++.
T Consensus 249 sL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEai 327 (478)
T KOG1129|consen 249 SLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAI 327 (478)
T ss_pred HhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceee
Confidence 3444444 456777778899999999999999999999999998899999999999999999999999999999987643
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---chhHH------hcCCCchHHHHhhchhHHH-hh-hhhHHHHHHHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKK---TEEVI------ACGGKSTKIARSQGRKTQI-TL-VQELSRISGNLAWAY 159 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl---~p~~l------a~~~k~~~~A~~~g~k~~l-~L-~pe~~~al~nLG~ay 159 (479)
. +++.-|.--|+.+-|+.+|++.|.+ .|+.. .+.....+.++..+..+.- .- ....+++|+|||.+.
T Consensus 328 A--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 328 A--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred e--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 2 2334577789999999999999987 23211 1122233333322222211 11 234468999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
...|++.-|..+|+-||.-||++..++| ||.+-+..|+.++|.. +..|-...|+-.
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 9999999999999999999999999998 9999999999999999 556677888643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=108.00 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=143.7
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
..+-+.|...+. +.....+...|+-+.+..+..++....+.+...+..+|..+...|+|.+|+..++++..+.|+|...
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 345567766666 6666677778888888888888777888888888889999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
+ +.+|.+|.+.|++++|...|.+|+++.+. .+.+++|||+.|+-.|+++.|+
T Consensus 137 ~--~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------------------------~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 137 W--NLLGAALDQLGRFDEARRAYRQALELAPN--------------------------EPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred h--hHHHHHHHHccChhHHHHHHHHHHHhccC--------------------------CchhhhhHHHHHHHcCCHHHHH
Confidence 4 56788999999999999999999998543 4459999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHH
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSL 204 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l 204 (479)
.++..+....+.+..... |+.+...+|++++|..+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999998886655 99999999999999983
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=116.86 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=76.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+...|..+...|+|++|+.+|++++.++|+++..++ .++.+|..+|++++|+..+++|+.++|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~--~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------- 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYA--DRAQANIKLGNFTEAVADANKAIELDPS-------------- 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------
Confidence 344556666666666666666666666666654332 2345566666666666666666665332
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL 195 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l 195 (479)
++.+++++|.+|+.+|+|++|+.+|+++++++|+++.+.. ++.|...+
T Consensus 69 ------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 2347788899999999999999999999999999987776 77765544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-09 Score=111.61 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=154.1
Q ss_pred HHHHHhhCCCC-CcHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 8 LFHVIHKVPAG-DSPYV---RAKRAQLVEKDPSRAISLFWAAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 8 ~~~~v~k~p~~-~~pyv---~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al-~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.++++.+.|.. +.|.+ .+..+....|+++.|..+|.+|.+.+|+...+. ...+.++...|++++|+..++++++.
T Consensus 103 A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 103 VEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34666666654 22333 345566789999999999999999888875443 34489999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH---Hh-cCCCc----hHHHHhh-chh-H-H----H-hhhh
Q 011721 83 CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV---IA-CGGKS----TKIARSQ-GRK-T-Q----I-TLVQ 146 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~---la-~~~k~----~~~A~~~-g~k-~-~----l-~L~p 146 (479)
+|+++... ..++.+|...|++++|++.+.+..+..... .. +.... ...+... ... . . + .-.|
T Consensus 183 ~P~~~~al--~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 183 APRHPEVL--RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 99997653 346789999999999998888888753211 00 00000 0000000 000 0 0 0 1235
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----H
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE----S 220 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~----~ 220 (479)
+++.++..+|..+...|+.++|+..++++++..| ++.... ++.+ ..+++++++. +.+.++..|+|+.... .
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 5678889999999999999999999999999555 443322 4443 4489999999 7778889998876321 1
Q ss_pred --HHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 221 --YAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 221 --~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
..+.+++|.+.++ +.+...|++
T Consensus 338 ~~~~~~~~~A~~~le---~al~~~P~~ 361 (398)
T PRK10747 338 LMKHGEWQEASLAFR---AALKQRPDA 361 (398)
T ss_pred HHHCCCHHHHHHHHH---HHHhcCCCH
Confidence 1234555555554 455557763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=118.61 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=139.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+.+..||+++|..+|+.|+.-+.....|++++|..+..+|++++|+++|-++-.+--++++..+. ++.+|..+.+..
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~q--ianiye~led~a 575 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQ--IANIYELLEDPA 575 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHhhCHH
Confidence 344567899999999999999888888999999999999999999999998877766666655443 568999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCc---------hHHHHh-hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKS---------TKIARS-QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~---------~~~A~~-~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+||+.|-++..+-|.......+. ...|.. |+.. ...-|-+.+..-.||..|....-.++|+.+|++|-
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999988866543211100 001111 1110 11234455677788888888888888999999988
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
-+.|+...... ++.|+...|+|..|.. +...-...|.+..
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 88888887665 8888888899999988 6666677787654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=117.32 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLL-----ELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg-----~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+.+.+-|.-+.+.++|.+|+..|.+|++++|.++ .. .+|.++|.++.|++..+.||.++|.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------- 147 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------- 147 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-------
Confidence 4466788889999999999999999999999975 34 4577899999999999999998654
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIA 199 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~d 199 (479)
...+|..||.+|+.+|+|++|++.|+|||+|+|++..... |..+-..++...
T Consensus 148 -------------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 148 -------------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred -------------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 4459999999999999999999999999999999997665 777666665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=119.28 Aligned_cols=245 Identities=16% Similarity=0.079 Sum_probs=176.2
Q ss_pred HHHHHhhCCCCCcH--HHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 8 LFHVIHKVPAGDSP--YVRAKRAQLVEKD--PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 8 ~~~~v~k~p~~~~p--yv~a~~~~L~~gd--~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
+|....++-....+ +++++ .++..++ .+.|...|.-.++..|++.-+++.-|.+....|+|-.|+.+|+.++.++
T Consensus 116 ~~~~A~ki~m~~~~~l~~~~~-~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~in 194 (1018)
T KOG2002|consen 116 LFDLADKIDMYEDSHLLVQRG-FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRIN 194 (1018)
T ss_pred HhhHHHHhhccCcchhhhhhh-hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcC
Confidence 34444444433322 33343 3444444 5999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc-CC-----------CchHHHHhhchhHHHhhhhhHHHH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC-GG-----------KSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~-~~-----------k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
|.-.. -...+.|-++.++|+.+.|+..|.+|+.++|..... .+ .....+..++..+ ..+++++|.+
T Consensus 195 p~~~a-D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~a-y~~n~~nP~~ 272 (1018)
T KOG2002|consen 195 PACKA-DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRA-YKENNENPVA 272 (1018)
T ss_pred cccCC-CccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhhcCCCcHH
Confidence 86421 122345578899999999999999999999974311 00 1111222222211 4678899999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc-c--hH--HH
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK-M--DE--SY 221 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~-a--~~--~~ 221 (479)
++.|+.-|+..|+|..+...+..|+...-..+ ..+. +|.+|..+|+|++|.. |.+++..+|++.. . +. .+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 99999999999999999999999999875544 3355 9999999999999999 9999999999822 2 11 22
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChhhHHHHHhhh
Q 011721 222 AKSFEHASLMLTELESQSMLQPTDYGEDKRKKILS 256 (479)
Q Consensus 222 ~k~~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~~ 256 (479)
++. ....+....|++-+...|..++.+.+...+.
T Consensus 353 i~~-~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 353 IKR-GDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHh-chHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 222 3444555555556666787777666664433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-09 Score=96.27 Aligned_cols=117 Identities=17% Similarity=0.046 Sum_probs=96.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+..++...|.....+...+..++..+++++|+..|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45567777777666666777788899999999999999999999999999999999999999999999999988888775
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
+. .++++|.+|...|+++
T Consensus 85 ~~--------------------------------------------------------------~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 85 PR--------------------------------------------------------------PYFHAAECLLALGEPE 102 (135)
T ss_pred hH--------------------------------------------------------------HHHHHHHHHHHcCCHH
Confidence 32 5566777777788888
Q ss_pred HHHHHHHHHHHcCCCCHHH
Q 011721 167 SAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a 185 (479)
+|+..|+++++++|++...
T Consensus 103 ~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 103 SALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHhccccchH
Confidence 8888888888888777643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.5e-10 Score=115.47 Aligned_cols=165 Identities=16% Similarity=0.078 Sum_probs=140.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH----------HH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV----------LL 96 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a----------Lg 96 (479)
.+....+++++|...--..+++++.+..+++.-|.++...++.+.|+..|++++.++|++........ -|
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 34567799999999998899999999999999999999999999999999999999998643211110 13
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+-..+.|++.+|.+.|..||.++|.... .++..|.|+|.+...+|+..+|+.....|+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~----------------------~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKK----------------------TNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccc----------------------hhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 5667899999999999999999887432 133488999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+|+|....++. -|.|++.++++++|.+ +.+++++..+
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999998 9999999999999999 9999887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8e-09 Score=109.32 Aligned_cols=152 Identities=20% Similarity=0.154 Sum_probs=129.8
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|....+.+..+..+...|.+++|+..+..+++..|+|+. +....++++...|+..+|++.|++++.++|...
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~--~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----- 374 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY--YLELAGDILLEANKAKEAIERLKKALALDPNSP----- 374 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----
Confidence 3677789999999999999999999999999999999874 445567999999999999999999999977642
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
....++|.+|++.|++.+|+..+...+.-+|+++..|. ||.+|..+|+..+|.. .-+
T Consensus 375 ---------------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 375 ---------------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred ---------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 37799999999999999999999999999999999998 9999999999999999 777
Q ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 207 AVRASSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 207 AL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
.+.+.-+ ++.|.+.+....+..
T Consensus 434 ~~~~~G~-----------~~~A~~~l~~A~~~~ 455 (484)
T COG4783 434 GYALAGR-----------LEQAIIFLMRASQQV 455 (484)
T ss_pred HHHhCCC-----------HHHHHHHHHHHHHhc
Confidence 7766542 345555555555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-08 Score=103.93 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=160.1
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-----~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.|-+++.-.|+.....+.+|.++-..|..|+||..-...+.. |+. .-|+..||.=|...|-+|.|+..|..+.
T Consensus 56 dlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~ 134 (389)
T COG2956 56 DLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLV 134 (389)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 4567888888988899999999999999999999887665553 332 3578899999999999999999998876
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC--------------CCchHHHHhhchhHHHhhhh
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG--------------GKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~--------------~k~~~~A~~~g~k~~l~L~p 146 (479)
.. |..+...+. -|..+|....++++||+.-++..++.++...+. ....+.|+....++ +..+|
T Consensus 135 de-~efa~~Alq-qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~ 211 (389)
T COG2956 135 DE-GEFAEGALQ-QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADK 211 (389)
T ss_pred cc-hhhhHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCc
Confidence 53 333333333 255899999999999999999998876532110 01122233222222 56677
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
...++-..||.+++..|+|+.|++.++.+++.||+.. .... |-.||..+|+.++.+. +.++.+..++.
T Consensus 212 ~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 7888889999999999999999999999999999987 5666 9999999999999999 77788887764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=114.08 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=122.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+.++...++++.|+.+|.+++...-+ ..++......++++...+....++|.-+...- .-|+.+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r--~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEER--EKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHH--HHHHHHHhccC
Confidence 344455556777777777776653221 44555666666677666666666666433221 23577889999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
|.+|+.+|.+||+. +|+++.+|.|+|.+|..+|.+..|+...+++++++|++..
T Consensus 374 y~~Av~~YteAIkr--------------------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKR--------------------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred HHHHHHHHHHHHhc--------------------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 99999999998887 4556679999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 185 QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 185 a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+|. -|.++..+.+|++|+. |.+++.++|++..+
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 998 9999999999999999 99999999988663
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=90.91 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
++++.+|..+...|++++|++.|.+++..+|++.. ....+.++.+|...|++++|+.+|++++..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------- 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP--------- 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---------
Confidence 46778888888888888888888888888877531 11223355667777777777777777776654421
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
..+.+++++|.+|..+|++++|+.+|+++++..|++..+
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 74 --------------KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred --------------cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 112366777777777777777777777777777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.5e-10 Score=88.80 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC-CHHHHHH-HHHHHHhcC
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN-RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG-r~dEAi~-l~kAL~l~P 212 (479)
++.+|.++|.++..+|+|++|+.+|.+|++++|+++.++. +|.+|..+| ++++|+. +.++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4568999999999999999999999999999999998887 999999999 7999999 999999998
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=112.39 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|..+...|+|++|+.+|++||+++|. +..+++++|.+|..+|+|++|+..+++|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~--------------------------~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN--------------------------NAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999998554 4458999999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++|+++.++. +|.+|..+|+|++|+. +.+++.++|++..
T Consensus 63 l~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 63 IELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999888 9999999999999999 9999999998865
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=106.69 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=163.3
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH-------------------------------
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVV------------------------------- 62 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v------------------------------- 62 (479)
..|-++.-.-..+.++...|++++|+.-|.++.-++|....+.-..|.+
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 3344444444556677888999999999999998888755444333333
Q ss_pred ---HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------Cch
Q 011721 63 ---MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KST 130 (479)
Q Consensus 63 ---L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~ 130 (479)
+....+|..|+-+-++++..+|++.++.+. -|.++...||.++|+-.|+.|+.+.|-.+..+. +..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alil--KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALIL--KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHh--ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 444455666666666777777777655432 357888999999999999999999875442211 122
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLA-WAYL-QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG-~ay~-~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
++|....+-. +..-|..+.++..+| .++. .----++|.++|+++|.++|+...+.+ +|.++...|++++++. +++
T Consensus 385 kEA~~~An~~-~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWT-IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 2222111110 344566667777776 4443 334558999999999999999999888 9999999999999999 888
Q ss_pred HHHhcCCCccch--HHHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 207 AVRASSRNEKMD--ESYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 207 AL~l~P~n~~a~--~~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+|...|+..... ...+......++++.++..+++++|.++.
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 999999865421 12344557778889999999999999876
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.1e-09 Score=98.58 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.++.++|.+|..+|++++|+.+|++++.+.|++...+. +|.+|..+|+...|.. +..++
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 37788999999999999999999999999999988776 9999999998777666 55554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=103.16 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=147.7
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--- 88 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--- 88 (479)
|.-.|.+-..+.+.+.+++..|.-.-|+.-+.++|.+.|++..|....|.++..+|.+++|+.-|..++..+|.+..
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 44444444455677789999999999999999999999999999999999999999999999999999999996521
Q ss_pred HHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 89 ESLDNVL----------LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 89 ~~l~~aL----------g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
+.-.+++ +..+.-.|++..||++....|++.|= ++..+-..+.+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W--------------------------da~l~~~Rakc 198 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW--------------------------DASLRQARAKC 198 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc--------------------------hhHHHHHHHHH
Confidence 1111111 13455678888888888888887543 33467778999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|...|+...|+..++.|-.+..|+...+. ++.+|...|+.+.++. +.+.|.++|++..
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 99999999999999999999999998877 9999999999999999 9999999998743
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=97.50 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deA 108 (479)
++++..+...+...++..+. ...+++.+|.++...|++++|+..|++++.+.|+... ......++.+|...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 44555666666554444443 3566789999999999999999999999998776432 22344578899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCCC
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE-------SAERYYMKALSLESD 181 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd-------eA~~~yrKALeLdPd 181 (479)
+.+|++++.+.|..... ...-..++.++|..+..+|+++ +|+.+|++++.++|+
T Consensus 92 ~~~~~~Al~~~~~~~~~-------------------~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 92 LEYYFQALERNPFLPQA-------------------LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhCcCcHHH-------------------HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999986553210 0001124444444444888876 666777778888887
Q ss_pred CH
Q 011721 182 KN 183 (479)
Q Consensus 182 na 183 (479)
+.
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 65
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.6e-09 Score=97.49 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=79.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
....+++.+|.++...|++++|+.+|++++.+.|+... ......++.+|...|++++|+.+|++++.+.|..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------- 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------
Confidence 44566889999999999999999999999988776432 2344557789999999999999999999885543
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHHcCCCC
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY--------------ESAERYYMKALSLESDK 182 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy--------------deA~~~yrKALeLdPdn 182 (479)
..++.++|.+|..+|+. ++|+.++++++.++|++
T Consensus 106 -------------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 -------------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -------------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34778888888888884 45555555555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=110.66 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=134.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
......|++++|+..+..+|+.+|.+..+|+.||.||.++|+.++|....-.|-.++|.+.+.+.. ++++..++|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~--ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR--LADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHhcccHH
Confidence 445677999999999999999999999999999999999999999999999999999999866544 568899999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--- 183 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--- 183 (479)
.|+-+|.+||..+|.. ...++....+|.++|++..|...|.+++.+.|...
T Consensus 225 qA~~cy~rAI~~~p~n--------------------------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN--------------------------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHHHHHHHHHhcCCcc--------------------------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999986553 34788999999999999999999999999999322
Q ss_pred ---HHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 184 ---KQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 184 ---~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.++..+..+...++-+.|++ +..++..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 12235777888888888999 7788873
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=97.38 Aligned_cols=112 Identities=11% Similarity=0.004 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
|..+...+...+...+.+......+.++.++..+|++++|+..|++++.+.+... ..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-----------------------~~ 71 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-----------------------DR 71 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----------------------hh
Confidence 4444445544444455444444455567889999999999999999999854311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH-------HcCCHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLI-------RLNRIAEAKS 203 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~-------~lGr~dEAi~ 203 (479)
+.++.++|.+|..+|++++|+.+|++|+.++|.+...++ +|.++. .+|++++|+.
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence 348999999999999999999999999999999998776 888888 6667664443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-08 Score=98.58 Aligned_cols=235 Identities=13% Similarity=0.097 Sum_probs=165.3
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++..+...+.| +.|++.-. .+...++++|+.+|...++.+|..-+++..||.++...|..|.||.+-+.++. .|+
T Consensus 26 q~~~~qa~~ls---r~Yv~GlN-fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spd 100 (389)
T COG2956 26 QDKQDQANRLS---RDYVKGLN-FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPD 100 (389)
T ss_pred hhHHHHHhhcc---HHHHhHHH-HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCC
Confidence 34444444444 57887754 66689999999999999999999999999999999999999999998876654 454
Q ss_pred ChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcCCCc--hHHHHhhchhHHHhhhh-----hH
Q 011721 86 DSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACGGKS--TKIARSQGRKTQITLVQ-----EL 148 (479)
Q Consensus 86 da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~~k~--~~~A~~~g~k~~l~L~p-----e~ 148 (479)
-.. ......||.=|+..|-+|.|...|......-.... .++... =.+|+...++. ..+.+ +.
T Consensus 101 lT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~~~~eI 179 (389)
T COG2956 101 LTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQTYRVEI 179 (389)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCccchhHH
Confidence 322 22223467789999999999999998877422111 110000 01222211111 12222 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc-hHH---HH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM-DES---YA 222 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a-~~~---~~ 222 (479)
+..|-.|+..++...+.+.|...+.||++-+|....+-. ||.+++..|+|+.|++ +...++.+|+.... .+. .-
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999997766 9999999999999999 88888888865331 111 12
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
..+++..+.+.-+.++....++.-
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccCCcc
Confidence 344566666666666666666533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=106.77 Aligned_cols=213 Identities=15% Similarity=0.066 Sum_probs=109.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH--CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQ--LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI 105 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~--~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~ 105 (479)
++..||++.|++.++-.-+.+.+.. .|-.+|..++.- -.++.+|..+-..++.++--++.+..+ -|++-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n--kgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN--KGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc--CCceeeecCcH
Confidence 4556666666655532222222222 223344333333 234555555555555444333332221 12333445555
Q ss_pred HHHHHHHHHHHHhchhHH-hc-C-C------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 106 EEEIELLKRKLKKTEEVI-AC-G-G------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 106 deAie~lekALkl~p~~l-a~-~-~------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
++|.+.|++||.-+.... ++ + + ...+.|+.++.+. ..+..++.++++.++.+|..+.+..+|++.|-++.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl-h~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL-HAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 555555555554432211 00 0 0 0111222222211 12234556677888888888888888888888888
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.+-|+++..+. ||.+|-+.|+..+|.+ +.......|-|....+ .+-....=-++.+..|+++.-..|.
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 88888887777 8888888888888887 6677777777654211 1111112234455556666666665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-09 Score=80.55 Aligned_cols=99 Identities=26% Similarity=0.322 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
+++.+|.++...|++++|+..|++++...|.+... ...++.+|...|++++|+..|++++.+.|..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDN------------ 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------------
Confidence 46778888888888888888888888888876533 3345677888888888888888888774432
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
..++..+|.++..+|++++|..++.+++.+.|+
T Consensus 68 --------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 --------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred --------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 247788899999999999999999999888874
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-08 Score=97.23 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=100.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|+.-..+-.+.++....|+.+-|..++.++....|+.... ...-+..+...|++++|+++|+..|.-+|......-+
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 33333334444555555555555555555555555554321 1112344555555555555555555554432211000
Q ss_pred chHHHHhhchhHH--------HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC---
Q 011721 129 STKIARSQGRKTQ--------ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN--- 196 (479)
Q Consensus 129 ~~~~A~~~g~k~~--------l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG--- 196 (479)
+-......|+... +..-+.+.++|..|+.+|...|+|++|.-||+..+=+.|.++..+. ||.++.-+|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 0000001111100 2333556689999999999999999999999999999999998887 999988876
Q ss_pred CHHHHHH-HHHHHHhcCCCcc
Q 011721 197 RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 197 r~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.-|.. |.+++.++|.+..
T Consensus 206 N~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHH
Confidence 6777888 8899999997654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-08 Score=109.42 Aligned_cols=132 Identities=16% Similarity=0.001 Sum_probs=86.0
Q ss_pred HHHHHHHHCCC---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcC
Q 011721 58 DMAVVMKQLDR---SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS--------KRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 58 ~LA~vL~~~Gr---ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl--------Gr~deAie~lekALkl~p~~la~~ 126 (479)
..|.-|...++ +..|+.+|+++++++|+++.++...++ +|... ++...+.....+++.+...
T Consensus 344 lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~--~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~----- 416 (517)
T PRK10153 344 YQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKAL--ADIVRHSQQPLDEKQLAALSTELDNIVALPEL----- 416 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHHHhcCCccHHHHHHHHHHHHHhhhcccC-----
Confidence 34444444433 667777777777777776554433222 22211 2345566666666554211
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-H
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-L 204 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l 204 (479)
+..+.++.-+|.++...|++++|..+|++|++++|+ ..+|. +|.++...|++++|+. +
T Consensus 417 -------------------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 417 -------------------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred -------------------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 112246677777788888888888888888888884 66676 8888888888888888 8
Q ss_pred HHHHHhcCCCcc
Q 011721 205 LQAVRASSRNEK 216 (479)
Q Consensus 205 ~kAL~l~P~n~~ 216 (479)
.+|+.++|.++.
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 888888887654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-07 Score=92.41 Aligned_cols=179 Identities=13% Similarity=0.019 Sum_probs=132.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH-HHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD---SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL-DNVLLELY 99 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~---~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l-~~aLg~lY 99 (479)
..+...+..|++++|+..|++++...|... .+.+.+|.++.+.+++++|+..|++++..+|+++.... ...+|.++
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 444567788999999999999999888755 44589999999999999999999999999999865322 22233333
Q ss_pred HHcC------------------CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 100 KRSK------------------RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 100 ~klG------------------r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
..++ ...+|+..|++.++.+|+..-. ..|... ...+...-++--+..|..|.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya-----~~A~~r----l~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT-----TDATKR----LVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-----HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3332 1357889999999998874310 011100 011122222334688999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 011721 162 QNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRAS 211 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~ 211 (479)
.|.|..|+.-++.+++--|+.+ +++. |+.+|..+|..++|....+.|..+
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~n 241 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAAN 241 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 9999999999999999999986 4566 999999999999999977766544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.6e-09 Score=106.95 Aligned_cols=215 Identities=20% Similarity=0.138 Sum_probs=148.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH----------------
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES---------------- 90 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~---------------- 90 (479)
..+...++|.+|+..|..||...|++...|.+.+..|...|+|++|.-..++.+.+.|......
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 4456777888888888888888888888888888888888888888888877777666532100
Q ss_pred ----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---cCC------
Q 011721 91 ----------------------------------LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---CGG------ 127 (479)
Q Consensus 91 ----------------------------------l~~aLg~lY~klGr~deAie~lekALkl~p~~la---~~~------ 127 (479)
.-..-+.++..+|++++|+..--..+++++.... +.+
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 0000125677788888888888888877664321 111
Q ss_pred CchHHHHhhchhHHHhhhhh------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HH-HHHH
Q 011721 128 KSTKIARSQGRKTQITLVQE------------LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK----QC-NLAI 190 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe------------~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~----a~-nLG~ 190 (479)
.....+..|+... +.++|+ .-..+-.-|+-..+.|+|..|.++|..||.++|++.. .| |+|.
T Consensus 217 ~~~~ka~~hf~qa-l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQA-LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhh-hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 1122333333222 333333 3467788899999999999999999999999999852 23 4999
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcC
Q 011721 191 CLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~ 242 (479)
+...+|+..+|+. +..|+.++|.-.++.. ..-..+++-.++++.++++....
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999 9999999998766422 11123455555555555555443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=78.85 Aligned_cols=92 Identities=28% Similarity=0.366 Sum_probs=81.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.+|...|++++|+..|+++++..|.. ..++..+|.+|...|++++|+.+|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDN--------------------------ADAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCcc--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999885542 24789999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
++.+.|.+...+. +|.++...|++++|.. +.+++...|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999987776 9999999999999999 878887776
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=104.87 Aligned_cols=238 Identities=16% Similarity=0.072 Sum_probs=161.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l-~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
-++.++.+.|+++....++..-+...++.+.|..+.+++++. +.....++..||.++..++++.+|+.+...++...|+
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 467889999998877666665567789999999999999998 4556788999999999999999999999999998887
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-------------------------------------------h-
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE-------------------------------------------E- 121 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p-------------------------------------------~- 121 (479)
|-..... -+.+-...|+.++|+......|.+.. .
T Consensus 546 N~~l~~~--~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 546 NHVLMDG--KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhchh--hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 4211000 01122224444444444433333211 0
Q ss_pred ----H--------------------------H-h--c-CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 122 ----V--------------------------I-A--C-GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 122 ----~--------------------------l-a--~-~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+ . + + .....+.+..+...+ -.+.|..+..|+..|.++...|+.++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA-SKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 0 0 0 0 001122222211111 24567778899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH---HHHHHHhcCCCccchH--H-HHHHHHHHHHHHHHHHhhhh
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS---LLQAVRASSRNEKMDE--S-YAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~---l~kAL~l~P~n~~a~~--~-~~k~~~rA~eaL~el~~a~~ 240 (479)
|.+.|.-|+.++|++..... ||.+|.+.|+..-|.. +..|++++|.|.++.. . -.+..++..++..-+..++.
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999888 9999999997655555 5679999999987633 1 12333444444455555555
Q ss_pred cCCCChh
Q 011721 241 LQPTDYG 247 (479)
Q Consensus 241 ~~P~~~~ 247 (479)
+.+.++-
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 5555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=84.71 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=85.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.++..+...|++++|+..|++++..+|... ....+++.+|.++...|++++|+.+|+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKST-----------------------YAPNAHYWLGEAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-----------------------ccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356788999999999999999998865421 123478999999999999999999999
Q ss_pred HHHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 174 KALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 174 KALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++...|++ +.++. +|.++..+|++++|+. +.+++...|++..
T Consensus 64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999986 34555 9999999999999999 8889999998754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-08 Score=111.54 Aligned_cols=165 Identities=17% Similarity=0.089 Sum_probs=108.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----------------
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS---------------- 87 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da---------------- 87 (479)
....++...+++++|+..+..++...|+...+|+.+|.++.+.+++++|... .++...+.+.
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence 3445566778888888888888888888888888888888888888888776 6666555543
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 -QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 -~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.-.....||.||.++|+.++|+..|+++|+++|.. +.+++++|..|... +.+
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--------------------------~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN--------------------------PEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc--------------------------HHHHHHHHHHHHHh-hHH
Confidence 00122345678888888888888888888875543 23445555555444 555
Q ss_pred HHHHHHHHHHH--------------------cCCCCHHH--------HH-HH------------HHHHHcCCHHHHHH-H
Q 011721 167 SAERYYMKALS--------------------LESDKNKQ--------CN-LA------------ICLIRLNRIAEAKS-L 204 (479)
Q Consensus 167 eA~~~yrKALe--------------------LdPdna~a--------~n-LG------------~~L~~lGr~dEAi~-l 204 (479)
+|+.++.+|+. .+|++.+. .. ++ .+|...++|++++. +
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 55555554444 45665432 01 23 56666777777777 6
Q ss_pred HHHHHhcCCCccc
Q 011721 205 LQAVRASSRNEKM 217 (479)
Q Consensus 205 ~kAL~l~P~n~~a 217 (479)
...|..+|.|.++
T Consensus 247 K~iL~~~~~n~~a 259 (906)
T PRK14720 247 KKILEHDNKNNKA 259 (906)
T ss_pred HHHHhcCCcchhh
Confidence 6677777777664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.1e-08 Score=86.46 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=76.1
Q ss_pred HCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHh
Q 011721 65 QLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQIT 143 (479)
Q Consensus 65 ~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~ 143 (479)
..++...+...++.++..+|+.+.. ...+.++.++...|++++|+..|+.++...+....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5677777777777777777776432 22334567777777777777777777765422110
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 144 LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 144 L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
...+.+.||.+++.+|+|++|+..++.+ .-.+-.+.... +|.+|..+|++++|+. |.+||
T Consensus 84 ----~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 ----KPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 0125677788888888888888887552 22222233444 7888888888888887 66653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.9e-09 Score=81.51 Aligned_cols=63 Identities=29% Similarity=0.298 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+.+|.+++..|+|++|+.+|+++++.+|+++.++. ||.++..+|++++|+. +.+++.++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999888 9999999999999999 889999999874
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=102.41 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH-HHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA-VRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA-L~l~P~n~~ 216 (479)
.+..++.++.+++.+|+|++|+..+++|++.+|++++++. ++.+...+|+..++.. +... ...+|+++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 4457888999999999999999999999999999998764 9999999998855554 5544 557888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.6e-08 Score=86.31 Aligned_cols=122 Identities=20% Similarity=0.141 Sum_probs=97.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSK 103 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klG 103 (479)
..+..++...+...+.+.+...|+. ..+.+.+|.++...|++++|+..|+.++...|+... ....+.|+.++...|
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 3446889999998899999888876 466788999999999999999999999998866532 223344778999999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
++++|+..++..-.- +-.+.++..+|.+|..+|++++|+..|++||
T Consensus 100 ~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999652110 1122477889999999999999999999985
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-07 Score=88.30 Aligned_cols=174 Identities=19% Similarity=0.160 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg 96 (479)
.....+...+..|++++|+..|.+.+...|. ...+.+.+|.++...|++++|+..|++++...|+++... ....+|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3445566788999999999999999986554 568899999999999999999999999999999976421 112233
Q ss_pred HHH-----------HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 97 ELY-----------KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 97 ~lY-----------~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
.++ ..++...+|+..|+..++.+|+..- ...|... ...+...-..--+.+|..|.+.|.|
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-----~~~A~~~----l~~l~~~la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-----AEEAKKR----LAELRNRLAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHcccH
Confidence 333 3344567899999999999887431 1111100 0122222233447789999999999
Q ss_pred HHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH
Q 011721 166 ESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 166 deA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..|+..|+.+++--|+.. .++. |+.+|..+|..+.|..
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999997 3455 9999999999885543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-08 Score=110.08 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=123.4
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG 127 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~ 127 (479)
.+|.+..++..|..++...+++++|++.++.++..+|+....++. +|.+|...+++++|... .++.+.+....
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~--~G~l~~q~~~~~~~~lv--~~l~~~~~~~~--- 98 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYI--SGILSLSRRPLNDSNLL--NLIDSFSQNLK--- 98 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHH--HHHHHHhhcchhhhhhh--hhhhhcccccc---
Confidence 678888999999999999999999999999999999998766554 45689999999988877 77766443211
Q ss_pred CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 128 KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
..+..+.-. .+.-.+++..+++.||.+|.++|++++|...|+++|+++|+|+.++| +|..|... ++++|+. +.
T Consensus 99 ---~~~ve~~~~-~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 ---WAIVEHICD-KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ---hhHHHHHHH-HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 011111111 12224566679999999999999999999999999999999999998 99999999 9999999 88
Q ss_pred HHHHhc
Q 011721 206 QAVRAS 211 (479)
Q Consensus 206 kAL~l~ 211 (479)
+|+...
T Consensus 174 KAV~~~ 179 (906)
T PRK14720 174 KAIYRF 179 (906)
T ss_pred HHHHHH
Confidence 998763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-08 Score=92.26 Aligned_cols=91 Identities=16% Similarity=0.023 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
......|++++|+.+|+.....+|.+...+++||.++..+|+|++||.+|..++.++|+++....+ +|.+|...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~--ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA--AAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHcCCHH
Confidence 456678999999999999999999999999999999999999999999999999999999987665 568999999999
Q ss_pred HHHHHHHHHHHhc
Q 011721 107 EEIELLKRKLKKT 119 (479)
Q Consensus 107 eAie~lekALkl~ 119 (479)
.|+..|+.|+...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999984
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=106.49 Aligned_cols=183 Identities=13% Similarity=0.005 Sum_probs=133.6
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~ 93 (479)
+.+...|-....++...|++++|...|.+..+ + +..+|+.|...|.+.|+.++|++.|++++.. .|+. ...+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~ 430 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH---VTFL 430 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH---HHHH
Confidence 34445666677888889999999999987654 2 3457889999999999999999999998765 4542 2234
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---chhHHh------cCC--CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKK---TEEVIA------CGG--KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl---~p~~la------~~~--k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
.+...+...|+.++|..+|+...+. .|.... ... ...+.|...... ....| +..+|..|..++...
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--~~~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--APFKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHc
Confidence 5567889999999999999998764 232110 000 122233222111 11223 335788888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
|+++.|+..+++.++++|++...|. |+.+|...|++++|..+.+.
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999888888 99999999999999994443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.5e-07 Score=97.60 Aligned_cols=212 Identities=17% Similarity=0.051 Sum_probs=149.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR--- 101 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k--- 101 (479)
...+....|++++|+.++.+....-.+....+...|.+|..+|++++|...|+.++..+|++...+ .+|..+...
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy--~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY--RGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH--HHHHHHHhhhcc
Confidence 335667789999999999887776666677888899999999999999999999999999986433 223333211
Q ss_pred --cCCHHHHHHHHHHHHHhchhHHh-----cCCCchH----HH-------------------Hhhc---hhHH----H--
Q 011721 102 --SKRIEEEIELLKRKLKKTEEVIA-----CGGKSTK----IA-------------------RSQG---RKTQ----I-- 142 (479)
Q Consensus 102 --lGr~deAie~lekALkl~p~~la-----~~~k~~~----~A-------------------~~~g---~k~~----l-- 142 (479)
....+.-.+.|.+....+|.... +.-.... .+ ...+ .+.. +
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 12466777888887777765211 1100000 00 0000 0000 0
Q ss_pred ----hh--------------hhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 143 ----TL--------------VQEL--SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 143 ----~L--------------~pe~--~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
.+ .+.. ..+++.|+..|...|++++|+.+..+||+..|..++.|. .|.+|-..|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 00 1111 256799999999999999999999999999999999998 99999999999999
Q ss_pred HH-HHHHHHhcCCCccchHHHH------HHHHHHHHHHHHHHhh
Q 011721 202 KS-LLQAVRASSRNEKMDESYA------KSFEHASLMLTELESQ 238 (479)
Q Consensus 202 i~-l~kAL~l~P~n~~a~~~~~------k~~~rA~eaL~el~~a 238 (479)
.. +..|-.+|+.|-.+.--.. ...+.|.+++..|.+.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 99 8899999998755422111 3356777777777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=94.37 Aligned_cols=175 Identities=18% Similarity=0.177 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC--ChH--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--DSQ--ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l----~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--da~--~~ 90 (479)
-|..++..+-..+++++|...|.+|... +.. ...++...+.+|... ++++|+.+|++++.+.-. +.. +.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5667777888899999999999999762 222 234566777777666 999999999999887432 221 23
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 91 LDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 91 l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
...-++.+|... |++++|+++|++|+.++..... .-.....+..+|.++..+|+|++|+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------------------~~~a~~~~~~~A~l~~~l~~y~~A~ 175 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------------------PHSAAECLLKAADLYARLGRYEEAI 175 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------------------hhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 334467899998 9999999999999998654211 0011247889999999999999999
Q ss_pred HHHHHHHHcCCCC------H-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDK------N-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdn------a-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..|+++....-++ . ..+. .+.|++..|++-.|.. +.+....+|....
T Consensus 176 ~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 176 EIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 9999999864322 1 2334 7889999999999999 7778888886543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-07 Score=95.98 Aligned_cols=141 Identities=21% Similarity=0.147 Sum_probs=121.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..++..++++.|+..+...|+..|++...+...+.++...++.++|++.+++++.++|+.+ .+...++.+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHhcCChH
Confidence 3567789999999999999999999998888899999999999999999999999999975 34455779999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+..+++.+.-+ |+++..|..||.+|..+|+-.+|...+
T Consensus 392 eai~~L~~~~~~~--------------------------p~dp~~w~~LAqay~~~g~~~~a~~A~-------------- 431 (484)
T COG4783 392 EAIRILNRYLFND--------------------------PEDPNGWDLLAQAYAELGNRAEALLAR-------------- 431 (484)
T ss_pred HHHHHHHHHhhcC--------------------------CCCchHHHHHHHHHHHhCchHHHHHHH--------------
Confidence 9999999888763 556679999999999999998887654
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+..|.-.|++++|+. +..+.+..
T Consensus 432 --AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455677799999999 77776655
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=101.64 Aligned_cols=93 Identities=10% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHH
Q 011721 164 DYESAERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELE 236 (479)
Q Consensus 164 dydeA~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~ 236 (479)
+...|....++++.+ +|.++.++. +|.++...|++++|.. +.+|+.++|+ ..+.. ......++..+++..++
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666666664 555565565 7777777777777777 7777777763 22111 11122355666666677
Q ss_pred hhhhcCCCChhhHHHHHhhhh
Q 011721 237 SQSMLQPTDYGEDKRKKILSS 257 (479)
Q Consensus 237 ~a~~~~P~~~~~~~~~~~~~~ 257 (479)
.++.++|.++...-.+|++..
T Consensus 478 ~A~~L~P~~pt~~~~~~~~f~ 498 (517)
T PRK10153 478 TAFNLRPGENTLYWIENLVFQ 498 (517)
T ss_pred HHHhcCCCCchHHHHHhcccc
Confidence 777777776655555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.9e-08 Score=95.98 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+++.||.+|+.+|+|++|+.+|++++...|+++ +++. +|.++..+|++++|+. +.+.+...|+.
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444555555555555555555555555544432 2333 4555555555555555 44444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=80.83 Aligned_cols=83 Identities=28% Similarity=0.258 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhh
Q 011721 66 LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLV 145 (479)
Q Consensus 66 ~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~ 145 (479)
+|+|++|+..|++++...|.+....+.+.++.+|.++|++++|+..+++ +...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------------------------- 54 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------------------------- 54 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------------------------
Confidence 5667777777777777776432222233356677777777777777766 3332
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+...++.+|.+|.++|+|++|+.+|++|
T Consensus 55 ~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 55 PSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 223345566677778888888887777765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-08 Score=108.35 Aligned_cols=178 Identities=16% Similarity=0.098 Sum_probs=139.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie 110 (479)
..++...|+..|-+++++++....++..||.+|..-.+...|.++|.++.++++.++.+. -+++++|.....+++|.+
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaa--aa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAA--AASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH--HHHHHHhhccccHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999987654 345699999999999999
Q ss_pred HHHHHHHhchhHHhcCC-----------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 111 LLKRKLKKTEEVIACGG-----------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 111 ~lekALkl~p~~la~~~-----------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
....+-+..|....... ...-.+..+++. .+..+|.+.+.|..||.+|...|.|.-|++.|.||..++
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 97766666554332110 001112212111 156678888899999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|++-.... .+.....+|+|++|+. +..-+...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 98876655 8888888999999988 66555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-07 Score=86.13 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.+++..|..+.+.|+|++|++.|++++...|..... ...+.++.+|.+.|++++|+..|++.++.+|...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------- 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------- 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-------
Confidence 46788999999999999999999999999999986432 2334577899999999999999999999988743
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCH---HH-----------
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----------NDYESAERYYMKALSLESDKN---KQ----------- 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----------GdydeA~~~yrKALeLdPdna---~a----------- 185 (479)
..+.+++.+|.+++.+ +...+|+..|+..+..-|++. .+
T Consensus 77 ----------------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 77 ----------------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ----------------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred ----------------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 2335778888876554 445699999999999999983 11
Q ss_pred ----HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 ----CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ----~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+|..|.+.|.+..|+. +...+...|+...
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 227899999999999999 8889999998654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=82.60 Aligned_cols=82 Identities=30% Similarity=0.358 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
.+|+++.|+.+|++++...|.. + +..++++||.+|+++|+|++|+..+++ +.++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-----------------------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~ 55 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-----------------------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP 55 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-----------------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-----------------------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC
Confidence 3689999999999999986531 1 234778899999999999999999999 99999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+..... +|.||..+|++++|+. +.++
T Consensus 56 ~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 8876655 9999999999999999 6654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-07 Score=104.88 Aligned_cols=174 Identities=13% Similarity=0.028 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLELYKR 101 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~lY~k 101 (479)
....++...|+.++|...|... +.+..+|..|...|...|+.++|+++|+++... .|+... .+.+...|.+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---~~~ll~a~~~ 601 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSR 601 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHhh
Confidence 3456677888999998888775 445667888888999999999999999888764 455432 2334467888
Q ss_pred cCCHHHHHHHHHHHHHh---chhHHh------cCC--CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 102 SKRIEEEIELLKRKLKK---TEEVIA------CGG--KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 102 lGr~deAie~lekALkl---~p~~la------~~~--k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
.|++++|..+|+...+. .|.... ... ...+.|....+. +.+.|+ ..+|..|-.++...|+.+.|+.
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~--m~~~pd-~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK--MPITPD-PAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH--CCCCCC-HHHHHHHHHHHHHcCChHHHHH
Confidence 89999999999988743 232110 000 111222221111 123343 3466666667778888888888
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
..+++++++|++...|. |+.+|...|++++|..+.+.
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 88888888888887777 88888888888888884443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.2e-08 Score=100.95 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+.|.+.|+|..|+..|++|+........+.......+. .-...++.||+.+|.++++|.+|+.+..++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~-----------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAE-----------ALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHH-----------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 466788888888888888888763321111110000000 011138899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|+++|+|..++. -|.+|+.+|+|+.|+. +.++++++|+|..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999999988 9999999999999999 9999999999954
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.5e-08 Score=77.54 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=55.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.+|...|++++|+..|+++++.+| ++..+++.+|.++..+|++++|+.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--------------------------DNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--------------------------THHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788999999999999999998854 4556999999999999999999999999
Q ss_pred HHHcCCCCH
Q 011721 175 ALSLESDKN 183 (479)
Q Consensus 175 ALeLdPdna 183 (479)
+++++|+++
T Consensus 57 a~~~~P~~p 65 (65)
T PF13432_consen 57 ALELDPDNP 65 (65)
T ss_dssp HHHHSTT-H
T ss_pred HHHHCcCCC
Confidence 999999985
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.3e-07 Score=89.57 Aligned_cols=191 Identities=22% Similarity=0.160 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--CChH--HHHHHHHHHHHHHcCCHHHHH
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA--DDSQ--ESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P--~da~--~~l~~aLg~lY~klGr~deAi 109 (479)
++++|..+|.+ -|..|...|++++|.++|.++....- ++.. +....-.+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 56666666655 47788899999999999988765432 2211 11112234666655 999999
Q ss_pred HHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC--CCCH---
Q 011721 110 ELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-NDYESAERYYMKALSLE--SDKN--- 183 (479)
Q Consensus 110 e~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-GdydeA~~~yrKALeLd--Pdna--- 183 (479)
.+|++|+.++-.... .. .-+.++.++|.+|... |++++|+++|++|+++- -+..
T Consensus 95 ~~~~~A~~~y~~~G~----~~----------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR----FS----------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHHCT-----HH----------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCc----HH----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 999999998643210 11 1235889999999999 99999999999999982 2222
Q ss_pred -HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc----chH-------HHH--HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 184 -KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK----MDE-------SYA--KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 184 -~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~----a~~-------~~~--k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
..+. +|.++..+|+|++|+. +.+.....-++.. +.. .++ .....|.+.+..+....+.-.++-+
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2344 9999999999999999 7666654332221 111 111 2344566666655544333334445
Q ss_pred hHHHHHhhhhhh
Q 011721 248 EDKRKKILSSCT 259 (479)
Q Consensus 248 ~~~~~~~~~~~~ 259 (479)
-.+...|+..+.
T Consensus 235 ~~~~~~l~~A~~ 246 (282)
T PF14938_consen 235 YKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=96.92 Aligned_cols=179 Identities=10% Similarity=-0.022 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLE 97 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~ 97 (479)
..|-....++...|++++|...|... .+.+..+|+.|...|.+.|++++|++.|+++... .|+. .....++.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ll~ 333 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSIMIR 333 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHH
Confidence 34445567777888888888888754 3345567888888888888888888888887654 3432 22334557
Q ss_pred HHHHcCCHHHHHHHHHHHHHhch--hH------HhcC--CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTE--EV------IACG--GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p--~~------la~~--~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.|.+.|++++|...+..+++..- .. +... ....+.|...+. .+...+...|+.|...|.+.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~----~m~~~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD----RMPRKNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH----hCCCCCeeeHHHHHHHHHHcCCHHH
Confidence 78888888888888888877531 10 0000 011112222111 1122344578888889999999999
Q ss_pred HHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 168 AERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 168 A~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
|++.|++.++. .|+. ..++ +-.++...|.+++|.. +.....
T Consensus 410 A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 410 AVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999988774 4553 3455 7788888999999999 444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=92.33 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 69 SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 69 ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
.++-+.-++.-+..+|+|++.+. .||.+|..+|+++.|...|.+|+++.| ++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~--~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------------------------~n 189 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWD--LLGRAYMALGRASDALLAYRNALRLAG--------------------------DN 189 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------CC
Confidence 44455556666667777766543 355677777777777777777777633 33
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 149 SRISGNLAWAYLQQ---NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 149 ~~al~nLG~ay~~l---GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++..+|.+++.+ ....+|...|++|+.+||++..+.. ||..++++|+|.+|+. ...-+...|.+..
T Consensus 190 ~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 190 PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 44666666665543 3556788888888888888887766 8888888888888888 5666777776543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.5e-06 Score=97.27 Aligned_cols=178 Identities=8% Similarity=-0.024 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNV 94 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~a 94 (479)
.|-.....+...|++++|+.+|...... .|+ ..+|..|...|.+.|++++|.+.|..+... .|+ ....+.
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD---~vTyna 584 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD---HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHH
Confidence 3334445556666666666666665542 233 345666666666667777777766666542 333 223344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhch--hHHhc--------CCCchHHHHhhchhHH-HhhhhhHHHHHHHHHHHHHHcC
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTE--EVIAC--------GGKSTKIARSQGRKTQ-ITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p--~~la~--------~~k~~~~A~~~g~k~~-l~L~pe~~~al~nLG~ay~~lG 163 (479)
++..|.+.|++++|++.|++..+... ....+ .......|...+.... ..+.|+ ...|..|..+|.+.|
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G 663 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCC
Confidence 55666777777777777766665421 10000 0011112221111100 011222 234555555555555
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHH-HHHHHHHcCCHHHHHH
Q 011721 164 DYESAERYYMKALSLESD-KNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 164 dydeA~~~yrKALeLdPd-na~a~n-LG~~L~~lGr~dEAi~ 203 (479)
++++|++.|++.++.... +...|+ |..+|.+.|++++|+.
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555554321 233444 5555555555555555
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.5e-08 Score=100.44 Aligned_cols=188 Identities=18% Similarity=0.129 Sum_probs=122.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHH----HHHhcCCChHHHHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKS----FRCLCADDSQESLDNVL 95 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lek----al~l~P~da~~~l~~aL 95 (479)
..+.-....|++...+.+|++||+.+-.+- ..|..||.+|..+++|++|+++-.. +..+...-.++...-.|
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 344556678999999999999998766543 3466799999999999999987543 12222222222222236
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC---------CC------------chHHHHhhc----hhHH--
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG---------GK------------STKIARSQG----RKTQ-- 141 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~l-------a~~---------~k------------~~~~A~~~g----~k~~-- 141 (479)
|+++...|.|++|+.+..+-|.+..+.. +++ ++ ....+.... +..+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 7888889999999999888887754321 111 00 001111100 0000
Q ss_pred Hhhh--hhH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 142 ITLV--QEL----SRISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 142 l~L~--pe~----~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
+++- -.+ -+++.+||+.|+-+|+|++|+.+.+.-|+|..... .++. ||.|++-+|+|+.|++ |..+
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 1111 111 16789999999999999999999999888876654 2343 9999999999999999 7776
Q ss_pred HHhc
Q 011721 208 VRAS 211 (479)
Q Consensus 208 L~l~ 211 (479)
+.+.
T Consensus 262 l~LA 265 (639)
T KOG1130|consen 262 LNLA 265 (639)
T ss_pred HHHH
Confidence 5443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-06 Score=71.16 Aligned_cols=167 Identities=22% Similarity=0.197 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAIN--AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~--l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
..+..........+++..++..+..++. ..+.....+..++.++...+.+.+|++.+..++...+.+...... ...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL--LAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHH--HHH
Confidence 4445566677788999999999999887 677777888999999999999999999999999887775322222 223
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhchh--HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 98 -LYKRSKRIEEEIELLKRKLKKTEE--VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 98 -lY~klGr~deAie~lekALkl~p~--~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|...|++++|+..|.+++...+. ... ..+..++..+...+++++|+..+.+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELA-------------------------EALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchH-------------------------HHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 788999999999999999886652 111 1333334445555666666666666
Q ss_pred HHHcCCC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 175 ALSLESD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 175 ALeLdPd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
++...+. ....+. ++.++...+++++|+. +..++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6666655 344443 5666666666666666 5555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-05 Score=68.35 Aligned_cols=168 Identities=27% Similarity=0.263 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH-HHHHCCChHHHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAV-VMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLLEL 98 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~-vL~~~GrydEAie~lekal~l~P~-da~~~l~~aLg~l 98 (479)
.+...+......+++..|+..+.+++...+.........+. ++...|++++|+..|.+++...|. .........++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 33344445555566677777777776655544333344444 677777777777777776665552 1111112223344
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
+...+++++|+..+.+++...+.. ...++..++..+...+++++|+..+.+++..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD-------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc-------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 566677777777777776664331 1125666777777777777777777777777
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.|.....+. ++..+...+.+++|.. +.+++...|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 776544444 6666665566777776 6666666664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-06 Score=83.90 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=117.0
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
..+..++..|..+...|+|++|++.|++++...|..+... ..+.++.+|.+.|++++|+..|++.++.+|..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~------- 102 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH------- 102 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC-------
Confidence 3566788899999999999999999999999999875432 23457789999999999999999999998874
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHHcCCCCHH---H---
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQN------------------DYESAERYYMKALSLESDKNK---Q--- 185 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG------------------dydeA~~~yrKALeLdPdna~---a--- 185 (479)
|+.+.+++.+|.++..++ ...+|+..|++.+..-|+..- +
T Consensus 103 ----------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 103 ----------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ----------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 334568899998875554 135788999999999999831 1
Q ss_pred ------------HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 ------------CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ------------~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+..|..|.+.|++..|+. +...+...|+...
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 126888999999999999 9999999998654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-06 Score=100.69 Aligned_cols=96 Identities=7% Similarity=0.040 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR-VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~-~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.|.....++...++++.|..+|....+.+.. +...+..|-..|.+.|++++|.++|+++...... +.....+.++..|
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy 517 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Confidence 3444445555666677777666666654322 2345556666666666666666666666554321 0112233445566
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 100 ~klGr~deAie~lekALk 117 (479)
.+.|++++|+..|.+...
T Consensus 518 ~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 666666666666666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-07 Score=100.87 Aligned_cols=197 Identities=17% Similarity=0.116 Sum_probs=139.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
....+++..|=...|+..|++. ..+-....+|...|+..+|.++..+.++..|+ + . +|.-+|
T Consensus 403 ~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~--~-------lyc~LG 464 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-P--R-------LYCLLG 464 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-c--h-------hHHHhh
Confidence 3455677778888888888762 34566788899999999999998888884443 2 2 334444
Q ss_pred CHHHHHHHHHHHHHhchhHH-------h---cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVI-------A---CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 104 r~deAie~lekALkl~p~~l-------a---~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
++-.=-.+|++|.++..... + +...+...+..|.+.. +.++|-....|+.+|.+..+++++..|..+|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 44444445555554432211 1 0112222333333221 56677777899999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH------HHHHHHHHHHHHHHHHHhhh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE------SYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~------~~~k~~~rA~eaL~el~~a~ 239 (479)
..+.++|++..++| |+.+|+.+|+..+|.. +.+|++-+-++..+.+ .....++.|.++...+..--
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999998 9999999999999999 8999998866655422 12456778887777766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.9e-06 Score=82.03 Aligned_cols=163 Identities=13% Similarity=-0.023 Sum_probs=110.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcC---C------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACG---G------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~---~------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.+....|+.+.|..++++.....|...... + ...+.|...+... ++-+|.+..++-.--.+...+|+--+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHH
Confidence 345667999999999999888776532100 0 1112222211111 33355566666666667788999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc----hH-HH-HHHHHHHHHHHHHHHhhh
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM----DE-SY-AKSFEHASLMLTELESQS 239 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a----~~-~~-~k~~~rA~eaL~el~~a~ 239 (479)
|++.+-.-++.-+.|.+++. |+.+|...|+|++|.- +++.+-+.|-++-. .+ .+ ........-..+.+.+++
T Consensus 139 aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 139 AIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999 78888999987642 11 11 122344555666777888
Q ss_pred hcCCCChhhHHHHHhhhhhhhhc
Q 011721 240 MLQPTDYGEDKRKKILSSCTYIN 262 (479)
Q Consensus 240 ~~~P~~~~~~~~~~~~~~~~~i~ 262 (479)
.++|.+.. .-..|+..|+.|.
T Consensus 219 kl~~~~~r--al~GI~lc~~~la 239 (289)
T KOG3060|consen 219 KLNPKNLR--ALFGIYLCGSALA 239 (289)
T ss_pred HhChHhHH--HHHHHHHHHHHHH
Confidence 88884332 4446666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.1e-07 Score=85.87 Aligned_cols=84 Identities=15% Similarity=0.208 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFE 226 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~ 226 (479)
.++++.||.++..+|+|++|+..|--|..++++++.... .|.||+.+|+.++|+. +..++. .|.+.. --.
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~-------l~~ 142 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES-------LRA 142 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH-------HHH
Confidence 347788899999999999999999999999999986655 9999999999999999 444554 555432 336
Q ss_pred HHHHHHHHHHhhhh
Q 011721 227 HASLMLTELESQSM 240 (479)
Q Consensus 227 rA~eaL~el~~a~~ 240 (479)
+|..+|..+.....
T Consensus 143 ~A~~~L~~l~~~~~ 156 (165)
T PRK15331 143 KALVYLEALKTAET 156 (165)
T ss_pred HHHHHHHHHHcccc
Confidence 78888877665543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.7e-07 Score=90.22 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=94.9
Q ss_pred HHHHHHHHHHH-HHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 53 DSALKDMAVVM-KQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 53 ~~Al~~LA~vL-~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
....+..|..+ ...|+|++|+..|+.++..+|++.. ....+.+|.+|...|++++|+..|+++++.+|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 35677778776 6689999999999999999999853 233456889999999999999999999998775
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
.+..+++++.+|.+|..+|++++|+..|+++++..|+...+
T Consensus 213 --------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 213 --------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred --------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 34578899999999999999999999999999999998743
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-07 Score=95.72 Aligned_cols=131 Identities=17% Similarity=0.116 Sum_probs=102.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCC----Ch---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----DS---------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~----da---------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~ 122 (479)
...-|..|.+.|+|..|+..|++++..-.. +. -...++.|+.+|.++++|.+|+...+++|.+.|.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~- 289 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN- 289 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-
Confidence 345688888888888888888887665331 10 1122344678999999999999999999998544
Q ss_pred HhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 123 IACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 123 la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
+..++|..|.+|..+|+|+.|+..|++|++++|+|-.+.+ |..|-....++.+.
T Consensus 290 -------------------------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 290 -------------------------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred -------------------------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4459999999999999999999999999999999988887 88888887777776
Q ss_pred HH--HHHHHHhcC
Q 011721 202 KS--LLQAVRASS 212 (479)
Q Consensus 202 i~--l~kAL~l~P 212 (479)
.. |.+.+..-+
T Consensus 345 ekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 345 EKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHhhccc
Confidence 55 445554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=74.57 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhch
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTE 120 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG-r~deAie~lekALkl~p 120 (479)
+.++..+|.++...|++++|+..|.+++.++|+++...++ +|.+|..+| ++++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~--~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYN--LGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHH--HHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566677777777777777777777777777776554433 456677777 57777777777777765
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=88.40 Aligned_cols=71 Identities=25% Similarity=0.156 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC---CHHHHHH-HHHHHHhcCCCcc
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN---RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG---r~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++.+-|..||.+|+.+|+++.|+..|++|+.|.|++++.+. +|.+++.+. .-.+|.. +.+++.++|.|..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 334445556666666666666666666666666666665555 555554432 2344444 5555666665554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=92.02 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=141.1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
-+.|++.--|...+-..++.+..-..|-.+.-..+|++|+..-|+....++..+..+...|+..+|..++.++++.+|++
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 35566777788788888888877788889999999999999888888778888888888999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
-+.++ +-..+......++.|..+|.+|-...+.. ++|+.-+.+..-+++.+
T Consensus 618 eeiwl--aavKle~en~e~eraR~llakar~~sgTe---------------------------Rv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 618 EEIWL--AAVKLEFENDELERARDLLAKARSISGTE---------------------------RVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHH--HHHHHhhccccHHHHHHHHHHHhccCCcc---------------------------hhhHHHhHHHHHhhhHH
Confidence 55443 23366777888999999999998864321 25566666667777777
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+.+++.+|+.-|+....|. ||.++..+++.+.|.. |...+...|+..-
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 777777777777777777766 7777777777777777 7777777776643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-07 Score=102.61 Aligned_cols=185 Identities=14% Similarity=-0.085 Sum_probs=133.6
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
++..|.-...|...|+++-..-|...|...|.+|..+++.+..+...++..|......++|..+...+-+..|...-...
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 45556556677778887765568899999999999999998888888888888888888888886655555553221100
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
-.-.|-.|.+.+++.+|+..|+-|++.+|+...... ..+..|...+.++ ..++|+.....+-.+.+...+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA-s~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA-SLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh-HhcCcHhHHHHHHHHHHHHHh
Confidence 011456677888888888888888888876532110 1111222222222 467788888889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
|+|.+|+..+...+..........+ ||.+++..-.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAK 679 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999988877777778 9999987643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-07 Score=100.08 Aligned_cols=134 Identities=16% Similarity=0.047 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.+...|.++...+.-++|.-++.++..++|-.+.. .+..|.++...|.+.+|.+.|..|+.++|..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------------ 717 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDH------------ 717 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------------
Confidence 34456677777777788877887777777765433 2334567777888888888888888775543
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER--YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~--~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
......||.+|.+.|+-.-|.. .+..|+.+||.++.+|. ||.++..+|+.++|.. |..|+++
T Consensus 718 --------------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 --------------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred --------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 3467778888888888777777 88888888888887776 8888888888888888 6667888
Q ss_pred cCCCcc
Q 011721 211 SSRNEK 216 (479)
Q Consensus 211 ~P~n~~ 216 (479)
++.++.
T Consensus 784 e~S~PV 789 (799)
T KOG4162|consen 784 EESNPV 789 (799)
T ss_pred ccCCCc
Confidence 777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=83.78 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=59.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+...|+++.++..||..|++.+.|.+|..+|+.|+...|+..+...||.+|.++|+..+|.+ ..+++.+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999987665559999999999999999 7777643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-06 Score=91.61 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=52.7
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
++.+.|+......-.|-..-..|+.++|..+.+.++..++...-.+..+|.++....+|+|||++|+.|+.+.|+|.+..
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qil 112 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQIL 112 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 34444444333333332333345555555555555555555555555555555555555555555555555555554443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
.++++ +-.++++++-....-.+.|++.|
T Consensus 113 rDlsl--LQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 113 RDLSL--LQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHH--HHHHHHhhhhHHHHHHHHHHhhh
Confidence 33222 33344444444444444444444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=91.98 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH--hcCCCccch-----HHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR--ASSRNEKMD-----ESYAK 223 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~--l~P~n~~a~-----~~~~k 223 (479)
+.|-..|.+.|++++|...|... +.+...|+ |...|...|+.++|+. +.+... ..|+...-. ..+..
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 34445666677777777766664 33455666 6667777777777777 444443 234332210 02224
Q ss_pred HHHHHHHHHHHHHhhhhcCCC
Q 011721 224 SFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 224 ~~~rA~eaL~el~~a~~~~P~ 244 (479)
.++++.+++..+.......|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCc
Confidence 456666666666655555564
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=92.81 Aligned_cols=125 Identities=24% Similarity=0.236 Sum_probs=106.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.|-.++...+++++|++.|+++...+|+. ...++.+|...++..+|+..+.++|...|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----AVLLARVYLLMNEEVEAIRLLNEALKENPQ---------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----------------
Confidence 35566777899999999999999999862 234678888999999999999999977544
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASSR 213 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~ 213 (479)
+..++...+..|+..++|+.|+.+.++|+.+.|++-..|. |+.+|..+|++++|+..+.++-..+.
T Consensus 233 ----------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 233 ----------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 3457888899999999999999999999999999999888 99999999999999986666655543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=77.49 Aligned_cols=92 Identities=28% Similarity=0.204 Sum_probs=70.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.++..+|+.++|+.+|++++..-.. .+.-.+++..+|..|..+|++++|+..+++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-----------------------~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS-----------------------GADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-----------------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345566667777777777777664111 011224889999999999999999999999
Q ss_pred HHHcCCC---CHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 175 ALSLESD---KNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 175 ALeLdPd---na~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++.-.|+ +..... ++.++...|+.+||+. ++.++.
T Consensus 64 ~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 64 ALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999898 444444 9999999999999999 888875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-07 Score=98.19 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=63.4
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ----CNLAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a----~nLG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
..+|+++.+++|+|.+|..+|+|++|+.+|++||+++|++..+ ||+|.+|..+|++++|+. +.+|+.+.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3478888999999999999999999999999999999999853 459999999999999999 99999973
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=91.41 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 34 DPSRAISLFWAAI---NAGDRVDSALKDMAVVMKQL---------DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 34 d~eeAi~~y~kAL---~l~p~~~~Al~~LA~vL~~~---------GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+.+.|+.+|.+|+ .++|.+..+|-.+|.++... ....+|....+++++++|.|+.+... +|.++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~--~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAI--MGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHh
Confidence 4678999999999 89999999999998887543 23456667778888899988876544 3455666
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
.|+++.|+..|++|+.++|. .+.+++.+|+++...|+.++|++++++|+.++|-
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn--------------------------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD--------------------------IASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc--------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 77788888888888887544 4458888888888889999999999999998888
Q ss_pred CHHHHH--HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 182 KNKQCN--LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 182 na~a~n--LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
-..+-. |-.-..-....++|+. +.+.-+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 765543 4442334456788888 655433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-05 Score=84.82 Aligned_cols=207 Identities=13% Similarity=0.061 Sum_probs=137.7
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHhcCCChH
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-----rydEAie~lekal~l~P~da~ 88 (479)
.+......+...+.+++..|++++|...|+..|..+|++...|..|..++.... ..+.-.+.|+++....|....
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 344333445566778899999999999999999999999988888888773333 456666777777666664210
Q ss_pred H-------------------------------------------------------------------------------
Q 011721 89 E------------------------------------------------------------------------------- 89 (479)
Q Consensus 89 ~------------------------------------------------------------------------------- 89 (479)
.
T Consensus 113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 0
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 90 --SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 90 --~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
+..+.++..|...|++++|++++++| |...|..++.|...|.+|...|++.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~a--------------------------I~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKA--------------------------IEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH--------------------------HhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 00011112222333333333333333 44456667899999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCccc--h------------HHH--HHHHHHHHH
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASSRNEKM--D------------ESY--AKSFEHASL 230 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~~a--~------------~~~--~k~~~rA~e 230 (479)
|.++++.|..+|+.|--..+ .+..+++.|+.++|.....-+..+..++.. . ..+ .+.++.|..
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999876666 899999999999999966555444322221 1 112 244566666
Q ss_pred HHHHHHhhhhcCCCCh
Q 011721 231 MLTELESQSMLQPTDY 246 (479)
Q Consensus 231 aL~el~~a~~~~P~~~ 246 (479)
.+-.+.+.+..--+||
T Consensus 327 ~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 327 RFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6666666655555555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-05 Score=86.87 Aligned_cols=181 Identities=16% Similarity=0.116 Sum_probs=152.2
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|....-..-........||...|...+..|+..+|+..+.++.--.+......++.|...|.++....|..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 35677778886554444333445667999999999999999999999988888888999999999999999999988764
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
- +.+--+.+...++..++|+.+++++|+.+|... .+|..+|.++.++++.+
T Consensus 652 R---v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------------------------Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 652 R---VWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------------------------KLWLMLGQIEEQMENIE 702 (913)
T ss_pred h---hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------------------------HHHHHHhHHHHHHHHHH
Confidence 2 222233556678999999999999999976543 48899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.|...|...+..-|+....+. |+.+--..|..-.|.. +.++...+|+|..
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 999999999999999998887 9999999999999999 9999999999865
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.4e-06 Score=92.15 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=131.4
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+.+...-.+..++|.+.+.+....++..|.+.+++...|..+...|+-++|....+.++..++...--+ .++|.+
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw--Hv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW--HVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhH--HHHHHH
Confidence 344554444456678899999999888888899999999999999999999999999998888877754322 346678
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..-.+|++||.+|+.||++.|+ +..+|.-|+.+-.++++|+.....=.+.+++
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~d--------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKD--------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCC--------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 88889999999999999988443 4458888899999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~l~kAL 208 (479)
.|.+-..|. ++.++...|++..|..+...+
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887 899999999999999944443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-07 Score=72.71 Aligned_cols=66 Identities=30% Similarity=0.423 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSL----ESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL----dPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|+...+++++|.+|..+|+|++|+.+|++|+.+ .++++ ..++ ||.++..+|++++|+. +.+++.+.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344569999999999999999999999999976 22333 3455 9999999999999999 88888763
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-07 Score=70.32 Aligned_cols=62 Identities=37% Similarity=0.467 Sum_probs=57.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|.+.++|++|+.++++++.++|+++..+. +|.+|..+|++++|+. +.+++...|++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 457899999999999999999999999998887 9999999999999999 9999999997654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-07 Score=69.31 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=51.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++..|+|++|+..|++++..+|++..++. ||.||+.+|++++|.. +.+.+..+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 46889999999999999999999999887 9999999999999999 888889999753
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-05 Score=75.05 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR-CLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal-~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|++.+.....+.+...|... -.+.||..+.+.|++.||...|++++ .+.-.++... ++++......+++.+|...
T Consensus 70 ldP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l--LglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 70 LDPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML--LGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred cChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH--HHHHHHHHhhccHHHHHHH
Confidence 477887777777787777654 36789999999999999999998866 4566666544 4466788899999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAIC 191 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~ 191 (479)
++...+..|.... ++-...+|.+|..+|++.+|+..|+.++..-|+....+..+..
T Consensus 147 Le~l~e~~pa~r~------------------------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 147 LEDLMEYNPAFRS------------------------PDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred HHHHhhcCCccCC------------------------CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9998887654321 1245678999999999999999999999999997776778999
Q ss_pred HHHcCCHHHHHH-HHHH
Q 011721 192 LIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 192 L~~lGr~dEAi~-l~kA 207 (479)
+..+|+.+||.. +...
T Consensus 203 La~qgr~~ea~aq~~~v 219 (251)
T COG4700 203 LAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHhcchhHHHHHHHHH
Confidence 999999999988 5443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-05 Score=87.74 Aligned_cols=167 Identities=13% Similarity=-0.065 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---HHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDR---------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ---ESL 91 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~---------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~---~~l 91 (479)
....+.+..+++++|..++..+...-+. .......+|.++...|++++|...+++++...+.... ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 3445667789999999999887653111 1234456788889999999999999998886554321 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...++.++...|++++|+..+++++.+....... .....++.++|.++..+|++++|..+
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~--------------------~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVY--------------------HYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch--------------------HHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3446678889999999999999999874431100 00112456666666666677766666
Q ss_pred HHHHHHcCCC-----CH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 172 YMKALSLESD-----KN---KQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 172 yrKALeLdPd-----na---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+++++.+... .. ..+. +|.++...|++++|.. +.+++.+
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 6666665211 11 1122 5666666666666666 5555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=68.68 Aligned_cols=66 Identities=27% Similarity=0.447 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.++.+|..+|++++|+.+|++++++. .... .-.++...+++++|.+|..+|++++|+.+|+
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~------------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIE-EQLG------------------DDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT------------------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH-HHHC------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777777777777777762 1110 0012334689999999999999999999999
Q ss_pred HHHHc
Q 011721 174 KALSL 178 (479)
Q Consensus 174 KALeL 178 (479)
+|+++
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99986
|
... |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-05 Score=88.38 Aligned_cols=169 Identities=13% Similarity=-0.009 Sum_probs=125.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-c----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHHHHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDR-V----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESLDNVLL 96 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~-~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l~~aLg 96 (479)
+.++...|++++|..++++++...+. . ..++..+|.++...|++++|+..+++++...... ........++
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34567889999999999999984332 1 2356789999999999999999999988764432 1122334467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.++...|++++|...+++++.+....... . .+....++..+|.++..+|++++|..++++++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~--~----------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLE--Q----------------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccc--c----------------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 88999999999999999999874331100 0 00111245678999999999999999999999
Q ss_pred HcCCCC-----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 177 SLESDK-----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 177 eLdPdn-----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.+.... ...+. +|.++...|++++|.. +.+++.+..
T Consensus 601 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 601 EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 874321 23344 8999999999999999 777766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-07 Score=68.94 Aligned_cols=65 Identities=28% Similarity=0.386 Sum_probs=55.9
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|++++|+..|++++..+|. +.++++.||.+|..+|++++|...+++++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------------------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5689999999999999998554 44588999999999999999999999999999
Q ss_pred CCCHHHHH-HHH
Q 011721 180 SDKNKQCN-LAI 190 (479)
Q Consensus 180 Pdna~a~n-LG~ 190 (479)
|+++..+. ++.
T Consensus 56 ~~~~~~~~l~a~ 67 (68)
T PF14559_consen 56 PDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHH
T ss_pred cCHHHHHHHHhc
Confidence 99877665 554
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-05 Score=85.71 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=113.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
+.+..++++++|+.-..+.+...|++..++..--+++.+.++|++|+...+.-....-.+. +.+--+-|..++++.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~---~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS---FFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch---hhHHHHHHHHHcccHH
Confidence 4566778999999999999999999999999999999999999999965554222211111 1011234677899999
Q ss_pred HHHHHHH-------HHHHhchhHHhcCCCchHHHHhhchhHH-Hhhhh----------------------------h-HH
Q 011721 107 EEIELLK-------RKLKKTEEVIACGGKSTKIARSQGRKTQ-ITLVQ----------------------------E-LS 149 (479)
Q Consensus 107 eAie~le-------kALkl~p~~la~~~k~~~~A~~~g~k~~-l~L~p----------------------------e-~~ 149 (479)
+|+..++ .++.+.-+..- -...++.|...++... -..+. + .-
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 9999988 23332111110 0012223332222211 00000 0 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC---H----H-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL-------ESDK---N----K-QCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL-------dPdn---a----~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+.+||.+.++...|+|.+|++.+++|+.+ +-.+ . . ... |+.+|..+|+-+||.. +...+..+|
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 45678888888888888888888888443 1111 0 1 123 7888888888888888 777777777
Q ss_pred CCc
Q 011721 213 RNE 215 (479)
Q Consensus 213 ~n~ 215 (479)
.+.
T Consensus 256 ~D~ 258 (652)
T KOG2376|consen 256 ADE 258 (652)
T ss_pred CCc
Confidence 654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.3e-06 Score=84.07 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=139.8
Q ss_pred hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 14 KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 14 k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
.+|+|...-+. +..+.+.+++.||..+.--.+.+|+...++..||.+|....+|.+|..+|+++-.+.|...+..+..
T Consensus 7 ~i~EGeftavi--y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVV--YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHH--HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 35666433221 2235688999999999888889998888999999999999999999999999999999866554443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhh------chhHHHhhhh--hHHHHHHHHHHHHHHcCCH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ------GRKTQITLVQ--ELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~------g~k~~l~L~p--e~~~al~nLG~ay~~lGdy 165 (479)
+..+.+.+.+.+|+......... +..... ....+.|+.. +-..-+.-.| ++++...+.|.++++.|+|
T Consensus 85 --AQSLY~A~i~ADALrV~~~~~D~-~~L~~~-~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 85 --AQSLYKACIYADALRVAFLLLDN-PALHSR-VLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred --HHHHHHhcccHHHHHHHHHhcCC-HHHHHH-HHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 45667889999998877655542 111100 0000011110 0000022223 4568899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHcCCHHHHHH-HH----HHHHhcCC
Q 011721 166 ESAERYYMKALSLESDKN-KQCNLAICLIRLNRIAEAKS-LL----QAVRASSR 213 (479)
Q Consensus 166 deA~~~yrKALeLdPdna-~a~nLG~~L~~lGr~dEAi~-l~----kAL~l~P~ 213 (479)
++|++-|..|++..--++ .+|+++.++...|+++.|+. .. +.++..|+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 999999999999988887 57889999999999999998 44 34555665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=67.99 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=58.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|...+++++|+.++++++.++|. ++.++..+|.+|..+|++++|+..|++++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD--------------------------DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc--------------------------cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5789999999999999999998555 44589999999999999999999999999
Q ss_pred HcCCCCHHHHH
Q 011721 177 SLESDKNKQCN 187 (479)
Q Consensus 177 eLdPdna~a~n 187 (479)
++.|+++.+..
T Consensus 57 ~~~p~~~~~~~ 67 (73)
T PF13371_consen 57 ELSPDDPDARA 67 (73)
T ss_pred HHCCCcHHHHH
Confidence 99999987655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=82.78 Aligned_cols=64 Identities=22% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++|.||.+++.+|+|++|...|..++.-.|+++ +++. ||.++..+|+.++|.. +.+.+...|+.
T Consensus 180 A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 180 AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 555566666666666666666666666555553 3444 6666666666666666 55555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.5e-05 Score=69.64 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=74.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---ChHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---DSQESLDNVLL 96 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~---da~~~l~~aLg 96 (479)
+....++-..|+.++|+.+|++|+..+.. -..++..+|..|..+|++++|+..+++++...|+ +.... ..++
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~--~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR--VFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH--HHHH
Confidence 34455777889999999999999996543 3568899999999999999999999999999888 33332 3345
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALk 117 (479)
.++...|++++|+..+..++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 678899999999999887765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=75.79 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=116.3
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
++..+.+...|+..+-| +++......|++.+|..+|.+++. +--.+...+..++......+++.+|...++.+.+.+|
T Consensus 77 Rea~~~~~~ApTvqnr~-rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 77 REATEELAIAPTVQNRY-RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHhhchhHHHHH-HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 45667788888877664 455677888999999999999997 5555677788999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
..-...-.+.++.+|..+|++.+|...|+.++..+|... +....|..+..+|+
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---------------------------ar~~Y~e~La~qgr 208 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---------------------------ARIYYAEMLAKQGR 208 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---------------------------HHHHHHHHHHHhcc
Confidence 643222334567899999999999999999999887643 33456778889999
Q ss_pred HHHHHHHHHHHHHc
Q 011721 165 YESAERYYMKALSL 178 (479)
Q Consensus 165 ydeA~~~yrKALeL 178 (479)
.++|...|.....-
T Consensus 209 ~~ea~aq~~~v~d~ 222 (251)
T COG4700 209 LREANAQYVAVVDT 222 (251)
T ss_pred hhHHHHHHHHHHHH
Confidence 99988877766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-05 Score=85.44 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=93.8
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 23 VRAKRAQL-VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 23 v~a~~~~L-~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
++++-+.+ ....|+.|+.+.++-... .......+.-|.++.++++.|+|++.+. ..++.+.. +...-+.++.+
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~-~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~--ll~L~AQvlYr 122 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGAL-LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDK--LLELRAQVLYR 122 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchh-hhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchH--HHHHHHHHHHH
Confidence 44544444 446788888544432211 1111122577889999999999999988 33443321 12223577888
Q ss_pred cCCHHHHHHHHHHHHHhchhHH----------------h----cCC--------------------CchHHHHhhchhHH
Q 011721 102 SKRIEEEIELLKRKLKKTEEVI----------------A----CGG--------------------KSTKIARSQGRKTQ 141 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~l----------------a----~~~--------------------k~~~~A~~~g~k~~ 141 (479)
+|+|++|+..|+..++-..+.. + ..+ ..+..|.....++.
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999998876432100 0 000 11112222222221
Q ss_pred ------H--------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 142 ------I--------TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 142 ------l--------~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
+ .+..+-.-+...|+.||..+|+.++|...|...+..+|-+.
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 0 11111225678999999999999999999999999999886
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0001 Score=73.40 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=134.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH-HHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDR---VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN-VLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~---~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~-aLg~l 98 (479)
...+...+..|++++|+..|++.....|. ...+...++.++...++|++|+..+++.+.+.|.++.+.+.. ..|.+
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34566788999999999999998876554 467889999999999999999999999999999876542221 12222
Q ss_pred H--------HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 99 Y--------KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 99 Y--------~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+ ..+.-..+|+..|+..+..+|...-. ..|.... ..+...-+.-=..+|..|.+.|.|-.|+.
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya-----~dA~~~i----~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA-----PDAKARI----VKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch-----hhHHHHH----HHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 2 22334567888888888888763210 0000000 01111112223677999999999999999
Q ss_pred HHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 011721 171 YYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRASSRNE 215 (479)
Q Consensus 171 ~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~ 215 (479)
.++.+++--|+.. +++. |..+|..+|-.++|....+.|..+..+.
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999999988876 4566 8999999999999999999988876554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.2e-05 Score=83.81 Aligned_cols=130 Identities=11% Similarity=0.003 Sum_probs=97.5
Q ss_pred HHHHHHHHHCC---ChHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHHhchh
Q 011721 57 KDMAVVMKQLD---RSEEAIEAIKSFR---CLCADDSQESLDNVLLELYKRS---K------RIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 57 ~~LA~vL~~~G---rydEAie~lekal---~l~P~da~~~l~~aLg~lY~kl---G------r~deAie~lekALkl~p~ 121 (479)
+..|......+ ..+.|+.+|.+++ .++|+.+.++- +++.++... | ...+|.+.-++|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~--~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA------ 330 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYC--LLAECHMSLALHGKSELELAAQKALELLDYV------ 330 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHH------
Confidence 44555554443 4567888899999 88998765432 233333221 1 122233333333
Q ss_pred HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 122 VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 122 ~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
+++++.++.+++.+|.++...++++.|+..|++|+.++|+.+.++. +|.++.-.|+.++
T Consensus 331 --------------------veld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 331 --------------------SDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred --------------------HhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 4567788889999999999999999999999999999999999887 9999999999999
Q ss_pred HHH-HHHHHHhcCCC
Q 011721 201 AKS-LLQAVRASSRN 214 (479)
Q Consensus 201 Ai~-l~kAL~l~P~n 214 (479)
|+. +.++++++|.-
T Consensus 391 a~~~i~~alrLsP~~ 405 (458)
T PRK11906 391 ARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHhccCchh
Confidence 999 99999999953
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=86.60 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=141.2
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh--cCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA--CGG 127 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la--~~~ 127 (479)
|.....-..+|.++...|-..+|+.+|+++-..+| .+.+|...|+..+|.+...+-++-.|.... ..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~----------vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDP----------VILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHH----------HHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 33444556799999999999999999998755544 246899999999999999999985444321 111
Q ss_pred ------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 128 ------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 128 ------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
.-++.|...++ .-...|...+|...+..++|.+|.++++.+++++|-....+. +|.|.++++++..
T Consensus 465 Dv~~d~s~yEkawElsn-------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSN-------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhccChHHHHHHHHHhh-------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 11223332222 223457788888888899999999999999999999998877 9999999999999
Q ss_pred HHH-HHHHHHhcCCCccchH----HH--HHHHHHHHHHHHHHHhhhhcCCC---Chh-----hHHHHHhhhhhhhhcCCC
Q 011721 201 AKS-LLQAVRASSRNEKMDE----SY--AKSFEHASLMLTELESQSMLQPT---DYG-----EDKRKKILSSCTYINGSE 265 (479)
Q Consensus 201 Ai~-l~kAL~l~P~n~~a~~----~~--~k~~~rA~eaL~el~~a~~~~P~---~~~-----~~~~~~~~~~~~~i~~~~ 265 (479)
|.. |...+.++|++..+-. .+ .+...+|-..+.+..+.--.++. +++ +.+.+...+.+.++..++
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999 9999999999977522 22 24445666666665544322221 111 334445555666655555
Q ss_pred CC
Q 011721 266 EN 267 (479)
Q Consensus 266 ~~ 267 (479)
-+
T Consensus 618 ~~ 619 (777)
T KOG1128|consen 618 KK 619 (777)
T ss_pred hh
Confidence 44
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-06 Score=89.03 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=62.9
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+|++..+++++|.+|..+|+|++|+..|+++++++|+++.+ ...+.++.+|..+|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999999998754 23344678999999999999999999998
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-06 Score=87.16 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHcCC
Q 011721 35 PSRAISLFWAAINA----GDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----DSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 35 ~eeAi~~y~kAL~l----~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~----da~~~l~~aLg~lY~klGr 104 (479)
++.|..+|..-+++ ++. ...++-+||..|.-+|+|++||..-+.-+.+... -+.-..+..|+++|.-+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 56677777776653 222 2246778999999999999999987664444322 1122223346789999999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK-- 182 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn-- 182 (479)
++.|+++|++++.+.- ..+.+. ..+...+.||+.|.-+.+|+.||.|+.+-|+|...-
T Consensus 251 fe~A~ehYK~tl~LAi--------------elg~r~------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAI--------------ELGNRT------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred cHhHHHHHHHHHHHHH--------------Hhcchh------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998732 222111 123466899999999999999999999988875432
Q ss_pred ----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 183 ----NKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 183 ----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
..+|- ||.+|..+|..++|+. ..+.+++
T Consensus 311 riGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 311 RIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23455 9999999999999999 6666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=76.81 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
++.|.+.++.....+|.+.+++++-|.+|..+.++...-+ ....+++|+.-|++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~e--------------------------s~~miedAisK~ee 60 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPE--------------------------SKKMIEDAISKFEE 60 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHH--------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcch--------------------------HHHHHHHHHHHHHH
Confidence 4555666666666666666666666666655433211000 00123456666666
Q ss_pred HHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCH
Q 011721 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND-----------YESAERYYMKALSLESDKN 183 (479)
Q Consensus 115 ALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd-----------ydeA~~~yrKALeLdPdna 183 (479)
||.++ |+..++++++|++|..++. |++|..+|++|..++|++.
T Consensus 61 AL~I~--------------------------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 61 ALKIN--------------------------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHH---------------------------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHhcC--------------------------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 66664 4455688999999887764 5555566666666666554
Q ss_pred H
Q 011721 184 K 184 (479)
Q Consensus 184 ~ 184 (479)
.
T Consensus 115 ~ 115 (186)
T PF06552_consen 115 L 115 (186)
T ss_dssp H
T ss_pred H
Confidence 3
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-05 Score=80.21 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=103.3
Q ss_pred CCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 16 PAGDSPYVRAK--RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~--~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
|...+.|+-.+ .+....++++.|+.+|++..+.+|. +...|+.++...++-.+|+..+.+++..+|.+... ..
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L--L~ 238 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL--LN 238 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH--HH
Confidence 45555565432 2334458999999999998888875 45568999999999999999999999999998543 33
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
..+..+...|+++.|+...++|+.+.|. +-+.|+.|+.+|..+|+|++|+..+.
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~--------------------------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPS--------------------------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCch--------------------------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4568899999999999999999998655 34599999999999999999997665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-05 Score=77.34 Aligned_cols=183 Identities=17% Similarity=0.085 Sum_probs=127.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
.+...|+..|+.+++-.+..+.... +.-.-+|.++..+|+|++|+..|+-+...+.-++ .+...|+.++.-+|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHH
Confidence 5678899999999998887665544 4455689999999999999999998877443333 344456788889999999
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHH-Hh---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ-IT---LVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~-l~---L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
|...-.+|-+.--....+ ...|...+...+ +. -..+..+-...|+.+.+..-.|.+|+..|.++|.-+|+..
T Consensus 110 A~~~~~ka~k~pL~~RLl----fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKAPKTPLCIRLL----FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhCCCChHHHHHH----HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 988766654320000000 000111111101 00 0122224456788888888899999999999999998876
Q ss_pred HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 184 KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
..-. +|.||.++.=++-+.+ +.--|...|+..-+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 5433 9999999999999999 66678888987654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-05 Score=73.73 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=75.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+-++..|+|++|..-|..||.+.|....- .-.-.|.|.|.++++++..+.|+....|||
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e---------------------~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTE---------------------ERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHH---------------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 33456677777777777777776654320 001267888888889999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+|+|.+..++. .|.+|-++.+|++|+. |.+.+..+|....+
T Consensus 162 el~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 162 ELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 99998888887 7888888888999998 88888888876554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=76.83 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKN-----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKS 224 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna-----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~ 224 (479)
-|+-++..|+|++|..-|..||++-|... ..|. -|.++++++..+.|+. +.+||.++|.+..+... .-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 45566777888888888888888877764 1232 7778888888888888 88888888876664331 1123
Q ss_pred HHHHHHHHHHHHhhhhcCCCChhhHHHHHhh
Q 011721 225 FEHASLMLTELESQSMLQPTDYGEDKRKKIL 255 (479)
Q Consensus 225 ~~rA~eaL~el~~a~~~~P~~~~~~~~~~~~ 255 (479)
+++..++|..+.+-+..+|.... .++.+.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~e--ar~~i~ 209 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRRE--AREAIA 209 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 36677777777777777776553 444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=70.87 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++.-|.-.++.|+|++|++.|+.+....|-...+ ...+.|+.+|.+.|++++|+..+++-|+++|....
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-------- 82 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-------- 82 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC--------
Confidence 344555555555555555555555555555543211 11223445555555555555555555555554321
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCCH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQND---------------YESAERYYMKALSLESDKN 183 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd---------------ydeA~~~yrKALeLdPdna 183 (479)
...+++..|.+++.+.. ..+|...|++.+..-|++.
T Consensus 83 ---------------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 83 ---------------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ---------------ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11256666666666555 6677777777777777765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-06 Score=86.41 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+-|.++|+|++||.+|.+++.++|.. +-.+.|.+.+|+++++|..|+.....|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~N--------------------------pV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHN--------------------------PVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCC--------------------------ccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 578999999999999999999886643 237899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++-....+|. .|.+-..+|...||.. ++.+|++.|++..
T Consensus 158 iaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 158 IALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 999999999998 9999999999999999 9999999998754
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=83.02 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+...|.-|+.+|.|+|||.+|.+.+.++|-++-.+.+.+ ..|.++.+|..|....+.|+.++...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA--~AYlk~K~FA~AE~DC~~AiaLd~~Y------------- 164 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRA--LAYLKQKSFAQAEEDCEAAIALDKLY------------- 164 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHH--HHHHHHHHHHHHHHhHHHHHHhhHHH-------------
Confidence 456899999999999999999999999998876665555 56999999999999999999885432
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
..+|...|.+-..+|+..+|.+.|+.+|++.|++...
T Consensus 165 -------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 165 -------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred -------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 2488999999999999999999999999999997643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-05 Score=71.83 Aligned_cols=111 Identities=10% Similarity=-0.021 Sum_probs=93.8
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc
Q 011721 46 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC 125 (479)
Q Consensus 46 L~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~ 125 (479)
..+.++.-+..+..|.-+.++|++++|...|+-+...+|-+... .++|+.++..+|+|++|+..|-.|..+.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------ 101 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLL------ 101 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 34556666778889999999999999999999999999998764 4667899999999999999999888763
Q ss_pred CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 126 ~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
++++...+..|.+|+.+|+.++|..+|..|++ .|.+...
T Consensus 102 --------------------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 102 --------------------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred --------------------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 34455789999999999999999999999999 5665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.7e-05 Score=77.42 Aligned_cols=131 Identities=18% Similarity=0.063 Sum_probs=80.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
++++..++++.|...++.+-+.+++..-+....|.+....| .+.+|.-.|+.+....+..+ .+.++++.++..+|+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~--~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP--KLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH--HHHHHHHHHHHHCT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCC
Confidence 45556666666666666655555443322222333333333 46666666666555544433 233445566667777
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY-ESAERYYMKALSLESDKN 183 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy-deA~~~yrKALeLdPdna 183 (479)
+++|.+.+++|+.. +|.+++++.|+..+...+|+. +.+.+++.+....+|+++
T Consensus 217 ~~eAe~~L~~al~~--------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 217 YEEAEELLEEALEK--------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHCCC---------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777766666554 456677999999999999999 677888888888999998
Q ss_pred HH
Q 011721 184 KQ 185 (479)
Q Consensus 184 ~a 185 (479)
..
T Consensus 271 ~~ 272 (290)
T PF04733_consen 271 LV 272 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00011 Score=66.78 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+-.-|+.+...|+.++|++.|.+++.+.|..+.++.+ -+..|.-+|+.++|+..+++|+++. +..+..+.
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNN--RAQa~RLq~~~e~ALdDLn~AleLa-------g~~trtac- 115 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNN--RAQALRLQGDDEEALDDLNKALELA-------GDQTRTAC- 115 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhcc--HHHHHHHcCChHHHHHHHHHHHHhc-------CccchHHH-
Confidence 4456888999999999999999999999998755433 4578899999999999999999882 22222222
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.++...|.+|..+|+.+.|...|+.|-++....+
T Consensus 116 --------------qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 116 --------------QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred --------------HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 3788999999999999999999999988877664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0024 Score=66.98 Aligned_cols=191 Identities=18% Similarity=0.112 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~-p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
.|..+..+.-..||.+.|-.++.++-+.. ++....+..++.++..+|+++.|..-..++++..|.++... .....+|
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vl--rLa~r~y 197 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVL--RLALRAY 197 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHH--HHHHHHH
Confidence 44556667777899999999999998873 33445677889999999999999999999999999987642 2334889
Q ss_pred HHcCCHHHHHHHHHHHHHhc----hhHH-----hcCCCchHHHHh----hchhHH---H-hhhhhHHHHHHHHHHHHHHc
Q 011721 100 KRSKRIEEEIELLKRKLKKT----EEVI-----ACGGKSTKIARS----QGRKTQ---I-TLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~----p~~l-----a~~~k~~~~A~~----~g~k~~---l-~L~pe~~~al~nLG~ay~~l 162 (479)
...|++.+....+.+.-+.. ++.. +..+. -+.+.. .+.+.- + .-...++++...++.=+.+.
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl-L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL-LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH-HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 99999999888877665431 1100 00000 000000 000000 0 00001122333333334444
Q ss_pred -------------------------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 163 -------------------------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 163 -------------------------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+++..=++..++.++..|+++..+. ||..++..+.|.+|.. ++.|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555555555566666788887766 9999999999999999 777888
Q ss_pred hcCCC
Q 011721 210 ASSRN 214 (479)
Q Consensus 210 l~P~n 214 (479)
..|+.
T Consensus 357 ~~~s~ 361 (400)
T COG3071 357 LRPSA 361 (400)
T ss_pred cCCCh
Confidence 87764
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=77.80 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHH-----
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESY----- 221 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~----- 221 (479)
+|+.|.-++..|+|.+|+..|..-+..-|+.. .++. ||.++..+|+|++|.. +...+...|++.++-+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 57788888999999999999999999999985 5677 9999999999999999 999999999998874421
Q ss_pred ----HHHHHHHHHHHHHHHhhhhcCC
Q 011721 222 ----AKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 222 ----~k~~~rA~eaL~el~~a~~~~P 243 (479)
+...+.|...|+++.+..+..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 2445778888888887764443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00048 Score=69.08 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=115.3
Q ss_pred CCHHHHHH-HHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 33 KDPSRAIS-LFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110 (479)
Q Consensus 33 gd~eeAi~-~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie 110 (479)
++.+.-+. .++..+....... ..+..-|.+|...|++++|+........++ ....+ ..++.++.+++-|+.
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~--VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALN--VQILLKMHRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHH--HHHHHHHHHHHHHHH
Confidence 44444333 4444444333333 344455788999999999999887643332 11111 256788899999999
Q ss_pred HHHHHHHhchhHHh-----------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 111 LLKRKLKKTEEVIA-----------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 111 ~lekALkl~p~~la-----------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
.+++...++.+..- ..+...+.|...+... -..-+..+..++.++.+.+.+|+|++|+..++.||.-+
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~-s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99999998776431 0111111111111100 01123345678889999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HH-HHHHhcCCCcc
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LL-QAVRASSRNEK 216 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~-kAL~l~P~n~~ 216 (479)
+++++.+. +-.+-..+|.-.++.. +. +.....|+++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99998874 8888888999888888 55 45566777655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=66.54 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=65.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|....+.|+|++|++.|+.....+|.+.- ...+...||.+|+..|+|++|+..|++-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-----------------------a~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEY-----------------------AEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcc-----------------------cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45567899999999999999998876432 1247799999999999999999999999
Q ss_pred HHcCCCCHH---HHH-HHHHHHHcCC
Q 011721 176 LSLESDKNK---QCN-LAICLIRLNR 197 (479)
Q Consensus 176 LeLdPdna~---a~n-LG~~L~~lGr 197 (479)
++++|.++. ++. .|.+++.+..
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 999999973 344 8888888765
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.6e-05 Score=70.89 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC-----------HHHHHH-HHHHHHhcCCCcc
Q 011721 164 DYESAERYYMKALSLESDKNKQCN-LAICLIRLNR-----------IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 164 dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr-----------~dEAi~-l~kAL~l~P~n~~ 216 (479)
-+++|+.=|++||.|+|+..+++. ||.+|..++. |++|.. +.+|+..+|+|..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 467899999999999999998876 9999988764 788888 7889999998743
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-05 Score=54.52 Aligned_cols=33 Identities=45% Similarity=0.656 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 489999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=70.37 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
...+.+..++...|.|.-....+.++++.+|..- ..+...|+.+-++.|+.+.|..+|+++-+.......
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~-p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--------- 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE-PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--------- 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---------
Confidence 3556788889999999999999999999985432 234556888999999999999999977654222111
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.....-++.+.+.+|.-+++|.+|...|.+.+..||.++.+.| .|.|++-+|+..+|++ +..++...
T Consensus 248 -----------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 248 -----------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred -----------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1112237788999999999999999999999999999999988 9999999999999999 88999999
Q ss_pred CCCcc
Q 011721 212 SRNEK 216 (479)
Q Consensus 212 P~n~~ 216 (479)
|....
T Consensus 317 P~~~l 321 (366)
T KOG2796|consen 317 PRHYL 321 (366)
T ss_pred Cccch
Confidence 97543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=57.59 Aligned_cols=41 Identities=32% Similarity=0.325 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
+++..||.+|..+|++++|++.|+++++++|+++.++. ||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 47899999999999999999999999999999998877 775
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.8e-05 Score=52.47 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++.+|.+|..+|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 588999999999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00088 Score=69.77 Aligned_cols=143 Identities=13% Similarity=-0.004 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
.++..||.++...+.|+++++.|+.++.+..++.+ ..+...|+.+|....++++|+-+..+|+++...... ....
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-Cchh
Confidence 45667888888888888888888888876544322 233445778888888888888888888887332110 0000
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CH---HHHH-HHHHHHHcCCHHHHH
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD---KN---KQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd---na---~a~n-LG~~L~~lGr~dEAi 202 (479)
+ ....-+++.++.+|..+|....|.++.+.|.++.-. .+ .... +|.+|...|+.+.|.
T Consensus 202 ---~------------kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 202 ---L------------KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred ---H------------HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 0 001237899999999999999999999999887432 22 2233 999999999999999
Q ss_pred H-HHHHHHhcC
Q 011721 203 S-LLQAVRASS 212 (479)
Q Consensus 203 ~-l~kAL~l~P 212 (479)
. |++|....-
T Consensus 267 ~rYe~Am~~m~ 277 (518)
T KOG1941|consen 267 RRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHh
Confidence 9 999876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.1e-05 Score=73.24 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=84.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
-|.+|-..|-.+-|.-.|.++|.++|+. +++++.||..+...|+|+.|.+.|..
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~P~m--------------------------~~vfNyLG~Yl~~a~~fdaa~eaFds 124 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIRPDM--------------------------PEVFNYLGIYLTQAGNFDAAYEAFDS 124 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcCCCc--------------------------HHHHHHHHHHHHhcccchHHHHHhhh
Confidence 3567888888888888899888886653 45899999999999999999999999
Q ss_pred HHHcCCCCHHHH-HHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 175 ALSLESDKNKQC-NLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 175 ALeLdPdna~a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+++||.+.-+. |.|..+.--|++.-|.. +.+-.+.+|+++.
T Consensus 125 ~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 125 VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999998654 58999999999999999 9999999999875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0005 Score=67.45 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|=.+-|..-|.+++.+.|+-+++++-||.-|...|+|+.|.+.|...++++|..-.+.++.+++ +.--||+.-|...
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~--~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA--LYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee--eeecCchHhhHHH
Confidence 34445555555566666666666666666666666666666666666666666554444444332 2224556555555
Q ss_pred HHHHHHhchhHH-----------hcCCCchHH-----HHh--------------hchh--------H------HHhhhhh
Q 011721 112 LKRKLKKTEEVI-----------ACGGKSTKI-----ARS--------------QGRK--------T------QITLVQE 147 (479)
Q Consensus 112 lekALkl~p~~l-----------a~~~k~~~~-----A~~--------------~g~k--------~------~l~L~pe 147 (479)
|.+-...+|+.. .++++.... +.. .|+. . .-.+...
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHH
Confidence 555444443321 001100000 000 0000 0 0111222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
-.++++.||.-|..+|+.++|...|+-|+.-+--+
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 34788999999999999999999999888766544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.9e-05 Score=54.92 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+|++||+++|+++.+++ ||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 48999999999999888 9999999999999963
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=75.63 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=120.8
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH----HCCChHHHHHHHHHH
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRVDSALKDMAVVMK----QLDRSEEAIEAIKSF 79 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~----~~GrydEAie~leka 79 (479)
-+|+...+...|-...+.++.+..++..++.++|...+++||. +++...+-..|+=.+|. .-|.-+.-.+.|++|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3688888999998888998888888889999999999999997 66654433333333332 234556666788888
Q ss_pred HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 80 RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 80 l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.+.+.. ...+..|..+|.+.+++++|.++|+..++-..+. ..+|..+|..+
T Consensus 1524 cqycd~---~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------------------------~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1524 CQYCDA---YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------------------------RKVWIMYADFL 1574 (1710)
T ss_pred HHhcch---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------------------------hhHHHHHHHHH
Confidence 887642 2344556789999999999999999988864321 12555556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 160 LQQNDYESAERYYMKALSLESD--KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPd--na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+.+.+-++|-..+.+||.--|. +..... .|.+-++.|+.+.+.. +.-.|...|.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 6666666666666666666665 233333 5555555666666665 4444555554
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.4e-05 Score=73.83 Aligned_cols=89 Identities=22% Similarity=0.203 Sum_probs=77.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
+.|..-.+|+.||.+|-+||.++|.+.. ++.|.+.+|+++.+++.+....++|+
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~--------------------------Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVAS--------------------------YYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcch--------------------------hhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 3455567888999999999988766543 88999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+++|+...+.. ||.+++....|++|+. +.+|..+.
T Consensus 72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999997765 9999999999999999 88886554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00031 Score=64.03 Aligned_cols=94 Identities=21% Similarity=0.144 Sum_probs=79.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+......|+.+.|++.|.++|.+.|+ .+.+|+|.+.+|.-+|+.++|+..+.+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~--------------------------raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE--------------------------RASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc--------------------------chHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 35567889999999999999998554 3459999999999999999999999999
Q ss_pred HHcCCCCHH----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 176 LSLESDKNK----QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 176 LeLdPdna~----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+++.-+... ++. -|.+|..+|+-+.|.. +..|.++....+
T Consensus 104 leLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 104 LELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 999766542 344 8999999999999999 999888876543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0075 Score=59.82 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC--cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAIN----AGDR--VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~----l~p~--~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l 91 (479)
|++++.++-..++...|=..|.+|-. .+.+ ....|...+.+|.. ++..+|+.++++++.+.-+-.. +..
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~ 115 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKH 115 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 34444444445555555555555433 2222 12233344444433 3677777777776666543221 112
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 92 DNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 92 ~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
..-++.+|..- .++++||.+|++|-+-+..... ... ....+.-.+..-.++++|.+|+.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ss-----------ANKC~lKvA~yaa~leqY~~Ai~ 175 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSS-----------ANKCLLKVAQYAAQLEQYSKAID 175 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhh-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345666544 6667777777766655322110 000 01244555666778899999999
Q ss_pred HHHHHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 171 YYMKALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 171 ~yrKALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.|+++..-.-+++ +.+. -|.|++...+.-.+.. +.+-..++|....
T Consensus 176 iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 176 IYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 9999998877775 2233 6889888787777777 8888889997644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0042 Score=67.32 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=110.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH--------H--H--HCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVV--------M--K--QLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~v--------L--~--~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..||-+.++.+++++.+ .++....+-.|..+ + . .....+.|.+++...+...|+.+- +....|.+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l--fl~~~gR~ 276 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL--FLFFEGRL 276 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHH
Confidence 35899999999999987 33322222221111 1 1 356788899999999999998653 33345689
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
+...|+.++|++.|++++....... +-..-.++.+|+++..+++|++|..+|.+.++.
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~----------------------Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWK----------------------QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHH----------------------hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 9999999999999999985422110 001137899999999999999999999999998
Q ss_pred CCCCHHHHH--HHHHHHHcCCH-------HHHHH-HHHH
Q 011721 179 ESDKNKQCN--LAICLIRLNRI-------AEAKS-LLQA 207 (479)
Q Consensus 179 dPdna~a~n--LG~~L~~lGr~-------dEAi~-l~kA 207 (479)
+.-....|. .|.||...|+. ++|.. +.++
T Consensus 335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 776655443 89999999999 66666 4443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=7.5e-05 Score=51.90 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHH
Q 011721 41 LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE 74 (479)
Q Consensus 41 ~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie 74 (479)
+|++||+++|++..++++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999974
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0086 Score=60.30 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC----CC
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG----GK 128 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~----~k 128 (479)
..|...++..+..-++.++=+..+.+.+...-..........-+.+|..-|++++|+..+.+...+.-..+... ..
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34566677777777777777766655554433333322233345889999999999999988555532221100 00
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+.+.|....++ ...-++...+..||.++.. -+++.+|.-+|+.--+--|-++...+ ++.|.+.+|+|+||..
T Consensus 152 r~d~A~~~lk~---mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 152 RFDLAEKELKK---MQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHH---HHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 11111111111 1111233456667666554 35799999999999997777788888 9999999999999999
Q ss_pred -HHHHHHhcCCCcc
Q 011721 204 -LLQAVRASSRNEK 216 (479)
Q Consensus 204 -l~kAL~l~P~n~~ 216 (479)
++.+|..+++++.
T Consensus 229 lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 229 LLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHhccCCCHH
Confidence 8889999988765
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00023 Score=48.20 Aligned_cols=33 Identities=42% Similarity=0.526 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478999999999999999999999999999964
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.029 Score=56.19 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=107.5
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.-+++-|....+.|++++|+..|+.+....|..+.. ...+.++-.+.+.|++++|+..+++-++++|....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------ 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------ 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------
Confidence 35668889999999999999999999999999986532 22334567899999999999999999999887432
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCH---HH-------------H
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQ--------NDYESAERYYMKALSLESDKN---KQ-------------C 186 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l--------GdydeA~~~yrKALeLdPdna---~a-------------~ 186 (479)
..-+++..|.++... .-..+|+..|+..+..-|+.. ++ +
T Consensus 107 -----------------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 107 -----------------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred -----------------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 223666666665543 345688899999999999872 11 2
Q ss_pred H--HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 187 N--LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 187 n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
. +|..|.+.|.+-.|+. +...++.-|+-
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2 7899999999999999 77777765543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.051 Score=62.11 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHH-HHHHHcCCCCHH-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 157 WAYLQQNDYESAERYY-MKALSLESDKNK-QCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 157 ~ay~~lGdydeA~~~y-rKALeLdPdna~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.++..+|+|++|...+ ..-.+..+.-+. .-+ -...+..++++.+-.+ ..+.+..++++
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 5778899999999999 444444544433 334 4556666677777777 56666666665
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=64.90 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhc-CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIAC-GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~-~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
|+-+.++|+|.+|+..|+.|+..-.....- .+.. ..=++++.-....+.|...+++..|+|=+++++.-.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e---------~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGE---------PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCC---------hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 456778999999999999999874433210 0000 000344444556889999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+|..+|+|..+|. -|.+....-+.+||.. +.++|+++|.-
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999998 9999999999999999 99999999964
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0094 Score=62.22 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=105.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH--------------HHhcCCChHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF--------------RCLCADDSQESL 91 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka--------------l~l~P~da~~~l 91 (479)
++.++.-|||++|+..|..+...++-......+||.++.-+|.|.||..+-.++ .+++.+.-...+
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 355677899999999999988876666777889999999999999999865542 111111000000
Q ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 92 ----------DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 92 ----------~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
.+.|+.+....-.|.+||+.|.++|.-+|+.++ .-.+++.+|++
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a--------------------------lNVy~ALCyyK 197 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA--------------------------LNVYMALCYYK 197 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--------------------------hHHHHHHHHHh
Confidence 011223333344566666666666665554433 44778999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc--CCHHHHHH
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRL--NRIAEAKS 203 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l--Gr~dEAi~ 203 (479)
+.=|+-+.+.+.--|...||...+.| ++-.+..+ |+..++..
T Consensus 198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 99999999999999999999999988 55555544 66555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0055 Score=61.77 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=100.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHc
Q 011721 28 AQLVEKDPSRAISLFWAAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC----ADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p-~~~~Al~~LA~vL~~~GrydEAie~lekal~l~----P~da~~~l~~aLg~lY~kl 102 (479)
+.+..|.|.-.+..+.+.|+.+| ..+.....||.+-.+.|+.+.|..+|+..-+.+ .-.....+....+.+|.-+
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~ 265 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ 265 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc
Confidence 45566788888999999999774 445556789999999999999999999654332 2222222333344678888
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
+++.+|...|.+.+..++.. +.+-++-|.+++-+|+..+|++..+.++.+.|..
T Consensus 266 nn~a~a~r~~~~i~~~D~~~--------------------------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 266 NNFAEAHRFFTEILRMDPRN--------------------------AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred cchHHHHHHHhhccccCCCc--------------------------hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999998888875543 3467888999999999999999999999999987
Q ss_pred H
Q 011721 183 N 183 (479)
Q Consensus 183 a 183 (479)
.
T Consensus 320 ~ 320 (366)
T KOG2796|consen 320 Y 320 (366)
T ss_pred c
Confidence 5
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=53.06 Aligned_cols=59 Identities=31% Similarity=0.276 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
..++..++.++...|++++|+..+++++.++|-+...+. |-.+|..+|+..+|+. |.+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 357788999999999999999999999999999998887 9999999999999999 6554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0093 Score=64.48 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--------------
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD-------------- 86 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d-------------- 86 (479)
|--..++....+.++..-+++.++||+++|+.++||..||.- ...-..||+++|+++++.....
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 444455667789999999999999999999999888665532 2344678888888877643211
Q ss_pred ---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHH
Q 011721 87 ---------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAW 157 (479)
Q Consensus 87 ---------a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ 157 (479)
+.......|+.+..++|+.+||+++|+..++.+|... .-.++.+|-.
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~------------------------~l~IrenLie 303 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD------------------------NLNIRENLIE 303 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc------------------------hhhHHHHHHH
Confidence 0011222344556666666666666666665544211 0125566666
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 011721 158 AYLQQNDYESAERYYMKA 175 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKA 175 (479)
+|+.++.|.++...+.|-
T Consensus 304 ~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHhcCCHHHHHHHHHHh
Confidence 666666666666666654
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.034 Score=56.80 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLK 113 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~le 113 (479)
.++.++..|-.-+- +...+.-+..+.-+...|++.+|...|..++...|++.+..+ .++.+|...|+.+.|...|.
T Consensus 117 qPesqlr~~ld~~~--~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~--~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 117 QPESQLRQFLDKVL--PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKL--LLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred CcHHHHHHHHHHhc--ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHH--HHHHHHHHcCChHHHHHHHH
Confidence 35555554433222 222334455677788999999999999999999999876554 45689999999999888776
Q ss_pred HHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 114 RKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA--WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 114 kALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG--~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
..=.-... ..+....+ ..+.+.....+ ...+++.+.-+|+|..+.. ||.
T Consensus 193 ~lP~~~~~---------------------------~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~ 244 (304)
T COG3118 193 ALPLQAQD---------------------------KAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALAD 244 (304)
T ss_pred hCcccchh---------------------------hHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHH
Confidence 32111000 00111011 11222222222 2346677888999997766 999
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 191 CLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.|...|+.++|.. +..-+..+-..
T Consensus 245 ~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 245 QLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999 77777766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0068 Score=68.96 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=105.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
.+..+++.+|+....+.++..|+...|...-|.++.++|+.++|..+++..-...+.| +..+ -.+-.+|..+|++++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tL-q~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTL-QFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHH-HHHHHHHHHHhhhhHH
Confidence 4567899999999999999999999888889999999999999997777665555553 2222 3355899999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHH
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCN 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~-a~n 187 (479)
..+|++++..+|. . +.++.+=++|.+-++|.+=.+.--+.-+..|.++- .|.
T Consensus 97 ~~~Ye~~~~~~P~-e--------------------------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 97 VHLYERANQKYPS-E--------------------------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHHHhhCCc-H--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 9999999999887 2 14445555666666666554444444456777763 345
Q ss_pred -HHHHHHHcCCHHHHHH
Q 011721 188 -LAICLIRLNRIAEAKS 203 (479)
Q Consensus 188 -LG~~L~~lGr~dEAi~ 203 (479)
+..++...-..+++..
T Consensus 150 V~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 150 VISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHhccCCccccc
Confidence 5655555544444433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00092 Score=66.25 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=57.8
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
|.-|....+|+.||.+|-+++.++|..+...-+ -+.+|.+..+++.+....++|+.+.|+..
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tn--ralchlk~~~~~~v~~dcrralql~~N~v---------------- 78 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTN--RALCHLKLKHWEPVEEDCRRALQLDPNLV---------------- 78 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhh--HHHHHHHhhhhhhhhhhHHHHHhcChHHH----------------
Confidence 344445555666666666666666654322222 23456666666666666666666644432
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+++.||.++++...|++|+..+.+|..+
T Consensus 79 ----------k~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 79 ----------KAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred ----------HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 37788888999999999999999998765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=63.16 Aligned_cols=141 Identities=18% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKT 140 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~ 140 (479)
.---+..+...-|++-++|++++|+-+.+++.++ -....-..+|+.+|++|++.......... ....++...
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLA----EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~----~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLA----EEEASTIVEAEELLRQAVKAGEASLGKSQ----FLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc----cccccCHHHHHHHHHHHHHHHHHhhchhh----hhhcccchh
Confidence 3345677888888899999999998766543221 22355679999999999998655432110 000011100
Q ss_pred HHhhh-hh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-H--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 141 QITLV-QE--LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK-N--KQCNLAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 141 ~l~L~-pe--~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn-a--~a~nLG~~L~~lGr~dEAi~l~kAL~ 209 (479)
..... +- ...+-..||++..++|+.+||++.|+..++..|.. . ..+||..+|+.+++|.++..++....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 00000 11 12355789999999999999999999999988763 3 23459999999999999999554443
|
The molecular function of this protein is uncertain. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.11 Score=54.99 Aligned_cols=175 Identities=17% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCCcHHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 16 PAGDSPYVRAK--RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 16 p~~~~pyv~a~--~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
.+.+-|.++.. +..+.+|+++.|..-|+..+.....-.-.+..|-.--..+|.++.|+.+-+.+-...|.-+.+..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~-- 192 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR-- 192 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH--
Confidence 34455766543 55688999999999997665432221122333333446789999999999999999998654332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhch--hHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTE--EVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p--~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
++..-....|+++.|+..........- ...+ +....-.+.--+..+.. -+...|...
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a--------------------eR~rAvLLtAkA~s~ld-adp~~Ar~~ 251 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA--------------------ERSRAVLLTAKAMSLLD-ADPASARDD 251 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH--------------------HHHHHHHHHHHHHHHhc-CChHHHHHH
Confidence 333567789999999999887665410 0000 00000111111222221 235556666
Q ss_pred HHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 172 YMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 172 yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
-..++++.|+...+-. -+..|+..|+..++-. ++.+-+.+|.
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 6666666666654433 5666666666666666 4555555553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.001 Score=44.65 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+++.+|.++..+|++++|++.|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.012 Score=60.27 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=113.5
Q ss_pred hhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH-------------
Q 011721 13 HKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSF------------- 79 (479)
Q Consensus 13 ~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~leka------------- 79 (479)
.+.|-+--..-..++.+....++..|..+|.+.-...|......+--+..+.+.+.+.+|+.....+
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqL 117 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQL 117 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455443344456677777889999999999988899988776666777788888888887654322
Q ss_pred ---HHh--------------cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHH
Q 011721 80 ---RCL--------------CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQI 142 (479)
Q Consensus 80 ---l~l--------------~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l 142 (479)
+.. -|....+...+..|.+..+.|++++|+.-|+.|++.. |-
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-------Gy-------------- 176 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-------GY-------------- 176 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc-------CC--------------
Confidence 211 1211111111223567788899999999999988761 10
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-------------------------HHHHH-HHHHH
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL----ESDK-------------------------NKQCN-LAICL 192 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL----dPdn-------------------------a~a~n-LG~~L 192 (479)
.+-+-++++.++++.|+|+.|+++....++. .|.. ..++| .+.++
T Consensus 177 -----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 177 -----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred -----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 1125589999999999999999999888875 2322 13456 67788
Q ss_pred HHcCCHHHHHH
Q 011721 193 IRLNRIAEAKS 203 (479)
Q Consensus 193 ~~lGr~dEAi~ 203 (479)
.+.|+++.|.+
T Consensus 252 yq~~n~eAA~e 262 (459)
T KOG4340|consen 252 YQLRNYEAAQE 262 (459)
T ss_pred hhcccHHHHHH
Confidence 88888888876
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.047 Score=58.97 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=146.5
Q ss_pred chHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 4 KDEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 4 ~~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
|+.++++-+++.--+-...++.++-...++++..|...|++||..+-.+...+...+..-.......-|..++.+++.+-
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 56677777777766555666666667788999999999999999888888888888999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC--------CchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG--------KSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~--------k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
|.-.+.++-+. .+-..+|+...|...|++=+...|...+... +.-+.|+..+.++ +-..| ....+...
T Consensus 138 PRVdqlWyKY~--ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP-~v~~wiky 213 (677)
T KOG1915|consen 138 PRVDQLWYKYI--YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHP-KVSNWIKY 213 (677)
T ss_pred chHHHHHHHHH--HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecc-cHHHHHHH
Confidence 98655444332 3345789999999999999988876433211 1111232222221 11122 22456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 156 AWAYLQQNDYESAERYYMKALSLESDKNKQ---CN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 156 G~ay~~lGdydeA~~~yrKALeLdPdna~a---~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+..-...|+..-|...|++|++.-.++-.. ++ .|..-..+..++.|.. +.-||..-|.+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 777788899999999999999876665422 23 4555555677888888 66678777764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=47.85 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
.++..+|.+|...|++++|++.|+++++.+|+++....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 46788999999999999999999999999999876544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.022 Score=55.04 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH
Q 011721 71 EAIEAIKSFRCLCADDSQESLD-NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 71 EAie~lekal~l~P~da~~~l~-~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
+.+...+++...++......+. +.++..+...|++++|+..++.++..-.+..- ..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l-----------------------k~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL-----------------------KA 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH-----------------------HH
Confidence 5555666666677665544332 33567889999999999999998865211000 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN--LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
-+-.+||.+..++|.+|+|+..+.... +++...... .|.+|+.+|+-++|+. |.+++..++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 144788999999999999998876543 233333333 7999999999999999 99999887543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0048 Score=61.62 Aligned_cols=106 Identities=14% Similarity=0.017 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--------cCCChH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCL--------CADDSQ--------ESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l--------~P~da~--------~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.++..-|.-+..+|+|.||+..|+.++.. .|.+++ ..+.+....|+...|+|-+++++....|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999887542 455542 11222234789999999999999999998
Q ss_pred hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 118 KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 118 l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
.+|.+ ..+|+..|.+....-+.++|.+.|.++|+++|.-...
T Consensus 259 ~~~~n--------------------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGN--------------------------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCch--------------------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 86554 3599999999999999999999999999999987644
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00077 Score=72.12 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-+..-+.|+.|+..|.+||+++|... .++.+.+.++...++|..|+.-+.+|++
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca--------------------------~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCA--------------------------IYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcce--------------------------eeechhhhhheeechhhhHHHHHHhhhh
Confidence 34456778888888888888755432 3566777889999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++|....+|. -|.+.+.++++.+|.. ++....+.|++..
T Consensus 67 ~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 67 LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence 9999999888 8999999999999999 8888999998766
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00097 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=51.16 Aligned_cols=95 Identities=23% Similarity=0.252 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--C------C--------------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAG--D------R--------------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~--p------~--------------~~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
+......++.+.++..+.+++.+- + . ...++..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 344456789999999999999731 1 1 12445568888999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~ 122 (479)
|-+-.. ...+..+|..+|++.+|+..|++......+-
T Consensus 93 P~~E~~--~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 93 PYDEEA--YRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp TT-HHH--HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 987544 3446689999999999999999998875443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.035 Score=59.89 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=118.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 29 QLVEKDPSRAISLFWAAINAGDR----VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~----~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+...|.+.+...|+.+|++-|. ++..+...|....++.+...|.+++-.++..+|.+--. .+.+.+-.+++.
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF---k~YIelElqL~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF---KGYIELELQLRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH---HHHHHHHHHHhh
Confidence 45678999999999999998775 55677788888999999999999999999999986422 233455667788
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
+|....+|++-|.-.|.. -.++...|.+-..+|+.+-|...|+-|+....-+..
T Consensus 453 fDRcRkLYEkfle~~Pe~--------------------------c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPEN--------------------------CYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHHHHHHHHhcChHh--------------------------hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 888888888877775554 347888888888889999999999888876544432
Q ss_pred HHH---HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 185 QCN---LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 185 a~n---LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.+. .-..-...|.++.|.. +.+.|...+.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 222 3334456788888888 7777776654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0042 Score=64.15 Aligned_cols=96 Identities=27% Similarity=0.226 Sum_probs=76.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|+-|.+..+|..|+..|.+.|+..-.... -++-.|+|.+.+.+.+|+|-.|+.-..+|
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~d----------------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPD----------------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCcc----------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888876211100 02247899999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+.++|.+..++. =|.|+.++.++++|.. +...+.++-+
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999888 8999999999999988 7777666544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.028 Score=58.95 Aligned_cols=137 Identities=19% Similarity=0.120 Sum_probs=101.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHHHhcC----CChHHHH---
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRCLCA----DDSQESL--- 91 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~------~Al~~LA~vL~~~GrydEAie~lekal~l~P----~da~~~l--- 91 (479)
.+.+++..+.++++++.|++|++...+.. ..+..||.++.+..++++|+-...++.++-. ++....+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 34566777889999999999998543322 3456799999999999999998888776633 2222111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 92 -DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 92 -~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
.+-++..|..+|+.-+|.++.++|.++ |..+|... -.+..+.-+|.||...|+.+.|..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~kl--------------al~~Gdra------~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKL--------------ALQHGDRA------LQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHH--------------HHHhCChH------HHHHHHHHHHHHHHhcccHhHHHH
Confidence 122457789999999999999999987 22233221 123466788999999999999999
Q ss_pred HHHHHHHcCCC
Q 011721 171 YYMKALSLESD 181 (479)
Q Consensus 171 ~yrKALeLdPd 181 (479)
-|+.|......
T Consensus 268 rYe~Am~~m~~ 278 (518)
T KOG1941|consen 268 RYEQAMGTMAS 278 (518)
T ss_pred HHHHHHHHHhh
Confidence 99999987543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=58.14 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ-LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~-~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
..+......+..+.|...|.+|++..+-....|...|.+-.. .++.+-|..+|+.+++..|.+...++.+ ++.+...
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y--~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY--LDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH--HHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHh
Confidence 333333344457777777777775544445566666666555 4444447777777777777765544332 2555666
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
|+.+.|..+|++++...+.... ...+|......-...|+.+.....++++.++-|++
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~-----------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQ-----------------------SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHH-----------------------CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHHhcCchhH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7777777777776665222110 01234444444455566666666666666666664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=57.01 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=102.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
..+..+++.+|...|..++...|....+...|+.+|...|++++|..+|..+ |.+....-.. + ...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~---------~-l~a 208 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH---------G-LQA 208 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH---------H-HHH
Confidence 3466799999999999999999999999999999999999999999888653 3322110000 0 112
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--KQ 185 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--~a 185 (479)
.++.+.++-..-+- .. ....+.-+|++.++-+.||..|...|++++|.+++-..+..+-+.. ..
T Consensus 209 ~i~ll~qaa~~~~~-~~-------------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 209 QIELLEQAAATPEI-QD-------------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred HHHHHHHHhcCCCH-HH-------------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 24444444333110 00 0011345788888999999999999999999999999998876654 33
Q ss_pred HH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 186 CN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 186 ~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.. |-.++...|.-+.+.. +.+.
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33 5556655553333333 4443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.1 Score=52.30 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=105.1
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-----CCh
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-----DDS 87 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-----~da 87 (479)
.+-|.++...+-..++|++|...+.+|++-..+ ...++-..|.++.....+.|+..+|+++..+.- +-+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 356777777777889999999999999863322 234566778888889999999999998766532 222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
...+.. +.=....-+.++|+..|++++.+..... .. .-..+.+...+.+|.+..+|++
T Consensus 111 AmaleK--Aak~lenv~Pd~AlqlYqralavve~~d-----r~---------------~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 111 AMALEK--AAKALENVKPDDALQLYQRALAVVEEDD-----RD---------------QMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHH--HHHHhhcCCHHHHHHHHHHHHHHHhccc-----hH---------------HHHHHHHHHhhhHhhhhHHhhH
Confidence 111111 1112345567777777777777633211 00 0112467778889999999999
Q ss_pred HHHHHHHHHHcCC----CCH--HHHH-HHHHHHHcCCHHHHHHHHH
Q 011721 168 AERYYMKALSLES----DKN--KQCN-LAICLIRLNRIAEAKSLLQ 206 (479)
Q Consensus 168 A~~~yrKALeLdP----dna--~a~n-LG~~L~~lGr~dEAi~l~k 206 (479)
|-..+.|-..+.- -+. ..+. +-.+|+...+|..|..+.+
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 9888887554421 111 2222 3445555568888888443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=45.82 Aligned_cols=29 Identities=48% Similarity=0.664 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
+|.+||.+|..+|+|++|+.+|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999977654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=60.32 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=89.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhHHhcCCCchHHHHhh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK-TEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl-~p~~la~~~k~~~~A~~~ 136 (479)
.-+.++...|++-+|.....+++...|.+.-+.- .--+++.-.|+.+.-...+++.+-. ++...
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~k--fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp------------- 172 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVK--FSHDAHFYNGNQIGKKNAIEKIIPKWNADLP------------- 172 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhh--hhhhHHHhccchhhhhhHHHHhccccCCCCc-------------
Confidence 3456667778888888778888888887632110 0115566677777777777666544 22111
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
=...+...++..+...|-|++|++.-++|++|+|.+.-+.+ ++.++.-.|+++|+.++..-
T Consensus 173 ----------~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 173 ----------CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ----------HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 11235567788899999999999999999999999998877 99999999999999995543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0017 Score=69.51 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=75.6
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
+......+.|+.|+..|.+++.++|+.+...-+.+ .++.+.+++..|+.-+.+|+++.|...
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa--~a~lK~e~~~~Al~Da~kaie~dP~~~---------------- 72 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRA--LAHLKVESFGGALHDALKAIELDPTYI---------------- 72 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhh--hhheeechhhhHHHHHHhhhhcCchhh----------------
Confidence 33444455556666666666666665443222222 345666666666666666666644432
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH--HHHcCCHHHHHH
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC--LIRLNRIAEAKS 203 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~--L~~lGr~dEAi~ 203 (479)
.+|+..|.+.+.++.+.+|...|++...+.|+++.+.. +..| ...+-.|+.|+.
T Consensus 73 ----------K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 73 ----------KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred ----------heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 37788899999999999999999999999999997754 4444 344445666655
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.099 Score=50.65 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+.+|..+.+.|++++|+..++.++...-+. .......-|+.+...+|.+|+|+..+...-.-.=
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--------------- 157 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--------------- 157 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---------------
Confidence 467888999999999999999888654432 2233444567888999999999887763222100
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.+..-...|.+|..+|+-++|...|++|++.+++.+
T Consensus 158 ------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 ------------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 012346679999999999999999999999996665
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.25 Score=53.69 Aligned_cols=192 Identities=17% Similarity=0.077 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHHHH---cCCC-------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-CChHHHHHHHHHH
Q 011721 29 QLVEKDPSRAISLFWAAIN---AGDR-------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-DDSQESLDNVLLE 97 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~---l~p~-------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-~da~~~l~~aLg~ 97 (479)
.+..+++.+|+.....+.. ..|. ....+..+|.-...-+.|+.|...|..+.++-. .+..+..+..++.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 3567999999988887765 3343 223455688888889999999999988877643 3455666666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.|.+.|+-+.--+.++ .+.|..- .....+. ....+++..|...+.++++.||...+++.|.
T Consensus 413 ~YL~~~~~ed~y~~ld---~i~p~nt-------~s~ssq~---------l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALD---LIGPLNT-------NSLSSQR---------LEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhccHHHHHHHHH---hcCCCCC-------CcchHHH---------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999887654333322 2222210 0000000 1124788889999999999999999999999
Q ss_pred cCCC-C-H--HH--HH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 178 LESD-K-N--KQ--CN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 178 LdPd-n-a--~a--~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
+... + . .+ +. ||.+....|+..|+.. ..-++.+..+-..+... + -...+++.+..+...+|.
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq-L----ws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ-L----WSSSILTDLYQALGEKGN 543 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH-H----HHHHHHHHHHHHhCcchh
Confidence 8621 1 1 11 23 8889999999999999 77788877654432111 1 112345555556555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.074 Score=56.33 Aligned_cols=156 Identities=19% Similarity=0.094 Sum_probs=125.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
.++-+.+.+.|+..|...-..++++.|+...+-..-+..|...|+..++-.+++.+.+.+|.-. ++.+|....
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-------ia~lY~~ar 306 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-------IALLYVRAR 306 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-------HHHHHHHhc
Confidence 3444556778999999999999999999888888888999999999999999999999998532 223455544
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
--+-++.-++++-++ .++.|++.+.....+.+-+.-|+|..|..--+.+..+.|...
T Consensus 307 ~gdta~dRlkRa~~L-----------------------~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 307 SGDTALDRLKRAKKL-----------------------ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES 363 (531)
T ss_pred CCCcHHHHHHHHHHH-----------------------HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh
Confidence 445566666666555 356788888999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHc-CCHHHHHH-HHHHHH
Q 011721 184 KQCNLAICLIRL-NRIAEAKS-LLQAVR 209 (479)
Q Consensus 184 ~a~nLG~~L~~l-Gr~dEAi~-l~kAL~ 209 (479)
.+..|+.+-... |+-.++.. +-+++.
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 666688877554 99999999 777776
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.021 Score=61.97 Aligned_cols=125 Identities=18% Similarity=-0.033 Sum_probs=97.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~deA 108 (479)
...+.+.|...+......-|+-.-.+...|.++...|+.++|++.|++++.....-.+. ....-++.++.-+++|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35678889999999999999988778889999999999999999999887533332222 2223356789999999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCC
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY-------ESAERYYMKALSLES 180 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy-------deA~~~yrKALeLdP 180 (479)
..+|.+.++...-.. .-+.+..|.+|...|+. ++|.++|+++-.+-.
T Consensus 325 ~~~f~~L~~~s~WSk-------------------------a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 325 AEYFLRLLKESKWSK-------------------------AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhccccHH-------------------------HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999888632211 12667889999999999 888888888876644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0023 Score=42.50 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++++|.+|..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 378999999999999999999999999999974
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.24 Score=49.41 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHC-CChHHHHHHHHHHHHhcCCChH-HH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQL-DRSEEAIEAIKSFRCLCADDSQ-ES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~-GrydEAie~lekal~l~P~da~-~~ 90 (479)
.+.|+.+... +...++.+|+..+.+||.+--+ .+.-+..+|.+|-.. .++++||.+|+++-+....+-. ..
T Consensus 74 at~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 3577777654 4566999999999999985322 122345788888664 9999999999998877655422 22
Q ss_pred HHHHH---HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 91 LDNVL---LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 91 l~~aL---g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
.+-++ +..-..+|+|.+||..|++.....-+... +.-...+.++.-|.+++-..+.-.
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L-------------------LKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL-------------------LKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-------------------HHhHHHHHHHHHHHHhHhcccHHH
Confidence 22221 23334456666666666665543111000 000112467788999999999999
Q ss_pred HHHHHHHHHHcCCCCHHH
Q 011721 168 AERYYMKALSLESDKNKQ 185 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a 185 (479)
|...+++-.+++|...+.
T Consensus 214 a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 214 AQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHhcCCccccc
Confidence 999999999999998754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.13 Score=57.27 Aligned_cols=230 Identities=16% Similarity=0.172 Sum_probs=147.6
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-AGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l~p~~-----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+++.|.++.... ..+-+.++++.+-+.-|..|+. .+|.. ...+..+|.+|-..|+.+.|..+|+++....=.
T Consensus 342 LRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 455565554442 3456678999999999999997 56652 345678999999999999999999999887533
Q ss_pred ChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhHHhcCCCchHHHHh----------------hc--hhHH--
Q 011721 86 DSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKT--EEVIACGGKSTKIARS----------------QG--RKTQ-- 141 (479)
Q Consensus 86 da~--~~l~~aLg~lY~klGr~deAie~lekALkl~--p~~la~~~k~~~~A~~----------------~g--~k~~-- 141 (479)
... +.+....+..=.+..+++.|+.+.++|...= |....+++.....++. .| ...+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 221 1122223456667888899999888888651 1112222211111111 11 0000
Q ss_pred ----HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHH--HHHHHHHcC--CHHHHHH-HHHHHHh
Q 011721 142 ----ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES--DKNKQCN--LAICLIRLN--RIAEAKS-LLQAVRA 210 (479)
Q Consensus 142 ----l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP--dna~a~n--LG~~L~~lG--r~dEAi~-l~kAL~l 210 (479)
+.|.--.+.+..|.|+.+....-+++|.+.|++.+.|-| .--+.++ |-.....-| +.+.|.. +++||..
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 344445567889999999999999999999999999964 3346676 555444444 7889999 8999998
Q ss_pred cCCCc-cch-H---HHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 211 SSRNE-KMD-E---SYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 211 ~P~n~-~a~-~---~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
.|... +-. . .+-..++.|..+++.++++..--+
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 88421 111 1 112344666666666666544333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.042 Score=55.50 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=77.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR-SKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k-lGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
|..+.....+.+..+.|..+|.+++...+-..+.++.. +.+-.. .++.+.|...|+.+++.+|...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~--A~~E~~~~~d~~~A~~Ife~glk~f~~~~----------- 70 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY--ALMEYYCNKDPKRARKIFERGLKKFPSDP----------- 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH--HHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----------
Confidence 44555666666668888888888874433333333333 334333 4555558888888887755432
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.++......+...|+.+.|...|++++..-|... ..|. ....-...|+.+.... ..++..
T Consensus 71 ---------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 71 ---------------DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2555555666777888888888888887766654 2444 5555556676666666 445555
Q ss_pred hcCC
Q 011721 210 ASSR 213 (479)
Q Consensus 210 l~P~ 213 (479)
..|+
T Consensus 136 ~~~~ 139 (280)
T PF05843_consen 136 LFPE 139 (280)
T ss_dssp HTTT
T ss_pred Hhhh
Confidence 5554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.057 Score=54.10 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
+.|..-+..|....+|++|..++.++.+-..++.. +...-..+.+...+..+.|+..+|++|..++-+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs----- 106 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS----- 106 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----
Confidence 34555678889999999999999998865444321 111112345677888899999999999988644221
Q ss_pred hHHHHhhchhHHHhhhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHH
Q 011721 130 TKIARSQGRKTQITLVQELS-RISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~-~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEA 201 (479)
|+.+ .++-.-| =....-+.++|+.+|++++++--... +.+- ++.+|....+|+||
T Consensus 107 ----------------pdtAAmaleKAa-k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 107 ----------------PDTAAMALEKAA-KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred ----------------cchHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 1111 1222222 24567889999999999999744432 2234 88999999999999
Q ss_pred HH-HHHH
Q 011721 202 KS-LLQA 207 (479)
Q Consensus 202 i~-l~kA 207 (479)
-. +++-
T Consensus 170 a~a~lKe 176 (308)
T KOG1585|consen 170 ATAFLKE 176 (308)
T ss_pred HHHHHHh
Confidence 98 6653
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0039 Score=38.92 Aligned_cols=33 Identities=42% Similarity=0.623 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 367899999999999999999999999998864
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.16 Score=51.39 Aligned_cols=145 Identities=14% Similarity=0.041 Sum_probs=95.7
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-hcCC
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-ACGG 127 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l-a~~~ 127 (479)
.....+..++.+....|+++-|..++.++...++... ...+....+.+.-..|+..+|+..++..+....... ....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456778899999999999999999999888663211 112223345778889999999999999998322111 0000
Q ss_pred CchHH-HH----h--hchhHHHhhhhhHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHH
Q 011721 128 KSTKI-AR----S--QGRKTQITLVQELSRISGNLAWAYLQQ------NDYESAERYYMKALSLESDKNKQCN-LAICLI 193 (479)
Q Consensus 128 k~~~~-A~----~--~g~k~~l~L~pe~~~al~nLG~ay~~l------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~ 193 (479)
..... .. . .............+.++..+|.....+ +.+++++..|++|+.++|+...++. +|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 00000 00 0 000000011122346889999999888 9999999999999999999998776 887765
Q ss_pred Hc
Q 011721 194 RL 195 (479)
Q Consensus 194 ~l 195 (479)
..
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 54
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.16 Score=50.55 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 148 LSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 148 ~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
++.+.++||.+|.. ..++.+|..+|.+|.+... ...+. ++ ++...|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 34588999988764 3499999999999999988 54444 88 666666
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.17 Score=45.60 Aligned_cols=100 Identities=15% Similarity=-0.032 Sum_probs=57.5
Q ss_pred HHCCChHHHHHHHHHHHHhc---CC-Ch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 64 KQLDRSEEAIEAIKSFRCLC---AD-DS------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 64 ~~~GrydEAie~lekal~l~---P~-da------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+.|-|++|...++++.... |. .+ ++..+-.|...+..+|+|++++..-.++|........++....+
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk-- 97 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK-- 97 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH--
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch--
Confidence 34456666666666655442 21 11 12222335566777888888887777777764432221110000
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
-=..+.++.|.++..+|+.++|+..|+++-+.
T Consensus 98 -------------lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 98 -------------LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 01136799999999999999999999999764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.019 Score=48.59 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 39 ISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 39 i~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
+..+++++..+|++..+.+.+|..+...|++++|++.+..++..+++.........+..++..+|.-+.-...|++-|
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 567888999999999999999999999999999999999999998875332233344566666676555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.5 Score=56.71 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=123.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
-|.-+.-...|++|-+..+.+ ..|..|..+|..-+.+++|.++|+.+++..-+....+. .+++.+.++.+-+.|...
T Consensus 1510 yG~eesl~kVFeRAcqycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHH
Confidence 355556667888887765432 46788999999999999999999999998875443333 345778889999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
+.+||.-.|+. ++.++..--+.+-++.|+-+.+...|+-.|.-.|.--+.|+ +..
T Consensus 1587 L~rAL~~lPk~------------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1587 LKRALKSLPKQ------------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHhhcchh------------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 99999986652 22346667788888999999999999999999999999998 888
Q ss_pred HHHHcCCHHHHHH-HHHHHHhc
Q 011721 191 CLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 191 ~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.-+..|+.+.+.. |++++.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 8899999999999 88887654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0016 Score=67.35 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=75.8
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|.+++||+.|..||.++|.. +.+|...|.|++.+++...|++.|..|++|+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~--------------------------a~l~~kr~sv~lkl~kp~~airD~d~A~ein 178 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPL--------------------------AILYAKRASVFLKLKKPNAAIRDCDFAIEIN 178 (377)
T ss_pred hcCcchhhhhcccccccccCCch--------------------------hhhcccccceeeeccCCchhhhhhhhhhccC
Confidence 35678888888888888876543 3477888999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
||.+..|. -|.+...+|++++|.. +..+++++-+
T Consensus 179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99998887 8999999999999999 8888887643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.53 Score=52.73 Aligned_cols=222 Identities=14% Similarity=0.046 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----------ChH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----------DSQ 88 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p----~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~----------da~ 88 (479)
+..+..+-..|+.+.|...|.+|++.+- +.+..+.+-|..-.+..+++.|..+++.+...--. .++
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 3455677888999999999999998542 34567778888888999999999999987654111 123
Q ss_pred HHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhc---hhHHh----cCCCc--hHHHHhhchhHHHhh--hhhHHHH
Q 011721 89 ESLDNV------LLELYKRSKRIEEEIELLKRKLKKT---EEVIA----CGGKS--TKIARSQGRKTQITL--VQELSRI 151 (479)
Q Consensus 89 ~~l~~a------Lg~lY~klGr~deAie~lekALkl~---p~~la----~~~k~--~~~A~~~g~k~~l~L--~pe~~~a 151 (479)
..+... ++++-...|-++.-...|++.|.+. |+.+. +...+ ...+...+.+. +.| -|...++
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErg-I~LFk~p~v~di 549 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERG-ISLFKWPNVYDI 549 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcC-CccCCCccHHHH
Confidence 333322 3466777888888888888888773 33221 00000 01111111110 122 2333455
Q ss_pred HHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHH--HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHH
Q 011721 152 SGNL---AWAYLQQNDYESAERYYMKALSLESDKN-KQCN--LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKS 224 (479)
Q Consensus 152 l~nL---G~ay~~lGdydeA~~~yrKALeLdPdna-~a~n--LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~ 224 (479)
|+.. ...-+.--+.+-|...|++||+.-|-.. .... .|..--+-|-...|+. +.+|-..-+. +...+.+-..
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~-a~~l~myni~ 628 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE-AQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 5332 3334455688999999999999888322 3322 3444445588888888 7776433221 1112333345
Q ss_pred HHHHHHHHH------HHHhhhhcCCCCh
Q 011721 225 FEHASLMLT------ELESQSMLQPTDY 246 (479)
Q Consensus 225 ~~rA~eaL~------el~~a~~~~P~~~ 246 (479)
..+|.+++. .+++++..-|++-
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 566766652 4455666666533
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.008 Score=40.47 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+++.+|.+|..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788888888888888888887777774
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.31 Score=51.66 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=100.3
Q ss_pred HcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH--
Q 011721 31 VEKDPSRAISLFWAAINA----GDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRCL-CADDSQESLDNVLLELYK-- 100 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l----~p~~~~Al~~LA~vL~~---~GrydEAie~lekal~l-~P~da~~~l~~aLg~lY~-- 100 (479)
.-+||+.-+.+.+..-.+ -.+........|.+|.+ .|+.++|+..+..++.. .+.+++.. ..+|.+|.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~--gL~GRIyKD~ 230 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL--GLLGRIYKDL 230 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH--HHHHHHHHHH
Confidence 336777777777654333 12233445678899988 99999999999985544 44444432 22343433
Q ss_pred --H-----cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 101 --R-----SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 101 --k-----lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
. ....++|+..|.++.++.|..- .-.|++.++...|.-.+.....+
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---------------------------~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYY---------------------------SGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCcccc---------------------------chHHHHHHHHHcCCcccchHHHH
Confidence 3 2347888888888888865311 01233333333333222222222
Q ss_pred HHH-----------HcCCCCHHHH--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhh
Q 011721 174 KAL-----------SLESDKNKQC--N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 174 KAL-----------eLdPdna~a~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
+.. .+++. .+.| - ++.+..-.|++++|+. +.+++.+.|..-. +++.-+-..++.++.+.
T Consensus 284 ~i~~~l~~llg~kg~~~~~-~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~-----l~St~~ni~Li~~~~~~ 357 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKM-QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE-----LESTLENIKLIRHFRKR 357 (374)
T ss_pred HHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh-----HHHHHHHHHHHHHHhcC
Confidence 211 01122 2222 2 7778888999999999 8889998876432 34445556666666654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.16 Score=58.02 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------CCCCHHHH-HHHHHHHHcCCHHHHHH-HHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL---------------------ESDKNKQC-NLAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL---------------------dPdna~a~-nLG~~L~~lGr~dEAi~-l~k 206 (479)
..|.--|..+...|+.+.|+.+|..|-.- ...+-.++ +||.-|-..|++-+|+. +.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 46667788888899999999999876442 23333444 49999999999999998 554
Q ss_pred H
Q 011721 207 A 207 (479)
Q Consensus 207 A 207 (479)
|
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.018 Score=62.16 Aligned_cols=155 Identities=17% Similarity=0.044 Sum_probs=106.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHHhcCC------ChHHHHHHHHHHHHHHc
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRCLCAD------DSQESLDNVLLELYKRS 102 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~l~P~------da~~~l~~aLg~lY~kl 102 (479)
+...+...+....+-++....+.+.++...+..+.-.|+|..|.+.+.. -+...|. -..-.+++.||.++.+.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~ 296 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL 296 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh
Confidence 3334555555555555666667777888889999999999999998754 2333333 11122334577889999
Q ss_pred CCHHHHHHHHHHHHH-hchhHH-hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 103 KRIEEEIELLKRKLK-KTEEVI-ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 103 Gr~deAie~lekALk-l~p~~l-a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
|.|.-++.+|.+||+ ...... ++.+... ..+... ..-++++|.|..|+..|+.-.|.++|.+|...--
T Consensus 297 ~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-~tls~n---------ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 297 GCYQASSVLFLKALRNSCSQLRNGLKPAKT-FTLSQN---------KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCcc-eehhcc---------cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 999999999999997 222211 1111000 000000 1125899999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHH
Q 011721 181 DKNKQCN-LAICLIR 194 (479)
Q Consensus 181 dna~a~n-LG~~L~~ 194 (479)
.+|..|. ||.|.+.
T Consensus 367 ~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIM 381 (696)
T ss_pred cCcHHHHHHHHHHHH
Confidence 9998888 9988864
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.19 Score=53.13 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhchhHHhc
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNVLLELYKR---SKRIEEEIELLKRKLKKTEEVIAC 125 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~aLg~lY~k---lGr~deAie~lekALkl~p~~la~ 125 (479)
.+...+|=..|....+|+.-+...+.+-.+ -++.......+ +.++.+ .|+.++|+..+..++...
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y--afALnRrn~~gdre~Al~il~~~l~~~------ 212 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY--AFALNRRNKPGDREKALQILLPVLESD------ 212 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH--HHHHhhcccCCCHHHHHHHHHHHHhcc------
Confidence 355677888899999999999999887666 23333333333 344556 899999999999876542
Q ss_pred CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Q 011721 126 GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ---------QNDYESAERYYMKALSLESDKNKQCNLAICLIRLN 196 (479)
Q Consensus 126 ~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~---------lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lG 196 (479)
...+++.+..+|.+|-. ....++|+..|+++.+++|+.-...|++.++...|
T Consensus 213 -------------------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 213 -------------------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAG 273 (374)
T ss_pred -------------------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcC
Confidence 12233456666665543 23489999999999999998877888888888888
Q ss_pred CHHHHH
Q 011721 197 RIAEAK 202 (479)
Q Consensus 197 r~dEAi 202 (479)
.-.+..
T Consensus 274 ~~~~~~ 279 (374)
T PF13281_consen 274 HDFETS 279 (374)
T ss_pred Ccccch
Confidence 644443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.097 Score=54.59 Aligned_cols=159 Identities=10% Similarity=-0.097 Sum_probs=119.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-cCCChHH-HHHHHHHHHHHHcCCHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL-CADDSQE-SLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l-~P~da~~-~l~~aLg~lY~klGr~deA 108 (479)
..|++.+|.....+.++..|.+--++..--.++...|+.+.-...+++++-. +|+-+-. +++-.++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3456666667777888888888877777778899999999999999998877 6665432 2333345678899999999
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--H--
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN--K-- 184 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna--~-- 184 (479)
.+.-.+++.+++. +..+...++.++...|++.++.++..+.-..--+.- .
T Consensus 195 Ek~A~ralqiN~~--------------------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 195 EKQADRALQINRF--------------------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred HHHHHhhccCCCc--------------------------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 9999999998554 334667788899999999999999888765544322 1
Q ss_pred -HHHHHHHHHHcCCHHHHHH-HHHHH--HhcCCCc
Q 011721 185 -QCNLAICLIRLNRIAEAKS-LLQAV--RASSRNE 215 (479)
Q Consensus 185 -a~nLG~~L~~lGr~dEAi~-l~kAL--~l~P~n~ 215 (479)
.++-|.++++-+.|+.|+. |.+-+ .+..+++
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 2337899999999999999 76654 3455554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0091 Score=39.59 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+|++.+|.++...|++++|++.|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36788888888888888888888888888886
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.017 Score=44.47 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+.+|+++|+|..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 36788999999999999999999999999999987765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.2 Score=57.32 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHH----------HHHhcCCChH--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKS----------FRCLCADDSQ--------ESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lek----------al~l~P~da~--------~~l~~aLg~lY~klGr~deAie~lek 114 (479)
...|++.|.-|...++.+.|+++|++ ++..+|.... ..+....|..+...|..+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 35678888888888999999998886 3444554322 23334456667788999999999988
Q ss_pred HHHhchhHH--hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 115 KLKKTEEVI--ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 115 ALkl~p~~l--a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|-..+.... .+.++..+.|. |.-...+..+-+.||..|...|++.+|+.+|.+|-..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~-------iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAAR-------IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHH-------HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 877654321 22332222211 1222233458899999999999999999999988664
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.023 Score=48.11 Aligned_cols=49 Identities=27% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+..++++++.+|++..+.. ||.+++..|++++|+. ++..+..+++...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 46678899999999988776 9999999999999999 8888888887644
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0058 Score=63.34 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=74.0
Q ss_pred HHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKT 140 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~ 140 (479)
.-....|.+++||+.|..++.++|..+..+.. -+.++.++++...||..+..|+.++|+..
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~k--r~sv~lkl~kp~~airD~d~A~ein~Dsa----------------- 182 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAK--RASVFLKLKKPNAAIRDCDFAIEINPDSA----------------- 182 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhccc--ccceeeeccCCchhhhhhhhhhccCcccc-----------------
Confidence 33456788999999999999999986644333 24678889999999999999988866532
Q ss_pred HHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 141 QITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 141 ~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
.-|-..|.+...+|++++|...++.|++++-+-.
T Consensus 183 ---------~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 183 ---------KGYKFRGYAERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred ---------cccchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence 2445567888899999999999999999876543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.032 Score=61.40 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=77.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
...+|+...|+.++..|+...|.-... .+.+|+.++..-|..-+|-..+.++|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v-------------------------~~v~la~~~~~~~~~~da~~~l~q~l~~ 671 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDV-------------------------PLVNLANLLIHYGLHLDATKLLLQALAI 671 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcc-------------------------cHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 345788999999999999888764321 4578888888888888999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE 219 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~ 219 (479)
+-..+-.+. +|.+|+.+.+.+.|++ +.+|+.++|++.....
T Consensus 672 ~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 672 NSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 866665555 8999999999999999 8889999998877544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.016 Score=40.29 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777777777777777777775433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.018 Score=39.93 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.++.+||.+|..+|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47899999999999999999999999986
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.31 Score=47.65 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=72.0
Q ss_pred HHHCCChHHHHHHHHHHHHh----cCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 63 MKQLDRSEEAIEAIKSFRCL----CADD-SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l----~P~d-a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
+.....+++|++.|.-++-. ..++ ..+.+.+-++.+|..+|+.+....++++|+..+.+.........
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~------- 159 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI------- 159 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-------
Confidence 33455677777776654422 2222 12344445678999999999999999999998776543111000
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
-.-+...+++.+|.++++.|++++|+.+|.+++...-...
T Consensus 160 ------~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 160 ------EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred ------CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 0012234789999999999999999999999998754443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.11 Score=52.70 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+.||=.+|.+.++++.|+.+.+..+.++|+++.-+- .|.+|.++|.+..|.. +..-+...|+++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 67899999999999999999999999999999997666 9999999999999999 9999999998765
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.33 Score=47.45 Aligned_cols=93 Identities=26% Similarity=0.265 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH-------HHHHHHH
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES-------AERYYMK 174 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde-------A~~~yrK 174 (479)
.-.+++|++.|.-||-...... .+.. ..+.++..+||+|..+|+-++ |+..|++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~---~~~s----------------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~ 150 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKK---EKPS----------------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE 150 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC---CCHH----------------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 4467788888887776521100 0111 123477899999999999555 5555555
Q ss_pred HHHcCCC--CH----HH-HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011721 175 ALSLESD--KN----KQ-CNLAICLIRLNRIAEAKSLLQAVRASSR 213 (479)
Q Consensus 175 ALeLdPd--na----~a-~nLG~~L~~lGr~dEAi~l~kAL~l~P~ 213 (479)
|++.... .. .. |.+|.+...+|++++|+.+...+...++
T Consensus 151 a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 151 AYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 5544422 21 22 3399999999999999995444444444
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.9 Score=47.15 Aligned_cols=205 Identities=18% Similarity=0.105 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC------cHH--------HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--------HH
Q 011721 32 EKDPSRAISLFWAAINAGDR------VDS--------ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--------QE 89 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~------~~~--------Al~~LA~vL~~~GrydEAie~lekal~l~P~da--------~~ 89 (479)
.|=+++|.++-.++|..-.+ ... .+-.+..+-.-.|++.+|++.+..+...+-..+ ..
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 34566677766666653211 111 223455666778999999999888776543322 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.+...+|.....-|.++.|...|..|+++-....- -+.+-.|||.+|...|+-+.
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-----------------------~a~~nlnlAi~YL~~~~~ed-- 422 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-----------------------QAFCNLNLAISYLRIGDAED-- 422 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-----------------------HHHHHHhHHHHHHHhccHHH--
Confidence 34444554455678899999999999987322100 11255789999999877544
Q ss_pred HHHHHHHHcCCCCH----------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccch-------H---HHH----H
Q 011721 170 RYYMKALSLESDKN----------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMD-------E---SYA----K 223 (479)
Q Consensus 170 ~~yrKALeLdPdna----------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~-------~---~~~----k 223 (479)
+|+-.=.+.|.|. ..+. -|...+.++++.||.. +.+.+... |+... . ++. .
T Consensus 423 -~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslg 499 (629)
T KOG2300|consen 423 -LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLG 499 (629)
T ss_pred -HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhc
Confidence 4443344566641 2234 6888889999999999 77778766 22210 0 110 1
Q ss_pred HHHHHHHHHH---HHHhhhhcCCCChhhHHHHHhhhhhhhhcCCCCC
Q 011721 224 SFEHASLMLT---ELESQSMLQPTDYGEDKRKKILSSCTYINGSEEN 267 (479)
Q Consensus 224 ~~~rA~eaL~---el~~a~~~~P~~~~~~~~~~~~~~~~~i~~~~~~ 267 (479)
.-.++.+++. .+.+++.+-|. +. +..+|+....+-.|..|+
T Consensus 500 n~~es~nmvrpamqlAkKi~Di~v-qL--ws~si~~~L~~a~g~~~~ 543 (629)
T KOG2300|consen 500 NTVESRNMVRPAMQLAKKIPDIPV-QL--WSSSILTDLYQALGEKGN 543 (629)
T ss_pred chHHHHhccchHHHHHhcCCCchH-HH--HHHHHHHHHHHHhCcchh
Confidence 1123334433 33444433332 33 667778777776676555
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.033 Score=61.27 Aligned_cols=103 Identities=20% Similarity=0.129 Sum_probs=67.3
Q ss_pred HHHHHH-HHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhh
Q 011721 58 DMAVVM-KQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 58 ~LA~vL-~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~ 136 (479)
++|.+| ..+|+.-.|++++..++...|......+.+ |+.+..+.|...+|-..+.++|.+...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~~~s--------------- 674 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAINSS--------------- 674 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhhccc---------------
Confidence 444444 346777777777777777777654433322 456666777777777777777776311
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
.+-.++.+|.+|+.+.+.+.|+++|+.|+.++|+++..-+
T Consensus 675 -----------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 675 -----------EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred -----------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 1125566777777777777777777777777777776554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.86 Score=50.56 Aligned_cols=153 Identities=21% Similarity=0.100 Sum_probs=102.3
Q ss_pred cHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHh
Q 011721 20 SPYVRAKRAQL-----VEKDPSRAISLFWAAIN-------AGDRVDSALKDMAVVMKQLD-----RSEEAIEAIKSFRCL 82 (479)
Q Consensus 20 ~pyv~a~~~~L-----~~gd~eeAi~~y~kAL~-------l~p~~~~Al~~LA~vL~~~G-----rydEAie~lekal~l 82 (479)
.+....+.+++ ...|++.|+.+|..+.. .. +..+.+.||.+|.+.. +++.|+.+|.++-..
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 34445555544 23589999999999877 33 3457888999998854 678899999998888
Q ss_pred cCCChHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 83 CADDSQESLDNVLLELYKRSK---RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~klG---r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
...++... ++.+|..-. ++..|..+|..|... -...+.+++|.+|
T Consensus 323 g~~~a~~~----lg~~~~~g~~~~d~~~A~~yy~~Aa~~----------------------------G~~~A~~~la~~y 370 (552)
T KOG1550|consen 323 GNPDAQYL----LGVLYETGTKERDYRRAFEYYSLAAKA----------------------------GHILAIYRLALCY 370 (552)
T ss_pred CCchHHHH----HHHHHHcCCccccHHHHHHHHHHHHHc----------------------------CChHHHHHHHHHH
Confidence 76665433 445555444 456777777776654 1223677777766
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHc-CCHHHHHH-HHHHH
Q 011721 160 LQ----QNDYESAERYYMKALSLESDKNKQC-NLAICLIRL-NRIAEAKS-LLQAV 208 (479)
Q Consensus 160 ~~----lGdydeA~~~yrKALeLdPdna~a~-nLG~~L~~l-Gr~dEAi~-l~kAL 208 (479)
.. .-+...|..+|.+|.+.+ ++.+. .++.++..- ++++.+.. +....
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 53 358999999999999999 44333 244444332 77777776 44433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.5 Score=43.56 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=80.0
Q ss_pred hHHHHHHHhhCCCCCcHHHHHHHHHHHc---C---------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHH
Q 011721 5 DEELFHVIHKVPAGDSPYVRAKRAQLVE---K---------DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEA 72 (479)
Q Consensus 5 ~~~~~~~v~k~p~~~~pyv~a~~~~L~~---g---------d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEA 72 (479)
..++...+...|++....+.....+-.. + -.+.-+..|++||+.+|+....+..+-.+..+....++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566777888998877666554333211 1 135667899999999998887777666677788888888
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhchh
Q 011721 73 IEAIKSFRCLCADDSQESLDNVLLEL-YKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 73 ie~lekal~l~P~da~~~l~~aLg~l-Y~klGr~deAie~lekALkl~p~ 121 (479)
.+.+++++..+|++...+..+.-... -...-.+++....|.++|.....
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 89999999999987655433321111 12234578888888888876433
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.061 Score=55.43 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=57.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+.+.-....|+.++|...|+.|++++|++++++. +|...-..++.-+|-. |.+||.++|.|.++
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3444557889999999999999999999999988 9999988899999999 99999999998774
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.62 Score=49.06 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=98.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------------cCC-----------
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--------------CAD----------- 85 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--------------~P~----------- 85 (479)
...|++.-+.+ |...|-+.+++..++.++..+|++..|.+.+++++-. ++.
T Consensus 22 ~~~Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~ 97 (360)
T PF04910_consen 22 QSHDPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRP 97 (360)
T ss_pred HccCHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccc
Confidence 44566654443 4678999999999999999999999999999887532 111
Q ss_pred -ChHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHHHHHHHHc
Q 011721 86 -DSQESLD-NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNLAWAYLQQ 162 (479)
Q Consensus 86 -da~~~l~-~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nLG~ay~~l 162 (479)
|....+. ...+....+.|-+.-|.+..+-.+.++|.. |+ .+++.+-....+.
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-------------------------DP~g~ll~ID~~ALrs 152 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-------------------------DPLGVLLFIDYYALRS 152 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-------------------------CcchhHHHHHHHHHhc
Confidence 1111110 001255667888888888888777776651 11 2445555555666
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----H-HHHHHHHHHHHcCCH---------------HHHHH-HHHHHHhcCC
Q 011721 163 NDYESAERYYMKALSLESDK-----N-KQCNLAICLIRLNRI---------------AEAKS-LLQAVRASSR 213 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdn-----a-~a~nLG~~L~~lGr~---------------dEAi~-l~kAL~l~P~ 213 (479)
++|+=-+..++........+ | -++.++.++..+++- ++|.. +.+|+...|.
T Consensus 153 ~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 153 RQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77776666666655421111 1 234467777777776 77877 7778887774
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.33 Score=49.17 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.+.+++.+++++.|+......+..+|+++.-+...|.+|.+.|.+..|+.-|+..++.+|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556777788888888888888888777777778888888888888888888888888877654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=52.54 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=74.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 27 RAQLVEKDPSRAISLFWAAINA---GDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l---~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
.-++..++|..|+..|.+.|+. +|+.. ..|.|.|.+....|+|-.|+.-+.+++.++|.+.-+.+.- +.++..+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~--Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG--AKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh--hHHHHHH
Confidence 4456778899999999999983 44433 4467899999999999999999999999999987665543 3678888
Q ss_pred CCHHHHHHHHHHHHHhchh
Q 011721 103 KRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~ 121 (479)
.++++|....+..+.++.+
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
Confidence 9999999999988887543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.06 Score=33.23 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++..+|.++...|++++|+..|++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667777777777777777777777776664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.5 Score=48.98 Aligned_cols=204 Identities=13% Similarity=-0.005 Sum_probs=119.4
Q ss_pred cchHHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCC-------cHHHHHHHHHHHHHCCChHHHH
Q 011721 3 WKDEELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN-A-GDR-------VDSALKDMAVVMKQLDRSEEAI 73 (479)
Q Consensus 3 ~~~~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~-l-~p~-------~~~Al~~LA~vL~~~GrydEAi 73 (479)
|.+.....++.+.|.- .+.-......+.++++|..+..++-. + .|+ .....-..|.+....|++++|+
T Consensus 402 ~~~~lP~~~l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~ 478 (894)
T COG2909 402 WLKALPAELLASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAE 478 (894)
T ss_pred HHHhCCHHHHhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444455555555531 12223456678899999888877654 1 211 2233344688899999999999
Q ss_pred HHHHHHHHhcCCChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC------CCchHHHHhhc-------
Q 011721 74 EAIKSFRCLCADDSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG------GKSTKIARSQG------- 137 (479)
Q Consensus 74 e~lekal~l~P~da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~------~k~~~~A~~~g------- 137 (479)
+..+.++..-|.+.. ......++.+..-.|++++|..+...+.++........ .........+|
T Consensus 479 ~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 479 DLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999988887643 23334466888899999999999999998854321100 00000111122
Q ss_pred hhHHHhh-------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--HHH--HHHHHHHHHcCCHHHHH
Q 011721 138 RKTQITL-------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD----K--NKQ--CNLAICLIRLNRIAEAK 202 (479)
Q Consensus 138 ~k~~l~L-------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd----n--a~a--~nLG~~L~~lGr~dEAi 202 (479)
.+....+ .+-....+...+.++...-+++.+....++.+++.-. . ..+ ++|+.++...|++++|.
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 1110000 0110112222233333333388888888888887422 2 222 25899999999999999
Q ss_pred H-HHHHHH
Q 011721 203 S-LLQAVR 209 (479)
Q Consensus 203 ~-l~kAL~ 209 (479)
. +.+...
T Consensus 639 ~~l~~~~~ 646 (894)
T COG2909 639 AQLDELER 646 (894)
T ss_pred HHHHHHHH
Confidence 9 554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.53 Score=44.57 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..++..+|..|.+.|++++|++.|.++...+-.... ..+.+.++.+....|++.....++.+|-.+...+... .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~----~- 110 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW----E- 110 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH----H-
Confidence 467889999999999999999999998887654322 2223334577888999999999999888774331110 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
-...+-..-|..++..++|.+|-..|-.++.-..
T Consensus 111 ---------------~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 111 ---------------RRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred ---------------HHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 0012334557778888999999998887765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.46 E-value=2.1 Score=40.25 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVRASS 212 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P 212 (479)
|+.+++-..-|+++...|++.+|+..|+.+.+-.|..+.+-- |+.||..+|+.+==....+++...+
T Consensus 41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLESGA 108 (160)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcCC
Confidence 344445667788899999999999999999888888887766 8999988887532222334444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.32 Score=52.97 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---------cCCCC----------HHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALS---------LESDK----------NKQCNLAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALe---------LdPdn----------a~a~nLG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
+++|||.|++++|.|..+..+|.+||. +.|.. ...||+|..|+..|+.-+|.+ +.+++..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 569999999999999999999999996 12211 234779999999999999999 8899988
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 011721 211 SSRNEKMDESYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 211 ~P~n~~a~~~~~k~~~rA~eaL~el~~a~ 239 (479)
...|+. -.+.-|+-.+...++.+
T Consensus 365 fh~nPr------lWLRlAEcCima~~~~l 387 (696)
T KOG2471|consen 365 FHRNPR------LWLRLAECCIMALQKGL 387 (696)
T ss_pred HhcCcH------HHHHHHHHHHHHhhhhh
Confidence 777765 23445555555555543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.3 Score=44.89 Aligned_cols=155 Identities=20% Similarity=0.104 Sum_probs=110.0
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----CCC---------------cHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAIN---------A-----GDR---------------VDSAL 56 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~---------l-----~p~---------------~~~Al 56 (479)
..+.+++++.|=....++....+...+||.+.|..+.++||- - +.. .--++
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence 456677889998888999998999999999999998888863 1 111 11345
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH-HhcCCCchHHHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV-IACGGKSTKIAR 134 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~-da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~-la~~~k~~~~A~ 134 (479)
+.....+.+.|-+..|.+..+-++.++|. |+-..+. .+-..-.+.++|+-=+..++......... ..
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~---------- 175 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-FIDYYALRSRQYQWLIDFSESPLAKCYRNWLS---------- 175 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH-HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh----------
Confidence 56777889999999999999999999999 6643221 22233446677776666666544321110 00
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHcCCCCH
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDY---------------ESAERYYMKALSLESDKN 183 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy---------------deA~~~yrKALeLdPdna 183 (479)
. -+..-+.++.++..+++- ++|...+++|+..-|.-.
T Consensus 176 ---------~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 176 ---------L---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred ---------h---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 0 112557888889999888 999999999999888543
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.7 Score=43.81 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD----RVDSALKDMAVVMKQLDRSEEAIEAIKSFRC 81 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p----~~~~Al~~LA~vL~~~GrydEAie~lekal~ 81 (479)
.++....+....|.++.|...+.++...++ ..+...+..+.++...|+..+|+..++..+.
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555667788999999999999887542 1345677789999999999999999988777
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=4.7 Score=40.08 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=100.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----c
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----S 102 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~----GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----l 102 (479)
..+++..|...+.++-...+ ..+...++.+|... .+..+|+..|+.+... .++...+ .|+.+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~--~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g~~~a~~--~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD--AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--GLAEALF--NLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC--hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--ccHHHHH--hHHHHHhcCCCcc
Confidence 45688899999988776433 35777888888653 4578899999854433 3333332 24555554 3
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----C--CHHHHHHHHHHH
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----N--DYESAERYYMKA 175 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----G--dydeA~~~yrKA 175 (479)
.++.+|...|++|........ ..+.++||.+|..- - +...|+..|++|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-------------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-------------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 488999999998887621100 12356677766653 1 334899999999
Q ss_pred HHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 176 LSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
-... ++.+.. ||.+|.. ..++.+|.. +.+|.....
T Consensus 182 a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 182 AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9988 666665 9988865 348999999 888877664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.13 Score=35.47 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.++.+||.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777777777777777766554
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.2 Score=40.24 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=63.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCC--------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-------CCCh
Q 011721 27 RAQLVEKDPSRAISLFWAAINA----GDR--------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-------ADDS 87 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l----~p~--------~~~Al~~LA~vL~~~GrydEAie~lekal~l~-------P~da 87 (479)
.-++..+-|++|...+++|+.. .+. +.-.+..|+..+..+|+|++++..-..++... .+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 4568889999999999999973 221 22345679999999999999998877776543 3322
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 88 QESLD--NVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 88 ~~~l~--~aLg~lY~klGr~deAie~lekALkl 118 (479)
..++. ..-+..+..+|+.++|+..|+.+-++
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 21111 11235678899999999999999887
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.9 Score=47.90 Aligned_cols=141 Identities=20% Similarity=0.127 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----CChHHHHHHHHHHHH-------hcCCChHHHHHHHHHHHHHHc
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQL-----DRSEEAIEAIKSFRC-------LCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-----GrydEAie~lekal~-------l~P~da~~~l~~aLg~lY~kl 102 (479)
...|..+|+.+.+.+ +..+...+|.+|..- .+.+.|+.+|+.+.. .. ++. ..+.++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~--a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPP--AQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCc--cccHHHHHHhcC
Confidence 567899998887765 356777888887554 789999999988765 21 111 123466777764
Q ss_pred C-----CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 011721 103 K-----RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN---DYESAERYYMK 174 (479)
Q Consensus 103 G-----r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG---dydeA~~~yrK 174 (479)
. ++..|+.+|.++-.. .++.+.+.||.+|..-. ++..|..+|..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~----------------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL----------------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc----------------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 3 567788888777665 23357889999888665 67899999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHc----CCHHHHHH-HHHHHHhc
Q 011721 175 ALSLESDKNKQCN-LAICLIRL----NRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~l----Gr~dEAi~-l~kAL~l~ 211 (479)
|.... +..++. ||.||..- -+...|.. +.++....
T Consensus 354 Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 97653 455555 88887642 47899999 77887776
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.40 E-value=9.5 Score=39.29 Aligned_cols=212 Identities=19% Similarity=0.230 Sum_probs=119.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHH
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQESLDNVLLELY 99 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l-----~P~da~~~l~~aLg~lY 99 (479)
.+.+.++++|+.-|.+++.+.+.-. .|+..+-.+...+|+|++-.+.|.+++.. .-+..+-.++..| +.-
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il-Dyi 115 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL-DYI 115 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHH
Confidence 3566799999999999999766532 46778889999999999999999887643 1222233333322 111
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHH--hcC-CCchHHHHh-----hchhHH-------Hhh-----------hhhHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVI--ACG-GKSTKIARS-----QGRKTQ-------ITL-----------VQELSRISG 153 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~l--a~~-~k~~~~A~~-----~g~k~~-------l~L-----------~pe~~~al~ 153 (479)
....+.+--.+.|+-.|..-.++- .++ ....+.... .+.+.. .+. +..-.++|-
T Consensus 116 StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 116 STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 122223333334444433321110 000 000000000 000000 000 011124555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-HHHHH
Q 011721 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQC------N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-SYAKS 224 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~------n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-~~~k~ 224 (479)
.--.+|..+++...-...|++||.+...-|-.+ . =|..++..|+|++|.. +++|+...-+.+.... ..++.
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKY 275 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKY 275 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHH
Confidence 556788899999999999999999875544222 2 3556788899999999 9999986544333111 22333
Q ss_pred HHHHHHHHHHHHhhhhcCCCCh
Q 011721 225 FEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 225 ~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+ .|+.+..+...+|-|.
T Consensus 276 L-----VLANMLmkS~iNPFDs 292 (440)
T KOG1464|consen 276 L-----VLANMLMKSGINPFDS 292 (440)
T ss_pred H-----HHHHHHHHcCCCCCcc
Confidence 2 4455555666677554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.4 Score=46.03 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=78.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
.+..+..+|++.+....+.. .+-|.. ..-...++..|.++|-.+.|+..-+ |+...+ ++..++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF-----eLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRF-----ELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHH-----HHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHh-----HHHHhcCC
Confidence 35677889999977666421 111222 2235667888999999999988653 333333 34567888
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
++.|.+..+ ..+++..|..||.+.+.+|+++-|+++|+++- +
T Consensus 334 L~~A~~~a~-------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-------d 375 (443)
T PF04053_consen 334 LDIALEIAK-------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAK-------D 375 (443)
T ss_dssp HHHHHHHCC-------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------
T ss_pred HHHHHHHHH-------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------C
Confidence 888776532 12234589999999999999999999999973 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 011721 185 QCNLAICLIRLNRIAEAKSLL 205 (479)
Q Consensus 185 a~nLG~~L~~lGr~dEAi~l~ 205 (479)
.-.|..+|.-.|+.+.=..+.
T Consensus 376 ~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 376 FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHHHHCT-HHHHHHHH
T ss_pred ccccHHHHHHhCCHHHHHHHH
Confidence 222778888888864433333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.2 Score=50.74 Aligned_cols=183 Identities=17% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHc----CCCcH-HHHHHHHHHHHHCCChHHHHHHHHHH------HHhc
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWA------AINA----GDRVD-SALKDMAVVMKQLDRSEEAIEAIKSF------RCLC 83 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~k------AL~l----~p~~~-~Al~~LA~vL~~~GrydEAie~leka------l~l~ 83 (479)
-|-+++.++-.-.|+++|+++|++ ||++ .|... ..-...|.-+.+.|+++.|+..|-.+ ++..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 455677777778899999998875 3432 22111 11124577788999999998876432 1110
Q ss_pred ------CC-----------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH--HHHhhchhHHHhh
Q 011721 84 ------AD-----------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK--IARSQGRKTQITL 144 (479)
Q Consensus 84 ------P~-----------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~--~A~~~g~k~~l~L 144 (479)
|. .....++-.+++-|...|+|+-|.+.|.++-.... .+..+++... .|..+.. .-.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d-ai~my~k~~kw~da~kla~---e~~ 818 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKD-AIDMYGKAGKWEDAFKLAE---ECH 818 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHH-HHHHHhccccHHHHHHHHH---Hhc
Confidence 10 00011111234667788888888887776543321 1111111110 1111000 011
Q ss_pred hhhHH-HHHHHHHHHHHHcCCHHHHHHHHH------HHHH-----------------cCCCCH-HHHH-HHHHHHHcCCH
Q 011721 145 VQELS-RISGNLAWAYLQQNDYESAERYYM------KALS-----------------LESDKN-KQCN-LAICLIRLNRI 198 (479)
Q Consensus 145 ~pe~~-~al~nLG~ay~~lGdydeA~~~yr------KALe-----------------LdPdna-~a~n-LG~~L~~lGr~ 198 (479)
.|+.. ..|..-+.-+...|+|.+|++.|- +|+. -.|++- +... +|.-|-..|++
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 22222 223333444555555555554442 2221 134443 3344 88888889999
Q ss_pred HHHHH-HHHH
Q 011721 199 AEAKS-LLQA 207 (479)
Q Consensus 199 dEAi~-l~kA 207 (479)
.+|.. +++|
T Consensus 899 kaae~~flea 908 (1636)
T KOG3616|consen 899 KAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHhh
Confidence 99888 7765
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.36 Score=40.68 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
..+.|+|.+|++.+.+.+........... ......++.++|.++...|++++|+..+++|+.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-----------------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS-----------------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh-----------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678888888888888876333211000 0012247788999999999999999999999998
Q ss_pred CCCCHH
Q 011721 179 ESDKNK 184 (479)
Q Consensus 179 dPdna~ 184 (479)
.....+
T Consensus 71 Are~~D 76 (94)
T PF12862_consen 71 ARENGD 76 (94)
T ss_pred HHHHCC
Confidence 665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.98 E-value=6.2 Score=43.01 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=49.8
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 150 RISGNL--AWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 150 ~al~nL--G~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
+.-+-| |..++.+|+|.++.-+-.-..+++| .+.++- ||.|++...+|+||..++..+-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 344555 4457799999999999999999999 777777 9999999999999999877654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.5 Score=36.32 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+.++.+|..+.+.|+|++|..+++.+++.+|++.++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 357889999999999999999999999999998764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.67 E-value=4.5 Score=40.66 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=63.9
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYYMKALSL 178 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~yrKALeL 178 (479)
.++|+++.|..+|.|+-.+.+. ..+ .. ...-.+.+++.|.-++..+ +|++|...+++|+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~---~~~---~~------------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS---LDP---DM------------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc---CCc---HH------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3679999999999988776421 000 00 0112358899999999999 999999999999998
Q ss_pred ----CC---CCH-------HHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 179 ----ES---DKN-------KQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 179 ----dP---dna-------~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
.+ ..+ ..+. |+.+|+..+.++-...+.+++.
T Consensus 66 l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 66 LEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 22 111 1234 8999999988765555555443
|
It is also involved in sporulation []. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.45 Score=46.73 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHH
Q 011721 168 AERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEH 227 (479)
Q Consensus 168 A~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~r 227 (479)
|+.+|.+|+.+.|+++..|| ||.+....|+.=+|+. |.+++........+.+.....|++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999 9999999999999999 889885443333333333344444
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.17 E-value=9.4 Score=36.94 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=92.2
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchh
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRK 139 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k 139 (479)
+.-+.+.+..++|+..|..+-+-.-..-.....+-.+.+....|+...|+..|.++-+-.+-.... .+
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~----rd-------- 132 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG----RD-------- 132 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh----hH--------
Confidence 444667788888888887765544332111112224567788899999999998776543211100 00
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 011721 140 TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKSLLQAVRASSRNE 215 (479)
Q Consensus 140 ~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~ 215 (479)
-+...-+.++...|.|++-....+-. .- +.++ .+.. ||.+-.+.|+|.+|...+.-|..+-..+
T Consensus 133 ----------~ARlraa~lLvD~gsy~dV~srvepL-a~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 ----------LARLRAAYLLVDNGSYDDVSSRVEPL-AG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred ----------HHHHHHHHHHhccccHHHHHHHhhhc-cC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 14456678889999999876654432 22 2233 3455 9999999999999999555554443322
Q ss_pred cchHHHHHHHHHHHHHHHHHHh
Q 011721 216 KMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 216 ~a~~~~~k~~~rA~eaL~el~~ 237 (479)
. ....||+-+|.-|..
T Consensus 201 r------nirqRAq~mldlI~s 216 (221)
T COG4649 201 R------NIRQRAQIMLDLIDS 216 (221)
T ss_pred H------HHHHHHHHHHHHHhc
Confidence 2 234778777776654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.6 Score=46.87 Aligned_cols=28 Identities=14% Similarity=-0.046 Sum_probs=15.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 156 AWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 156 G~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
|..+..+|+..+|....++++++.|.++
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 5555555555555555555555555554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.8 Score=40.97 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+++.|.+.|++++|++.|.++....... ....+.++++-.+....|++.....+.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-----------------------~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSP-----------------------GHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-----------------------HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 346789999999999999999977642110 012247788888889999999999999
Q ss_pred HHHHHcCCC--CHHHH---H--HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 173 MKALSLESD--KNKQC---N--LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 173 rKALeLdPd--na~a~---n--LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
.+|-.+-.. +.... . -|..++..++|.+|.. +..++....
T Consensus 97 ~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 97 EKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 999887433 33322 2 6888899999999999 877765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.76 E-value=9.7 Score=39.26 Aligned_cols=147 Identities=14% Similarity=0.013 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDR------------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr------------ydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
..|.+.+..+|.+.+++..+....-..-. .+.-+.+|++|++.+|++.... ..+..++.+....++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~--l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLL--LGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhCCHHH
Confidence 46778889999999998887766444322 4556678999999999875443 334467778888888
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C-
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-------E- 179 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-------d- 179 (479)
....+++++..+|....+.-.. +-+.++ -...-.++.....|.++|.. .
T Consensus 84 l~~~we~~l~~~~~~~~LW~~y---------------------L~~~q~--~~~~f~v~~~~~~y~~~l~~L~~~~~~~~ 140 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREY---------------------LDFRQS--NFASFTVSDVRDVYEKCLRALSRRRSGRM 140 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHH---------------------HHHHHH--HhccCcHHHHHHHHHHHHHHHHHhhcccc
Confidence 8889999998876543211000 001111 01122345555555555543 1
Q ss_pred ---CC--C-H----HHHH-HHHHHHHcCCHHHHHHHHHH-HHhc
Q 011721 180 ---SD--K-N----KQCN-LAICLIRLNRIAEAKSLLQA-VRAS 211 (479)
Q Consensus 180 ---Pd--n-a----~a~n-LG~~L~~lGr~dEAi~l~kA-L~l~ 211 (479)
++ . . ..+. +...+.+.|-.+.|+.+.+| ++++
T Consensus 141 ~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 141 TSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00 1 1 1223 77788889999999996665 5554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.74 E-value=15 Score=41.25 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHH---cCCC-cHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhcCCC--hH--HHHHHHHHHHHHHcCCH
Q 011721 35 PSRAISLFWAAIN---AGDR-VDSALKDMAVVMK-QLDRSEEAIEAIKSFRCLCADD--SQ--ESLDNVLLELYKRSKRI 105 (479)
Q Consensus 35 ~eeAi~~y~kAL~---l~p~-~~~Al~~LA~vL~-~~GrydEAie~lekal~l~P~d--a~--~~l~~aLg~lY~klGr~ 105 (479)
...|+.+++.+++ +.|. ...+++.+|.+|. ...++++|+.++++++.+...+ .+ ......++.+|.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3456777777663 2222 2356788998887 7999999999999998887543 22 22234467889999888
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC--CC
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNL-AWAYLQQNDYESAERYYMKALSLE--SD 181 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nL-G~ay~~lGdydeA~~~yrKALeLd--Pd 181 (479)
. |+..++++++....... ... .++-.+ ...+...+++..|++.++....+. .+
T Consensus 117 ~-a~~~l~~~I~~~~~~~~----------------------~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGH----------------------SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred H-HHHHHHHHHHHHhccCc----------------------hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 8 99999999987433100 000 111112 223333389999999999999987 45
Q ss_pred CHHHH----H-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 182 KNKQC----N-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 182 na~a~----n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
++..+ . .|.++...+..++++. +.+++
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 55332 1 4667777788888888 66553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.27 Score=49.01 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
...+.++.+.|.+.|.+|+++.|+....+. +|....+.|+++.|.. +.+.++++|++.-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456789999999999999999999998888 9999999999999999 9999999998743
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.59 Score=33.06 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHcCCCC
Q 011721 150 RISGNLAWAYLQQNDYESAERY--YMKALSLESDK 182 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~--yrKALeLdPdn 182 (479)
+.++.+|..+.++|+|++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3678889999999999999999 66888888764
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.58 Score=48.50 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
..+|+.++|..+|.-|++++|++++++..+|.+.....+.-+|-.+|-+++.+.|.+..+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 467889999999999999999999999999999988899999999999999999988765443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.6 Score=36.76 Aligned_cols=74 Identities=24% Similarity=0.237 Sum_probs=52.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH---------HH-HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDKN---------KQ-CNLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEH 227 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna---------~a-~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~r 227 (479)
..+.|+|.+|++.+.+.+....... .+ .++|.++...|++++|+. +.+|+.+...+.. ...+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D-----~~~l~~ 82 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD-----RRCLAY 82 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC-----HHHHHH
Confidence 4688999999999999988744332 22 338999999999999999 9999988765433 123344
Q ss_pred HHHHHHHHHh
Q 011721 228 ASLMLTELES 237 (479)
Q Consensus 228 A~eaL~el~~ 237 (479)
+...+..+.+
T Consensus 83 al~~~~~l~~ 92 (94)
T PF12862_consen 83 ALSWLANLLK 92 (94)
T ss_pred HHHHHHHHhh
Confidence 5555555443
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.03 E-value=5.6 Score=44.40 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHH--HHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 38 AISLFWAAINAGDRVDSALKD--MAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 38 Ai~~y~kAL~l~p~~~~Al~~--LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
|+..+...+..+|.++..+.. +...+...++...|...+..++..+|.+...
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPA 103 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchH
Confidence 444444444455544433221 4555566666666666666666666665543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.95 E-value=2.7 Score=39.25 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
|+.+++-..-|+++...|++++|+..|+...+-.+..+...- ++.|+..+|+.
T Consensus 41 P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 41 PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 333445566788888888888888888888888877776655 78888888764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.67 E-value=3.3 Score=39.03 Aligned_cols=83 Identities=10% Similarity=-0.109 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
..+....+.+..++.+.+..++...-.+.|+....-..-|.++...|++.+|+.+|+.+....|..+..... ++.|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL--lA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL--LALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH--HHHHHH
Confidence 344455666777888888888876666888888888888899999999999999998887777776543221 234555
Q ss_pred HcCCH
Q 011721 101 RSKRI 105 (479)
Q Consensus 101 klGr~ 105 (479)
.+|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 55553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.62 E-value=20 Score=35.99 Aligned_cols=62 Identities=27% Similarity=0.261 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHH---HHHHHHHcCCCCHHHHHHHH-HHHHcCCHHHHHH-HHHHHHhc
Q 011721 150 RISGNLAWAYLQQNDYESAER---YYMKALSLESDKNKQCNLAI-CLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~---~yrKALeLdPdna~a~nLG~-~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.++..|+.+|+..+.++...+ +.+-+-.--|+.+..+.|.. ++...++.+++.. +.+.+..-
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 378889999999888765444 44445445677776664333 2233688888888 77776543
|
It is also involved in sporulation []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.60 E-value=7.5 Score=46.09 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
+..++|.++..+. +.+..+..+|.+..+.|...+||+.|-++ +|+..++ -..++-.+.|.|++-+.++
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~--eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYL--EVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHH--HHHHHHHhcCcHHHHHHHH
Confidence 5677777666553 23456778888888888888888877543 2222222 1235667788888888777
Q ss_pred HHHHHhchhHHhcCCCchH--HHHh----hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 113 KRKLKKTEEVIACGGKSTK--IARS----QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 113 ekALkl~p~~la~~~k~~~--~A~~----~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
.-|-+...+.- .... .|.. .........+|+.+ -....|.-++..|.|+.|.-+|--+ ..+
T Consensus 1157 ~MaRkk~~E~~----id~eLi~AyAkt~rl~elE~fi~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~ 1223 (1666)
T KOG0985|consen 1157 LMARKKVREPY----IDSELIFAYAKTNRLTELEEFIAGPNVA-NIQQVGDRCFEEKMYEAAKLLYSNV--------SNF 1223 (1666)
T ss_pred HHHHHhhcCcc----chHHHHHHHHHhchHHHHHHHhcCCCch-hHHHHhHHHhhhhhhHHHHHHHHHh--------hhH
Confidence 76654321100 0000 0000 00111122334333 2244566666666666666665432 223
Q ss_pred H-HHHHHHHcCCHHHHHH-HHHH
Q 011721 187 N-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 187 n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
. |+..+..+|+|..|.. ..+|
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 3 6666666666666665 4443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.59 E-value=32 Score=38.28 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=106.3
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
-++.+.+..+.+ ..+|+.++.+|.+. ..++=-...+++++.+=++. ....-|+..|.+ ++-..+..+|.+|+...
T Consensus 87 h~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 87 HLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 355666666554 45788999999988 66777778888888887754 344556677776 99999999999999752
Q ss_pred -hh------------HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 011721 120 -EE------------VIACGGKSTKIARSQGRKTQITLVQELSRISGN-LAWAYLQQNDYESAERYYMKALSLESDKNKQ 185 (479)
Q Consensus 120 -p~------------~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n-LG~ay~~lGdydeA~~~yrKALeLdPdna~a 185 (479)
|. ...+.+...+.......+.+-.+......+++. +-.-|....++++|++.+...|+.+..+..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 21 011111111111111111111111111122222 2234567789999999999999999998766
Q ss_pred HH-HHHHHHH--------------------cCCHHHHHH-HHHHHHhcCCC
Q 011721 186 CN-LAICLIR--------------------LNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 186 ~n-LG~~L~~--------------------lGr~dEAi~-l~kAL~l~P~n 214 (479)
.. +-.-+.. -.+|-+|+. +.+-+-.+..|
T Consensus 242 r~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 242 RKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 54 5444444 346788888 77777777665
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.07 E-value=2.8 Score=50.28 Aligned_cols=165 Identities=18% Similarity=0.111 Sum_probs=109.6
Q ss_pred HHHHHHHHcCCHHHHHH------HHHHHHH-cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-------hcCC-ChH
Q 011721 24 RAKRAQLVEKDPSRAIS------LFWAAIN-AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-------LCAD-DSQ 88 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~------~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-------l~P~-da~ 88 (479)
..++..+.++.+.+|.. ++..... +.|.....|..|+.++...|++++|+..-.++.- +++. ...
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Confidence 34556677777777766 5553332 5677788899999999999999999997666432 3322 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA 168 (479)
...+ ++......+....|...+.+++.+.-- .+. ...|..+-...+++.++...++++.|
T Consensus 1017 ~y~n--lal~~f~~~~~~~al~~~~ra~~l~~L--s~g----------------e~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1017 AYGN--LALYEFAVKNLSGALKSLNRALKLKLL--SSG----------------EDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred HhhH--HHHHHHhccCccchhhhHHHHHHhhcc--ccC----------------CCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 2222 334455666777888888887776210 000 12344445668999999999999999
Q ss_pred HHHHHHHHHcC-----CCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 169 ERYYMKALSLE-----SDKN---KQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 169 ~~~yrKALeLd-----Pdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+.+.+.|+++. |... ..+. ++..+..++++..|.. ...+.
T Consensus 1077 l~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1077 LRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 99999999964 3322 2344 7777777888877777 44333
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.07 E-value=7.3 Score=41.90 Aligned_cols=192 Identities=18% Similarity=0.161 Sum_probs=114.6
Q ss_pred HcCCHHHHHHHHHHHHHc---CC-C-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----cCCChHHHHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINA---GD-R-----VDSALKDMAVVMKQLDRSEEAIEAIKSFRCL----CADDSQESLDNVLLE 97 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l---~p-~-----~~~Al~~LA~vL~~~GrydEAie~lekal~l----~P~da~~~l~~aLg~ 97 (479)
.++++.+|...-...+.. .. . ....|+-+..+|...|+...-...+...+.. +....++.+.++|..
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 457888888776665541 11 1 2344667788888899977766666554432 233445666677778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
.|...+.|+.|.....++. +|+.. .+.+-+++++.+|.+..-+++|..|.++|-+|+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~--~pe~~--------------------snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSV--YPEAA--------------------SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHhhhHHHHHHHHHhhccc--Ccccc--------------------ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 8888888888776655432 12111 0123346889999999999999999999999999
Q ss_pred cCCCCHH-----HHH--HHHHHHHcCCHHHHHHHHHH-HH--hcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 178 LESDKNK-----QCN--LAICLIRLNRIAEAKSLLQA-VR--ASSRNEKMDESYAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 178 LdPdna~-----a~n--LG~~L~~lGr~dEAi~l~kA-L~--l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
..|++.. ..+ +-.+-.-+|.+.|-.-+.+. ++ +.|-.......-...+++..+.++.+...+..+-+
T Consensus 276 kapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~t 352 (493)
T KOG2581|consen 276 KAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGT 352 (493)
T ss_pred hCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCc
Confidence 9998652 234 23333445766643332221 00 00000000001124556677777777777665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.37 Score=31.13 Aligned_cols=23 Identities=39% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yr 173 (479)
++.+||.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 66788888888888888888776
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.59 E-value=11 Score=38.62 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH-cCC-----HHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIR-LNR-----IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~-lGr-----~dEAi~-l~kAL~l~P~n~~ 216 (479)
+--++...-+++..-+.|+.-+.+-...|+.|--|..++| -=.+... .|= .+.=+. ..+.|.+.|+|..
T Consensus 146 NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3358889999999999999999999999999998887776 2222211 221 233344 5578999999865
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.9 Score=35.01 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---H-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC---N-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~---n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
-...-|.-++.+.+.++|+...++||+.-++.++.+ - |..+|.+.|+|.+++. ..+-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778899999999999999999999987654 2 6778899999999999 5555544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.3 Score=45.74 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=77.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
..+.++++|..|+.-|.-||++..++.+........+- .+..-...+-..|..+|+.+++.+-|+.+-.+.|
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~--------di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAE--------DISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChh--------hHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 55778999999999999999997776543210000000 0000011345778999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.++|.+..... -|.|+..+.+|.||.. +.-|.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886665 8999999999999999 77664
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.6 Score=33.50 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
++|..||.+-+..++|++|+.-|+++|+|.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 367889999999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.62 E-value=47 Score=37.33 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=99.6
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcC--CCcHH----HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC---hHH-HHH
Q 011721 24 RAKRAQL-VEKDPSRAISLFWAAINAG--DRVDS----ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD---SQE-SLD 92 (479)
Q Consensus 24 ~a~~~~L-~~gd~eeAi~~y~kAL~l~--p~~~~----Al~~LA~vL~~~GrydEAie~lekal~l~P~d---a~~-~l~ 92 (479)
+.+.+++ .-.+++.|+.++.+++.+. ++..+ +...++.+|.+.+... |+..+.+++...-.. ... .+.
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr 142 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR 142 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence 4445555 3478999999999998754 33332 2345788888888888 999999988775542 111 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+.-+.++...+++..|++.++....+...... .. . ..-+....|.+.+..+..+++++..
T Consensus 143 ll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d----~~--~--------------~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 143 LLKIQLALQHKDYNAALENLQSIAQLANQRGD----PA--V--------------FVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC----HH--H--------------HHHHHHHHHHHHhcCCCchhHHHHH
Confidence 21134444458999999999988876321000 00 0 0113455578888899899999999
Q ss_pred HHHHHcCC------CC--H--HHHH--H-HHHHHHcCCHHHHHH
Q 011721 173 MKALSLES------DK--N--KQCN--L-AICLIRLNRIAEAKS 203 (479)
Q Consensus 173 rKALeLdP------dn--a--~a~n--L-G~~L~~lGr~dEAi~ 203 (479)
.+++...- +. + .++. | -.+++..|+++.+..
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98855322 21 1 2332 2 235677788777776
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.86 E-value=5.7 Score=35.24 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.|..+..++.||.=+-...-|+++..--+++|.+
T Consensus 74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3444557788887777777788888888888876
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.77 E-value=3 Score=46.98 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=69.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
-..+..+|..+++.|...+.-.|.... +...+....+|..+|+.+.+.|.|.++|+.|-+
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNY--------------------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 355677888888888888877655431 223345778999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~l~kAL 208 (479)
.+|.++-.-. +-.+....|.-++|+.+..++
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999986544 555666778889999944443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.94 E-value=9 Score=43.79 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
|++...+--+|.++...|.-++|.++|-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4444445555555555555555555443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.81 E-value=0.97 Score=45.17 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=52.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
....+|.+.|.++|.+|+.+.|.....+..+|......|+++.|...|++.++++|.+-
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 44578899999999999999999888899999999999999999999999999999863
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.34 E-value=4.1 Score=37.64 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCCCHH-H-HHHHHHHHHcCCHHHHHHH-HHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQND---YESAERYYMKALS-LESDKNK-Q-CNLAICLIRLNRIAEAKSL-LQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGd---ydeA~~~yrKALe-LdPdna~-a-~nLG~~L~~lGr~dEAi~l-~kAL~l~P~n~~ 216 (479)
...++++|++....+ ..+-+.+++..++ -.|.... . |.|+..+.++|+|++|+.| ..-|..+|+|..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 467999999987654 5677889999997 5555543 3 3399999999999999994 455788888744
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.31 E-value=59 Score=36.54 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=72.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHcCCHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL-CADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l-~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..+..|+++...-+|.+++-.=-.+...+...+..+...|+.+-|-..+..+.++ .|..+..++.. +.+-...|+++
T Consensus 306 f~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~--a~f~e~~~n~~ 383 (577)
T KOG1258|consen 306 FEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE--ARFEESNGNFD 383 (577)
T ss_pred hhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH--HHHHHhhccHH
Confidence 3467799999999999988755567778888999999999999999888877665 45544444433 34566789999
Q ss_pred HHHHHHHHHHHhchhHH
Q 011721 107 EEIELLKRKLKKTEEVI 123 (479)
Q Consensus 107 eAie~lekALkl~p~~l 123 (479)
.|..+|++...-.|..+
T Consensus 384 ~A~~~lq~i~~e~pg~v 400 (577)
T KOG1258|consen 384 DAKVILQRIESEYPGLV 400 (577)
T ss_pred HHHHHHHHHHhhCCchh
Confidence 99999999998776543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=86.03 E-value=8.3 Score=45.67 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=72.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc----C---CHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ----N---DYESAE 169 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l----G---dydeA~ 169 (479)
+++.....|+.|+..|++.-.-.|..- +-.++.+.+|..++.+ | .+++|+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRK-----------------------EGYEAQFRLGITLLEKASEQGDPRDFTQAL 539 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcc-----------------------cchHHHHHhhHHHHHHHHhcCChHHHHHHH
Confidence 556666777777777777666655321 1123556666665543 2 355555
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--------HHHHHHHHHHHHHHHHHhhh
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--------SYAKSFEHASLMLTELESQS 239 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--------~~~k~~~rA~eaL~el~~a~ 239 (479)
..|++.. -.|.-|--|. -|.+|..+|+|+|=++ ++-|++..|+++.+.. .|-..+..-...+.-+.-++
T Consensus 540 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 540 SEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred HHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432 2333344444 6677777777777777 6777777777665411 11122333344445555555
Q ss_pred hcCCCChhhHHHHHhhh
Q 011721 240 MLQPTDYGEDKRKKILS 256 (479)
Q Consensus 240 ~~~P~~~~~~~~~~~~~ 256 (479)
...|..-.....+.++.
T Consensus 619 ~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 619 WIAPEKISSREEEKFLE 635 (932)
T ss_pred HhCcccccchHHHHHHH
Confidence 55565443333334433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.98 E-value=9.7 Score=37.24 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=66.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l-~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
++...+...-....||.-. .+...-.-+.|...|.++-.. .=+.+...+.||..|. ..+.++|+..|.+++++.+.
T Consensus 96 ~l~~L~~~tk~S~dP~llY--y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 96 ELERLQEETKNSQDPYLLY--YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred HHHHHHHHHccCCCccHHH--HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC
Confidence 4455555555666777433 345554456677777554331 1134566777887777 67899999999999988654
Q ss_pred C--hHHHHHHHHHHHHHHcCCHHHHH
Q 011721 86 D--SQESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 86 d--a~~~l~~aLg~lY~klGr~deAi 109 (479)
+ ....+...|+.+|.++|+++.|-
T Consensus 173 ~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 173 DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3 33445566789999999998873
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.93 E-value=2.4 Score=43.12 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
++=.+|.+.++++.|..+.++.+.++|+++...-.. |-+|.++|-+.-|++.+...++..|+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDr--GliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDR--GLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCc--HHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 334445555555555555555555555554332222 23455555555555555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.89 E-value=66 Score=37.86 Aligned_cols=167 Identities=16% Similarity=0.040 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH---HHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ---ESLDNVLLEL 98 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~---~~l~~aLg~l 98 (479)
..+..-....|.+.+|+.+.-+| -+|.. .+.+.+.+.-+...++..- +...+..-|.+.- ..+.+..+..
T Consensus 351 ~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 351 RAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 34444456678888888755332 11211 1222333333444444332 2222333332210 0122223456
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.....++++|...+.++....+..... + . ....+...-..|.+....|+.++|+++.+.++..
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~-~-~---------------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHS-R-Q---------------GDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCccc-c-h---------------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 677899999999988887764432100 0 0 0011234455688899999999999999999999
Q ss_pred CCCCHH-----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 179 ESDKNK-----QCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 179 dPdna~-----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
-|.+.. .+. +|.+.+-.|++++|.. ..++.+...
T Consensus 488 L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 488 LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 888742 233 8999999999999999 666766543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.94 Score=29.22 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIK 77 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~le 77 (479)
++..+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 55677777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=85.18 E-value=11 Score=43.25 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
.....-..++..+++-+...|++++|-++|-.|++++.-+..
T Consensus 989 ~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynit 1030 (1636)
T KOG3616|consen 989 AAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT 1030 (1636)
T ss_pred hhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch
Confidence 344445578899999999999999999999999999977753
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.56 E-value=3.3 Score=42.08 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+.++=.+|...++++.|..+-.+.+.++|+++.... -|.+|.++|-+.-|+. +...+...|+++.
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 56788889999999999999999999999999997776 9999999999999999 8888999998754
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.47 E-value=9.6 Score=40.98 Aligned_cols=173 Identities=12% Similarity=0.158 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..++..+|.-|...|+++.|+..|-++...+-...+. .+...+..+-...|+|..-..+..+|... |.. ...
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~------~~~ 222 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDA------NEN 222 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chh------hhh
Confidence 3577889999999999999999999988777653221 11111223444567777777766666554 110 000
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHH-H-HHHHHHcCCHH-H
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL--------ESDKNKQCN-L-AICLIRLNRIA-E 200 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL--------dPdna~a~n-L-G~~L~~lGr~d-E 200 (479)
.+... .+.+.-.-|.+.+.+++|..|.++|-.+.-- .|.+...|. | |.+-+...++. +
T Consensus 223 ~~q~v-----------~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~ 291 (466)
T KOG0686|consen 223 LAQEV-----------PAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLN 291 (466)
T ss_pred HHHhc-----------CcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHH
Confidence 01000 1124455677788888999999999887653 344444443 2 22222222333 3
Q ss_pred HHH---HHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 201 AKS---LLQAVRASSRNEKMDE-SYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 201 Ai~---l~kAL~l~P~n~~a~~-~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
.+. +..-+++.|.-..... -+-..|+.-.++|.+++..+.+++
T Consensus 292 vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~ 338 (466)
T KOG0686|consen 292 VIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDM 338 (466)
T ss_pred HHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeech
Confidence 333 3334566664322111 234567788888888887776665
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.11 E-value=11 Score=45.62 Aligned_cols=134 Identities=20% Similarity=0.163 Sum_probs=97.5
Q ss_pred HHHHHHHHCCChHHHHH------HHHH-HHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 58 DMAVVMKQLDRSEEAIE------AIKS-FRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie------~lek-al~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
..|......|.+.+|.+ .+.. ...+.|+.+ .-...|+.+|.+.|++++|+..-.+|.-+.......+.
T Consensus 937 e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~--~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds--- 1011 (1236)
T KOG1839|consen 937 EQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVA--SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS--- 1011 (1236)
T ss_pred hhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHH--HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC---
Confidence 45666777788887777 3332 222334432 22345678899999999999999888887665544322
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHH-HHHHHHHcCCHHHH
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKN---KQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna---~a~n-LG~~L~~lGr~dEA 201 (479)
|+....+.+|+......++...|+..+-+|+++ .|++| ...+ ++.++...++++-|
T Consensus 1012 ---------------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~a 1076 (1236)
T KOG1839|consen 1012 ---------------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTA 1076 (1236)
T ss_pred ---------------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHH
Confidence 344458899999999999999999999999987 35554 3344 99999999999999
Q ss_pred HH-HHHHHHhc
Q 011721 202 KS-LLQAVRAS 211 (479)
Q Consensus 202 i~-l~kAL~l~ 211 (479)
+. +..|+..+
T Consensus 1077 l~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1077 LRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHHHHH
Confidence 99 77787754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.06 E-value=3.1 Score=45.96 Aligned_cols=85 Identities=26% Similarity=0.181 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCC
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ---NDYESAERYYMKALSLES 180 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l---GdydeA~~~yrKALeLdP 180 (479)
....|+..|.+++...|... ..|.|.+.++++. |+-=.|+.-...|++++|
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~--------------------------~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~ 442 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAI--------------------------YLLENRAAALMKRKWRGDSYLALRDCHVALRLNP 442 (758)
T ss_pred HHHHHHHHHHHHhhhccchh--------------------------HHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh
Confidence 34566777777776655443 3566666666665 455567777889999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHHHHHHHHh-cCCC
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKSLLQAVRA-SSRN 214 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~l~kAL~l-~P~n 214 (479)
....++. |+.++.+++++.+|+.+..|++. .|.+
T Consensus 443 s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9988887 99999999999999997776654 5534
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.77 E-value=78 Score=35.55 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
=|+.+++++-|...|+-.|.-.+|.+...+ ....|..+|+-..|.. +++.+.-
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 367899999999999999999999998777 8888999999999999 7777765
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=83.62 E-value=47 Score=32.90 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHc-----CCCCHHH----HHHHHHHHH-cCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSL-----ESDKNKQ----CNLAICLIR-LNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLT 233 (479)
Q Consensus 165 ydeA~~~yrKALeL-----dPdna~a----~nLG~~L~~-lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~ 233 (479)
.+.|..+|++|+++ .|.+|.. +|.+..|.+ +|+.++|+. ..+|+...-.... ...-..+..+..+++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~--~l~e~~~~d~~~ilq 219 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD--TLSEESYKDSTLILQ 219 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG--GSHTTTHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc--ccchhhhHHHHHHHH
Confidence 47899999999884 7888843 346666655 799999999 7777653321111 000123456666666
Q ss_pred HHHhh
Q 011721 234 ELESQ 238 (479)
Q Consensus 234 el~~a 238 (479)
-|+.-
T Consensus 220 lLrdN 224 (236)
T PF00244_consen 220 LLRDN 224 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.31 E-value=5.9 Score=40.53 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
...++..++..+...|+++.+++.+++++..+|-+-..+. .+...|.+.|+...||..|++.-...
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~--~lm~~y~~~g~~~~ai~~y~~l~~~~ 217 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYL--RLMEAYLVNGRQSAAIRAYRQLKKTL 217 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHH--HHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 3467788999999999999999999999999998754443 35578999999999999999988763
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.8 Score=40.02 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHH-HHHHHHHcCCHHHHH
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK----NKQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn----a~a~n-LG~~L~~lGr~dEAi 202 (479)
++++..+.||..|. ..+.++|+..|-++|++.+.+ ++.+. |+.++..+|++++|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45678888887766 789999999999999996554 56777 999999999999884
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.02 E-value=1.7 Score=32.12 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHH
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL 208 (479)
+||.+|+.+|+++.|.. +.+.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 36777777777777777 33334
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.96 E-value=3.8 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHH--HHHHHHhcCC
Q 011721 54 SALKDMAVVMKQLDRSEEAIEA--IKSFRCLCAD 85 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~--lekal~l~P~ 85 (479)
+.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3567788888889999999988 4466666554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.60 E-value=92 Score=35.21 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHc------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----hcCCC----------
Q 011721 34 DPSRAISLFWAAINA------------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC-----LCADD---------- 86 (479)
Q Consensus 34 d~eeAi~~y~kAL~l------------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~-----l~P~d---------- 86 (479)
-|++|...|.-|... .|-+.+.+..++.+...+|+.+-|...+++++- +.|..
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 466777777766652 345668899999999999999999999888653 22221
Q ss_pred ---hH-HHHHHHHH---HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH-HHHHHHHHH
Q 011721 87 ---SQ-ESLDNVLL---ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS-RISGNLAWA 158 (479)
Q Consensus 87 ---a~-~~l~~aLg---~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~-~al~nLG~a 158 (479)
+. -.+.++|. .-+.+.|-+.-|.+..+-.+.++|.- ++ .+++.+-..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e-------------------------DPl~~l~~ID~~ 387 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE-------------------------DPLGILYLIDIY 387 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC-------------------------CchhHHHHHHHH
Confidence 00 01112211 33456788888888888777776541 11 122222222
Q ss_pred HHHcCCHHHHHHHHHHH-----HHcCCCCHHHHHHHHHHHHcCC---HHHHHH-HHHHHHhcC
Q 011721 159 YLQQNDYESAERYYMKA-----LSLESDKNKQCNLAICLIRLNR---IAEAKS-LLQAVRASS 212 (479)
Q Consensus 159 y~~lGdydeA~~~yrKA-----LeLdPdna~a~nLG~~L~~lGr---~dEAi~-l~kAL~l~P 212 (479)
.++..+|.=-|..+... |.+-|+.+-..-||..|..... -..|.. +.+|+...|
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 23333444334433333 3445555444446666666654 455666 667777776
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.74 E-value=94 Score=34.72 Aligned_cols=203 Identities=14% Similarity=0.024 Sum_probs=117.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCL 82 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l 82 (479)
.+-...+..|.|..-.+..+......|+.+.|+..+...+. +.. .--++.+|.++.-+-+|..|-..+..+...
T Consensus 255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 34455667788877555444455556668888888888777 321 123567899999999999999999887766
Q ss_pred cCCChHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhch---hHH-----------hcCCCc-----------
Q 011721 83 CADDSQESLDNVLLELYK--------RSKRIEEEIELLKRKLKKTE---EVI-----------ACGGKS----------- 129 (479)
Q Consensus 83 ~P~da~~~l~~aLg~lY~--------klGr~deAie~lekALkl~p---~~l-----------a~~~k~----------- 129 (479)
..= ..+.+.+..|.+|. ..|+-++|-.+++....+.- +.+ .+....
T Consensus 333 sdW-S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P 411 (546)
T KOG3783|consen 333 SDW-SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASP 411 (546)
T ss_pred hhh-hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccch
Confidence 432 22333332322322 23455666555555444321 110 000000
Q ss_pred -hHHHHh----------hchhHHH-----hh-hhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC----HH
Q 011721 130 -TKIARS----------QGRKTQI-----TL-VQELS-RISGNLAWAYLQQNDYESAERYYMKALSL---ESDK----NK 184 (479)
Q Consensus 130 -~~~A~~----------~g~k~~l-----~L-~pe~~-~al~nLG~ay~~lGdydeA~~~yrKALeL---dPdn----a~ 184 (479)
.+.+.. ...+... .+ ++++. -.++.+|.++..+|+-..|..+|..+++- .-.+ |.
T Consensus 412 ~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~Pf 491 (546)
T KOG3783|consen 412 YYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPF 491 (546)
T ss_pred HHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccH
Confidence 000000 0000000 11 22222 23466799999999999999999988843 2222 34
Q ss_pred HHH-HHHHHHHcCC-HHHHHH-HHHHHHhcC
Q 011721 185 QCN-LAICLIRLNR-IAEAKS-LLQAVRASS 212 (479)
Q Consensus 185 a~n-LG~~L~~lGr-~dEAi~-l~kAL~l~P 212 (479)
++. ||..|..+|. +.+|.. +++|-....
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 555 9999999988 999999 666655443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.58 E-value=3.5 Score=38.08 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.|+..++++|+|+.|+.+....|+.+|+|..+..
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 47899999999999999999999999999999976543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.54 E-value=15 Score=34.47 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+....+.+...+++.+..++...--+.|+....-..-|.++...|+++||+.+|+.+..-.+..+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 33445556677888887777655557777777777778888888888888888887766665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.19 E-value=23 Score=39.17 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC-HHHHHH-HHHHHHhcCCCccc
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR-IAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr-~dEAi~-l~kAL~l~P~n~~a 217 (479)
+...|.+......+.+.|.+--..|.++|..+|++++.+. -|.-.++-+. ++.|.. ++++|+.+|+++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 4456666665556666699999999999999999999887 6777777775 888888 99999999999874
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=80.85 E-value=47 Score=33.34 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCCHHHHH--HHHHHHHcCCHHHHHH
Q 011721 148 LSRISGNLAWAYLQQNDYESAERYYMKA----------------LSLESDKNKQCN--LAICLIRLNRIAEAKS 203 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdydeA~~~yrKA----------------LeLdPdna~a~n--LG~~L~~lGr~dEAi~ 203 (479)
+++.+..+|.+|.+.|+|.+|+.+|-.. ..-.|...+.+. .-.-|+.+|+...|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 5679999999999999999999988532 112344444433 3344556666666666
|
; PDB: 3LKU_E 2WPV_G. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.67 E-value=8.8 Score=42.22 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHcCCHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-ADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-P~da~~~l~~aLg~lY~klGr~d 106 (479)
-++..||.-.|-.....++...|.++.-....+.+...+|.|+.|...+..+-..- ..+.. ..++..-...+|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~---~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST---LRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH---HHHHHHhhhchhhHH
Confidence 35778999989888888898777777767778899999999999998875443221 11111 112234456788888
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-KQ 185 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-~a 185 (479)
+|...-.-.|.- .-++++++.-.+....++|-+++|..+.++.+.++|... .+
T Consensus 375 ~a~s~a~~~l~~--------------------------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSN--------------------------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhcc--------------------------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 887654433321 112334444445556678889999999999999998754 34
Q ss_pred HH-HH-HHHHHcC-CHHHHHH
Q 011721 186 CN-LA-ICLIRLN-RIAEAKS 203 (479)
Q Consensus 186 ~n-LG-~~L~~lG-r~dEAi~ 203 (479)
.| |. .-|...| -|.||..
T Consensus 429 v~~~~~~~~~~~~~~~~~~~~ 449 (831)
T PRK15180 429 VNFLSSTQYFNDGNAFSEAFH 449 (831)
T ss_pred eeeeccceeccCcchHHHHHH
Confidence 44 43 3344444 3566655
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.52 E-value=8.1 Score=39.56 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
.....++..++..+...|+++.++..+++.++++|-+...|. |=.+|...|+...|+. |.+.-
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344568899999999999999999999999999999998887 8889999999999999 66543
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.42 E-value=66 Score=34.22 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--------------C-
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA--------------D- 85 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P--------------~- 85 (479)
|-..-++....+.++.+-+.....|++++|..+.||..||.- ..--..+|..+|+++++... .
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 333445667788889998999999999999998888766542 22345566677766654311 0
Q ss_pred --------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 86 --------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 86 --------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
+...++-.-|+.+-.++|+..+|+..++...+-.|
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11122333356778889999999999988777665
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=80.34 E-value=10 Score=44.89 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=69.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHC----C---ChHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQL----D---RSEEAIEAIKSFRCLCADDSQESLDNVLL 96 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~----G---rydEAie~lekal~l~P~da~~~l~~aLg 96 (479)
.+.+..+.|+.|+..|++.-..-|.- .+|.+.+|+.+..+ | .+++|+..|+.+.. .|.-+-.+++-+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA-- 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH--
Confidence 56788899999999999988776653 35777788776543 3 47788887776432 344344455544
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~ 122 (479)
-+|.++|+++|-+.+|.-|++.+|+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999998753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 7e-10
Identities = 54/351 (15%), Positives = 116/351 (33%), Gaps = 79/351 (22%)
Query: 30 LVEKDP-SRAISLFWAAINAGDR-----VDSAL-KDMAVVMKQLDRSEEAIEAIKSFRCL 82
++ KD S + LFW ++ + V+ L + +M + E + S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI--KTEQRQ--PSMMTR 110
Query: 83 CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK---TEEVIACG----GKST---KI 132
+ ++ L N K + + L++ L + + V+ G GK+ +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 133 ARSQGRKTQ-------ITL---------VQELSRISGNLAWAYLQQNDYESAERYYMKAL 176
S + + + L ++ L ++ + + ++D+ S + L
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----L 225
Query: 177 SLESDKNKQCNL------AICLIRL-----NRIAEA-----KSLLQAVRASSRNEKMDES 220
+ S + + L CL+ L + A K LL R + + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAA 284
Query: 221 YAK--SFEHASLMLTELESQSMLQPTDYGEDKRKKI-LSSCTYINGSEENVSRFMVPRKC 277
S +H S+ LT E +S+L Y + + + + T + +S ++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLT---TNPRRLS--IIAESI 337
Query: 278 RKF-----YYPKTPCERSNGATVTSTKTEARAVLKKAYA----LPAGV-IT 318
R + C++ +S A +K + P I
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 47/292 (16%), Positives = 97/292 (33%), Gaps = 61/292 (20%)
Query: 4 KDE--ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAI-NAGDRVDSALKDMA 60
DE L D P +++ +P R +S+ +I + D+ K +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLP------REVLTTNP-RRLSIIAESIRDGLATWDN-WKHV- 350
Query: 61 VVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE-IELLKRKLKKT 119
D+ IE+ S L + ++ D L ++ S I + L+ + K+
Sbjct: 351 ----NCDKLTTIIES--SLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179
+ + +V +L + S L +++ ES + ++ LE
Sbjct: 403 DV--------------------MVVVNKLHKYS--L----VEKQPKES--TISIPSIYLE 434
Query: 180 SDKNKQCNLAICLIRLNR-IAEAKSLLQAVRASSRNEKMDESYAKSFEHAS--LMLTELE 236
K K N L+R I + ++ + + + Y + H L E
Sbjct: 435 L-KVKLENEY----ALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHP 487
Query: 237 SQSMLQPTDYGEDK--RKKILSSCTYINGSEENVSRFMVPRKCRKFYYPKTP 286
+ L + + + +KI T N S ++ + + + P
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 27/268 (10%), Positives = 79/268 (29%), Gaps = 73/268 (27%)
Query: 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD---------------RSEE 71
+ V+ I FW + + ++ L+ + ++ Q+D R
Sbjct: 172 LSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 72 AIEAIKSF-------RCLCA-DD--SQESLD------------------NVLLELYKRSK 103
++ CL + + ++ + + L
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 104 RIEEEIELLKRKLKKTEEVIA-CGGKSTKIARSQGRKT---QITLVQELSRISGNLAWAY 159
++ L + + ++ + + T +++++ E R G W
Sbjct: 290 SLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDN 346
Query: 160 LQQNDYESAERYYMKAL-SLESDKNKQC--NLAICLIRLN-RIAEAKSLLQAV-RASSRN 214
+ + + +L LE + ++ L++ + I LL + ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTI--LLSLIWFDVIKS 402
Query: 215 EKMDESYAKSFEHASLMLTELESQSMLQ 242
+ M ++ +L S+++
Sbjct: 403 DVMV------------VVNKLHKYSLVE 418
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 37/191 (19%)
Query: 33 KDPSRAISLFWAAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AIKSFRCL 82
K+ AI + A D ++ A +A + ++ ++ A+ ++
Sbjct: 115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 83 CADDSQESL-DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ 141
+ V+ Y K ++ + L+ L+ +A
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE--------------LAMDIQND-- 218
Query: 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ------CNLAICLIRL 195
+ ++ N+A +Y + D + A ++ KA + +K L+ L +
Sbjct: 219 ----RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 196 NRIAEAKSLLQ 206
+ +A ++
Sbjct: 275 GQTQKAFQFIE 285
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 22/212 (10%)
Query: 19 DSPYVRAKRAQ--LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 76
+R RA+ + E +P +AIS AA + A ++ + QL E ++ +
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 77 KSFRCLCAD-DSQESLDNVLLELYKRSKRIEEEIELLK--RKLKKTEEVIACGGKSTKIA 133
+ CL D D + + YK+ K++ + IE + + + + + K
Sbjct: 235 R--ECLKLDQDHKRCFAH-----YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT- 286
Query: 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICL 192
+ ++ + R + + + A R + L +E D + A
Sbjct: 287 -------EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 193 IRLNRIAEA-KSLLQAVRASSRNEKMDESYAK 223
+ EA + A + ++++ E K
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 21/192 (10%)
Query: 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87
L + A+S F AA++ A A V + +S+ A+
Sbjct: 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-----LTKVIQL 89
Query: 88 QESLDNVLL---ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITL 144
+ L L + +++E + K+ V+ + +Q + +
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKK-------VLKSNPSENEEKEAQSQLIKSDE 142
Query: 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA-K 202
+Q L + A DY +A + K L + + + A C I+ +A
Sbjct: 143 MQRLR----SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198
Query: 203 SLLQAVRASSRN 214
L A + + N
Sbjct: 199 DLKAASKLKNDN 210
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 16/157 (10%), Positives = 48/157 (30%), Gaps = 15/157 (9%)
Query: 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114
A ++ + + +EA + K +++E L +R+ +
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA-F 154
Query: 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174
IA K + + + + A ++++ + A
Sbjct: 155 GSGDYTAAIAFLDKI------------LEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202
Query: 175 ALSLESDKNK-QCNLAICLIRLNRIAEA-KSLLQAVR 209
A L++D + ++ +L + + + ++
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-08
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEAKSLLQAVRASS 212
L + +Y AE + + + + A+ L L R + LL + A +
Sbjct: 32 GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91
Query: 213 RNEKMDESYAKSFEH 227
+++ +SY ++
Sbjct: 92 SDDETIQSYKQAILF 106
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 27/192 (14%), Positives = 67/192 (34%), Gaps = 38/192 (19%)
Query: 33 KDPSRAISLFWAAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIE----AIKSFRCL 82
++ AI F A DR++ A M+ + ++ +++ A + ++
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176
Query: 83 CADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ 141
A + + ++ + K+ E+ I + K+ +A ++ +
Sbjct: 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQ--------------KAYSMAEAEKQPQL 222
Query: 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-------CNLAICLIR 194
+ R N+ Q+ YE A Y+ +A+++ + N + +
Sbjct: 223 M------GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276
Query: 195 LNRIAEAKSLLQ 206
L +I +A
Sbjct: 277 LGKIDKAHEYHS 288
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 17/187 (9%)
Query: 19 DSPYVRAKRAQLVEK--DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAI 76
+R RA+ K +P +AIS AA A ++ + QL E ++ +
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211
Query: 77 KSFRCLCAD-DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135
+ CL D D + + ++ K +K IE EL++ + + + K
Sbjct: 212 R--ECLKLDQDHKRCFAH-YKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMKT--- 263
Query: 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIR 194
+ ++ + R + + + A R + L +E D + A +
Sbjct: 264 -----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 195 LNRIAEA 201
EA
Sbjct: 319 EEMYDEA 325
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 17/185 (9%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESL 91
+ A+S F AA++ A A V + +S+ A+ + + + D +
Sbjct: 17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT--KVIALKMDFTAAR 74
Query: 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRI 151
L + +++E + K+ V+ + ++ + + +Q L
Sbjct: 75 LQ-RGHLLLKQGKLDEAEDDFKK-------VLKSNPSEQEEKEAESQLVKADEMQRLR-- 124
Query: 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA-KSLLQAVR 209
+ A DY +A + K L + + + A C I+ +A L A +
Sbjct: 125 --SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182
Query: 210 ASSRN 214
S N
Sbjct: 183 LKSDN 187
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 14/148 (9%)
Query: 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114
A ++ + + +EA + K + E + + + L
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ-EEKEAESQLVKADEMQRLRSQALDAF 131
Query: 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174
I K + + + + A ++++ + A
Sbjct: 132 DGADYTAAITFLDKI------------LEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 175 ALSLESDK-NKQCNLAICLIRLNRIAEA 201
A L+SD ++ +L +
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELS 207
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
A +L ++A K ++L+ D + L++ ++ EA+ + V
Sbjct: 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL--- 98
Query: 213 RNEKMDESYAKSFEHASLMLTELESQSMLQPTDYGEDKRK 252
K + S + E S ++ E Q + D
Sbjct: 99 ---KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLE-SDKNKQCNLAICLIRLNRIAEAKSLLQAVRASS 212
L YE A + Y ++ ++ + A C ++L + A+S + RA +
Sbjct: 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116
Query: 213 RNEKMDESYAKSFEHASLMLTELESQ 238
++ A ML + ++
Sbjct: 117 AA---QPAHEALAARAGAMLEAVTAR 139
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-07
Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 37 RAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD----DSQESLD 92
A++ A A D + +A + D+ EEA + + + Q
Sbjct: 318 HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ--KEFSKELTPVAKQLLHL 375
Query: 93 NVLLELYKRSKRIEEEIELLKRKLK---KTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
+ K ++ I +K K+ E K KIA K +++ S
Sbjct: 376 RYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA-----KMRLSKNGADS 430
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALSLESD 181
LA+ + A+ + L S
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGLESGSL 462
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 9e-06
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 20/207 (9%)
Query: 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQES 90
++ L A+ V L+ A ++ D ++AIE +K + L ++
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPNNAYL 283
Query: 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150
+ + ++ E +K E+I K A L R
Sbjct: 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA--------DEANDNLFR 335
Query: 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNL-----AICLIRLNRIAEA-KSL 204
+ LA + + YE AE Y+ K S E + L L ++ +A
Sbjct: 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395
Query: 205 LQAVR---ASSRNEKMDESYAKSFEHA 228
++ V+ S EKM + K +
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMR 422
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 14/154 (9%)
Query: 59 MAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118
+A + ++E A+E ++ L + + + L + + + +
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG-------NYAWVYYHMGR 109
Query: 119 TEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ--QNDYESAERYYMKAL 176
+V K + K E + W L+ N E A+ + KAL
Sbjct: 110 LSDVQIYVDKVKHV----CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165
Query: 177 SLESD-KNKQCNLAICLIRLNRIAEAKSLLQAVR 209
+ LAI RL+ +++ + +R
Sbjct: 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 40/217 (18%)
Query: 37 RAISLFW--AAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94
+A L A A R + A V + R + + + +C S
Sbjct: 76 KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP-YRIE 134
Query: 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI--------------ARSQGRKT 140
EL EE LK + E C K+ + +
Sbjct: 135 SPELDC-----EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP 189
Query: 141 Q----ITLVQELSRISGNLAWAY-----------LQQNDYESAERYYMKALSLESDKNK- 184
I +++ R++ + + + + E+ +AL
Sbjct: 190 PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249
Query: 185 QCNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESY 221
+ A R + +A LL+ +A +
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLK--KALEYIPNNAYLH 284
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 40/203 (19%)
Query: 22 YVRAKRAQLVEKDPSRAISLFWAAI----NAGDRVDSA--LKDMAVVMKQLDRSEEAIEA 75
Y +A A K +A + N +A + +++K L R EA++
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 76 IKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR-----KLKKTEEVIACGGKST 130
I+ +Y + + L R + + + ++
Sbjct: 99 IEK----------------ASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAA 142
Query: 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ----- 185
+ ++ R Q + + G + ++Q ++ A K S+ +
Sbjct: 143 AVFENEERLRQA------AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196
Query: 186 --CNLAICLIRLNRIAEAKSLLQ 206
+ + A+ ++
Sbjct: 197 KCIAQVLVQLHRADYVAAQKCVR 219
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 23/180 (12%), Positives = 55/180 (30%), Gaps = 26/180 (14%)
Query: 54 SALKDMAVVMKQLDRSEEAIEA-IKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112
S AV K + E+A +A ++ + S + +
Sbjct: 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-----------M 85
Query: 113 KRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172
+ L++ E + K++ + G + + D A Y
Sbjct: 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTA------AMALDRAGKLM-EPLDLSKAVHLY 138
Query: 173 MKALSLESDKNKQ-------CNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSF 225
+A ++ ++ + + L+R + EA + LQ ++ + + + K
Sbjct: 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 21/188 (11%), Positives = 59/188 (31%), Gaps = 20/188 (10%)
Query: 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91
E + +A++ ++ A + + + + S+ A + +D +
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP-FVM 196
Query: 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA---------RSQGR---- 138
+ + ++ + + L+K + + R +
Sbjct: 197 HE-VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255
Query: 139 ----KTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLI 193
+ + L+ + + + + + ++E+A Y+ AL L D L C+
Sbjct: 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315
Query: 194 RLNRIAEA 201
+EA
Sbjct: 316 MYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 24/198 (12%), Positives = 54/198 (27%), Gaps = 43/198 (21%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI----EAIKSFRCLCADDSQESLDN 93
L + S L + +L+++ E + + + + S
Sbjct: 41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-----SNPVSWFA 95
Query: 94 VLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGKSTKIA 133
V + E L + + ++ +A
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA-------- 147
Query: 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICL 192
T L++ + Y N+ + AER++ +ALS+ + + +
Sbjct: 148 ----YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA 203
Query: 193 IRLNRIAEA-KSLLQAVR 209
+ A K L A+
Sbjct: 204 FQNGEWKTAEKWFLDALE 221
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQ----------CNLAICLIRLNRIAEA-K 202
+ Q ++++AE++++ AL + NL +L + AEA
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 203 SLLQAVRASSRN 214
QA+ +N
Sbjct: 258 YHRQALVLIPQN 269
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 8e-07
Identities = 23/188 (12%), Positives = 47/188 (25%), Gaps = 40/188 (21%)
Query: 38 AISLFWAAINA----GDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDS 87
A A A A + V +DR +EA + + D +
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-GDHT 63
Query: 88 QE--SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLV 145
E +L + + + + + + + + + +
Sbjct: 64 AEHRALHQ-VGMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAY-------- 111
Query: 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQ----CNLAICLIRLNRI 198
+A L D A + Y K+L D+ L + +
Sbjct: 112 --------EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 199 AEAKSLLQ 206
EA+
Sbjct: 164 LEAQQHWL 171
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 21/181 (11%), Positives = 52/181 (28%), Gaps = 33/181 (18%)
Query: 34 DPSRAISLFWAAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRCLC 83
A + F A +GD AL + +V + + A + L
Sbjct: 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100
Query: 84 ADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ 141
D + + + + + ++ L A+ +
Sbjct: 101 EDPLAASANAYE-VATVALHFGDLAGARQEYEKSLV--------------YAQQADDQVA 145
Query: 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEA 201
I + L Q+ + A++++++A + ++ + + RLN +
Sbjct: 146 I------ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199
Query: 202 K 202
Sbjct: 200 H 200
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
NL LQ A+ Y+ K+L L ++ +A L + A+ +
Sbjct: 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD--LFAQ 203
Query: 213 RNEKMDESY 221
+ S
Sbjct: 204 GGGQNARSL 212
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQ---CNLAICLIRLNRIAEA-KSLLQAVR 209
N +Q YE A + ++A + NL + +++ + A+A + +++R
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169
Query: 210 ASSRN 214
+
Sbjct: 170 LNRNQ 174
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDK-NKQCNLAICLIRLNRIAEA-KSLLQAVRAS 211
LA + + + + A+ Y KAL+ +S N L R EA + LL+A + +
Sbjct: 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135
Query: 212 SRNEKMDESYAKSFEHASLMLTEL 235
+ ++ FE+ L+ ++
Sbjct: 136 -----LYPERSRVFENLGLVSLQM 154
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEA-KSLLQAVRAS 211
L YLQ+ + E A+ KAL ++ + LA+ A + +A+ +
Sbjct: 42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD 101
Query: 212 SRN 214
SRN
Sbjct: 102 SRN 104
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIR-LNRIAEAKSLLQAVRA 210
+A ++ +Y A +YY + L I L + A S ++
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 36/168 (21%)
Query: 59 MAVVMKQLDRSEEAIE----AIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114
A + + L +++A E A+ + D + E +N L R R E + +
Sbjct: 48 RAEIYQYLKVNDKAQESFRQALS----IKPDSA-EINNNYGWFLCGRLNRPAESMAYFDK 102
Query: 115 KLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174
A + + N +Q + AE Y +
Sbjct: 103 ------------------ALADPTYPTPYIANL------NKGICSAKQGQFGLAEAYLKR 138
Query: 175 ALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESY 221
+L+ + LA + ++ +A + + SR E +
Sbjct: 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFK--KYQSRVEVLQADD 184
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEA-KS 203
++S I LA Y++ DY A AL + + A L +A +S
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64
Query: 204 LLQAVR 209
QA+
Sbjct: 65 FRQALS 70
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEAKSLLQ 206
LA +L+ ++ A + + + + D +L RL+R +A
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
LA Y + ++ A Y A +L + + C +RL +AK + V S
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134
Query: 213 RNEKMDE 219
+EK+
Sbjct: 135 NDEKLKI 141
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLE-SDKNKQCNLAICLIRLNRIAEA-KSLLQAVRAS 211
L ++Q + A Y + +L D L + + + A A+
Sbjct: 446 FLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505
Query: 212 SRNEKMDESYA 222
+ + ++ +A
Sbjct: 506 KKTQSNEKPWA 516
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQ--------CNLAICLIRLNRIAEA-KSL 204
L ++D ++A ++ AL L NL +L A +L
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 205 LQAVR 209
Q +
Sbjct: 540 NQGLL 544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 24/174 (13%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97
AIS + A + + QL A E ++S L D +L E
Sbjct: 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL-----LLNE 480
Query: 98 L---YKRSKRIEEEIELLKRKLKKTEEVIACGGKST-------KIARSQGRKTQ------ 141
L ++ I + L ++ + R
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 142 --ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICL 192
+ L + + +A YL + A + ++L++ ++ L L
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 29/222 (13%), Positives = 75/222 (33%), Gaps = 25/222 (11%)
Query: 11 VIHKVPAGDSPYVRAKRA----QLVEKDPSRAISLF--WAAINAGDRVDSALKDMAVVMK 64
V+ ++ +P ++A R ++ + + + L A +
Sbjct: 53 VLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112
Query: 65 QLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124
+ A+ + L + +++ + R++ + LK+ + E+
Sbjct: 113 YDQNPDAALRTLHQGDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL 165
Query: 125 CGGKSTKIARSQGRKTQ---ITLVQELSRISG-------NLAWAYLQQNDYESAERYYMK 174
+ ++ + G + + QE++ A ++ Q +E+AE +
Sbjct: 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225
Query: 175 ALSLES-DKNKQCNLAICLIRLNRIAEA-KSLLQAVRASSRN 214
AL +S NL + L + E L ++ + R+
Sbjct: 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 32/175 (18%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLL 96
A L ++ + Q R + + + + E+ N L
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLLAEAYSN-LG 74
Query: 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156
+YK +++E IE + A + L + NLA
Sbjct: 75 NVYKERGQLQEAIEHYRH---------A-----------------LRLKPDFIDGYINLA 108
Query: 157 WAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEA-KSLLQAVR 209
A + D E A + Y+ AL D + +L L L R+ EA L+A+
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 38/200 (19%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESL 91
+ R+ AI + A ++ V K+ + +EAIE + L D +
Sbjct: 47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGY 104
Query: 92 DNVLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGKSTK 131
N L + +E ++ L + EE AC K+
Sbjct: 105 IN-LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA-- 161
Query: 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAI 190
I + NL + Q + A ++ KA++L+ + NL
Sbjct: 162 ----------IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 191 CLIRLNRIAEA-KSLLQAVR 209
L A + L+A+
Sbjct: 212 VLKEARIFDRAVAAYLRALS 231
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 38/200 (19%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESL 91
+ AI F A+ A ++ V+K+ + A+ A R L +
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSLSPNHAVVH 240
Query: 92 DNVLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGKSTK 131
N L +Y I+ I+ +R + E C +
Sbjct: 241 GN-LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA-- 297
Query: 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAI 190
+ L + NLA +Q + E A R Y KAL + + NLA
Sbjct: 298 ----------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 191 CLIRLNRIAEA-KSLLQAVR 209
L + ++ EA +A+R
Sbjct: 348 VLQQQGKLQEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 43/194 (22%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQ 88
D A+ + +A+ + D+ ++K L R EEA AI+ + +
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE----TQPNFA- 169
Query: 89 ESLDNVLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGK 128
+ N L ++ I I ++ + + + +A +
Sbjct: 170 VAWSN-LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCN 187
+ ++L + + GNLA Y +Q + A Y +A+ L+ CN
Sbjct: 229 A------------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 188 LAICLIRLNRIAEA 201
LA L +AEA
Sbjct: 277 LANALKEKGSVAEA 290
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEAKSLLQ 206
LA Q D+E+AER+ M+ E D L+ + R+ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 38/195 (19%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLL 96
A + + AI A ++ V AI + + + D + ++ N L
Sbjct: 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--KAVTLDPNFLDAYIN-LG 210
Query: 97 ELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGKSTKIARSQ 136
+ K ++ + + R + + I ++
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA------- 263
Query: 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRL 195
I L NLA A ++ AE Y AL L NLA
Sbjct: 264 -----IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 196 NRIAEA-KSLLQAVR 209
I EA + +A+
Sbjct: 319 GNIEEAVRLYRKALE 333
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 37/146 (25%)
Query: 55 ALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110
A ++A +K+ EA + A++ LC + +SL+N L + + IEE +
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR----LCPTHA-DSLNN-LANIKREQGNIEEAVR 326
Query: 111 LLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170
L ++ L+ + E + NLA QQ + A
Sbjct: 327 LYRKALE--------------------------VFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 171 YYMKALSLESD-KNKQCNLAICLIRL 195
+Y +A+ + + N+ L +
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEM 386
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 30/182 (16%), Positives = 48/182 (26%), Gaps = 29/182 (15%)
Query: 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93
D R + AA+ + A +A + + A++ R L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQ--RGLALHPGHPEAVA 61
Query: 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153
L + +R E LL++ E I+
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASD--------------------------AAPEHPGIAL 95
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
L A E+A Y +A L ++ L RL L VRA+
Sbjct: 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
Query: 213 RN 214
Sbjct: 156 AQ 157
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 24/204 (11%), Positives = 58/204 (28%), Gaps = 51/204 (25%)
Query: 32 EKDPSRAISLFWAAINAGDRVDS-------ALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84
++ ++A LF ++ + + +L+ + + A E
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED--------- 259
Query: 85 DDSQESLDNVLLELYKRSKRIEEEIE------LLKRKLKKTEEVIACGGKSTKIARSQGR 138
K++ + + L+ + E K+ K+
Sbjct: 260 --------------IKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS---- 301
Query: 139 KTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNR 197
S + + +Y+ A + + KA L+ + LA R N+
Sbjct: 302 --------NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK 353
Query: 198 IAEAKSLLQAVRASSRNEKMDESY 221
+ ++L A + + E
Sbjct: 354 FDDCETLFS--EAKRKFPEAPEVP 375
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 28/231 (12%), Positives = 64/231 (27%), Gaps = 29/231 (12%)
Query: 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI-E 74
A P + + A + + ++ S ++
Sbjct: 107 DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166
Query: 75 AIKSFRCLCADDSQESLDNVLLEL--------YKRSKRIEEEIELLKRKLKKTEEVIACG 126
F+ + + + EL + + ++ E + + EE +
Sbjct: 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226
Query: 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186
+ L ++L+ + +ND A KA+ L N
Sbjct: 227 NED------------EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI 274
Query: 187 NLAICLIRLNRIAEA-KSLLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236
+A+ + N E +A+ K+D + + + H M L+
Sbjct: 275 YMALIMADRNDSTEYYNYFDKAL-------KLDSNNSSVYYHRGQMNFILQ 318
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 40/236 (16%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQ 88
++ F A++ + L + A E A L ++
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS----LNPENV- 344
Query: 89 ESLDNVLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGK 128
L L + + E + I
Sbjct: 345 YPYIQ-LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403
Query: 129 STKI----ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184
+ ++ + + + + L + + +A + KA L+ ++
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SE 462
Query: 185 Q--CNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESY-AKSFEHASLMLTELES 237
Q LA +++ +I EA L + ++ MDE A +F A+ + L +
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFE--DSAILARTMDEKLQATTFAEAAKIQKRLRA 516
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 32/185 (17%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97
+S + AL + + +A ++ + + S
Sbjct: 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIF---- 281
Query: 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAW 157
+ L + ++E K+ + E +
Sbjct: 282 -----------LALTLADKENSQEFFKFFQKAVDLNP------------EYPPTYYHRGQ 318
Query: 158 AYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASSRNEK 216
Y DY++A+ + KA SL + LA L + + E+++ +
Sbjct: 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN--ETKLKFPT 376
Query: 217 MDESY 221
+ E
Sbjct: 377 LPEVP 381
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 19/159 (11%), Positives = 41/159 (25%), Gaps = 13/159 (8%)
Query: 44 AAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103
R L + + +E D + L + L LY +
Sbjct: 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208
Query: 104 -RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162
+LL + +++ L + + + +
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVD------------DPLRENAALALCYTGIFHFLK 256
Query: 163 NDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEA 201
N+ A+ ++++L N LA+ L E
Sbjct: 257 NNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
N++ Y+ D E + KAL ++ D +K A L +A + + S
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA---MFDLSVLS 120
Query: 213 RNEKMDESYAKSFEHASLMLTELESQSMLQPTDY 246
N D + + +L ++ + D
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 42/216 (19%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQ 88
+ A L +IN + + +A+ + + S+E + A+ L +
Sbjct: 257 NNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVD----LNPEYP- 310
Query: 89 ESLDN---VLLEL---------YKRSKRIEEEIE-------LLKRKLKKTEEVIACGGKS 129
+ + + L +++++ + E L K K E A ++
Sbjct: 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370
Query: 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNL 188
L + A + D+++A + Y A LE + K +
Sbjct: 371 ------------KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 189 AICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKS 224
+ + +A S + + K+
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 22/174 (12%), Positives = 54/174 (31%), Gaps = 38/174 (21%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQ 88
+ AIS A+ G + + K ++ ++ + + I+
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE----------- 100
Query: 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148
L ++ + KL+ E+ + + + + E
Sbjct: 101 --YYQKSLTEHRT--------ADILTKLRNAEKELKK------------AEAEAYVNPEK 138
Query: 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-CNLAICLIRLNRIAEA 201
+ + Y ++D+ +A + Y + + + + N A L +L EA
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 14/172 (8%)
Query: 29 QLVEKDPSRAISLFWAAINAGDRVDSALK-DMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87
Q + + R +W ++ + S L ++A+ K+ ++A K L +
Sbjct: 29 QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK--ELLQKAPN 86
Query: 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE----------VIACGGKSTKIARSQG 137
E+ + ++ + + ++ L+ + + K
Sbjct: 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146
Query: 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLA 189
K ++ ++ + L YE A K + Q L
Sbjct: 147 YKK-LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 115 KLKKTEEVIACGGKSTKI----ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170
+ + + ++ ++ + + S+++ LA AY + +Y+ A
Sbjct: 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75
Query: 171 YYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAV 208
+Y + L + A + + +A + + +
Sbjct: 76 FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLE-SDKNKQCNLAICLIRLNRIAEAKSLLQAVRASS 212
L Y+ A Y ++ + + A CL++ +AEA+S L +
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119
Query: 213 RNEKMDESYAKSFEHASLMLTELESQ 238
N + + S ML ++ +
Sbjct: 120 AN---XPEFXELSTRVSSMLEAIKLK 142
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 41/200 (20%)
Query: 26 KRAQLVEKDPSRAISLFWAAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----A 75
K V++ +RA+ + + GDR A ++ L + AIE
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Query: 76 IKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133
++ R D + E + N L + + E+ E KR L E+ G+ A
Sbjct: 250 LRIAREF-GDRAAERRANSN-LGNSHIFLGQFEDAAEHYKRTLALAVEL----GEREVEA 303
Query: 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQC---- 186
+S +L Y +++ +A Y+ + L++ D+ +
Sbjct: 304 QSCY----------------SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347
Query: 187 NLAICLIRLNRIAEAKSLLQ 206
+L + A +
Sbjct: 348 SLGNAHSAIGGHERALKYAE 367
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDKNKQ------CNLAICLIRLNRI 198
+ LS I L AY DY A +Y+ L+L +S ++ NL L + R
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142
Query: 199 AEAKSLLQ 206
EA +
Sbjct: 143 DEAAICCE 150
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 25/145 (17%), Positives = 42/145 (28%), Gaps = 44/145 (30%)
Query: 49 GDRVD--SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106
GDR A ++ L + E+A E YKR+ +
Sbjct: 257 GDRAAERRANSNLGNSHIFLGQFEDAAE-----------------------HYKRTLALA 293
Query: 107 EEIE-------------LLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153
E+ L + I + IA+ G + +R
Sbjct: 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE------ARACW 347
Query: 154 NLAWAYLQQNDYESAERYYMKALSL 178
+L A+ +E A +Y + L L
Sbjct: 348 SLGNAHSAIGGHERALKYAEQHLQL 372
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 11/209 (5%)
Query: 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114
+L ++A + ++ EEA+ + + L + + L + ++ +++E + K
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 115 KLKKTEEVIACGGKSTKIARSQGRKTQ--------ITLVQELSRISGNLAWAYLQQNDYE 166
++ + + I + + NLA + +
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 167 SAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASSRNEKMDESYAKSF 225
A Y AL L+ D CNLA CL + + ++ + + ++
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVH 188
Query: 226 EHASLMLTELESQSMLQPTDYGEDKRKKI 254
H S++ +G KI
Sbjct: 189 PHHSMLYPLSHGFRKAIAERHGNLCLDKI 217
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 29/189 (15%)
Query: 64 KQLDRSEEAIEAIKSFRCLCADDSQESLDNV--LLELYKRSKRIEEEIELLKRKLKKTEE 121
+Q+ R + + + + Q +D + + Y + +E+ + ++ E+
Sbjct: 28 QQMGRGSMMADEEEEAKHV-LQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK 86
Query: 122 VIACGGKSTKIA--------------RSQGRKTQ---------ITLVQELSRISGNLAWA 158
+ + A + + L EL L
Sbjct: 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146
Query: 159 YLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRI---AEAKSLLQAVRASSRNE 215
Y ++ D SA + AL+ +K NL++ L +L ++ ++ +VR +
Sbjct: 147 YWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 216 KMDESYAKS 224
+MD +S
Sbjct: 207 QMDVLDGRS 215
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 39/236 (16%), Positives = 84/236 (35%), Gaps = 48/236 (20%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI------EAIKSFR---CLC 83
D + A + F A+ + +L+++++V++QL ++++ + +
Sbjct: 151 GDVTSAHTCFSGAL-THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209
Query: 84 ADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ 141
D + L N L LY + K +++ ++ ++ K+
Sbjct: 210 VLDGRSWYILGNAYLSLY----------FNTGQNPKISQQALSAYAQAEKV--------- 250
Query: 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAE 200
+ N A + + Y A + +A +L+ Q L L+R+
Sbjct: 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310
Query: 201 A------------KSLLQAVRASSRNEKMDESYAK-SFEHASLMLTELESQSMLQP 243
+S+L ++R + D Y S + +L EL+ S LQP
Sbjct: 311 LLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTL---ELKPLSTLQP 363
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-05
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLE-SDKNKQCNLAICLIRLNRIAEA-KSLLQAVRA 210
+L + A A L+ D LA+ + A SL + +
Sbjct: 56 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAK-SLLQAVRAS 211
L Y + +++A + AL + + L L A A+ + + A+
Sbjct: 24 TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83
Query: 212 SRN 214
Sbjct: 84 QSR 86
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQES 90
E D A+ LF AA+ + A + + + ++ AI A++ RCL D+Q +
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR--RCLELKPDNQTA 134
Query: 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150
L L + + E+L+ + + + R
Sbjct: 135 LMA-LAVSFTNESLQRQACEILRD-------WLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186
Query: 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNK---QCNLAICLIRLNRIAEA 201
I G+L L + + + ++ A+ L+ QC L + +A
Sbjct: 187 ILGSL----LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNKQ--CNLAICLIRLNRIAEA-KSLLQAVRA 210
L + A + L L+ D N+ LA+ + +A + L +R
Sbjct: 103 YLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 211 SSRNEKMDESYAKSFEHASLMLTELESQSMLQPTDYGE 248
+ + + A L ++ S+L + + E
Sbjct: 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 199
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 19/172 (11%), Positives = 47/172 (27%), Gaps = 30/172 (17%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92
+ + AI +F AV +L + + A + I+++ +S D
Sbjct: 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76
Query: 93 -NVLLELYKRSKRIEEEIELLKRKLK-KTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150
++ + + I+ + + T + G
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG------------------------ 112
Query: 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA 201
+ + + ++ A +Y K + + K L +A
Sbjct: 113 ---QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 26/131 (19%)
Query: 96 LELYKRSKRIEEEIE-------------LLKRKLKKTEEVIACGGKSTKIARSQGRKTQI 142
+ +++ I +E L + E K+ +AR +
Sbjct: 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262
Query: 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQC----NLAICLIRL 195
++ +L Y DYE A Y++K L++ D+ + +L L
Sbjct: 263 ------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316
Query: 196 NRIAEAKSLLQ 206
+A +
Sbjct: 317 GNHDQAMHFAE 327
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 29/196 (14%)
Query: 34 DPSRAISLFWAAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRCLC 83
D ++A+ + GD++ A ++ +K L +EAI + R L
Sbjct: 58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117
Query: 84 ADDSQ-ESLDN---VLLEL--YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137
+ +L N V ++ E + + + ++ + + G
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177
Query: 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQ----CNLAI 190
+ R GNL + ++ A + + L + DK + NL
Sbjct: 178 DRAAQ------GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Query: 191 CLIRLNRIAEAKSLLQ 206
I L A +
Sbjct: 232 AYIFLGEFETASEYYK 247
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
LQQ ++ A + + A CL+ + A+ LL +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 213 RNEKMDESYAKS 224
++ AK
Sbjct: 71 QDNSYKSLIAKL 82
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 16/149 (10%)
Query: 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQESLDNVLLELYKRSKRIEEEIELLK 113
+AV + A+ +++ L + ++ L + +
Sbjct: 91 VHAALAVSHTNEHNANAALASLR--AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148
Query: 114 RKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173
+ E + ++ + +L Y N+Y+SA
Sbjct: 149 AAPNEYRECRTLLHAALEM------NPNDAQLHA------SLGVLYNLSNNYDSAAANLR 196
Query: 174 KALSLESDKNK-QCNLAICLIRLNRIAEA 201
+A+ L D + L L NR EA
Sbjct: 197 RAVELRPDDAQLWNKLGATLANGNRPQEA 225
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 18/173 (10%)
Query: 32 EKDPSRAISLFWAAINAG-DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQE 89
+ + A F A A +R + A + + + + ++ AI A+ D
Sbjct: 34 LANLAEAALAFEAVCQAAPEREE-AWRSLGLTQAENEKDGLAIIALN--HARMLDPKDIA 90
Query: 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
L + + L+ + + ++ V
Sbjct: 91 VHAA-LAVSHTNEHNANAALASLRA-------WLLSQPQYEQLGSVNL----QADVDIDD 138
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA 201
+ + + N+Y AL + + + +L + N A
Sbjct: 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 30/162 (18%)
Query: 55 ALKDMAVVMKQLDRSEEAIE----AIKSFRCLCAD--DSQESLDNVLLELYKRSKRIEEE 108
AL +A +L A+E + L + LY+++
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVALYRQA------ 90
Query: 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA 168
E +R E+ ++ + + + + Y + + A
Sbjct: 91 -EDRERGKGYLEQALSVLKDA------------ERVNPRYAPLHLQRGLVYALLGERDKA 137
Query: 169 ERYYMKALSLESDKNKQCNLAICLIRLNRIAEA-KSLLQAVR 209
E +AL+LE + LA + + R+ EA +A+
Sbjct: 138 EASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALE 179
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 25/124 (20%)
Query: 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
+ +N L Y + + ++ L K L + E G +
Sbjct: 171 TKNN-LASCYLKQGKYQDAETLYKEILTRAHE-KEFGSVNGDNKPIWM------------ 216
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-------QCNLAICLIRLNRIAEAK 202
+ ++ + Y ++ K +L R ++ A
Sbjct: 217 ----HAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272
Query: 203 SLLQ 206
+L
Sbjct: 273 TLED 276
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
L+N L L + + EE +R L+ + G +A+++
Sbjct: 129 QLNN-LALLCQNQGKAEEVEYYYRRALEIYATRL--GPDDPNVAKTKN------------ 173
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALS------LESD----KNKQCNLAICLIRLNRIA 199
NLA YL+Q Y+ AE Y + L+ S K + ++
Sbjct: 174 ----NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229
Query: 200 EAKSLLQ 206
++ +
Sbjct: 230 DSAPYGE 236
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 25/192 (13%)
Query: 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-DSQES 90
E D I AAI A + + + + + + AI A++ RCL ++ ++
Sbjct: 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ--RCLELQPNNLKA 135
Query: 91 LDNVLLELYKRSKRIEEEIELLKR--------------------KLKKTEEVIACGGKST 130
L L Y + ++ E LK ++ +
Sbjct: 136 LMA-LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194
Query: 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLA 189
+ + L + ++ A + AL++ + L
Sbjct: 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254
Query: 190 ICLIRLNRIAEA 201
L +R EA
Sbjct: 255 ATLANGDRSEEA 266
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 26/131 (19%)
Query: 96 LELYKRSKRIEEEIE-------------LLKRKLKKTEEVIACGGKSTKIARSQGRKTQI 142
+ +++ I +E L + E K+ +AR +
Sbjct: 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266
Query: 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQ-------CNLAICLIRL 195
++ +L Y DYE A Y++K L++ + N + +L L
Sbjct: 267 ------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320
Query: 196 NRIAEAKSLLQ 206
+A +
Sbjct: 321 GNHDQAMHFAE 331
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 23/159 (14%), Positives = 50/159 (31%), Gaps = 28/159 (17%)
Query: 96 LELYKRSKRIEEEIE-------------LLKRKLKKTEEVIACGGKSTKIARSQGRKTQI 142
E YK++ + +++ L+ E+ I K IA+ +
Sbjct: 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306
Query: 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQ----CNLAICLIRL 195
R +L AY +++ A + K L + DK+ + NL+ + L
Sbjct: 307 ------GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Query: 196 NRI-AEAKSLLQAVRASSRNEKMDES-YAKSFEHASLML 232
+ S++ + + ++ L
Sbjct: 361 GLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENMEL 399
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 31/197 (15%)
Query: 34 DPSRAISLFWAAIN----AGDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRCLC 83
D ++A+ + GD++ A ++ +K L +EAI + R L
Sbjct: 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL- 120
Query: 84 ADDSQE--SLDN---VLLEL--YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQ 136
D E +L N V ++ E + + + ++ + +
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE---SDKNKQ----CNLA 189
G + R GNL + ++ A + + L + DK + NL
Sbjct: 181 GDRAAQ------GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234
Query: 190 ICLIRLNRIAEAKSLLQ 206
I L A +
Sbjct: 235 NAYIFLGEFETASEYYK 251
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 37/173 (21%)
Query: 49 GDRVD--SALKDMAVVMKQLDRSEEAIE----AIKSFRCLCADDSQE--SLDNVLLELYK 100
G R A ++ L +A+ + + D + E + N L Y
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERIAYSN-LGNAYI 60
Query: 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160
E E K+ L +AR + ++ +L Y
Sbjct: 61 FLGEFETASEYYKKTLL--------------LARQLKDRAVE------AQSCYSLGNTYT 100
Query: 161 QQNDYESAERYYMKALSLE---SDKNKQ----CNLAICLIRLNRIAEAKSLLQ 206
DYE A Y++K L++ D+ + +L L +A +
Sbjct: 101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
L+N L L + + EE +R L+ + + G +A+++
Sbjct: 155 QLNN-LALLCQNQGKYEEVEYYYQRALEIYQTKL--GPDDPNVAKTKN------------ 199
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK----------NKQCNLAICLIRLNRIA 199
NLA YL+Q ++ AE Y + L+ ++ + +
Sbjct: 200 ----NLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255
Query: 200 EAKSLLQ 206
+ S +
Sbjct: 256 DGTSFGE 262
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 25/124 (20%)
Query: 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149
+ +N L Y + + ++ L K L + E G +
Sbjct: 197 TKNN-LASCYLKQGKFKQAETLYKEILTRAHE-REFGSVDDENKPIWM------------ 242
Query: 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-------QCNLAICLIRLNRIAEAK 202
+ + + + ++ K NL R + A+
Sbjct: 243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298
Query: 203 SLLQ 206
+L +
Sbjct: 299 TLEE 302
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 27/165 (16%)
Query: 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97
A A + + ++LD + + F +D Q + V
Sbjct: 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNIVEFY 187
Query: 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAW 157
L + E + A +T +A + LS + L
Sbjct: 188 LGN------------ISEQTLMERLKADATDNTSLA------------EHLSETNFYLGK 223
Query: 158 AYLQQNDYESAERYYMKALSLESDKNKQ-CNLAICLIRLNRIAEA 201
YL D +SA + A++ + + L L + +
Sbjct: 224 YYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA-KSLLQAVR 209
L Q ++++A + L L+ N N I L R A LL +
Sbjct: 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEA 201
L ++ + A Y +A+ L + + + +CL + EA
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.87 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.85 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.84 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.83 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.81 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.81 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.79 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.79 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.75 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.75 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.74 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.74 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.73 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.72 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.71 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.67 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.65 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.64 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.64 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.64 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.6 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.56 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.56 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.54 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.49 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.49 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.46 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.44 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.41 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.41 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.39 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.39 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.38 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.37 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.36 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.35 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.32 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.32 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.32 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.29 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.26 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.23 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.11 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.08 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.06 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.03 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.91 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.9 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.84 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.8 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.62 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.54 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.21 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.04 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.04 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.37 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.05 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.51 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.46 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.44 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.09 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.02 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.79 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.39 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 94.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.92 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.62 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.48 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.25 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.33 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.32 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.3 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.61 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.88 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 88.39 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 88.31 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 87.55 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 86.77 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.17 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.7 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.4 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 81.67 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=191.71 Aligned_cols=174 Identities=19% Similarity=0.187 Sum_probs=158.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
+|.+...+...+.+++..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|+++.... .
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~ 78 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM--V 78 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--H
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH--H
Confidence 36667788888889999999999999999999999999999999999999999999999999999999999986654 4
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 95 LLELYKRS-----------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 95 Lg~lY~kl-----------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
++.+|..+ |++++|+..|+++++++|. ++.+++++|.+|..+|
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------YAPLHLQRGLVYALLG 132 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcC
Confidence 67889999 9999999999999998654 4458999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 164 DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 164 dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
++++|+.+|++|++++ +++.++. ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 133 ~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 133 ERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999 8888877 9999999999999999 99999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=181.43 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=156.0
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 18 GDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 18 ~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
....|...+.++...|++++|+.+|+++|+.+|++..++..+|.+|...|++++|+..+.+++...|+++.... .++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999876543 4568
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
++...+++++|+..+.+++.+.|. +..++..+|.+|..+|++++|+.+|+++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV--------------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc--------------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 899999999999999999988554 345889999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++|+++.++. ||.+|..+|++++|+. +.++|+++|+++
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999887 9999999999999999 999999999754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=190.81 Aligned_cols=222 Identities=14% Similarity=0.075 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|++++..+|++..++..+|.+|...|++++|+..|++++.++|+++... ..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL--MALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 3777788899999999999999999999999999999999999999999999999999999999987654 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCC-------------------CchHHHHhhchhHHHhhhhh--HHHHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGG-------------------KSTKIARSQGRKTQITLVQE--LSRISGNLAWAY 159 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~-------------------k~~~~A~~~g~k~~l~L~pe--~~~al~nLG~ay 159 (479)
.+|++++|+.+|++++++.|....... .....|.....+. +.+.|+ ++.+++++|.+|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA-AHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH-HHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH-HHhCcCccCHHHHHHHHHHH
Confidence 999999999999999999987542210 1122333333322 567788 889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTE 234 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~e 234 (479)
..+|++++|+.+|+++++++|+++.+++ ||.+|..+|++++|+. +.+++.++|++..+.. ......++..+++..
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999887 9999999999999999 9999999999866422 112233445555566
Q ss_pred HHhhhhcCCCC
Q 011721 235 LESQSMLQPTD 245 (479)
Q Consensus 235 l~~a~~~~P~~ 245 (479)
+++++.+.|.+
T Consensus 304 ~~~al~~~~~~ 314 (365)
T 4eqf_A 304 FLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHhCccc
Confidence 66666666653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=191.21 Aligned_cols=202 Identities=17% Similarity=0.104 Sum_probs=99.5
Q ss_pred HhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 12 IHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 12 v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l 91 (479)
+...|.....+...+.++...|++++|+.+|++++..+|++..++.++|.++...|++++|+..|++++..+|++....
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 138 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR- 138 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHH-
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH-
Confidence 3334444444444444444445555555555555554454444445555555555555555555555555544443222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
..++.+|..+|++++|+..|++++.+.|.... ........|...+.+. +.++|++..++.++|.++...
T Consensus 139 -~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 139 -SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-VTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp -HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHc
Confidence 22344455555555555555555555443110 0011112222222221 344555555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 163 NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++++|+..|++++.++|+++..+. ||.+|..+|++++|+. +.+++.++|+++.
T Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 6666666666666666666655554 6666666666666666 5556666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=190.49 Aligned_cols=238 Identities=16% Similarity=0.124 Sum_probs=194.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+..|.+++..+|+...++..+|.++...|++++|++.|++++..+|++
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 45566777888777888888999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAW 157 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ 157 (479)
+.... .++.+|...|++++|+..|++++.+.|..... .......|.....+. +.+.|++..++.++|.
T Consensus 169 ~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWS--NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHH--HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HHHCTTCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcCCHHHHHHHHH
Confidence 76543 46789999999999999999999998864311 112222333333222 5678889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHH
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLML 232 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL 232 (479)
+|..+|++++|+.+|+++++++|+++.++. ||.+|...|++++|+. +.+++.++|++...... .....++..+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999998887 9999999999999999 99999999988664221 112224455666
Q ss_pred HHHHhhhhcCCCChh
Q 011721 233 TELESQSMLQPTDYG 247 (479)
Q Consensus 233 ~el~~a~~~~P~~~~ 247 (479)
..+++++...|++..
T Consensus 326 ~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 326 RLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHHTTSCTTCHH
T ss_pred HHHHHHHhcCCCcHH
Confidence 667777778887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=181.35 Aligned_cols=173 Identities=17% Similarity=0.075 Sum_probs=147.4
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-----------CChHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-----------DRSEEAIE 74 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-----------GrydEAie 74 (479)
..+.+++...|.....+...+.++...|++++|+..|++++.++|++..++.++|.++..+ |++++|+.
T Consensus 26 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 26 TLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 3466778889988888889999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH
Q 011721 75 AIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGN 154 (479)
Q Consensus 75 ~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n 154 (479)
.|+++++++|+++...+ .+|.+|..+|++++|+..|+++++++ . ++.++++
T Consensus 106 ~~~~al~~~P~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~~~-~--------------------------~~~~~~~ 156 (217)
T 2pl2_A 106 VLKDAERVNPRYAPLHL--QRGLVYALLGERDKAEASLKQALALE-D--------------------------TPEIRSA 156 (217)
T ss_dssp HHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------------------CHHHHHH
T ss_pred HHHHHHHhCcccHHHHH--HHHHHHHHcCChHHHHHHHHHHHhcc-c--------------------------chHHHHH
Confidence 99999999999886654 46789999999999999999999984 2 3458999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
+|.+|..+|++++|+..|+++++++|+++.++. ||.++..+|++++|+. +.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999998887 9999999999999999 5554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=172.00 Aligned_cols=220 Identities=11% Similarity=0.072 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--H---HHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--Q---ESLDNVL 95 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~---~~l~~aL 95 (479)
.+...+.+++..|++++|+.+|.+++..+ .+..++..+|.++...|++++|+..|++++.++|++. . ......+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 45667788899999999999999999988 8889999999999999999999999999999988652 0 2334557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+.+|...|++++|+.+|++++.+.|....+.. .....|....... +.+.|+...++.++|.+|..+|++++|+.+|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAE-AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHH-HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 89999999999999999999999776432110 1112222222221 457788899999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~ 242 (479)
+++++|+++..+. +|.+|..+|++++|+. +.+++..+|++..... ......++..+++..+.+++.+.
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999998887 9999999999999999 9999999999866422 11122244445555555555556
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=181.80 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++.++|+++... ..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL--MALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 4667778899999999999999999999999999999999999999999999999999999999987654 34678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCC------------------------chHHHHhhchhHHHhhhhh--HHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGK------------------------STKIARSQGRKTQITLVQE--LSRISGN 154 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k------------------------~~~~A~~~g~k~~l~L~pe--~~~al~n 154 (479)
..|++++|+..|++++.+.|........ ....|.....+. +.+.|+ ...++.+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA-VRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH-HHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH-HHhCcCcccHHHHHH
Confidence 9999999999999999998865432210 011222222211 567788 7899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHH
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHAS 229 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~ 229 (479)
+|.+|..+|++++|+.+|+++++++|+++..++ +|.+|..+|++++|+. +.+++.++|++..+... .....++..
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999998887 9999999999999999 99999999988664221 112234444
Q ss_pred HHHHHHHhhhhcCCCC
Q 011721 230 LMLTELESQSMLQPTD 245 (479)
Q Consensus 230 eaL~el~~a~~~~P~~ 245 (479)
+++..+.+++...|.+
T Consensus 303 ~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 303 EAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5555555555556654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=174.35 Aligned_cols=204 Identities=15% Similarity=0.064 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGD-RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
+..+...+.+++..|++++|+.+|.+++..+| .+..+++.+|.++...|++++|+..|++++..+|+++... ..+|.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAY--IGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHH--HHHHH
Confidence 34666788889999999999999999999998 8888999999999999999999999999999999976554 44678
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+|..+|++++|+..|+++++++|....+ ......++.++|.++..+|++++|+.+|++|++
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATI-------------------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHH-------------------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 9999999999999999999998764321 111225899999999999999999999999999
Q ss_pred cCCC--CHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 178 LESD--KNKQCN-LAICLIRLNRIAEAKSLLQAVRASSRNEKMDE-SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 178 LdPd--na~a~n-LG~~L~~lGr~dEAi~l~kAL~l~P~n~~a~~-~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++|+ ++.++. ||.+|..+|+.. +.++..+.+.+..... ......+...+++..+++++.++|++..
T Consensus 146 ~~p~~~~~~~~~~l~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 146 VTSKKWKTDALYSLGVLFYNNGADV----LRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH----HHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHH----HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 9999 888877 999998876540 3333444333322111 1112223344555556666666776554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=215.67 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=157.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....|...+.++...|++++|+.+|++||+++|++..++++||.+|.++|++++|++.|+++++++|+++.++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n-- 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN-- 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--
Confidence 455556777889999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|.+|..+|++++|++.|++|++++|. +..++++||.+|..+|++++|+.+|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA--------------------------FADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678999999999999999999998554 446999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
|++++|+++.++. ||.+|..+|++++|+. +.+++.+.|+.
T Consensus 137 Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999887 9999999999999999 88999887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-20 Score=174.73 Aligned_cols=238 Identities=11% Similarity=0.028 Sum_probs=195.3
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~ 85 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...| ++++|+..|++++.++|.
T Consensus 44 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~ 123 (330)
T 3hym_B 44 LTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123 (330)
T ss_dssp HHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc
Confidence 4566788888887777767778888999999999999999999999999999999999999 999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++.... .++.+|...|++++|+..|++++.+.|.... ........|....... +.+.|++..++.++|
T Consensus 124 ~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 124 YGPAWI--AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA-LSIAPEDPFVMHEVG 200 (330)
T ss_dssp CTHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHH
T ss_pred cHHHHH--HHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhCCCChHHHHHHH
Confidence 876544 4678999999999999999999999875211 0112233343333322 567788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLE---------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYA 222 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLd---------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~ 222 (479)
.+|..+|++++|+.+|++++++. |.++..+. +|.+|..+|++++|+. +.+++.++|++..+.. ...
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 99999999999999999999997 66666776 9999999999999999 9999999999876432 122
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..+.+++..+|.+..
T Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 281 SLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHhccHHHHHHHHHHHHccCCCchH
Confidence 3446677788888889999998765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=185.95 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=182.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+..++...|.....+...+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|++
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 45566777777667777788889999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH---hcC---------------------CCchHHHHhhchhHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI---ACG---------------------GKSTKIARSQGRKTQI 142 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l---a~~---------------------~k~~~~A~~~g~k~~l 142 (479)
.... ..++.+|..+|++++|+..|++++.+.|... ... ......|....... +
T Consensus 94 ~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~ 170 (450)
T 2y4t_A 94 TAAR--LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI-L 170 (450)
T ss_dssp HHHH--HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-H
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 6554 4467899999999999999999999887543 110 01112222222221 4
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-
Q 011721 143 TLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE- 219 (479)
Q Consensus 143 ~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~- 219 (479)
.+.|.+..++.++|.+|..+|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++.++|++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 250 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 667888899999999999999999999999999999999998887 9999999999999999 8899999998865311
Q ss_pred --------------HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 220 --------------SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 220 --------------~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
......++..+++..+.+.+...|.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 1112224445556666666677887654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=173.60 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++.++|++.... ..++.+|.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR--LQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH--HHHHHHHH
Confidence 4566778889999999999999999999999999999999999999999999999999999999987554 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhch---hHHhcC---------------------CCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTE---EVIACG---------------------GKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 101 klGr~deAie~lekALkl~p---~~la~~---------------------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..|++++|+..|++++.+.| ...... ......|....... +.+.|++..++.++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI-LEVCVWDAELRELRA 161 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHH
Confidence 99999999999999999988 432110 11122222222221 466788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH--------------
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES-------------- 220 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~-------------- 220 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++..+|++......
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 9999999999999999 99999999988653110
Q ss_pred -HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 221 -YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 221 -~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.....++..+++..+.+.+...|.+..
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 012224455666666666777887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=196.03 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=164.6
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr-ydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
..+...+.++...|++++|+.+|.++|.++|++..+++++|.+|..+|+ +++|+..|++++.++|++..++.+ ++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~--~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH--RRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH--HHHH
Confidence 3556677788889999999999999999999999999999999999997 999999999999999999876654 5678
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..+|++++|+..|++||+++|. +..+|+++|++|..+|++++|+.+|+++|++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~--------------------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK--------------------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999998654 4459999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHH-cCCHHHH-----HH-HHHHHHhcCCCccchHHH---H-----HHHHHHHHHHHHHHhhhhcC
Q 011721 179 ESDKNKQCN-LAICLIR-LNRIAEA-----KS-LLQAVRASSRNEKMDESY---A-----KSFEHASLMLTELESQSMLQ 242 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~-lGr~dEA-----i~-l~kAL~l~P~n~~a~~~~---~-----k~~~rA~eaL~el~~a~~~~ 242 (479)
+|++..+++ +|.+|.. .|.+++| +. +.++|.++|++..+.... + ..+++|.+.+..+ ..+
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~ 305 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPS 305 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTT
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccC
Confidence 999999988 9999999 5565888 47 889999999987642211 1 1244555544443 567
Q ss_pred CCChh
Q 011721 243 PTDYG 247 (479)
Q Consensus 243 P~~~~ 247 (479)
|++..
T Consensus 306 p~~~~ 310 (382)
T 2h6f_A 306 HSSPY 310 (382)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=185.65 Aligned_cols=209 Identities=17% Similarity=0.092 Sum_probs=169.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
..+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 34567788889888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHhchh--HHhcC---------CCchHHHHhhchhHHHhhhh
Q 011721 86 DSQESLD--------NVLLELYKRSKRIEEEIELLKRKLKKTEE--VIACG---------GKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 86 da~~~l~--------~aLg~lY~klGr~deAie~lekALkl~p~--~la~~---------~k~~~~A~~~g~k~~l~L~p 146 (479)
+...... ..++.+|...|++++|+.+|++++.+.|. ..... ......|.....+. +.+.|
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p 244 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA-LTVRP 244 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCT
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCC
Confidence 5443322 23468899999999999999999999876 21100 02223333333322 56788
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++..+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|++.
T Consensus 245 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 89999999999999999999999999999999999998887 9999999999999999 999999998753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=161.27 Aligned_cols=207 Identities=13% Similarity=0.046 Sum_probs=167.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|.....+...+.+++..|++++|+.+|.+++..+|+...++..+|.++...|++++|++.|++++..+|.+.... ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~ 81 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN--NN 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH--HH
Confidence 3444455667788899999999999999999999999999999999999999999999999999999999987654 44
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 95 LLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 95 Lg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
++.+|... |++++|+..|++++. .|. .|....+++++|.+|..+|++++|+.+|+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~-~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA-DPT-----------------------YPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT-STT-----------------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc-CcC-----------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67899999 999999999999998 211 23344689999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC-CCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS-RNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P-~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++++++|++...+. +|.++..+|++++|+. +.+++...| .+..... ......+...++...+.......|++..
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 138 RSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999998887 9999999999999999 889999999 7755321 1111222233333333333445777655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-19 Score=163.32 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..|++++|+.+|.+++..+|+...++..+|.++...|++++|+..|++++..+|.+.... ..++.+|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY--YGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHH--HHHHHHHH
Confidence 4555667788889999999999999999999999999999999999999999999999999999876544 34678899
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
..|++++|+..|++++++.|.. ..++..+|.+|..+|++++|+.+|++++++.|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMEN--------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCS--------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HhccHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999986542 24778888888888888888888888888888
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++...+. +|.++...|++++|+. +.+++..+|++...... .....++..+++..+.+.+..+|++..
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 8887776 8888888888888888 77888888877553221 112223445555566666667787665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-19 Score=167.36 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=182.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+...+...|.+...+...+..++..|++++|+.+|.+++..+|....++..++.++...|++++|+..+++++..+|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 34556667787777777778888999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 87 SQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 87 a~~~l~~aLg~lY~klG-r~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+.... .++.+|...| ++++|+.+|++++.+.|..... .......|....... +.+.|+...++..+|
T Consensus 90 ~~~~~--~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 90 PVSWF--AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA-AQLMKGCHLPMLYIG 166 (330)
T ss_dssp THHHH--HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHTTTCSHHHHHHH
T ss_pred HHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence 76554 4678999999 9999999999999998763211 012223333333322 466788788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC---------CccchH---HHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR---------NEKMDE---SYA 222 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~---------n~~a~~---~~~ 222 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++...|. +..+.. ...
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887 9999999999999999 8899998743 222211 111
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 223 KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 223 k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...++..+++..+.+++...|.+..
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchH
Confidence 2234455666666667777887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=188.37 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=176.8
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
..+.+++...|.....+...+.++...|+ +++|+.+|.+||.++|++..+++++|.+|..+|++++|+..|++++.++|
T Consensus 118 ~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP 197 (382)
T 2h6f_A 118 KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 35677888999988888888999999996 99999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH-cC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ-QN 163 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~-lG 163 (479)
++..++.+ ++.+|..+|++++|+.+|+++|+++|. +..+|+++|.+|.. .|
T Consensus 198 ~~~~a~~~--lg~~~~~~g~~~eAl~~~~~al~l~P~--------------------------~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 198 KNYHAWQH--RQWVIQEFKLWDNELQYVDQLLKEDVR--------------------------NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp TCHHHHHH--HHHHHHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcC
Confidence 99877654 568899999999999999999998654 44599999999999 55
Q ss_pred CHHHH-----HHHHHHHHHcCCCCHHHHH-HHHHHHHcC--CHHHHHH-HHHHHHhcCCCccchH----HHHHHH-----
Q 011721 164 DYESA-----ERYYMKALSLESDKNKQCN-LAICLIRLN--RIAEAKS-LLQAVRASSRNEKMDE----SYAKSF----- 225 (479)
Q Consensus 164 dydeA-----~~~yrKALeLdPdna~a~n-LG~~L~~lG--r~dEAi~-l~kAL~l~P~n~~a~~----~~~k~~----- 225 (479)
.+++| +.+|++||+++|++..+++ ||.+|..+| ++++|+. +.++ ..+|++..+.. .+....
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 55888 5999999999999999888 999999988 6999999 6555 88888766432 122110
Q ss_pred --H-HHHHHHHHHHhh-hhcCCCCh
Q 011721 226 --E-HASLMLTELESQ-SMLQPTDY 246 (479)
Q Consensus 226 --~-rA~eaL~el~~a-~~~~P~~~ 246 (479)
+ ...+++..+.+. ..++|...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhH
Confidence 1 235566666666 67788644
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=166.04 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=164.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|....++..+|.++...|++++|+..|++++..+|.+
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 124 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 35566777888777777888899999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
.... ..++.+|...|++++|+..|++++.+.|. +..++..+|.+|...|+++
T Consensus 125 ~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 125 GDLF--YMLGTVLVKLEQPKLALPYLQRAVELNEN--------------------------DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHH--HHHHHHHHHTSCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCCH
T ss_pred HHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCc--------------------------cHHHHHHHHHHHHHcCCHH
Confidence 7654 44678999999999999999999988543 3459999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 167 SAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 167 eA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+.+|++++.++|+++..+. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999999999999998887 9999999999999999 8999999998754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-19 Score=168.67 Aligned_cols=240 Identities=13% Similarity=0.057 Sum_probs=179.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC--
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-- 84 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-- 84 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|
T Consensus 25 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 104 (359)
T 3ieg_A 25 QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Confidence 455677888888788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred -CChHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 85 -DDSQESLDN----------VLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 85 -~da~~~l~~----------aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
++....... .++.+|...|++++|+..|++++.+.|..... .......|....... +.+
T Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~ 183 (359)
T 3ieg_A 105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL 183 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh
Confidence 665443322 12578999999999999999999998753211 112222333322222 456
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------------HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-------------LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-------------LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.|++..++.++|.+|..+|++++|+.+|+++++++|++...+. +|.++...|++++|+. +.+++..
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7788888889999999999999999999999999888876432 3778888888888888 8888888
Q ss_pred cCCCccchH-------HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 211 SSRNEKMDE-------SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 211 ~P~n~~a~~-------~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.|++..... ......++..+++..+...+..+|.+..
T Consensus 264 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 264 EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH
Confidence 888654211 0112223445555555556666777654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-19 Score=167.26 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.++..+..++..|++++|+.+|.+++..+|+...++..+|.++...|++++|+..|++++.++|++.... ..++.+|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH--AALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHH--HHHHHHHH
Confidence 4456677889999999999999999999999999999999999999999999999999999999987654 34678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCC------------------------CchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGG------------------------KSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~------------------------k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..|++++|+..|++++.+.|....... .....|....... +.+.|++..++..+|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA-LEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH-HHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH-HhhCCCCHHHHHHHH
Confidence 999999999999999999876432110 0111222222221 466788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHH
Q 011721 157 WAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLM 231 (479)
Q Consensus 157 ~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~ea 231 (479)
.+|..+|++++|+.+|+++++++|+++..+. +|.+|...|++++|+. +.+++..+|++...... .....++..++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999998887 9999999999999999 89999999987654221 11222334445
Q ss_pred HHHHHhhhhcCCC
Q 011721 232 LTELESQSMLQPT 244 (479)
Q Consensus 232 L~el~~a~~~~P~ 244 (479)
+..+.+++...|.
T Consensus 260 ~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 260 AKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCc
Confidence 5555555555666
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=176.83 Aligned_cols=206 Identities=16% Similarity=0.100 Sum_probs=173.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|++
T Consensus 86 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 86 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 45667777888878888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHhchh--HHhc---------CCCchHHHHhhchhHH
Q 011721 87 SQESLDN--------------VLLELYKRSKRIEEEIELLKRKLKKTEE--VIAC---------GGKSTKIARSQGRKTQ 141 (479)
Q Consensus 87 a~~~l~~--------------aLg~lY~klGr~deAie~lekALkl~p~--~la~---------~~k~~~~A~~~g~k~~ 141 (479)
....... .++.++ ..|++++|+..|++++.+.|. .... .......|.....+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a- 243 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA- 243 (368)
T ss_dssp GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 6543222 244555 899999999999999999887 2210 012233443333332
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+.+.|++..+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|++
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5678888999999999999999999999999999999999998887 9999999999999999 99999999987
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=191.90 Aligned_cols=178 Identities=15% Similarity=0.042 Sum_probs=150.8
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDP-SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~-eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
+....|.....+...+.+++..+++ ++|+.+|.+|++.+|++..+++.||.+|..+|++++|+++|++++.++|+ .
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-- 170 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-- 170 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--
Confidence 3444554555666777788888888 99999999999888888888888999999999999999999998888887 3
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRS---------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 90 ~l~~aLg~lY~kl---------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
.....++.+|..+ |++++|+..|+++++++|. +..++++||.+|.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~ 224 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--------------------------DGRSWYILGNAYL 224 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHH
Confidence 3334567788888 8888888888888887544 4459999999999
Q ss_pred Hc--------CCHHHHHHHHHHHHHcCC---CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 161 QQ--------NDYESAERYYMKALSLES---DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 161 ~l--------GdydeA~~~yrKALeLdP---dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
.+ |++++|+.+|++|++++| +++.++. ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99 999999999999999999 8998887 9999999999999999 99999999998753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-19 Score=165.95 Aligned_cols=193 Identities=15% Similarity=0.062 Sum_probs=158.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ES 90 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~ 90 (479)
.|.....+...+..++..|++++|+..|.+++...|+. ..+++.+|.+|...|++++|+..|++++..+|+++. ..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34444566677888999999999999999999999888 899999999999999999999999999999997643 23
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc
Q 011721 91 LDNVLLELYKR--------SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 91 l~~aLg~lY~k--------lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l 162 (479)
....+|.+|.. +|++++|+..|++++..+|..... ..+.. ....+.......++++|.+|..+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~a~~----~~~~~~~~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----DDATQ----KIRELRAKLARKQYEAARLYERR 161 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----HHHHH----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456789999 999999999999999998864210 01110 00123344456789999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHH-HHHHHHHc----------CCHHHHHH-HHHHHHhcCCCcc
Q 011721 163 NDYESAERYYMKALSLESDK---NKQCN-LAICLIRL----------NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 163 GdydeA~~~yrKALeLdPdn---a~a~n-LG~~L~~l----------Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|+|++|+.+|+++++..|++ +.++. ||.+|..+ |++++|+. +.+++...|++..
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 99999999999999999995 35666 99999987 99999999 8899999998865
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-19 Score=162.62 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|....++..+|.++...|++++|++.|++++..+|.+.... ..++.+|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL--NNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH--HHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999986544 44678999
Q ss_pred HcCCHHHHHHHHHHHHH--hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 101 RSKRIEEEIELLKRKLK--KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 101 klGr~deAie~lekALk--l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
..|++++|+.+|++++. .. |....++.++|.+|..+|++++|+.+|++++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLY--------------------------PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTC--------------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccC--------------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999988 32 334568899999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+|++...+. ||.+|..+|++++|+. +.+++...|++..... ......++..+++..+...+...|.+..
T Consensus 171 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 999998877 9999999999999999 8889999998765322 1112223444455555555666777655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-19 Score=172.89 Aligned_cols=186 Identities=14% Similarity=0.096 Sum_probs=149.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 26 KRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
...+...++.++|+..|++.+.. +|++..+++.+|.+|...|++++|++.|++ |.+.... ..++.+|..+|
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~--~~l~~~~~~~g 144 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM--AMTVQILLKLD 144 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH--HHHHHHHHHTT
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCC
Confidence 44556677899999999998875 588999999999999999999999999987 7776544 34668899999
Q ss_pred CHHHHHHHHHHHHHhchhHHh------c-----CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIA------C-----GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la------~-----~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
++++|+..|+++++++|.... + .......|...+... +...|+++.+++++|.+|..+|++++|+.+|
T Consensus 145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999875320 0 112233444333332 4567888999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHH-HH-HHHHHHhcCCCccchH
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEA-KS-LLQAVRASSRNEKMDE 219 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEA-i~-l~kAL~l~P~n~~a~~ 219 (479)
++|++++|+++.++. ||.++..+|+++++ .. +.+++.++|+++.+.+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999998877 99999999999875 45 6788999999987543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=174.08 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=182.4
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.+++..|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|++
T Consensus 48 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 48 QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 34566777888777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred h---HHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 87 S---QESLD----------NVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 87 a---~~~l~----------~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
. ..... ..++.+|...|++++|+..|++++.+.|..... .......|....... +.+
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 206 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh
Confidence 6 43322 123567999999999999999999998753211 011222222222221 456
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-H------------HHHHHHcCCHHHHHH-HHHHHHh
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-L------------AICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-L------------G~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.|++..+++++|.+|..+|++++|+.+|++++.++|++...+. + |.++...|++++|+. +.+++.+
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7788889999999999999999999999999999999887654 5 889999999999999 8888998
Q ss_pred cCCCccch----H---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 211 SSRNEKMD----E---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 211 ~P~n~~a~----~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.|++.... . ......++..+++..+.+++...|.+..
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 330 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVN 330 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 88864311 0 1112223445555556666666777554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=200.84 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=130.6
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG 127 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~ 127 (479)
..|++.++|++||.+|.++|++++|+++|+++++++|+++.++.+ ||.+|.++|++++|+.+|++||+++|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~n--Lg~~l~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--LASVLQQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 468889999999999999999999999999999999999876544 678999999999999999999998554
Q ss_pred CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 128 KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 128 k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
++.+|++||.+|..+|++++|+++|++|++++|+++.+++ ||.+|..+|++++|+. +.
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4569999999999999999999999999999999999887 9999999999999999 99
Q ss_pred HHHHhcCCCccc
Q 011721 206 QAVRASSRNEKM 217 (479)
Q Consensus 206 kAL~l~P~n~~a 217 (479)
++++++|++..+
T Consensus 136 ~Al~l~P~~~~a 147 (723)
T 4gyw_A 136 TALKLKPDFPDA 147 (723)
T ss_dssp HHHHHCSCCHHH
T ss_pred HHHHhCCCChHH
Confidence 999999998765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=160.02 Aligned_cols=192 Identities=15% Similarity=0.043 Sum_probs=148.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-------DSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-------~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.+++... .....+...+.++...|++++|+.+|.+++..+|+. ..++..+|.++...|++++|+..|++++
T Consensus 28 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 28 YNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44555555 556777788889999999999999999999977665 6889999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHH
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
.+.|. +.++...|++++|+..|++++...|..... .......|.....+. +.+.|.+..+
T Consensus 107 ~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~ 175 (258)
T 3uq3_A 107 TEHRT----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM-IKRAPEDARG 175 (258)
T ss_dssp HHCCC----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred hcCch----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCcccHHH
Confidence 98775 123445555556666666655555542210 001122222222221 3445666679
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
+.++|.+|..+|++++|+.+|+++++++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999998887 9999999999999999 99999999
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=150.22 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++...|....++..+|.++...|++++|+..|++++..+|.+.... ..++.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA--TVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHH
Confidence 3445677888899999999999999999999999999999999999999999999999999999987554 34678899
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
..|++++|+.+|++++.+.|. +..++..+|.+|..+|++++|+.+|++++++.|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI--------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHhcCcH--------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 999999999999999988554 334889999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++...+. +|.++..+|++++|+. +.+++.++|++..
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9998877 9999999999999999 8899999988754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=165.72 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH----------------HHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKD----------------MAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~----------------LA~vL~~~GrydEAie~lekal~l~P 84 (479)
.++..+..++..|++++|+.+|.+++..+|++..+++. +|.+|...|++++|+..|++++.++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 44556677889999999999999999999999999999 99999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
+++...+ .+|.+|..+|++++|+..|+++++++|. ++.++++||.+|..+|+
T Consensus 86 ~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 86 NNVDCLE--ACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp TCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------CHHHHHHHHHHHHHHhH
Confidence 9986654 4678999999999999999999998554 44599999999987764
Q ss_pred --HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 165 --YESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 165 --ydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+.|+..|++++...|.....+++|.++..+|++++|+. +.+++.++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 567788899887655443334559999999999999999 99999999974
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-18 Score=176.61 Aligned_cols=236 Identities=10% Similarity=0.038 Sum_probs=147.4
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
.+++...|.....+...+.++...|++++|+..|.+++...|++..++..+|.+|...|++++|++.|++++.++|.+..
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 33444455555555555555556666666666666666666666667777777777777777777777777777777654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 89 ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 89 ~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
.+ +.++.+|.+.|++++|+..|++++.+.|..... .......|...+... +.+.|+++.+++.+|.+|
T Consensus 409 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 409 AW--IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS-YALFQYDPLLLNELGVVA 485 (597)
T ss_dssp HH--HHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHH
Confidence 33 335567777777777777777777766542100 001122222222221 355666777788888888
Q ss_pred HHcCCHHHHHHHHHHHHHc------CCCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHH
Q 011721 160 LQQNDYESAERYYMKALSL------ESDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEH 227 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeL------dPdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~r 227 (479)
...|++++|+.+|++++++ +|++ ...+. ||.+|...|++++|+. +.+++.++|++...... .....++
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 8888888888888888877 5554 45665 8888888888888888 77777777776553221 1122344
Q ss_pred HHHHHHHHHhhhhcCCCChh
Q 011721 228 ASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 228 A~eaL~el~~a~~~~P~~~~ 247 (479)
..+++..+++.+.++|++..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCCCChH
Confidence 45555556666666777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=154.19 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
....|++||.+|..+|++++|++.|+++++++|+++.... .++.+|..+|++++|+..+.+++...|.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~a~~~~~~~~~~~~~---------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLL--KLGKTYMDIGLPNDAIESLKKFVVLDTT---------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCch----------
Confidence 4568999999999999999999999999999999987654 4678999999999999999999987544
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
...++.++|.++...++++.|+..+.+++.++|++..++. +|.+|..+|++++|+. +.+++.
T Consensus 72 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 72 ----------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3458899999999999999999999999999999999887 9999999999999999 999999
Q ss_pred hcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCC
Q 011721 210 ASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTD 245 (479)
Q Consensus 210 l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~ 245 (479)
++|++..+.. ......++..+++..+++++.++|.+
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9999876532 11233466777777888888888853
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=157.41 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=161.4
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hcC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC--LCA 84 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~--l~P 84 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|....++..+|.+|...|++++|+++|++++. ..|
T Consensus 59 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 138 (252)
T 2ho1_A 59 PLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138 (252)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc
Confidence 455667777877777778888999999999999999999999999999999999999999999999999999998 666
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+... ...++.+|...|++++|+.+|++++++.|. +..++..+|.+|..+|+
T Consensus 139 ~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 139 ERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNRN--------------------------QPSVALEMADLLYKERE 190 (252)
T ss_dssp THHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------------------------CHHHHHHHHHHHHHTTC
T ss_pred ccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--------------------------cHHHHHHHHHHHHHcCC
Confidence 65443 345678999999999999999999988543 33588999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|+.+|++++++.|++...+. ++.++...|++++|+. +.+++.+.|++..
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999998887 9999999999999999 8889999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=166.86 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=170.2
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 43 AFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 45567778888777888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHH-----------HH-HH-HHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh
Q 011721 87 SQESLDN-----------VL-LE-LYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL 144 (479)
Q Consensus 87 a~~~l~~-----------aL-g~-lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L 144 (479)
....... .+ +. +|...|++++|+..|+++++..|..... .......|....... +.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~ 201 (327)
T 3cv0_A 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRA-VEL 201 (327)
T ss_dssp TTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHh
Confidence 6543221 00 23 4788899999999999999998753210 112233333333322 466
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.|++..++.++|.+|..+|++++|+.+|+++++++|++...+. +|.+|..+|++++|+. +.+++.+.|++
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 7888899999999999999999999999999999999998887 9999999999999999 88999999983
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=160.36 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=153.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELY 99 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY 99 (479)
.+..+..++..|++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++. .|.++.. .....+|.+|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 344556677788888888888888888887777888888888888888888888888877 4433322 1234466788
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
...|++++|+.+|++++++.|..... .......|.....+. +.+.|.+..+++++|..++..+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ-IRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG-CCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH-hhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877653210 012222333222222 34567777889999955555669999999
Q ss_pred HHHHHHHcCCCCHHHHH-HHHHHHHcCC---HHHHHH-HHHHHHhc---CCCcc--chH------HHHHHHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNKQCN-LAICLIRLNR---IAEAKS-LLQAVRAS---SRNEK--MDE------SYAKSFEHASLMLTE 234 (479)
Q Consensus 171 ~yrKALeLdPdna~a~n-LG~~L~~lGr---~dEAi~-l~kAL~l~---P~n~~--a~~------~~~k~~~rA~eaL~e 234 (479)
+|+++++++|++..++. +|.++..+|+ +++|+. +.+++.+. |+... ... ......++..+++..
T Consensus 164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987776 9999999888 888999 88888776 33110 001 011223455666777
Q ss_pred HHhhhhcCCCChh
Q 011721 235 LESQSMLQPTDYG 247 (479)
Q Consensus 235 l~~a~~~~P~~~~ 247 (479)
+.+++.++|++..
T Consensus 244 ~~~al~~~p~~~~ 256 (272)
T 3u4t_A 244 WKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCccHHH
Confidence 7777788888665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-18 Score=173.35 Aligned_cols=211 Identities=14% Similarity=0.065 Sum_probs=159.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHH--------
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK-------- 77 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~le-------- 77 (479)
..+.+++...|.....+...+.+++..|++++|+..|.+++..+|++..++..+|.++...|++++|+..|+
T Consensus 46 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 125 (537)
T 3fp2_A 46 KYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 346677888888888888888899999999999999999999999999999999999999999988887663
Q ss_pred --------------------------------------------------------------------------------
Q 011721 78 -------------------------------------------------------------------------------- 77 (479)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (479)
T Consensus 126 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 205 (537)
T 3fp2_A 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYS 205 (537)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------HHHHhcCCChHHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc------
Q 011721 78 ---------------------SFRCLCADDSQES-----LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC------ 125 (479)
Q Consensus 78 ---------------------kal~l~P~da~~~-----l~~aLg~lY~klGr~deAie~lekALkl~p~~la~------ 125 (479)
+++..+|++.... ....++.+|...|++++|+..|++++.+.|.....
T Consensus 206 ~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 206 ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALT 285 (537)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 2223344443211 12334577888888888888888888887762110
Q ss_pred --CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHH
Q 011721 126 --GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 126 --~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi 202 (479)
.......|....... +.+.|+++.++.++|.+|..+|++++|+.+|+++++++|++...+. +|.+|..+|++++|+
T Consensus 286 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKA-VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp TCCSSCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 112233444333332 4667888888899999999999999999999999999998887776 899999999999999
Q ss_pred H-HHHHHHhcCCCccc
Q 011721 203 S-LLQAVRASSRNEKM 217 (479)
Q Consensus 203 ~-l~kAL~l~P~n~~a 217 (479)
. +.+++..+|++...
T Consensus 365 ~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHhCCCChHH
Confidence 9 88888888887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=154.39 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA-DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P-~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+.++.+++.+|.++...|++++|+..|++++.++| .+....+. +|.+|..+|++++|+.+|++++++.|.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~------- 74 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN--CGVCADNIKKYKEAADYFDIAIKKNYN------- 74 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHTTCS-------
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH--HHHHHHHhhcHHHHHHHHHHHHHhCcc-------
Confidence 34568899999999999999999999999999998 77654433 788999999999999999999988544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHH-HHHHHHHcCCHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN-------KQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna-------~a~n-LG~~L~~lGr~dE 200 (479)
+..++.++|.+|..+|++++|+.+|+++++++|+++ ..+. +|.++..+|++++
T Consensus 75 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 75 -------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp -------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 445899999999999999999999999999999998 5566 9999999999999
Q ss_pred HHH-HHHHHHhcCC--Cccc
Q 011721 201 AKS-LLQAVRASSR--NEKM 217 (479)
Q Consensus 201 Ai~-l~kAL~l~P~--n~~a 217 (479)
|+. +.+++.++|+ +..+
T Consensus 136 A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 136 AEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccHHH
Confidence 999 9999999998 6543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=174.93 Aligned_cols=206 Identities=14% Similarity=0.062 Sum_probs=172.3
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+..++...|.....+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|++.|++++...|++.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 362 SNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 34455667776777778888999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhh------hhhH-HHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITL------VQEL-SRI 151 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L------~pe~-~~a 151 (479)
... ..++.+|...|++++|+.+|++++++.|..... .....+.|....... +.+ .|+. ..+
T Consensus 442 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 442 LPY--LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA-LLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHSCCCSGGGHHH
T ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhhhccccchhhHHHH
Confidence 554 346789999999999999999999987753211 112333444433332 233 4554 789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+..+|.+|...|++++|+.+|+++++++|+++..+. ||.+|...|++++|+. +.+++.++|++..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999999999999999999999999999888 9999999999999999 9999999998854
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=159.58 Aligned_cols=144 Identities=12% Similarity=0.050 Sum_probs=116.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRI 105 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~ 105 (479)
|.++...+++++|+..|.+++..+|+.+.+++.||.+|...|+|++|++.|++++.++|+++.++. .+|.+|..+|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR--FLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCch
Confidence 445556678899999999998888888888888999999999999999999999999998876554 356788889999
Q ss_pred HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHH
Q 011721 106 EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY-YMKALSLESDKNK 184 (479)
Q Consensus 106 deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~-yrKALeLdPdna~ 184 (479)
++|+.+|+++++++|. ++.++++||.+|..+|++++|... +++|++++|+++.
T Consensus 82 ~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT--------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 9999999988887544 445888899999989988877665 5889999999888
Q ss_pred HHH-HHHHHHHcCC
Q 011721 185 QCN-LAICLIRLNR 197 (479)
Q Consensus 185 a~n-LG~~L~~lGr 197 (479)
++. ++.++..+|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 887 7888877774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=189.71 Aligned_cols=159 Identities=10% Similarity=-0.074 Sum_probs=146.3
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 30 LVEKDPSRAISLFWAAI--------NAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL--------~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+..+++++|+..|.+++ ..+|++..+++.+|.+|..+|++++|+..|+++++++|+++..+++ +|.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY--RAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH--HHHHHHH
Confidence 67899999999999999 8899999999999999999999999999999999999999876544 5678999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|++++|+..|++|++++|. +..++++||.+|..+|+|++ +.+|++|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~--------------------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG--------------------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--------------------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 99999999999999998655 33589999999999999999 9999999999999
Q ss_pred CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 182 KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+..+++ ||.+|..+|++++|+. +.+++.++|++..+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 998877 9999999999999999 99999999998664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-17 Score=148.81 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=158.1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-CChHHHHHHHHHHHH--hc
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-DRSEEAIEAIKSFRC--LC 83 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-GrydEAie~lekal~--l~ 83 (479)
.+.+++...|.....+...+.++...|++++|+.+|.+++..+|+...++..+|.++... |++++|+..|++++. ..
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (225)
T 2vq2_A 30 SIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109 (225)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC
Confidence 355667778887777888888999999999999999999999999999999999999999 999999999999999 44
Q ss_pred CCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 84 ADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 84 P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
|.+.. ....++.+|...|++++|+.+|+++++..|. +..++..+|.+|..+|
T Consensus 110 ~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 110 PTPYI--ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--------------------------FPPAFKELARTKMLAG 161 (225)
T ss_dssp SCHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHT
T ss_pred cchHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CchHHHHHHHHHHHcC
Confidence 44333 3345778999999999999999999988554 3358899999999999
Q ss_pred CHHHHHHHHHHHHHcCC-CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 164 DYESAERYYMKALSLES-DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 164 dydeA~~~yrKALeLdP-dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++|+.+|+++++++| ++...+. ++.++...|++++|.. +..++..+|++..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999 9998887 8999999999999999 5555679998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=167.09 Aligned_cols=204 Identities=14% Similarity=0.062 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~ 90 (479)
.|..++.++...|++++|+.+|.+|+.+.+ ....++.++|.+|..+|++++|+.+|++++.+.|.... ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355667778889999999999999998632 12568999999999999999999999999999875321 22
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 91 LDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 91 l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
....+|.+|... |++++|+.+|++|+++.|.... ......++.++|.+|..+|+|++|+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------------------VALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344578999996 9999999999999999775210 0011347899999999999999999
Q ss_pred HHHHHHHHcCCCCHH-------HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-----HHHH-----HHHHHHH
Q 011721 170 RYYMKALSLESDKNK-------QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-----SYAK-----SFEHASL 230 (479)
Q Consensus 170 ~~yrKALeLdPdna~-------a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-----~~~k-----~~~rA~e 230 (479)
.+|++++++.|++.. .+. +|.|+..+|++++|+. +.+++.++|+...... .... ..++..+
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998753 455 9999999999999999 9999999998754321 1111 1234667
Q ss_pred HHHHHHhhhhcCCC
Q 011721 231 MLTELESQSMLQPT 244 (479)
Q Consensus 231 aL~el~~a~~~~P~ 244 (479)
++..+.+.+.++|.
T Consensus 259 A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 259 HCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHTTSSCCCHH
T ss_pred HHHHhccCCccHHH
Confidence 77777777777764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-17 Score=168.63 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=168.7
Q ss_pred HHHHHhhCCCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDS-------PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFR 80 (479)
Q Consensus 8 ~~~~v~k~p~~~~-------pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal 80 (479)
+.+++...|.... .+...+.++...|++++|+.+|.+++..+|+ ..++..+|.++...|++++|+..|++++
T Consensus 225 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 3445566666533 3555667788899999999999999999999 8899999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 81 CLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 81 ~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
..+|+++... ..++.+|...|++++|+..|++++.+.|.. ..++.++|.+|.
T Consensus 304 ~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------~~~~~~la~~~~ 355 (537)
T 3fp2_A 304 DLNPEYPPTY--YHRGQMYFILQDYKNAKEDFQKAQSLNPEN--------------------------VYPYIQLACLLY 355 (537)
T ss_dssp HHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------------------SHHHHHHHHHHH
T ss_pred ccCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHH
Confidence 9999987654 446789999999999999999999986542 247888999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---------HHHHHH----
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---------SYAKSF---- 225 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---------~~~k~~---- 225 (479)
.+|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++.+.|++..... ......
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999888777 9999999999999999 8888888877654311 111222
Q ss_pred ------HHHHHHHHHHHhhhhcCCCChh
Q 011721 226 ------EHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 226 ------~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++..+++..+.+++...|.+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 5566666667777777887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-18 Score=157.16 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc-------
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC------- 125 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~------- 125 (479)
.++++.+|.++...|++++|+..|++++..+|+++.... .++.+|...|++++|+..|++++.. +.....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYN--RRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHH--HHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHH
Confidence 356789999999999999999999999999999876544 3567999999999999999999994 322110
Q ss_pred ------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 126 ------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 126 ------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.......|.....+. +.+.|++..++.++|.+|..+|++++|+.+|+++++++|+++..+. +|.++...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAA-VDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 001122222222221 3445555566666666666666666666666666666666665554 66333333466
Q ss_pred HHHHH-HHHHHHhcCCCc
Q 011721 199 AEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~ 215 (479)
++|+. +.+++.++|++.
T Consensus 159 ~~A~~~~~~a~~~~p~~~ 176 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIY 176 (272)
T ss_dssp HHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCccch
Confidence 66666 555666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-17 Score=152.33 Aligned_cols=193 Identities=11% Similarity=-0.061 Sum_probs=151.1
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|.+.... ..++.+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH--LNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH--HHHHHHH
Confidence 34556678888999999999999999999999999999999999999999999999999999999987654 3467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcC--------CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACG--------GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~--------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...|++++|+.+|++++++.|...... ......|....... +...|++... ..++.++...+++++|+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH-FEKSDKEQWG-WNIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHSCCCSTH-HHHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCCcchHH-HHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999987643100 01111222221111 2233333333 4577788888999999999
Q ss_pred HHHHHHcCCCC----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 172 YMKALSLESDK----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 172 yrKALeLdPdn----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++++...|.. ...+. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 99999888754 45566 9999999999999999 8889999997644
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-18 Score=170.56 Aligned_cols=225 Identities=17% Similarity=0.089 Sum_probs=168.8
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...|++++|+.+|.+++..+|+ ..++..+|.++...|++++|+..|++++..+|.+.... ..++.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--YHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH--HHHHHHH
Confidence 35556677788889999999999999988888 88888899999999999999999999998888876543 3466788
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHh---------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIA---------CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la---------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
...|++++|+..|++++.+.|.... ........|....... +.+.|++..++.++|.+|..+|++++|+.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA-KRKFPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8899999999999999988775211 0112233443333322 45667777888999999999999999999
Q ss_pred HHHHHHHcCCCCHH------HHH-HHHHHHH---cCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHH
Q 011721 171 YYMKALSLESDKNK------QCN-LAICLIR---LNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELE 236 (479)
Q Consensus 171 ~yrKALeLdPdna~------a~n-LG~~L~~---lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~ 236 (479)
+|+++++++|+++. .+. +|.++.. +|++++|+. +.+++..+|++..+... .....++..+++..+.
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999888753 565 9999999 899999999 88888888887654221 1223345556666666
Q ss_pred hhhhcCCCChhh
Q 011721 237 SQSMLQPTDYGE 248 (479)
Q Consensus 237 ~a~~~~P~~~~~ 248 (479)
+++...|++...
T Consensus 474 ~a~~~~~~~~~~ 485 (514)
T 2gw1_A 474 ESADLARTMEEK 485 (514)
T ss_dssp HHHHHCSSHHHH
T ss_pred HHHHhccccHHH
Confidence 777778876653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=162.52 Aligned_cols=228 Identities=13% Similarity=0.072 Sum_probs=165.8
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC----
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINA---------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---- 85 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l---------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~---- 85 (479)
...|-..+.++...|++++|+.+|.+|+++ ++....++.++|.+|..+|++++|+.+|++++.+.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666788999999999999999999874 5667788999999999999999999999999887542
Q ss_pred ----ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC------------CchHHHHhhchhHHHhhhhhHH
Q 011721 86 ----DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG------------KSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 86 ----da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~------------k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
.+......+.+.++...+++++|+.+|++|++++|....... .....|+...++ .+.++|++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~-al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ-AIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH-HHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HhhcCCcch
Confidence 233333333333344456799999999999999886432100 001112212222 167889999
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH----
Q 011721 150 RISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---- 219 (479)
Q Consensus 150 ~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---- 219 (479)
.++.++|.++.. .|++++|+.+|++++.++|++..++. ||.+|...|++++|+. +.+++..+|+++.+..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 999999877665 46889999999999999999999887 9999999999999999 9999999999876421
Q ss_pred HHH------------------HHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 220 SYA------------------KSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 220 ~~~------------------k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
.+. .......+++..+.+++..+|.+..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 110 1122344566666677777776554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.2e-17 Score=152.54 Aligned_cols=190 Identities=12% Similarity=0.014 Sum_probs=148.9
Q ss_pred HHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 46 INAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 46 L~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
....+....+++.+|..+...|++++|+..|++++..+|+++. ......+|.+|..+|++++|+..|+++++++|..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-- 85 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-- 85 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--
Confidence 3467788899999999999999999999999999999999832 1233457789999999999999999999997753
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH----------
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ--------QNDYESAERYYMKALSLESDKNKQC---------- 186 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~--------lGdydeA~~~yrKALeLdPdna~a~---------- 186 (479)
+....+++++|.+|.. +|++++|+..|++++++.|++..+.
T Consensus 86 ---------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 86 ---------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred ---------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 2234689999999999 9999999999999999999986332
Q ss_pred -------H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH-------HHHH---------HHHHHHHHHHHHHhhhhc
Q 011721 187 -------N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE-------SYAK---------SFEHASLMLTELESQSML 241 (479)
Q Consensus 187 -------n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~-------~~~k---------~~~rA~eaL~el~~a~~~ 241 (479)
. +|.+|..+|++++|+. +.+++...|++..... .+.. ..++..+++..+.+.+..
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4 8999999999999999 9999999998654211 1110 115556677777777777
Q ss_pred CCCChhhHHHHHhhhhh
Q 011721 242 QPTDYGEDKRKKILSSC 258 (479)
Q Consensus 242 ~P~~~~~~~~~~~~~~~ 258 (479)
.|++........++..+
T Consensus 225 ~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRA 241 (261)
T ss_dssp CTTCTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 88877544444444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-17 Score=164.12 Aligned_cols=206 Identities=16% Similarity=0.090 Sum_probs=157.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+.+++...|. ...+...+.++...|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.+
T Consensus 259 ~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 259 DIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 34555666676 55666667777788888888888888888888878888888888888888888888888888888887
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHH------H
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSR------I 151 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~------a 151 (479)
.... ..++.+|...|++++|+..|++++.+.|..... .......|....... +.+.|++.. +
T Consensus 338 ~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 338 IFPY--IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAP 414 (514)
T ss_dssp SHHH--HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHH
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHH
Confidence 6543 335677888888888888888888876642110 012222333322222 344555533 8
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWAYLQ---QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~ay~~---lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.++|.+|.. +|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999999999 99999999999999999999998877 9999999999999999 9999999998755
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=173.67 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=154.9
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC---------CChHHHHHHH
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQL---------DRSEEAIEAI 76 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~---------GrydEAie~l 76 (479)
..+.+++...|.....+...+.+++..|++++|+.+|.+++.++|+ ..++.++|.+|... |++++|++.|
T Consensus 124 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 124 VLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 3466778889988888889999999999999999999999999999 68999999999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRS--------KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQEL 148 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~kl--------Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~ 148 (479)
++++.++|+++..+. .++.+|..+ |++++|+.+|++|++++|.. +++
T Consensus 203 ~~al~~~p~~~~~~~--~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----------------------~~~ 257 (474)
T 4abn_A 203 KLAVQMDVLDGRSWY--ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA-----------------------SSN 257 (474)
T ss_dssp HHHHHHCTTCHHHHH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG-----------------------GGC
T ss_pred HHHHHhCCCCHHHHH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc-----------------------ccC
Confidence 999999999976554 467888888 99999999999999986620 134
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+.+++++|.+|..+|+|++|+.+|++|++++|++..++. +|.++..+|++++|+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999998887 9999999999999988
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=143.00 Aligned_cols=120 Identities=8% Similarity=0.053 Sum_probs=103.8
Q ss_pred HHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 45 AINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 45 AL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
+..++|+...++.++|.+|.+.|+|++|++.|++++.++|.++..+.+ +|.+|..+|++++|+..|+++|+++|.
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~--- 79 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSN--RAACLTKLMEFQRALDDCDTCIRLDSK--- 79 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HhhHHHhhccHHHHHHHHHHHHHhhhh---
Confidence 345788888999999999999999999999999999999998765543 567899999999999999999988554
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..+++++|.+|..+|++++|+.+|++|++++|++..++. |+.|+
T Consensus 80 -----------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 -----------------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -----------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 3458999999999999999999999999999999998877 88774
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=149.62 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=136.1
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...++..+..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...| ++.... .++.+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~--~~~~~ 82 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS--LIAKL 82 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH--HHHHH
Confidence 345667778889999999999999999999999999999999999999999999999999999999 764332 22222
Q ss_pred -HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 99 -YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 99 -Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+...+...+|+..|+++++++|. ++.+++++|.+|..+|++++|+.+|+++++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD--------------------------NFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhhcccchHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22333445688999998887544 456999999999999999999999999999
Q ss_pred cCCCC--HHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 178 LESDK--NKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 178 LdPdn--a~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++|+. +.++. ||.+|..+|++++|+. +.++|.
T Consensus 137 ~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 137 VNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99986 44666 9999999999999999 888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=146.80 Aligned_cols=187 Identities=12% Similarity=0.006 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH-HHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-LDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-l~~aLg 96 (479)
.+...+..++..|++++|+..|.+++...|+. ..+++.+|.+|...|++++|+..|++++..+|++.... ....+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34556678899999999999999999987764 47899999999999999999999999999999986421 122345
Q ss_pred HHHHH------------------cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 97 ELYKR------------------SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 97 ~lY~k------------------lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
.+|.. .|++++|+..|+++++.+|..... ..+.. . ...+..........+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~~a~~--~--l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----TDATK--R--LVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH-----HHHHH--H--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----HHHHH--H--HHHHHHHHHHHHHHHHHH
Confidence 55654 689999999999999998874310 01110 0 011223334566889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH---HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKN---KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna---~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|+|++|+..|+++++..|+++ .++. +|.+|..+|++++|+. +.+.+...|++..
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999999999999987 4566 9999999999999999 6666777777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=152.33 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=113.4
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.||.++..+|++++|++.|++++..+|+++...+ .+|.+|..+|++++|+.+|+++++++|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~--~la~~y~~~~~~~~A~~~~~~al~~~p~---------------- 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGF--YFAKLYYEAKEYDLAKKYICTYINVQER---------------- 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 4789999999999999999999998887665443 4679999999999999999999998554
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-H-HHHHHhcCCC
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-L-LQAVRASSRN 214 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l-~kAL~l~P~n 214 (479)
++.++++||.+|..+|++++|+.+|++|++++|+++.++. ||.+|..+|++++|+. + .+++.++|++
T Consensus 64 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 64 ----------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred ----------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 4569999999999999999999999999999999999887 9999999999998776 4 6899999998
Q ss_pred cc
Q 011721 215 EK 216 (479)
Q Consensus 215 ~~ 216 (479)
+.
T Consensus 134 ~~ 135 (150)
T 4ga2_A 134 PA 135 (150)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=155.05 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=142.8
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHH
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLV-------EKDP-------SRAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEE 71 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~-------~gd~-------eeAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydE 71 (479)
.+.+++...|.....+...+.++.. .|++ ++|+..|++|+. ++|++..++..+|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 5667777888877777777666543 4775 999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHH
Q 011721 72 AIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150 (479)
Q Consensus 72 Aie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~ 150 (479)
|++.|++++.+.|.++. .+ ..++.++.+.|++++|+..|++|+++.|.. ..
T Consensus 118 A~~~~~~al~~~p~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------------------~~ 169 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMIFKKAREDARTR--------------------------HH 169 (308)
T ss_dssp HHHHHHHHHTSSSSCTHHHH--HHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------------------TH
T ss_pred HHHHHHHHHhccccCccHHH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------------------HH
Confidence 99999999999999875 33 345678899999999999999999986532 12
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 151 ISGNLAWAYL-QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 151 al~nLG~ay~-~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
++...|.+.. .+|++++|+.+|++|++++|+++..+. +|.++..+|++++|+. +.+++..
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444433 268888888888888888888887777 8888888888888888 7788875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=155.71 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=156.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHc
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~aLg~lY~kl 102 (479)
...+++..|+++.|+..++. .+|....++..++..+...|++++|++.|++++.. +|+++... ..+|.+|...
T Consensus 40 l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--~~la~~~~~~ 114 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--LMAASIYFYD 114 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--HHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHC
Confidence 45678999999999988865 25556788899999999999999999999999876 59887553 4567899999
Q ss_pred CCHHHHHHHHHHHHHhchhHHh------cCCCchHHHHhhchhHHHhhhhhHHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 011721 103 KRIEEEIELLKRKLKKTEEVIA------CGGKSTKIARSQGRKTQITLVQELSRISGNLA--WAYLQQNDYESAERYYMK 174 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la------~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG--~ay~~lGdydeA~~~yrK 174 (479)
|++++|+..|++ .-++.... ........|....+.. +.+.|+...+....| .++...|++++|+.+|++
T Consensus 115 g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 115 QNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM-QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp TCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999998 11111110 0112333444433332 355666543333333 333355999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHH-HHHHHHhhhhcCCCChh
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASL-MLTELESQSMLQPTDYG 247 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~e-aL~el~~a~~~~P~~~~ 247 (479)
+++..|+++..++ +|.+|..+|++++|+. +.+++.++|+++.+... .....++..+ +...+++.+.++|++..
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 9999999999888 9999999999999999 99999999999775321 1122333333 34555667777898775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-17 Score=172.33 Aligned_cols=157 Identities=17% Similarity=0.071 Sum_probs=127.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
.|++++|+.+|+++++.+|++..++..+|.+|...|++++|++.|++++.++|+++.... .++.+|..+|++++|+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA--RLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHH--HHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHCCCHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999876544 467899999999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAI 190 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~ 190 (479)
|+++++++|. +..+++++|.+|..+|++++|+.+|+++++++|++..++. ||.
T Consensus 80 ~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAAPE--------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998554 3458999999999999999999999999999999998877 999
Q ss_pred HHHHc---CCHHHHHH-HHHHHHhcCCCcc
Q 011721 191 CLIRL---NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 191 ~L~~l---Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..+ |++++|+. +.+++..+|++..
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 99999 99999999 9999999998754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=159.34 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=141.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNV 94 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~a 94 (479)
.|....++...+..++..|++++|+..|++++..+|++..+++.||.+|..+|++++|+..|++++..+|+.... ...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ--GLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH--HHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH--HHH
Confidence 465556777777888889999999999999999999999999999999999999999999999999999954322 223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++..+...|+.++|+..|++++.++|. +..++++||.+|..+|++++|+..|++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~--------------------------~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE--------------------------DAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 345577888889999999999887544 456899999999999999999999999
Q ss_pred HHHcCCCC--HHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 175 ALSLESDK--NKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 175 ALeLdPdn--a~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
++.++|++ ..++. ||.+|..+|+.++|+. +.+++.
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999998 66776 9999999999999999 888775
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-16 Score=147.84 Aligned_cols=158 Identities=11% Similarity=0.004 Sum_probs=136.0
Q ss_pred HcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 31 VEKDPSRAISLFWAAINAG----DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~----p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
..+++++|+..|.+++... |....++..+|.++...|++++|+..|++++.++|+++... ..+|.+|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF--NYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHccCHH
Confidence 3578999999999999873 45678899999999999999999999999999999987654 34678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+.+|++++.+.|. +..++.++|.+|..+|++++|+.+|+++++++|++....
T Consensus 95 ~A~~~~~~al~~~~~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT--------------------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHHHCTT--------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCcc--------------------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999998654 234889999999999999999999999999999998766
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 187 NLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 187 nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+..++...|++++|+. +.+++...|++..
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 179 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcchH
Confidence 63334467799999999 7788888887643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=150.62 Aligned_cols=174 Identities=21% Similarity=0.290 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCCh
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADDS 87 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~da 87 (479)
.+...+.+++..|++++|+.+|.+++.. .+....++..+|.+|...|++++|+..|++++.+. ++++
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4556677888999999999999999984 56667889999999999999999999999999874 3333
Q ss_pred H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH
Q 011721 88 Q-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE 166 (479)
Q Consensus 88 ~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd 166 (479)
. ......++.+|...|++++|+.+|++++.+...... .-.+....++.++|.+|..+|+++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG------------------KDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC------------------TTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC------------------CCChHHHHHHHHHHHHHHHcCCHH
Confidence 2 334455789999999999999999999998533211 001334568899999999999999
Q ss_pred HHHHHHHHHHHc--------CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 167 SAERYYMKALSL--------ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 167 eA~~~yrKALeL--------dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+|+.+|++++++ .|.....+. ||.+|..+|++++|+. +.+++.+.|
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999998 555556666 9999999999999999 888887643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=157.72 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=148.6
Q ss_pred HHHHHHhhCCCCCcHHHH------HHHHHHHcCCHHHHHHHHHHHHHc---CCC---cHHHHHHHHHHHHHCCChHHHHH
Q 011721 7 ELFHVIHKVPAGDSPYVR------AKRAQLVEKDPSRAISLFWAAINA---GDR---VDSALKDMAVVMKQLDRSEEAIE 74 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~------a~~~~L~~gd~eeAi~~y~kAL~l---~p~---~~~Al~~LA~vL~~~GrydEAie 74 (479)
++++.+...|.....+.. .+.++...|++++|+.+|.+|+.. .++ ...++..+|.+|...|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444443334443 667788899999999999999985 222 45789999999999999999999
Q ss_pred HHHHHHHhcCCChH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHH
Q 011721 75 AIKSFRCLCADDSQ-----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELS 149 (479)
Q Consensus 75 ~lekal~l~P~da~-----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~ 149 (479)
.|++++.+.+.... ....+.+|.+|..+|++++|+.+|++|+++.+.... .+...
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~ 224 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------------------PQLMG 224 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------------------hHHHH
Confidence 99999998765432 233455789999999999999999999998665311 11223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSL-----E-SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeL-----d-Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
.++++||.+|..+|++++|+.+|++|+++ + |..+.++. ||.+|..+|++++|+. +.+++.+.+.
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999994 5 66667776 9999999999999999 8899887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=175.77 Aligned_cols=160 Identities=13% Similarity=-0.033 Sum_probs=140.3
Q ss_pred hhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 13 HKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 13 ~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~ 92 (479)
...|.....+...+.+++..|++++|+..|.++++.+|++..+++++|.+|..+|++++|++.|+++++++|+++..++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~- 505 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKL- 505 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHH-
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH-
Confidence 5668888888888899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
.+|.+|..+|++++ +..|++|++++|. +..++++||.+|..+|++++|+.+|
T Consensus 506 -~lg~~~~~~g~~~~-~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 506 -ALAATAELAGNTDE-HKFYQTVWSTNDG--------------------------VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp -HHHHHHHHHTCCCT-TCHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHcCChHH-HHHHHHHHHhCCc--------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46789999999999 9999999998654 4459999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHH
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEA 201 (479)
++|++++|++..++. +|.+|+..|+.++|
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 999999999998877 99999887774444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=147.92 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|++++.++|++..+++.+|.++.+.|++++|+..|++++.++|+++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-------------------------------- 70 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-------------------------------- 70 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--------------------------------
Confidence 345556666777777777777777777777777777777777766654
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+|++||.+|..+|+|++|+.+|++|++++|+++.++. ||.+|..+|++
T Consensus 71 ------------------------------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 71 ------------------------------DYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 36677777777777777777777777777777776665 77777777777
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHH
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTEL 235 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el 235 (479)
++|+. +.+++.+.|+.. .-++|.++|..+
T Consensus 121 ~eA~~~~~~al~l~~~~~--------~~~~A~~ll~~l 150 (151)
T 3gyz_A 121 LKAKECFELVIQHSNDEK--------LKIKAQSYLDAI 150 (151)
T ss_dssp HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHH--------HHHHHHHHHHhh
Confidence 77777 777777777542 234555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=144.03 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD--------------NVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~--------------~aLg~lY~klGr~deAie~lekALkl 118 (479)
.+.++..|..+...|++++|+..|++++.++|+++...+. +.+|.+|..+|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998765543 11678999999999999999999998
Q ss_pred chhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 119 TEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 119 ~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
+|. +..+++++|.+|..+|++++|+.+|+++++++|+++.+++ ||.+|..+|+
T Consensus 84 ~p~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APN--------------------------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 654 4459999999999999999999999999999999999887 9999988775
Q ss_pred HH--HHHH-HHHHHHhcCCCcc-chH---HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 198 IA--EAKS-LLQAVRASSRNEK-MDE---SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 198 ~d--EAi~-l~kAL~l~P~n~~-a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
.+ ++.. +.+++ .|.... +.. ......++..+++..+++++.++|.+.
T Consensus 138 ~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 44 4444 33443 332211 110 111223566788888889999999743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-16 Score=157.23 Aligned_cols=230 Identities=8% Similarity=-0.060 Sum_probs=166.0
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhcCC
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQL--DRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~--GrydEAie~lekal~l~P~ 85 (479)
|.....|...+.++...|++++|+.+|.+++.+ .+....++.++|.++... ++|++|+++|++++.++|+
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 433456777888999999999999999999874 334677888888877664 5799999999999999999
Q ss_pred ChHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhchhHHhc----------CC---CchHHHHhhchhHHHhhhhhHHHH
Q 011721 86 DSQESLDNVLL-ELYKRSKRIEEEIELLKRKLKKTEEVIAC----------GG---KSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 86 da~~~l~~aLg-~lY~klGr~deAie~lekALkl~p~~la~----------~~---k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
++......+.+ ..+...|++++|++.|++|++++|..... .. .....|.....+. +.+.|....+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a-l~~~~~~~~~ 249 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA-LEKAPGVTDV 249 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHH-HHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHhCccHHHH
Confidence 98766554422 23556788999999999999998863210 00 1111233222222 5678888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-------------------CCHHHHHH-HHHHHHh
Q 011721 152 SGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL-------------------NRIAEAKS-LLQAVRA 210 (479)
Q Consensus 152 l~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-------------------Gr~dEAi~-l~kAL~l 210 (479)
+.++|.+|..+|++++|+.+|++|++++|+++.+++ ||.+|..+ +.+++|+. +.+++.+
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998877 88887643 34677888 7788888
Q ss_pred cCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 211 SSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 211 ~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
+|.+...... .....++..+++..+.+++..+|.+.
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 8877664221 11222334445555555666666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-16 Score=146.56 Aligned_cols=176 Identities=19% Similarity=0.171 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCC
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADD 86 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~d 86 (479)
..+...+.++...|++++|+.+|.+++.. .+....++..+|.+|...|++++|+.+|++++.+. +++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556777888999999999999999986 34566789999999999999999999999999875 443
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 87 SQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 87 a~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+. ......++.+|...|++++|+.+|++++.+...... ...+....++.++|.+|..+|++
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG------------------PDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC------------------TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHHHcCCH
Confidence 32 233455789999999999999999999998432110 00234456899999999999999
Q ss_pred HHHHHHHHHHHHcC-------------------------------------------------CCCHHHHH-HHHHHHHc
Q 011721 166 ESAERYYMKALSLE-------------------------------------------------SDKNKQCN-LAICLIRL 195 (479)
Q Consensus 166 deA~~~yrKALeLd-------------------------------------------------Pdna~a~n-LG~~L~~l 195 (479)
++|+.+|++++++. |....++. ||.+|..+
T Consensus 212 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 212 KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC
Confidence 99999999999853 44455666 99999999
Q ss_pred CCHHHHHH-HHHHHHhcCC
Q 011721 196 NRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 196 Gr~dEAi~-l~kAL~l~P~ 213 (479)
|++++|+. +.+++.+.|+
T Consensus 292 g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp TCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 99999999 8899998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=149.28 Aligned_cols=204 Identities=9% Similarity=0.011 Sum_probs=164.6
Q ss_pred HHHHHHh-hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhcC
Q 011721 7 ELFHVIH-KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 7 ~~~~~v~-k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~-Al~~LA~vL~~~GrydEAie~lekal~l~P 84 (479)
.+..++. -.|.....+...+.++...|++++|+..|++++..+|.+.. ++..+|.++...|++++|+..|++++..+|
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455666 36665566777788888899999999999999999998876 899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 85 DDSQESLDNVLLEL-YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 85 ~da~~~l~~aLg~l-Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
......+.. +.+ +...|++++|+..|+++++++|. ++.++.++|.++..+|
T Consensus 166 ~~~~~~~~~--a~~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 166 TRHHVYVTA--ALMEYYCSKDKSVAFKIFELGLKKYGD--------------------------IPEYVLAYIDYLSHLN 217 (308)
T ss_dssp CCTHHHHHH--HHHHHHTSCCHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCC
Confidence 886655433 222 22379999999999999998554 3458999999999999
Q ss_pred CHHHHHHHHHHHHHc---CCC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 164 DYESAERYYMKALSL---ESD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 164 dydeA~~~yrKALeL---dPd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
++++|+.+|++|++. .|+ ....+. ++.++...|++++|.. +.+++...|++.... ...++....+
T Consensus 218 ~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~---------~~~~~~~r~~ 288 (308)
T 2ond_A 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK---------ETALLVDRYK 288 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC---------HHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccc---------hHHHHHHHHH
Confidence 999999999999996 664 567777 8999999999999999 889999999876411 1133344445
Q ss_pred hhhcCCCChh
Q 011721 238 QSMLQPTDYG 247 (479)
Q Consensus 238 a~~~~P~~~~ 247 (479)
.+.+.|.+..
T Consensus 289 ~l~~~P~~~~ 298 (308)
T 2ond_A 289 FMDLYPCSAS 298 (308)
T ss_dssp BTTBCSSCHH
T ss_pred hcccCCCCHH
Confidence 6667787654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-16 Score=142.69 Aligned_cols=173 Identities=20% Similarity=0.152 Sum_probs=137.8
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCC
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADD 86 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~d 86 (479)
..+...+.++...|++++|+.+|.+++.. .|....++..+|.+|...|++++|+.+|++++.+. +++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556778888999999999999999976 35566789999999999999999999999999873 333
Q ss_pred hH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 87 SQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 87 a~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
+. ......++.+|..+|++++|+.+|++++.+...... .-.|....++.++|.+|..+|++
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG------------------PDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC------------------TTCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHHHHcCCH
Confidence 32 233455788999999999999999999998432210 00234456899999999999999
Q ss_pred HHHHHHHHHHHHcC-------------------------------------------------CCCHHHHH-HHHHHHHc
Q 011721 166 ESAERYYMKALSLE-------------------------------------------------SDKNKQCN-LAICLIRL 195 (479)
Q Consensus 166 deA~~~yrKALeLd-------------------------------------------------Pdna~a~n-LG~~L~~l 195 (479)
++|+.+|++++++. |+....+. ||.+|..+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 265 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQ 265 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999972 23334555 99999999
Q ss_pred CCHHHHHH-HHHHHHh
Q 011721 196 NRIAEAKS-LLQAVRA 210 (479)
Q Consensus 196 Gr~dEAi~-l~kAL~l 210 (479)
|++++|+. +.+++.+
T Consensus 266 g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 266 GKLEAAHTLEDCASRN 281 (283)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 99999999 7778764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=139.44 Aligned_cols=132 Identities=19% Similarity=0.140 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|++++..+|++..+++.+|.++...|++++|+..|++++.++|.++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 55 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-------------------------------- 55 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--------------------------------
Confidence 457777778887777888888888888888888888887777777653
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+++++|.+|..+|+|++|+.+|++|++++|+++.++. ||.+|..+|++
T Consensus 56 ------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 56 ------------------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 25677788888888888888888888888888877665 88888888888
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
++|+. +.+++.++|+++.. .....++..+|..+..
T Consensus 106 ~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 106 AEAESGLFLAQELIANXPEF----XELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHCcCCCcc----hHHHHHHHHHHHHHHh
Confidence 88888 77788888776541 1223455555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-15 Score=140.09 Aligned_cols=186 Identities=17% Similarity=0.072 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHHH
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQESL 91 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~l 91 (479)
|.....+...+.+++..+++++|+.+|++++. +++..+++.||.+|.. .+++++|+..|++++..+ ++...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~- 77 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC- 77 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH-
Confidence 33445666778888889999999999999999 5667899999999999 999999999999999885 44333
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhchhH-H-----h-cC----CCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 92 DNVLLELYKR----SKRIEEEIELLKRKLKKTEEV-I-----A-CG----GKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 92 ~~aLg~lY~k----lGr~deAie~lekALkl~p~~-l-----a-~~----~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
..++.+|.. .|++++|+.+|+++++..... . . .. ......|.....+. +...+..++++||
T Consensus 78 -~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~~~~a~~~lg 153 (273)
T 1ouv_A 78 -HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA---CDLNDGDGCTILG 153 (273)
T ss_dssp -HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH---HHTTCHHHHHHHH
T ss_pred -HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH---HhcCcHHHHHHHH
Confidence 346788999 999999999999999873110 0 0 00 11122222222211 1122334555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 157 WAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 157 ~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
.+|.. .+++++|+.+|++|++++ ++.++. ||.+|.. .+++++|+. +.+++...|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 55555 555555555555555542 333333 5555555 555555555 555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=150.90 Aligned_cols=171 Identities=13% Similarity=0.050 Sum_probs=141.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---C---CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh-----HHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAG---D---RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS-----QESLD 92 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~---p---~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da-----~~~l~ 92 (479)
..+..+...|++++|+.+|.+|+... + ....++..+|.+|...|++++|+..+++++.+.+... .....
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34566788999999999999999752 2 2456889999999999999999999999998876532 13344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+.+|.+|..+|++++|+++|++|+.+.+.... .+....++.+||.+|..+|++++|+.+|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------------------DRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55789999999999999999999998543210 1122358999999999999999999999
Q ss_pred HHHHH-----cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 173 MKALS-----LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 173 rKALe-----LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++|++ .+|..+.++. ||.+|..+|++++|+. +.+++.+.+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 99999 7787777776 9999999999999999 89999987653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=132.15 Aligned_cols=138 Identities=19% Similarity=0.196 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|++++|+..|++++..+|.+.... ..++.+|...|++++|+.+|++++.+.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVA--LHLGIAYVKTGAVDRGTELLERSLADAPD---------- 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------
Confidence 345788899999999999999999999999999886543 44678999999999999999999988543
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
+..++.++|.+|...|++++|+.+|++++.++|++...+. +|.++..+|++++|+. +.+++.
T Consensus 75 ----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 75 ----------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 3358899999999999999999999999999999998887 9999999999999999 889999
Q ss_pred hcCCCccc
Q 011721 210 ASSRNEKM 217 (479)
Q Consensus 210 l~P~n~~a 217 (479)
..|++...
T Consensus 139 ~~~~~~~~ 146 (186)
T 3as5_A 139 LRPNEGKV 146 (186)
T ss_dssp HCTTCHHH
T ss_pred cCccchHH
Confidence 99988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-15 Score=138.76 Aligned_cols=188 Identities=14% Similarity=0.095 Sum_probs=152.7
Q ss_pred CCCCcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCCh
Q 011721 16 PAGDSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da 87 (479)
|.....+...+.++.. .+++++|+.+|.+++..+ +..+++.||.+|.. .+++++|+..|++++..+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5555677778888898 999999999999999986 67899999999999 999999999999999874 44
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhHH------h-cC----CCchHHHHhhchhHHHhhhhhHHHHH
Q 011721 88 QESLDNVLLELYKR----SKRIEEEIELLKRKLKKTEEVI------A-CG----GKSTKIARSQGRKTQITLVQELSRIS 152 (479)
Q Consensus 88 ~~~l~~aLg~lY~k----lGr~deAie~lekALkl~p~~l------a-~~----~k~~~~A~~~g~k~~l~L~pe~~~al 152 (479)
... ..++.+|.. .|++++|+.+|++++++.+... . .. ......|.....+. +...++.++
T Consensus 111 ~a~--~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a---~~~~~~~a~ 185 (273)
T 1ouv_A 111 EGC--ASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA---CDLKDSPGC 185 (273)
T ss_dssp HHH--HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHTTCHHHH
T ss_pred cHH--HHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHCCCHHHH
Confidence 433 446789999 9999999999999999864321 0 01 23334454444332 233567899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCC
Q 011721 153 GNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 153 ~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n 214 (479)
++||.+|.. .+++++|+.+|+++++++| +.++. ||.+|.. .+++++|+. +.+++.+.|++
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999 9999999999999999977 66665 9999999 999999999 89999998853
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=141.96 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=134.0
Q ss_pred HHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhc-----CCChH-HHHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINA--------GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLC-----ADDSQ-ESLDNVL 95 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l--------~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~-----P~da~-~~l~~aL 95 (479)
...+++++|+.+|++|+.. .|....++..+|.+|...|++++|+..|++++.+. ++++. ......+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467888888888888872 25567889999999999999999999999999885 44332 3344557
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|..+|++++|+.+|++++.+....... -.|....++.++|.+|..+|++++|+.+|+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGK------------------FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCC------------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999985432210 02345579999999999999999999999999
Q ss_pred HHc--------CCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 176 LSL--------ESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeL--------dPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
+++ .|....++. ||.+|..+|++++|+. +.+++.+.+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999 565566676 9999999999999999 888888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=149.42 Aligned_cols=174 Identities=14% Similarity=0.195 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--hH--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD--SQ--ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d--a~--~~ 90 (479)
-|..++.++...|++++|+.+|.+++.+.+. ...++.++|.+|..+|++++|+.+|++++.+.+.. .. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455667788899999999999999985432 24578899999999999999999999999886532 21 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
....++.+|.. |++++|+.+|++|+.+.+.... ......++.++|.+|..+|+|++|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER--------------------LRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC--------------------hhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33457788988 9999999999999999765210 01123589999999999999999999
Q ss_pred HHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 171 YYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 171 ~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|++++++.|++. ..+. +|.++..+|++++|+. +.+++ ++|....
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999999976552 2445 9999999999999999 89999 9997654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=149.44 Aligned_cols=194 Identities=15% Similarity=0.080 Sum_probs=140.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---Ch-HHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD---DS-QESL 91 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l~P~---da-~~~l 91 (479)
..+...+..++..|++++|+.+|.+++...|.+. .++..+|.++...|++++|+..|++++.+.+. .+ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3456677888889999999999999999888763 57888999999999999999999988776321 11 1333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC--------CCc--------------------hHHHHhh
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG--------GKS--------------------TKIARSQ 136 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~--------~k~--------------------~~~A~~~ 136 (479)
...++.+|...|++++|+.+|++++.+.+... ... ... ...|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45577889999999999999999998876521 000 011 2222222
Q ss_pred chhHHHhh------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHH-HHHHHHHcCCHHHHHH
Q 011721 137 GRKTQITL------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK------QCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 137 g~k~~l~L------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~------a~n-LG~~L~~lGr~dEAi~ 203 (479)
.... +.+ .+....++.++|.+|..+|++++|+.+|++++++.|+... .+. +|.+|..+|++++|+.
T Consensus 170 ~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 170 YEEN-LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHH-HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 2221 111 3344578889999999999999999999999988665432 455 8999999999999999
Q ss_pred -HHHHHHhcCCC
Q 011721 204 -LLQAVRASSRN 214 (479)
Q Consensus 204 -l~kAL~l~P~n 214 (479)
+.+++.+.+..
T Consensus 249 ~~~~al~~~~~~ 260 (406)
T 3sf4_A 249 YYKKTLLLARQL 260 (406)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 88888776654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=132.48 Aligned_cols=133 Identities=15% Similarity=0.105 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 011721 40 SLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKT 119 (479)
Q Consensus 40 ~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~ 119 (479)
..|.+++..+|+...+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 52 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-------------------------------- 52 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--------------------------------
Confidence 356666777777777777777777777777777777777777777653
Q ss_pred hhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 120 EEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 120 p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.+++++|.+|..+|+|++|+.+|++|+.++|+++..+. +|.+|..+|++
T Consensus 53 ------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 53 ------------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred ------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 26677888888888888888888888888888887766 88888888888
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhh
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
++|+. +.+++.++|+++.. .....++..++..+.+.
T Consensus 103 ~~A~~~~~~al~~~p~~~~~----~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 103 DGAESGFYSARALAAAQPAH----EALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHHHHHHHHHHHHTCGGG----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcch----HHHHHHHHHHHHHHHhc
Confidence 88888 77888888876542 12235566666655543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8e-16 Score=149.98 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHC-CChHHHHHHHHHHHHhcCCChH----H
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQL-DRSEEAIEAIKSFRCLCADDSQ----E 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~-GrydEAie~lekal~l~P~da~----~ 89 (479)
.|...+.++...|++++|+.+|.+|+.+.+.. ..++.++|.+|... |++++|+.+|++++.+.|.+.. .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 55677888889999999999999999865432 46789999999996 9999999999999999885421 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++++.+.|..... ......++.++|.+|..+|++++|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-------------------QWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-------------------GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-------------------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 234457899999999999999999999987653210 0012247899999999999999999
Q ss_pred HHHHHHHHcCCCCHHH-----HH-HHHHHH--HcCCHHHHHH-HHHHHHhcCCC
Q 011721 170 RYYMKALSLESDKNKQ-----CN-LAICLI--RLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 170 ~~yrKALeLdPdna~a-----~n-LG~~L~--~lGr~dEAi~-l~kAL~l~P~n 214 (479)
.+|+++++++|++... +. |+.++. ..+++++|+. +.+++.++|.+
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 9999999999997643 23 666664 4578999999 77888887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=150.95 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=144.7
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcC---CCh-HHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCA---DDS-QESL 91 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~----~Al~~LA~vL~~~GrydEAie~lekal~l~P---~da-~~~l 91 (479)
..+...+..++..|++++|+.+|.+++...|++. .++..+|.+|...|++++|+..|++++.+.. ++. ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455677888899999999999999999888865 5788999999999999999999999887731 111 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchh------HHhcC---------CCc-----------------hHHHHhhchh
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEE------VIACG---------GKS-----------------TKIARSQGRK 139 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~------~la~~---------~k~-----------------~~~A~~~g~k 139 (479)
...++.+|...|++++|+.+|++++.+.+. ..... ... ...|.....+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 455778999999999999999999998432 11000 011 2223222222
Q ss_pred HHHhh------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHH-HHHHHHHcCCHHHHHH-HH
Q 011721 140 TQITL------VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK------QCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 140 ~~l~L------~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~------a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
. +.+ .+....++.++|.+|..+|++++|+.+|++++++.|+... .+. +|.+|..+|++++|+. +.
T Consensus 209 a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 209 N-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp H-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred H-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1 111 2344578999999999999999999999999999775432 555 9999999999999999 88
Q ss_pred HHHHhcCCC
Q 011721 206 QAVRASSRN 214 (479)
Q Consensus 206 kAL~l~P~n 214 (479)
+++.+.+..
T Consensus 288 ~al~~~~~~ 296 (411)
T 4a1s_A 288 RTLALAVEL 296 (411)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 898887754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=131.66 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 79 FRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 79 al~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
+..++|+.+..+. .+|..|.+.|+|++|+..|++||+++|. ++.+++++|.+
T Consensus 5 ~a~inP~~a~~~~--~~G~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~~~~ 56 (126)
T 4gco_A 5 LAYINPELAQEEK--NKGNEYFKKGDYPTAMRHYNEAVKRDPE--------------------------NAILYSNRAAC 56 (126)
T ss_dssp --CCCHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHH
T ss_pred HHHHCHHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHhhH
Confidence 3446776655443 3678999999999999999999998554 44599999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+|++++|+..|++|++++|++..++. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 57 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 57 LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999999999999887 9999999999999999 9999999999865
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=158.70 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=130.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-------------HHHHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-------------ESLDNVLLEL 98 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-------------~~l~~aLg~l 98 (479)
.+++++|+..|.+++..+|+...++.++|.+|...|++++|+..|++++.++|.+.. ....+.++.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888999999999999999999999999999999999830 1233446789
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
|..+|++++|+.+|+++|+++|. +..+++++|.+|..+|+|++|+.+|++|+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN--------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998554 3458999999999999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHcCCHHHHHH--HHHHH
Q 011721 179 ESDKNKQCN-LAICLIRLNRIAEAKS--LLQAV 208 (479)
Q Consensus 179 dPdna~a~n-LG~~L~~lGr~dEAi~--l~kAL 208 (479)
+|++..++. ||.++..+|++++|.. +.+.+
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887 9999999999999965 44444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=118.99 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.+++.+|.++...|++++|+..|++++...|.+.... ..++.+|...|++++|+..|++++...|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYKQGDYDEAIEYYQKALELDPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHhcCHHHHHHHHHHHHHHCCC------------
Confidence 3567788888888888888888888888888775443 33567788888888888888888876443
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
...+++++|.++...|++++|+.+|++++.+.|++...+. +|.++..+|++++|+. +.+++..+
T Consensus 68 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 68 --------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp --------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred --------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 2347788888888889999999999999888888887776 8888888899999888 77888887
Q ss_pred CC
Q 011721 212 SR 213 (479)
Q Consensus 212 P~ 213 (479)
|+
T Consensus 134 ~~ 135 (136)
T 2fo7_A 134 PR 135 (136)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-15 Score=141.26 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=138.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcC---CCh-HHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRV----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCA---DDS-QESLDN 93 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~----~~Al~~LA~vL~~~GrydEAie~lekal~l~P---~da-~~~l~~ 93 (479)
....+..++..|++++|+.+|.+++...|++ ..++..+|.++...|++++|+..|++++.+.+ +.. ......
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3456677888999999999999999988876 36778899999999999999999998877632 111 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHH-------hcC--------CCc--------------------hHHHHhhch
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVI-------ACG--------GKS--------------------TKIARSQGR 138 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~l-------a~~--------~k~--------------------~~~A~~~g~ 138 (479)
.++.+|...|++++|+.+|++++.+.+... ... ... ...|.....
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 577889999999999999999998865421 000 011 222222222
Q ss_pred hHH-----HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHH-HHHHHHHcCCHHHHHH-HH
Q 011721 139 KTQ-----ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN------KQCN-LAICLIRLNRIAEAKS-LL 205 (479)
Q Consensus 139 k~~-----l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna------~a~n-LG~~L~~lGr~dEAi~-l~ 205 (479)
... ..-.+....++.++|.+|..+|++++|+.+|++++++.+... ..+. +|.+|..+|++++|+. +.
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 211 011233456889999999999999999999999998865432 2455 9999999999999999 88
Q ss_pred HHHHhcCCC
Q 011721 206 QAVRASSRN 214 (479)
Q Consensus 206 kAL~l~P~n 214 (479)
+++.+.+..
T Consensus 248 ~al~~~~~~ 256 (338)
T 3ro2_A 248 KTLLLARQL 256 (338)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888876654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=144.68 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=125.1
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
-|....++..+|..+...|++++|+..|++++..+|+++.+.+ .++.+|..+|++++|+..|++++..+|..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~la~~~~~~g~~~~A~~~l~~~~~~~p~~------ 184 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGL--LLAETLIALNRSEDAEAVLXTIPLQDQDT------ 184 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHH--HHHHHHHHTTCHHHHHHHHTTSCGGGCSH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHH--HHHHHHHHCCCHHHHHHHHHhCchhhcch------
Confidence 3788889999999999999999999999999999999987654 46789999999999999999998876532
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
...+.+++..+...+++++|+..|+++++++|+++.++. ||.+|..+|++++|+. +.+
T Consensus 185 --------------------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 185 --------------------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp --------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 236677888899999999999999999999999998877 9999999999999999 999
Q ss_pred HHHhcCCCc
Q 011721 207 AVRASSRNE 215 (479)
Q Consensus 207 AL~l~P~n~ 215 (479)
++..+|++.
T Consensus 245 ~l~~~p~~~ 253 (287)
T 3qou_A 245 HLRXDLTAA 253 (287)
T ss_dssp HHHHCTTGG
T ss_pred HHhcccccc
Confidence 999999873
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=142.21 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH------H
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV------I 123 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~------l 123 (479)
...++..+|.++...|++++|+..|++++.+.|.+.. ......++.+|...|++++|+.+|++++.+.+.. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4557889999999999999999999999999999864 2345567899999999999999999999885321 1
Q ss_pred h---------cCCCchHHHHhhchhHHHhhhhh------HHHHHHHHHHHHHHcCC--------------------HHHH
Q 011721 124 A---------CGGKSTKIARSQGRKTQITLVQE------LSRISGNLAWAYLQQND--------------------YESA 168 (479)
Q Consensus 124 a---------~~~k~~~~A~~~g~k~~l~L~pe------~~~al~nLG~ay~~lGd--------------------ydeA 168 (479)
. ........|.....+. +.+.+. ...++.++|.+|..+|+ +++|
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 0 0112333444333322 222222 34689999999999999 9999
Q ss_pred HHHHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 169 ERYYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 169 ~~~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+.+|++++.+. |.....+. +|.+|..+|++++|+. +.+++.+.+...
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999983 22234566 9999999999999999 889998876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-15 Score=133.62 Aligned_cols=131 Identities=16% Similarity=0.155 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.++++|.++...|++++|+..|++++ +| ++. ....+|.+|...|++++|+..|++++.++|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------- 69 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR--ICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------- 69 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------------
Confidence 46778888888888888888888874 33 333 3345678888888888888888888887543
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------HHHH-HHHHHHHcCC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN----------------KQCN-LAICLIRLNR 197 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna----------------~a~n-LG~~L~~lGr 197 (479)
+..+++++|.+|..+|++++|+.+|++++++.|++. .++. +|.+|..+|+
T Consensus 70 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 70 -------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred -------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 334888999999999999999999999999888765 6666 9999999999
Q ss_pred HHHHHH-HHHHHHhcCCCcc
Q 011721 198 IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 198 ~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|+. +.+++.++|++..
T Consensus 137 ~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 137 WKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHHcCccccc
Confidence 999999 8888999887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=140.02 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=134.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 011721 26 KRAQLVEKDPSRAISLFWAAINAGDRVDS------ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVL 95 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~~y~kAL~l~p~~~~------Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aL 95 (479)
...++..+++++|+.+|.+++...+.... .+..+|.++...|++++|+..|++++.+.+.... ....+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34567889999999999999987665443 3446899999999999999999999997654322 2334567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
|.+|..+|++++|+.+|++|+++...... ..+....+++++|.+|..+|+|++|+.+|++|
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHD-------------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSC-------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999987433100 01233468999999999999999999999999
Q ss_pred HHcCCCC------HHHHH-HHHHHHHcC-CHHHHHH-HHHHHHhcC
Q 011721 176 LSLESDK------NKQCN-LAICLIRLN-RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 176 LeLdPdn------a~a~n-LG~~L~~lG-r~dEAi~-l~kAL~l~P 212 (479)
+++.+.. +.++. +|.+|..+| .+++|+. +.+|+.+..
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 9987654 45666 999999999 5799999 888887653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.8e-15 Score=145.48 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------hhHH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE--SLDNVLLELYKRSKRIEEEIELLKRKLKKT------EEVI 123 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~--~l~~aLg~lY~klGr~deAie~lekALkl~------p~~l 123 (479)
....+..+|.++...|++++|+..|++++.+.|++... .....++.+|...|++++|+.+|++++.+. +...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34567789999999999999999999999999998642 344567899999999999999999999984 3211
Q ss_pred h---------cCCCchHHHHhhchhHHHhh------hhhHHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 011721 124 A---------CGGKSTKIARSQGRKTQITL------VQELSRISGNLAWAYLQQND-----------------YESAERY 171 (479)
Q Consensus 124 a---------~~~k~~~~A~~~g~k~~l~L------~pe~~~al~nLG~ay~~lGd-----------------ydeA~~~ 171 (479)
. ........|.....+. +.+ .+....++.++|.+|..+|+ +++|+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERH-LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 1 0112333444433332 222 45566899999999999999 9999999
Q ss_pred HHHHHHcCCC------CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 172 YMKALSLESD------KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 172 yrKALeLdPd------na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
|++++++.+. ....+. +|.+|..+|++++|+. +.+++.+.+..
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 9999997532 224555 9999999999999999 88999887753
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=136.36 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhH------Hh-
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEV------IA- 124 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~------la- 124 (479)
..+...|.++...|++++|+..|++++...|++.. ......++.+|...|++++|+.+|++++.+.+.. ..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45778899999999999999999999999999864 2344567899999999999999999999884321 10
Q ss_pred --------cCCCchHHHHhhchhHHHhhhh------hHHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 011721 125 --------CGGKSTKIARSQGRKTQITLVQ------ELSRISGNLAWAYLQQND--------------------YESAER 170 (479)
Q Consensus 125 --------~~~k~~~~A~~~g~k~~l~L~p------e~~~al~nLG~ay~~lGd--------------------ydeA~~ 170 (479)
........|.....+. +.+.+ ....++.++|.+|..+|+ +++|+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRH-LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 0112233443333322 12222 224689999999999999 999999
Q ss_pred HHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 171 YYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 171 ~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+|++++.+. +.....+. +|.++..+|++++|+. +.+++.+.+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999873 22234555 9999999999999999 88898876643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=135.19 Aligned_cols=142 Identities=8% Similarity=-0.000 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
.+.+++.+|..+...|++++|+..|++++...|.++. ....+.+|.+|..+|++++|+..|+++++++|....
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------ 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------
Confidence 3567899999999999999999999999999998753 223345789999999999999999999999886421
Q ss_pred HHHHhhchhHHHhhhhhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHH-------
Q 011721 131 KIARSQGRKTQITLVQELSRISGNLAWAYLQ------------------QNDYESAERYYMKALSLESDKNKQ------- 185 (479)
Q Consensus 131 ~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~------------------lGdydeA~~~yrKALeLdPdna~a------- 185 (479)
...+++.+|.+|.. +|++++|+..|+++++..|++..+
T Consensus 77 -----------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 77 -----------------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 12356666666654 789999999999999999998633
Q ss_pred -----------HHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 -----------CNLAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 -----------~nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+|.+|..+|++++|+. +.+++...|++..
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 182 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA 182 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence 238999999999999999 9999999999864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-14 Score=136.30 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=133.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HHHHHH
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVD------SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QESLDN 93 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~------~Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~~l~~ 93 (479)
.....++..+++++|+.+|.+++...+... ..++.+|.++...|++++|+..|++++...+... .....+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344567788999999999999999766543 3466799999999999999999999998765431 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.+|..+|++++|+.+|++|+.+...... .. .....+++++|.+|..+|+|++|+.+|+
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~---------------~~~~~~~~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHD----NE---------------EFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cc---------------cchHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 6789999999999999999999977432110 00 0012589999999999999999999999
Q ss_pred HHHHcCCCC------HHHHH-HHHHHHHcCCHHHH-HH-HHHHHHhcC
Q 011721 174 KALSLESDK------NKQCN-LAICLIRLNRIAEA-KS-LLQAVRASS 212 (479)
Q Consensus 174 KALeLdPdn------a~a~n-LG~~L~~lGr~dEA-i~-l~kAL~l~P 212 (479)
+|+++.++. +.++. +|.+|..+|++++| .. +.+|+.+..
T Consensus 221 kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999986542 45555 99999999999999 66 788887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=127.34 Aligned_cols=66 Identities=21% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 151 ISGNLAWA-YLQQNDY--ESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 151 al~nLG~a-y~~lGdy--deA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++|.+ |...|++ ++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 66777777 6677887 8888888888888888777665 8888888888888888 7777888777644
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-14 Score=114.65 Aligned_cols=133 Identities=24% Similarity=0.270 Sum_probs=118.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+...+.++...|++++|+.+|.+++..+|....++..+|.++...|++++|+..|++++...|.+.... ..++.+|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH--HHHHHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999999999886544 346789999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
.|++++|+..|++++.+.|. +..++..+|.+|...|++++|+.+|++++.++|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR--------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999987543 2347899999999999999999999999999997
Q ss_pred C
Q 011721 182 K 182 (479)
Q Consensus 182 n 182 (479)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=144.81 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.+++..|++++|+.+|.+++..+|++..++.++|.+|...|++++|+..|++++.++|++....+ .+|.+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF--FLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHH
Confidence 455667788899999999999999999999999999999999999999999999999999999999876544 467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEV 122 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~ 122 (479)
..+|++++|+..|+++++++|..
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=128.45 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+...+.+++..|++++|+.+|.+++ ++ ...++.++|.+|...|++++|+..|++++.++|+++...+ .+|.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF--QRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH--HHHHHHHH
Confidence 4556778889999999999999986 33 5779999999999999999999999999999999876544 46789999
Q ss_pred cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011721 102 SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD 181 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd 181 (479)
+|++++|+..|++++++.|....... ....+...|....+++++|.+|..+|++++|+.+|+++++++|+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDY----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEEC----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHH----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999998775431100 00001235666789999999999999999999999999999998
Q ss_pred CH
Q 011721 182 KN 183 (479)
Q Consensus 182 na 183 (479)
+.
T Consensus 154 ~~ 155 (213)
T 1hh8_A 154 PR 155 (213)
T ss_dssp GG
T ss_pred cc
Confidence 74
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.4e-14 Score=120.29 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|+..|++++..+|.++.... .++.+|...|++++|+..|++++.++|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG--NRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 356788999999999999999999999999998865543 4668899999999999999999988554
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHcCCHHHHHH-HHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN---LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n---LG~~L~~lGr~dEAi~-l~kAL 208 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++...+. ++..+..+|++++|+. +.+..
T Consensus 80 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 ---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 3348899999999999999999999999999999987653 5555888999999999 66554
Q ss_pred Hh
Q 011721 209 RA 210 (479)
Q Consensus 209 ~l 210 (479)
.+
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=126.94 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=134.4
Q ss_pred CCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 17 AGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD----RSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 17 ~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G----rydEAie~lekal~l~P~da~~~l~ 92 (479)
.....+...+.++...+++++|+.+|++|+..+ ++.++++||.+|.. + ++++|+..|+++.. +.++.+.+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~- 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI- 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH-
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH-
Confidence 334566678888888999999999999999864 57899999999998 7 99999999999854 45555443
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCC
Q 011721 93 NVLLELYKR----SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QND 164 (479)
Q Consensus 93 ~aLg~lY~k----lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGd 164 (479)
.|+.+|.. .+++++|+.+|++|++..+.. ..+.++++||.+|.. .++
T Consensus 90 -~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 90 -VLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp -HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHHHHHTSSSSCC
T ss_pred -HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHHHHcCCCCCCC
Confidence 45678887 889999999999999874310 234589999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-C-----CHHHHHH-HHHHHHhcC
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIRL-N-----RIAEAKS-LLQAVRASS 212 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-G-----r~dEAi~-l~kAL~l~P 212 (479)
+++|+.+|++|+++ |+++.++. ||.+|... | ++++|+. +.+++....
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999 66666665 99999875 3 8999999 888888754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=119.01 Aligned_cols=115 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|..+...|++++|+..|++++.++|+++.... .+|.+|..+|++++|+..|+++++++|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~---------- 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS--NRAAALAKLMSFPEAIADCNKAIEKDPN---------- 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC----------
Confidence 3456777888888888888888888888888887764433 3456677777777777777777766443
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHH-HHHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE------SDKNKQCN-LAICLIR 194 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd------Pdna~a~n-LG~~L~~ 194 (479)
+..+++++|.+|..+|++++|+.+|+++++++ |++..... |+.+...
T Consensus 71 ----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 71 ----------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 23466777777777777777777777777777 66665555 6655543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=150.66 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=132.1
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+.+++...|.....+...+.+++..|++++|+.+|+++++.+|++..++.++|.+|..+|++++|++.|++++.++|+++
T Consensus 12 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 12 LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp ---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 45567777877778888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc---CC
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ---ND 164 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l---Gd 164 (479)
.... .++.+|..+|++++|+..|+++++++|. +..++.++|.+|..+ |+
T Consensus 92 ~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 92 GIAL--WLGHALEDAGQAEAAAAAYTRAHQLLPE--------------------------EPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhhcccc
Confidence 6544 4678999999999999999999998554 345899999999999 99
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HH
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LA 189 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG 189 (479)
+++|+.+|+++++++|++...+. |+
T Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999999876665 66
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=135.38 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=110.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH--------------HHHHHHHH
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ--------------ESLDNVLL 96 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~--------------~~l~~aLg 96 (479)
..+++++|...+.......+.....+..+|.++...|+|++|+..|++++.+.|.++. ......++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3466777777666555555556678899999999999999999999999999998761 12334466
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+.+|++++.+.|. +..+++++|.+|..+|+|++|+.+|++++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKN--------------------------NVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7888888888888888888887543 33478888888888888888888888888
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+++|++..++. |+.++..+++..++..
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887776 8888888888877774
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=158.29 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-------------HHHHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-------------ESLDNVLLELY 99 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-------------~~l~~aLg~lY 99 (479)
+++++|+..|.+++...|+...++.++|.+|..+|+|++|+..|++++.++|.+.. ....+.++.+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888888899999999999999999999999999999998731 22334467889
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
.++|++++|+.+|++||.++|. +..+|+++|.+|..+|+|++|+.+|++|++++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSA--------------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999988554 33588999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
|++..++. |+.++..+|++++|..
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988777 9999999998888887
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-14 Score=146.30 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=150.6
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCCcHHHHHHHHHHHHHCCChHH
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLV-------EKDPS-------RAISLFWAAIN-AGDRVDSALKDMAVVMKQLDRSEE 71 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~-------~gd~e-------eAi~~y~kAL~-l~p~~~~Al~~LA~vL~~~GrydE 71 (479)
.+..++...|.....+...+.++.. .|+++ +|+..|.+|+. ..|+....+..+|.++...|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 4566777788777777766666554 68876 99999999997 799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHH
Q 011721 72 AIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRI 151 (479)
Q Consensus 72 Aie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~a 151 (479)
|+.+|++++.+.|.++.. ....++.++.+.|++++|+..|++|++..|.. ..+
T Consensus 340 A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~--------------------------~~~ 392 (530)
T 2ooe_A 340 VHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------------------HHV 392 (530)
T ss_dssp HHHHHHHHHHSSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC--------------------------THH
T ss_pred HHHHHHHHhCccccCchH-HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc--------------------------hHH
Confidence 999999999999987531 23345677889999999999999999874431 123
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 152 SGNLAWA-YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 152 l~nLG~a-y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+...|.+ +..+|++++|..+|++++++.|+++..+. ++.++..+|++++|.. +.+++...|.++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 4444444 45799999999999999999999998887 9999999999999999 8999998776643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=141.75 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QE 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~ 89 (479)
.+...+.++...|++++|+.+|.+|+...+ ....++.++|.+|...|++++|++.|++++.+.+... ..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 455677888999999999999999998522 2346889999999999999999999999998866432 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++|+.+.+.... .|....++++||.+|..+|++++|+
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--------------------LPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------GGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------------------chhHHHHHHHHHHHHHHCCCHHHHH
Confidence 23445789999999999999999999998443210 1445579999999999999999999
Q ss_pred HHHHHHHHcCC-----CCHHHHH-HHHHHHHcCC---HHHHHHH
Q 011721 170 RYYMKALSLES-----DKNKQCN-LAICLIRLNR---IAEAKSL 204 (479)
Q Consensus 170 ~~yrKALeLdP-----dna~a~n-LG~~L~~lGr---~dEAi~l 204 (479)
.+|++|+++.+ .....+. ||.+|...|+ +++|+.+
T Consensus 285 ~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 285 EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999943 3333445 9999999999 7777773
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=115.43 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
+|....++..+|.++...|++++|+..|++++..+|+++... ..++.+|...|++++|+..|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYF--CNRAAAYSKLGNYAGAVQDCERAICIDPA------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHhhchHHHHHHHHHHHhcCcc-------
Confidence 344567788999999999999999999999999999886544 34678899999999999999999987544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
+..+++.+|.+|..+|++++|+.+|+++++++|++..++. +|.++..+|++
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 3358899999999999999999999999999999998877 99999999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-14 Score=116.48 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
.|....++..+|.++...|++++|+..|++++..+|++.... ..++.+|...|++++|+.+|++++++.|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~a~~~~~~------- 82 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY--SNRAACYTKLLEFQLALKDCEECIQLEPT------- 82 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH--HHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCC-------
Confidence 455678899999999999999999999999999999886544 34567889999999999999999987544
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCC
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNR 197 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr 197 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++..++. ++.++..+|+
T Consensus 83 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -------------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -------------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 3348899999999999999999999999999999988777 9999988774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=139.14 Aligned_cols=193 Identities=14% Similarity=0.017 Sum_probs=139.8
Q ss_pred cCCHHHHHHHHHHHHHc--------CCCcHH---HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh----HHHHHHHHH
Q 011721 32 EKDPSRAISLFWAAINA--------GDRVDS---ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS----QESLDNVLL 96 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l--------~p~~~~---Al~~LA~vL~~~GrydEAie~lekal~l~P~da----~~~l~~aLg 96 (479)
.|++++|..++++|.+. .++... .+...|.+|..+|++++|+.+|.+++.+.+... .......++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777766652 223222 344568899999999999999999998876421 123334467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+.+|++|+.+++.... ......++.++|.+|.. |++++|+.+|++|+
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGT--------------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTC--------------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 8999999999999999999998654210 01123588999999999 99999999999999
Q ss_pred HcCCCC------HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc---h---HHH-H--HHHHHHHHHHHHHHhhh
Q 011721 177 SLESDK------NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM---D---ESY-A--KSFEHASLMLTELESQS 239 (479)
Q Consensus 177 eLdPdn------a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a---~---~~~-~--k~~~rA~eaL~el~~a~ 239 (479)
++.|.. ..+++ ||.+|..+|++++|+. +.+++.+.|++... . ... . ...++..+++..+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 998754 34566 9999999999999999 99999988765421 0 000 1 11245666777777777
Q ss_pred hcCCCCh
Q 011721 240 MLQPTDY 246 (479)
Q Consensus 240 ~~~P~~~ 246 (479)
+.|...
T Consensus 223 -~~p~~~ 228 (307)
T 2ifu_A 223 -SIPGFS 228 (307)
T ss_dssp -TSTTST
T ss_pred -CCCCCC
Confidence 788644
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-16 Score=156.11 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=138.8
Q ss_pred CCHHHHHHHHHH----HHHcCCCcHHHHHHHHHHHH------------HCCChHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011721 33 KDPSRAISLFWA----AINAGDRVDSALKDMAVVMK------------QLDRSEEAIEAIKSFRCLCADDSQESLDNVLL 96 (479)
Q Consensus 33 gd~eeAi~~y~k----AL~l~p~~~~Al~~LA~vL~------------~~GrydEAie~lekal~l~P~da~~~l~~aLg 96 (479)
+.+++|+..+.. ++.+.|.+ +|..+|..+. .++++++|++.|+.++...|+++... ..+|
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~--~~~g 154 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIV--KERG 154 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHH--HHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHH--HHHH
Confidence 467888888888 78888876 5666665543 56788899999998888888765543 4467
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.+|..+|++++|+..|++|+.+.|....+.. . ....+.+....++++||.+|..+|+|++|+.+|++|+
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~---~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSN---E--------EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---H--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCCh---H--------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8999999999999999999999876422110 0 0123345556799999999999999999999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 177 SLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999998887 9999999999999999 99999999998664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=118.04 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++.+||.++..+|+|++|++.|++++.++|+++..+. .+|.+|..+|++++|+..|+++|++.|.....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~--nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------- 78 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYN--NKAAVYFEEKKFAECVQFCEKAVEVGRETRAD------- 78 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--hHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-------
Confidence 457889999999999999999999999999999876544 36789999999999999999999998764310
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
.+....++.++|.+|..+|+|++|+.+|+++|++.|+.
T Consensus 79 ------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 79 ------------YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred ------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 01123589999999999999999999999999999863
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.8e-14 Score=123.34 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++++|.+|..+|+|++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.++|++..
T Consensus 47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 6677888888888888888888888888888877766 8888888888888888 7778888887755
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=121.04 Aligned_cols=166 Identities=13% Similarity=0.045 Sum_probs=125.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHcCC
Q 011721 29 QLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESLDNVLLELYKRSKR 104 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l~~aLg~lY~klGr 104 (479)
.+..|++++|+..+.......+....++..+|.++...|++++|+..|++++.+.... ........++.+|..+|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567999999996555444334677889999999999999999999999998854321 123344557899999999
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD--K 182 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPd--n 182 (479)
+++|+.+|++++.+...... . ......++.++|.+|..+|++++|+.+|++++++.+. +
T Consensus 82 ~~~A~~~~~~al~~~~~~~~----~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPE----D---------------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCC----C---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCc----c---------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999999998432110 0 0012358899999999999999999999999987432 2
Q ss_pred H----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 183 N----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 183 a----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
. ..+. ||.++..+|++++|+. +.+++.+...
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2 2244 9999999999999999 8888877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=129.56 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
...+..+|.++...|++++|+..|++++..+|+++...+ .++.+|...|++++|+..|++++.+.| ..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--------- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKL--AKADCLLETKQFELAQELLATIPLEYQ-DN--------- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHH--HHHHHHHHTTCHHHHHHHHTTCCGGGC-CH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHCCCHHHHHHHHHHhhhccC-Ch---------
Confidence 345788999999999999999999999999999986654 467899999999999999999988765 21
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWA-YLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~a-y~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.++..++.+ +...+...+|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.
T Consensus 74 -----------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 74 -----------------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp -----------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 233334433 23334556789999999999999998877 9999999999999999 899999
Q ss_pred hcCCCc
Q 011721 210 ASSRNE 215 (479)
Q Consensus 210 l~P~n~ 215 (479)
.+|+..
T Consensus 137 ~~p~~~ 142 (176)
T 2r5s_A 137 VNLGAQ 142 (176)
T ss_dssp TCTTTT
T ss_pred hCcccC
Confidence 999753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=127.75 Aligned_cols=111 Identities=8% Similarity=-0.081 Sum_probs=91.9
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
++...|.....+...+.+++..|++++|+.+|++++.++|++..++.++|.+|..+|+|++|+.+|++++.++|+++.
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~-- 105 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT-- 105 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH--
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH--
Confidence 333444444566677888999999999999999999999999999999999999999999999999999999998753
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+++++|.+|..+|++++|+.
T Consensus 106 ------------------------------------------------------------~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 106 ------------------------------------------------------------PVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 55677777777777777777
Q ss_pred HHHHHHHcCCCCH
Q 011721 171 YYMKALSLESDKN 183 (479)
Q Consensus 171 ~yrKALeLdPdna 183 (479)
+|++|+++.|+.+
T Consensus 126 ~~~~al~l~~~~~ 138 (151)
T 3gyz_A 126 CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCHH
Confidence 7777777777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-13 Score=133.88 Aligned_cols=164 Identities=14% Similarity=0.111 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC--Ch--HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGD-------RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--DS--QE 89 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p-------~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--da--~~ 89 (479)
.+...+.++...|+++.|+.+|.+|+...+ ....++.++|.+|...|++++|++.|++++.+.+. +. ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 455667788999999999999999998432 23567889999999999999999999999987542 21 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
.....+|.+|..+|++++|+.+|++++.+.... ..|....++++||.+|..+|++++|+
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------------VPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------------CGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------------CChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 334457899999999999999999999974432 12344569999999999999999999
Q ss_pred HHHHHHHHcCCC-----CHHHHH-HHHHHHHcCC---HHHHHHHH
Q 011721 170 RYYMKALSLESD-----KNKQCN-LAICLIRLNR---IAEAKSLL 205 (479)
Q Consensus 170 ~~yrKALeLdPd-----na~a~n-LG~~L~~lGr---~dEAi~l~ 205 (479)
.+|++|+++.+. ....+. |+.++...|+ +.+|+.+.
T Consensus 282 ~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 282 QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999544 334455 8989988898 77777733
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=129.83 Aligned_cols=171 Identities=11% Similarity=-0.015 Sum_probs=137.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRVD-----SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVL 95 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-----~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aL 95 (479)
.+.+++..|++++|+.++.+++...|... .++..+|.++...|++++|+..+++++.+.|.... ......+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45567789999999999999999765432 36788999999999999999999999988765322 2223457
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|..+|++++|+.+|++++.+.+..... -.|....++.++|.+|..+|++++|+.+|+++
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLE------------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 789999999999999999999986542110 00223457899999999999999999999999
Q ss_pred HHcCCCC-----HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 176 LSLESDK-----NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 176 LeLdPdn-----a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+++.+.. ...+. +|.++...|++++|+. +.+++.+.+.
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 9998863 24455 9999999999999999 8888877543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-14 Score=136.99 Aligned_cols=106 Identities=14% Similarity=0.035 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCc
Q 011721 50 DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKS 129 (479)
Q Consensus 50 p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~ 129 (479)
|....++..+|.++...|++++|+..|++++..+|+++.... .+|.+|..+|++++|+..|+++++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT--NRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 456778999999999999999999999999999999876544 4678999999999999999999988554
Q ss_pred hHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 130 TKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 130 ~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
+..+++++|.+|..+|++++|+.+|+++++++|+++
T Consensus 71 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 71 ------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 345899999999999999999999999999999874
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=123.99 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|..+...|+|++|+..|++||+++|...... .+...|.+..+|.|+|.++..+|+|++|+.+|++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--------------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--------------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--------------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--------------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555555555555555555554411000 0112344556999999999999999999999999
Q ss_pred HHHc-------CCCCHHHH----H-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 175 ALSL-------ESDKNKQC----N-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 175 ALeL-------dPdna~a~----n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
||++ +|++..++ + +|.+|..+|++++|+. |.+++.++|++..+
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 9999 99999887 7 9999999999999999 99999999988653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=106.21 Aligned_cols=116 Identities=23% Similarity=0.267 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|++.|++++..+|.+.... ..++.+|...|++++|+..|++++.+.|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 75 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAYYKQGDYDEAIEYYQKALELDPN----------- 75 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHhCCc-----------
Confidence 56788999999999999999999999999999876543 34678899999999999999999887543
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
+..++.++|.+|...|++++|+.+|++++.++|+++.++. ||.++..+|
T Consensus 76 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 ---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred ---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 3347899999999999999999999999999999998877 999987765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=122.38 Aligned_cols=115 Identities=11% Similarity=0.001 Sum_probs=96.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS 87 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da 87 (479)
+.+++...|.....+...+.+++..|++++|+..|.+++..+|++..+++++|.+|...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44555556665566777788899999999999999999999999999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHH
Q 011721 88 QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYES 167 (479)
Q Consensus 88 ~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyde 167 (479)
. +++++|.+|..+|++++
T Consensus 90 ~--------------------------------------------------------------~~~~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 90 R--------------------------------------------------------------FPFHAAECLLQXGELAE 107 (148)
T ss_dssp H--------------------------------------------------------------HHHHHHHHHHHTTCHHH
T ss_pred h--------------------------------------------------------------HHHHHHHHHHHcCCHHH
Confidence 3 55677777777778888
Q ss_pred HHHHHHHHHHcCCCCHH
Q 011721 168 AERYYMKALSLESDKNK 184 (479)
Q Consensus 168 A~~~yrKALeLdPdna~ 184 (479)
|+.+|+++++++|+++.
T Consensus 108 A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 108 AESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHCcCCCc
Confidence 88888888777777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=113.42 Aligned_cols=130 Identities=10% Similarity=-0.051 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..|++++.++|.++...+ .+|.+|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY--RRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999876544 4678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRIS--GNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al--~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.+|++++|+.+|++++.+.|... .++ ..++..+..+|++++|+.+|+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~--------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDK--------------------------DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999866532 244 45566688999999999999998765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.4e-14 Score=120.65 Aligned_cols=78 Identities=9% Similarity=-0.052 Sum_probs=67.2
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ 88 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~ 88 (479)
++...|.....+...+..++..|++++|+.+|.+++..+|++..++..+|.+|...|++++|+..|++++.++|+++.
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 344444444456667788899999999999999999999999999999999999999999999999999999998753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=114.82 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
++....+++.+|.++...|+|++|+..|++++.++|+++..++ .++.+|..+|++++|+..|++++.++|.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~~p~------- 77 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLS--NRAAAYSASGQHEKAAEDAELATVVDPK------- 77 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHH--HHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Confidence 3446778999999999999999999999999999999876544 4678999999999999999999998654
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC 191 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~ 191 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++...+. ++.+
T Consensus 78 -------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 78 -------------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred -------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3458999999999999999999999999999999987554 5543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-13 Score=113.92 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
++....++..+|.++...|++++|+..|++++.++|+++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------------------------------- 44 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------------------------------------- 44 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------------------------------------
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH----------------------------------------
Confidence 4455666677777777777777777777777777666543
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQ 206 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~k 206 (479)
+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+
T Consensus 45 ----------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 45 ----------------------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp ----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455555555555555555555555555555555444 5555555555555555 555
Q ss_pred HHHhcCC
Q 011721 207 AVRASSR 213 (479)
Q Consensus 207 AL~l~P~ 213 (479)
++.++|+
T Consensus 103 a~~~~p~ 109 (137)
T 3q49_B 103 AYSLAKE 109 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHChh
Confidence 5555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-13 Score=115.13 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
-||.+|.+.|+|++|+.+|++||+++|. ++.+++++|.+|..+|+|++|+.+|+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------------------------~~~~~~nlg~~~~~~~~~~~A~~~~~ 66 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS--------------------------NITFYNNKAAVYFEEKKFAECVQFCE 66 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 3688999999999999999999998654 34589999999999999999999999
Q ss_pred HHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 174 KALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 174 KALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+|++++|++. .++. ||.++..+|++++|+. +.++|...|+
T Consensus 67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999998763 3555 9999999999999999 9999998885
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=110.45 Aligned_cols=92 Identities=17% Similarity=0.065 Sum_probs=85.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..|...|++++|+..|++++.++|. ++.+++++|.+|..+|+|++|+.+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE--------------------------DARGYSNRAAALAKLMSFPEAIADCN 62 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4678899999999999999999998554 34599999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
++++++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 63 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999998887 9999999999999999 99999999
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=119.81 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCL--------CADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l--------~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
..++..+|..+...|+|++|+..|.+++.+ +|.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~----------------------------------- 55 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW----------------------------------- 55 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------------------------
Confidence 356778888888888888888888888877 3332210
Q ss_pred cCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 125 CGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 125 ~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..+.|....+++++|.+|..+|+|++|+.+|++||+++|+++.++. +|.+|..+|++++|+.
T Consensus 56 -----------------~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 56 -----------------VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp -----------------HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 0123445568899999999999999999999999999999998877 9999999999999999
Q ss_pred -HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHh
Q 011721 204 -LLQAVRASSRNEKMDESYAKSFEHASLMLTELES 237 (479)
Q Consensus 204 -l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~ 237 (479)
+.+++.++|++... ....+.++...+.....
T Consensus 119 ~~~~al~l~p~~~~~---~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 119 DLKLLLRNHPAAASV---VAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHHHCGGGHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHH---HHHHHHHHHHHHHHHHH
Confidence 88899999987521 12334445555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=116.78 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=123.6
Q ss_pred HHhhCCCC-CcHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-
Q 011721 11 VIHKVPAG-DSPYVRAKRAQLVEKDPSRAISLFWAAIN------AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL- 82 (479)
Q Consensus 11 ~v~k~p~~-~~pyv~a~~~~L~~gd~eeAi~~y~kAL~------l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l- 82 (479)
.+...|.. ...+...+.++...|++++|+.+|.+++. ..+....++.++|.++...|++++|+..|++++.+
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 17 ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44455533 34556677888999999999999999998 33445678899999999999999999999999887
Q ss_pred --cCCCh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH
Q 011721 83 --CADDS--QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA 158 (479)
Q Consensus 83 --~P~da--~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a 158 (479)
.+++. .......++.+|..+|++++|+.+|++++.+.+.... ......++.++|.+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------------------QVAIACAFRGLGDL 156 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHHHH
Confidence 45442 2334455789999999999999999999988543210 01122478999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 011721 159 YLQQNDYESAERYYMKALSLESDKNKQCNLAICLI 193 (479)
Q Consensus 159 y~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~ 193 (479)
|..+|++++|+.+|++|+++.....+.+.++.++.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 191 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMT 191 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999998655443333444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=103.43 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..++..+|.++...|++++|+..|++++..+|.++... ..++.+|...|++++|+..|++++.+.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY--SNRSAAYAKKGDYQKAYEDGCKTVDLKPD----------- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH--HHHHHHHHhhccHHHHHHHHHHHHHhCcc-----------
Confidence 45788899999999999999999999999999876543 34567888889999999998888887543
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..++.++|.+|..+|++++|+.+|+++++++|+++..+. ++.+.
T Consensus 71 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3347888999999999999999999999999999887766 77664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=108.26 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--H--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCC
Q 011721 53 DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--Q--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGK 128 (479)
Q Consensus 53 ~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da--~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k 128 (479)
..++..+|.++...|++++|+..|++++.+.+... . ......++.+|..+|++++|+.+|++++.+.+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 35678899999999999999999999988765421 1 123445788999999999999999999998654211
Q ss_pred chHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH-HHHHHHHcCCHHHH
Q 011721 129 STKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK------NKQCN-LAICLIRLNRIAEA 201 (479)
Q Consensus 129 ~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn------a~a~n-LG~~L~~lGr~dEA 201 (479)
.+....++.++|.+|..+|++++|+.+|++++++.+.. ...+. ||.++..+|++++|
T Consensus 85 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 85 ----------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 01123588999999999999999999999999884322 23455 99999999999999
Q ss_pred HH-HHHHHHhcCC
Q 011721 202 KS-LLQAVRASSR 213 (479)
Q Consensus 202 i~-l~kAL~l~P~ 213 (479)
+. +.+++.+...
T Consensus 149 ~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 149 MHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 99 8888887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=114.06 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..|.+.|++++|+..|.+++.+.+...... .|.++.
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------------~~~~~~----------------------- 54 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILRE------------------KPGEPE----------------------- 54 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS------------------CTTSHH-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccC------------------CCCHHH-----------------------
Confidence 467889999999999999999999855432110 111111
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
...++|.+..++. +|.||..+|++++|+. +.++|.++|++..+.. ......++..+++..+.+++.++|.+.
T Consensus 55 -~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 55 -WVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 1345677777776 9999999999999999 9999999999987533 122344667777788888888899876
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=114.41 Aligned_cols=96 Identities=13% Similarity=-0.031 Sum_probs=82.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.++...|++++|+..|+++++++|. +..++++||.++..+|++++|+.+|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~ 75 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE--------------------------REEAWRSLGLTQAENEKDGLAIIALN 75 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567888999999999999999988554 44599999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
+|++++|+++.++. ||.+|..+|++++|+. +.+++.++|++.
T Consensus 76 ~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999998887 9999999999999999 999999999764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=119.96 Aligned_cols=145 Identities=13% Similarity=-0.000 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC----CHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK----RIEEEIEL 111 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG----r~deAie~ 111 (479)
.+|+.+|+++.+. .++.+++.||.+|...+++++|+..|+++... .++.+.+ .|+.+|.. | ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~--~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALA--LLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHH--HHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHH--HHHHHHHc-CCCCCCHHHHHHH
Confidence 3588999999986 46889999999999999999999999999875 4454443 46677887 7 99999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC--CHHH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESD--KNKQ 185 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPd--na~a 185 (479)
|++|++. .++.++++||.+|.. .+++++|+.+|++|+++.|. ++.+
T Consensus 76 ~~~A~~~----------------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 76 AEKAVEA----------------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHT----------------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHC----------------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 9999654 234589999999998 99999999999999999994 5777
Q ss_pred HH-HHHHHHH----cCCHHHHHH-HHHHHHhcCCCcc
Q 011721 186 CN-LAICLIR----LNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 186 ~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++ ||.+|.. .+++++|+. +.+++.+ |+++.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~ 163 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY 163 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence 76 9999999 899999999 8889888 55544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-14 Score=150.66 Aligned_cols=134 Identities=12% Similarity=0.047 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.++..+|.++..+|++++|++.|+++++++|+++.... .++.+|..+|++++|+..|++|++++|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~--~lg~~~~~~g~~~~A~~~~~~al~l~p~------------ 72 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYG--NRSLAYLRTECYGYALGDATRAIELDKK------------ 72 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence 34566777788888888888888888888888765443 3567788888888888888888887543
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH--HHHcCCHHHHHH-HH----
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC--LIRLNRIAEAKS-LL---- 205 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~--L~~lGr~dEAi~-l~---- 205 (479)
++.+++++|.+|..+|++++|+.+|++|++++|++..++. ++.+ +..+|++++|+. +.
T Consensus 73 --------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~ 138 (477)
T 1wao_1 73 --------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 138 (477)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCS
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 3348889999999999999999999999999999887766 8877 888899999999 77
Q ss_pred -------HHHHhcCCCc
Q 011721 206 -------QAVRASSRNE 215 (479)
Q Consensus 206 -------kAL~l~P~n~ 215 (479)
+++.++|+..
T Consensus 139 ~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 139 VVDSLDIESMTIEDEYS 155 (477)
T ss_dssp TTTCCTTSSCCCCTTCC
T ss_pred hHhhhhhhhcccccccc
Confidence 6777777653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=113.23 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
++.+|.++...|++++|+..|++++..+|+++..++ .+|.+|...|++++|+..|+++++++|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~--~lg~~~~~~g~~~~A~~~~~~al~l~P~-------------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWR--SLGLTQAENEKDGLAIIALNHARMLDPK-------------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------
Confidence 566778888888888888888888888888766544 3567778888888888888888877544
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
+..++++||.+|..+|++++|+.+|+++++++|++..
T Consensus 84 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 ------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 3348889999999999999999999999999998753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=105.74 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|++++|+..|++++..+|.++... ..++.+|...|++++|+.+|++++.+.|.... .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~-- 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI--TNQAAVYFEKGDYNKCRELCEKAIEVGRENRE----D-- 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT----C--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHhccHHHHHHHHHHHHhhccccch----h--
Confidence 356788999999999999999999999999999886544 34678899999999999999999998765311 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
.+....+++++|.+|..+|++++|+.+|++++++.| ++.... ++.++..++
T Consensus 75 -------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 -------------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 011145899999999999999999999999999999 465555 877766544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=121.69 Aligned_cols=150 Identities=15% Similarity=0.032 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.....+......|++++|.+.+.......+..+.. ...+|.+|...|++++|+..|++++.+.|........ ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~ 79 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFD--IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ----IL 79 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----HH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----hH
Confidence 44556777788889999988876544443333322 2346789999999999999999999987763311100 00
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcC
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P 212 (479)
. -....-...+++++|.+|..+|+|++|+.+|+++++++|++..++. +|.+|..+|++++|+. +.+++.++|
T Consensus 80 ~------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 80 L------DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred H------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 0 0000011368999999999999999999999999999999998887 9999999999999999 999999999
Q ss_pred CCcc
Q 011721 213 RNEK 216 (479)
Q Consensus 213 ~n~~ 216 (479)
++..
T Consensus 154 ~~~~ 157 (198)
T 2fbn_A 154 NNLD 157 (198)
T ss_dssp TCHH
T ss_pred CcHH
Confidence 8755
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=108.63 Aligned_cols=119 Identities=12% Similarity=-0.010 Sum_probs=78.8
Q ss_pred cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC
Q 011721 48 AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG 126 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~ 126 (479)
.++.....++.+|.++...|++++|+..|++++..+|++.. ......++.+|...|++++|+..|++++.+.|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----
Confidence 34566777888888888888888888888888888886511 122233455666666666666666666665332
Q ss_pred CCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 127 GKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 127 ~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
+..+++++|.+|..+|++++|+.+|+++++++|++..++. ++.+.
T Consensus 98 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 ---------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 2236667777777777777777777777777777666554 55443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=105.76 Aligned_cols=118 Identities=9% Similarity=0.038 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 011721 19 DSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL 98 (479)
Q Consensus 19 ~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l 98 (479)
...+...+.+++..+++++|+.+|.+++..+|++..++..+|.++...|++++|+..|++++..+|.++...+ .++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT--RKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH--HHHHH
Confidence 4456677788899999999999999999999999999999999999999999999999999999999876544 46789
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
|...|++++|+.+|++++.+.|.. ..++..+|.++..+|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~--------------------------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC--------------------------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG--------------------------THHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc--------------------------hHHHHHHHHHHHHhcC
Confidence 999999999999999999986543 3488899999988774
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-13 Score=122.24 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC-------ChH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD-------DSQ---ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~-------da~---~~l~~aLg~lY~klGr~deAie~lekALkl~p~~l 123 (479)
..+.++|..+...|+|++|+..|++++.++|+ +.. ......++.++..+|++++|+..|++||+++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~- 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR- 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc-
Confidence 45778999999999999999999999999998 322 1233446788999999999999999999983221
Q ss_pred hcCCCchHHHHhhchhHHHhhhhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHH
Q 011721 124 ACGGKSTKIARSQGRKTQITLVQELSRIS----GNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAIC 191 (479)
Q Consensus 124 a~~~k~~~~A~~~g~k~~l~L~pe~~~al----~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~ 191 (479)
++++|++..+| +++|.+|..+|+|++|+.+|++|++++|++..... |..+
T Consensus 91 ------------------~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 ------------------GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp ------------------CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred ------------------ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 24566777788 99999999999999999999999999999875544 4443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=105.42 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---
Q 011721 146 QELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES--- 220 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~--- 220 (479)
+..+..++.+|.++...|+|++|+.+|++++.++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+...
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 344568999999999999999999999999999999998887 9999999999999999 99999999998764221
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 221 YAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 221 ~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
.....++..+++..+.+++...|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 112223344444444445544554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-12 Score=105.31 Aligned_cols=110 Identities=9% Similarity=-0.003 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
+++.+|.++...|++++|+..|++++..+|++... .....+|.+|...|++++|+..|++++..+|...
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---------- 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---------- 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc----------
Confidence 56788899999999999999999999988887521 1223356777778888888888887777755421
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
..+.+++++|.+|..+|++++|+.+|+++++..|++..+..
T Consensus 74 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 74 -------------KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp -------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred -------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 11347788888888888888888888888888888775543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=107.78 Aligned_cols=141 Identities=15% Similarity=0.081 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC--h--HHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD--S--QES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d--a--~~~ 90 (479)
.+...+.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+..|++++.+.+.. . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 34556677888999999999999999854322 2478899999999999999999999998876542 1 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
....++.+|...|++++|+.+|++++.+.+.... .+....++.++|.+|..+|++++|+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--------------------RIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--------------------hHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 3445788999999999999999999998543210 12234588999999999999999999
Q ss_pred HHHHHHHcCCC
Q 011721 171 YYMKALSLESD 181 (479)
Q Consensus 171 ~yrKALeLdPd 181 (479)
+|++++++...
T Consensus 151 ~~~~a~~~~~~ 161 (164)
T 3ro3_A 151 FAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999988654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=124.75 Aligned_cols=181 Identities=12% Similarity=-0.013 Sum_probs=133.3
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGD--RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p--~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+.+.+...+.....+..++.++...|++++|+.++.+.|..+| ....++..++.+|..+|+.+.|.+.++++...+|+
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 3444444333334445667778888999999999988888876 77788888888889999999999999888888883
Q ss_pred ----ChHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 86 ----DSQESLDNVLLELYKRSK--RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 86 ----da~~~l~~aLg~lY~klG--r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+-...+.++.+.++...| ++.+|...|+++...+|... ....+++ ++
T Consensus 169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~------------------------~~~lLln---~~ 221 (310)
T 3mv2_B 169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK------------------------TQLGLLN---LH 221 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH------------------------HHHHHHH---HH
T ss_pred ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc------------------------cHHHHHH---HH
Confidence 112223333344455555 88888888888776654310 1124444 89
Q ss_pred HHcCCHHHHHHHHHHHHHc----------CCCCHHHH-HHHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 160 LQQNDYESAERYYMKALSL----------ESDKNKQC-NLAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeL----------dPdna~a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++|++++|+..+++++++ +|+++.++ |+..+...+|+ +|.. +.++...+|+++..
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 9999999999999988887 58899887 68888888998 8888 77889999999873
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-11 Score=122.60 Aligned_cols=186 Identities=13% Similarity=0.044 Sum_probs=133.4
Q ss_pred HHHHHhhCCCCCcH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHH
Q 011721 8 LFHVIHKVPAGDSP-----YVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAI 76 (479)
Q Consensus 8 ~~~~v~k~p~~~~p-----yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~l 76 (479)
+..++...|.++.. +...+.++...|++++|+.+|.+++...+.. ..++.++|.++..+|++++|+..|
T Consensus 37 ~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 116 (373)
T 1hz4_A 37 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 116 (373)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566665532 3344567788999999999999999853321 244788999999999999999999
Q ss_pred HHHHHhcCCC-----h-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHH
Q 011721 77 KSFRCLCADD-----S-QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSR 150 (479)
Q Consensus 77 ekal~l~P~d-----a-~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~ 150 (479)
++++.+.+.. + .......++.+|...|++++|+.+|++++.+.+.... +....
T Consensus 117 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~ 175 (373)
T 1hz4_A 117 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---------------------QQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---------------------GGGHH
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---------------------HHHHH
Confidence 9998876321 1 2333445788999999999999999999998654210 11224
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C-HHH--H--H-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESD--K-NKQ--C--N-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPd--n-a~a--~--n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
++.++|.++...|++++|+.+|++++.+.+. . ... . . ++.++...|++++|.. +.+++...|.+
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 7788888888889999999998888887432 2 111 1 1 3455778888888888 77777666543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=137.49 Aligned_cols=155 Identities=12% Similarity=0.048 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr----------ydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
-.++|+.++.++|..+|++..+++..+.++...|+ +++|++.+.+++..+|++..++.+.. .++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~--w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC--WLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH--HHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcc
Confidence 35788999999999999999999999999999998 99999999999999999988776654 5788899
Q ss_pred --CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 011721 104 --RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYYMKALSLES 180 (479)
Q Consensus 104 --r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~yrKALeLdP 180 (479)
++++|++.+.++++++|+. ..+|++.|+++...| .+++|++++.++++++|
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N--------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 122 EPNWARELELCARFLEADERN--------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHHhhcccc--------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 7799999999999986653 349999999999999 99999999999999999
Q ss_pred CCHHHHH-HHHHHHHc--------------CCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRL--------------NRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~l--------------Gr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..+++ +|.++..+ +++++|+. +.+|+.++|++..
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 9999998 99999885 66899999 8899999999865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-12 Score=130.79 Aligned_cols=181 Identities=10% Similarity=-0.010 Sum_probs=147.9
Q ss_pred HHHHHh-hCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 8 LFHVIH-KVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVD-SALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 8 ~~~~v~-k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~-~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
+..++. ..|.....+...+.++...|++++|...|++++..+|.+. .++..+|.++.+.|++++|+++|++++...|.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 344454 3565555566667777888999999999999999999875 68999999999999999999999999999888
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
.....+..++ ..|...|++++|+.+|+++++..|. ++.++.++|.++..+|++
T Consensus 389 ~~~~~~~~a~-~~~~~~~~~~~A~~~~e~al~~~p~--------------------------~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 389 RHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGD--------------------------IPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp CTHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHTTTTCH
T ss_pred chHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHhCCCH
Confidence 7655443332 2345799999999999999998554 345899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH----HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 166 ESAERYYMKALSLESDKNK----QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 166 deA~~~yrKALeLdPdna~----a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
++|..+|++|+...|.++. .+. .+......|+.+.+.. ..+++...|++.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9999999999999876653 565 6777888999999999 788888888543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=101.51 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+.+++..+++++|+.+|.+++...|+...++..+|.++...|++++|+..|++++..+|+++... ..++.+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY--GRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH--HHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999999999999999987554 44678999
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY 165 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy 165 (479)
..|++++|+..|++++.+.|. +..++..+|.++..+|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD--------------------------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHHhcC
Confidence 999999999999999998554 334889999999999886
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-11 Score=124.25 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=144.1
Q ss_pred CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHH
Q 011721 19 DSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~ 90 (479)
...+...+.++.. .+++++|+.+|++++..+ +..+++.||.+|.. .+++++|+..|+++... .++.+.
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~ 294 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence 3456677777775 899999999999999864 46789999999999 99999999999998765 344433
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhchhHH----h--c-C-C--CchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 91 LDNVLLELYKRS-----KRIEEEIELLKRKLKKTEEVI----A--C-G-G--KSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 91 l~~aLg~lY~kl-----Gr~deAie~lekALkl~p~~l----a--~-~-~--k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
..|+.+|... +++++|+..|+++++..+... + + . + .....|....++. +...++.++++|
T Consensus 295 --~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a---~~~~~~~a~~~L 369 (490)
T 2xm6_A 295 --YYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKA---AAKGEKAAQFNL 369 (490)
T ss_dssp --HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH---HHTTCHHHHHHH
T ss_pred --HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH---HHCCCHHHHHHH
Confidence 3467888888 999999999999998743211 0 0 0 1 1223444333332 234667899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcCC
Q 011721 156 AWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 156 G~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P~ 213 (479)
|.+|.. .+++++|+.+|++|++.. ++.++. ||.+|.. .+++++|+. +.+++...|+
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999 999999999999999874 577776 9999999 899999999 9999999954
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-13 Score=134.74 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=126.8
Q ss_pred HHHHHHhhCCCCCcHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------------HHHHH
Q 011721 7 ELFHVIHKVPAGDSPYVRA-------KRAQLVEKDPSRAISLFWAAINAGDRVD---------------------SALKD 58 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a-------~~~~L~~gd~eeAi~~y~kAL~l~p~~~---------------------~Al~~ 58 (479)
-|..++...|.-+...... ..+....++..+++..+.+++.+.|... +....
T Consensus 28 ~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~La 107 (282)
T 4f3v_A 28 LFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMG 107 (282)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHH
T ss_pred HHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHH
Confidence 3555666667666665544 4455555556677777777777655432 33444
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhch
Q 011721 59 MAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGR 138 (479)
Q Consensus 59 LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~ 138 (479)
++.+|...|+|++|++.|..++...|++. ..+.++.+|.+.|++++|+.+|++++...+..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~---------------- 168 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF---------------- 168 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----------------
Confidence 67778888888888888877777677654 23445567888888888888887555431000
Q ss_pred hHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 139 KTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE--SD-KNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 139 k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd--Pd-na~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
....++++||.++..+|++++|+.+|++++... |. ..++.. +|.|+..+|+.++|.. +.+++..+|+
T Consensus 169 --------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 169 --------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp --------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred --------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 012488999999999999999999999998654 65 445555 9999999999999999 8888999996
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=123.85 Aligned_cols=162 Identities=11% Similarity=0.064 Sum_probs=134.2
Q ss_pred HHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhcCCChHHHHHHHHH--HHHHHc--
Q 011721 30 LVEKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEAIKSFRCLCADDSQESLDNVLL--ELYKRS-- 102 (479)
Q Consensus 30 L~~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~lekal~l~P~da~~~l~~aLg--~lY~kl-- 102 (479)
+..+. .++|+.++.++|.++|++..+++..+.++...| ++++|++.+..++..+|++..+..+.... .+....
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 34454 478999999999999999999999999999999 99999999999999999998776554321 122556
Q ss_pred -CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcC
Q 011721 103 -KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE--SAERYYMKALSLE 179 (479)
Q Consensus 103 -Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd--eA~~~yrKALeLd 179 (479)
+++++++.++.+++.++|+.. .+|++.++++..+|.++ ++++++.++++++
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny--------------------------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNH--------------------------HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCH--------------------------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--------------------------HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 899999999999999866543 48888888888888888 8888888888888
Q ss_pred CCCHHHHH-HHHHHHHcCC------HHHHHH-HHHHHHhcCCCccc
Q 011721 180 SDKNKQCN-LAICLIRLNR------IAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr------~dEAi~-l~kAL~l~P~n~~a 217 (479)
|.|..+++ .+.++..+|+ +++++. +.++|..+|+|..+
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 88888877 8888888877 888888 77888888887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-11 Score=118.44 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=107.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHH---HhcCCChHH--HHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFR---CLCADDSQE--SLDN 93 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal---~l~P~da~~--~l~~ 93 (479)
.+.++...|++++|+.+|.+|+...+.. ..++.++|.+|..+|++++|+.+|++++ ...|++... ...+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4455667789999999999999754332 5689999999999999999999999998 556665422 3445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHH-HHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESA-ERYY 172 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA-~~~y 172 (479)
.+|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|..+|++++| ..+|
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~--------------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINS--------------------MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--------------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 5789999999999999999999998643111 011235899999999999999999 8889
Q ss_pred HHHHHcC
Q 011721 173 MKALSLE 179 (479)
Q Consensus 173 rKALeLd 179 (479)
++|+.+.
T Consensus 261 ~~Al~~~ 267 (293)
T 2qfc_A 261 KKASFFF 267 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=103.58 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
+|++..++..+|.++...|++++|+..|++++..+|.+..... .++.+|..+|++++|+..|++++++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWL--MKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666666665543221 2333444444444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=134.46 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
...++..+|.++...|+|++|+..|++++.+.|++.. +...|++.+++..+. .
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----------~~~~~~~~~~~~~l~----~------------- 230 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM----------FQLYGKYQDMALAVK----N------------- 230 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH----------HTCCHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh----------hhhcccHHHHHHHHH----H-------------
Confidence 3567888999999999999999999999999987531 112222232222110 0
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVR 209 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~ 209 (479)
.+++++|.+|+.+|+|++|+.+|++||+++|++..+++ +|.+|..+|++++|+. +.+++.
T Consensus 231 ------------------~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 231 ------------------PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 14455555555555555555555555555555554444 5555555555555555 444555
Q ss_pred hcCCCc
Q 011721 210 ASSRNE 215 (479)
Q Consensus 210 l~P~n~ 215 (479)
++|++.
T Consensus 293 l~p~~~ 298 (338)
T 2if4_A 293 YAPDDK 298 (338)
T ss_dssp ------
T ss_pred HCCCCH
Confidence 555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=108.46 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
.+|++++|+.+|++++++.+. +|++..++++||.+|..+|+|++|+.+|+++++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-----------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-----------------------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHcCCC-----------------------CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 368889999999999887211 233456999999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++.++. ||.+|..+|++++|+. +.+++...|++..
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 9998887 9999999999999999 9999999998754
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-11 Score=123.15 Aligned_cols=187 Identities=11% Similarity=0.041 Sum_probs=154.0
Q ss_pred HcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 31 VEKDP-SRAISLFWAAINAGDRVDSALKDMAVVMKQLDR----------SEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 31 ~~gd~-eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr----------ydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..|++ ++|+.++.++|..+|++..+++..+.++...++ +++++..+..++..+|++..++.+.. .++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~--wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC--WLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH--HHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH--HHH
Confidence 34555 479999999999999999999999999988776 78999999999999999988776544 567
Q ss_pred HHcCC--HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 011721 100 KRSKR--IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND-YESAERYYMKAL 176 (479)
Q Consensus 100 ~klGr--~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd-ydeA~~~yrKAL 176 (479)
...|+ ++++++++.++++++|.. ..+|++.++++...|. ++++++++.+++
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprN--------------------------y~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERN--------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTC--------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 78884 899999999999986654 3499999999999999 699999999999
Q ss_pred HcCCCCHHHHH-HHHHHHHc--------------CCHHHHHH-HHHHHHhcCCCccchH--HH-H-----------HHHH
Q 011721 177 SLESDKNKQCN-LAICLIRL--------------NRIAEAKS-LLQAVRASSRNEKMDE--SY-A-----------KSFE 226 (479)
Q Consensus 177 eLdPdna~a~n-LG~~L~~l--------------Gr~dEAi~-l~kAL~l~P~n~~a~~--~~-~-----------k~~~ 226 (479)
+++|.|..+++ ++.++..+ +.+++++. +.+++..+|+|..+-. .. + ...+
T Consensus 173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 99999999988 99988887 56899999 8899999999876421 11 1 1224
Q ss_pred HHHHHHHHHHhhhhcCCCC
Q 011721 227 HASLMLTELESQSMLQPTD 245 (479)
Q Consensus 227 rA~eaL~el~~a~~~~P~~ 245 (479)
...+.+..+...+.+.|+.
T Consensus 253 ~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 253 VLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhCccc
Confidence 5667777777777888874
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.5e-13 Score=138.36 Aligned_cols=169 Identities=17% Similarity=0.112 Sum_probs=126.8
Q ss_pred CHHHHHHHHHH----HHHcCCCcHHHHHHHHHHH------------HHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 011721 34 DPSRAISLFWA----AINAGDRVDSALKDMAVVM------------KQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLE 97 (479)
Q Consensus 34 d~eeAi~~y~k----AL~l~p~~~~Al~~LA~vL------------~~~GrydEAie~lekal~l~P~da~~~l~~aLg~ 97 (479)
.++.|+..+.+ +|.++|.+ +|.+.|... ...+++++|+..|+.++...|+.+... ..+|.
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~--~~~G~ 276 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIV--KEKGT 276 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHH--HHHHH
Confidence 45666666666 56667754 444444322 245678889988888888887765443 34678
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 98 LYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 98 lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
+|.++|+|++|+..|++|+.+.|....+. .. ....+.+....+|+++|.+|+.+|+|++|+.+|++||+
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---~~--------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLS---EK--------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCC---HH--------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCC---hH--------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999977642110 00 01123444567999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
++|+++.++. +|.+|..+|++++|+. +.+++.++|++..+
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999998887 9999999999999999 99999999998763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-12 Score=130.84 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.++..+|.++...|+|++|+..|++++.+.|... +.....+++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------------~~~~~~~~~----------------- 266 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------------AAAEDADGA----------------- 266 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------HHSCHHHHG-----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------cccChHHHH-----------------
Confidence 4578889999999999999999998887544210 000011111
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.+.|....+++++|.+|..+|+|++|+.+|++||+++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 267 ---------~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 267 ---------KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp ---------GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 122334456666677777777777777777777777776666655 6777777777777766 66666666
Q ss_pred CCCcc
Q 011721 212 SRNEK 216 (479)
Q Consensus 212 P~n~~ 216 (479)
|++..
T Consensus 338 P~~~~ 342 (370)
T 1ihg_A 338 PEDKA 342 (370)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 66543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=122.60 Aligned_cols=176 Identities=6% Similarity=-0.038 Sum_probs=145.8
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHH----HHC---CChHHHHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK--DPSRAISLFWAAINAGDRVDSALKDMAVVM----KQL---DRSEEAIEAIKS 78 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g--d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL----~~~---GrydEAie~lek 78 (479)
..+++...|+.-......+.+....+ ++++|+.++.++|..+|++..+++..+.++ ... ++++++++.+.+
T Consensus 56 t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~ 135 (306)
T 3dra_A 56 TELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA 135 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 34668888887666666666666667 999999999999999999999999999999 777 899999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 79 FRCLCADDSQESLDNVLLELYKRSKRIE--EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 79 al~l~P~da~~~l~~aLg~lY~klGr~d--eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++..+|++..+..+.. .++...|+++ ++++++.++++++|... .++.+.+
T Consensus 136 ~l~~~pkny~aW~~R~--~vl~~l~~~~~~~EL~~~~~~i~~d~~N~--------------------------sAW~~R~ 187 (306)
T 3dra_A 136 MLSSDPKNHHVWSYRK--WLVDTFDLHNDAKELSFVDKVIDTDLKNN--------------------------SAWSHRF 187 (306)
T ss_dssp HHHHCTTCHHHHHHHH--HHHHHTTCTTCHHHHHHHHHHHHHCTTCH--------------------------HHHHHHH
T ss_pred HHHhCCCCHHHHHHHH--HHHHHhcccChHHHHHHHHHHHHhCCCCH--------------------------HHHHHHH
Confidence 9999999987766543 5678899998 99999999999866533 4888888
Q ss_pred HHHHHcCC------HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH--HHHHHHhc
Q 011721 157 WAYLQQND------YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS--LLQAVRAS 211 (479)
Q Consensus 157 ~ay~~lGd------ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~--l~kAL~l~ 211 (479)
.++...|. ++++++++.++|.++|+|..+++ ++.++...|+..+++. +.+.+.++
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 88888887 89999999999999999998887 8888888888666554 44455554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-11 Score=120.79 Aligned_cols=181 Identities=6% Similarity=-0.070 Sum_probs=145.7
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--hHHHHHHH
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLVEKD----------PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR--SEEAIEAI 76 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~~gd----------~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr--ydEAie~l 76 (479)
.+++...|..-......+.+....+. +++++.++..+|..+|++..+++..+.++...|+ ++++++.+
T Consensus 54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 133 (331)
T 3dss_A 54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 133 (331)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence 45566777654443333333322222 6899999999999999999999999999999995 89999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 77 KSFRCLCADDSQESLDNVLLELYKRSKR-IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 77 ekal~l~P~da~~~l~~aLg~lY~klGr-~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
.+++..+|.+..++.+.. .+....|+ ++++++++.+++.++|.. ..+|+++
T Consensus 134 ~k~l~~dprNy~AW~~R~--~vl~~l~~~~~eel~~~~~~I~~~p~N--------------------------~SAW~~R 185 (331)
T 3dss_A 134 ARFLEADERNFHCWDYRR--FVAAQAAVAPAEELAFTDSLITRNFSN--------------------------YSSWHYR 185 (331)
T ss_dssp HHHHHHCTTCHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHCSCC--------------------------HHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHH--HHHHHhCcCHHHHHHHHHHHHHHCCCC--------------------------HHHHHHH
Confidence 999999999987765543 56778898 699999999999886553 3489999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc-----------CCHHHHHH-HHHHH
Q 011721 156 AWAYLQQ--------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRL-----------NRIAEAKS-LLQAV 208 (479)
Q Consensus 156 G~ay~~l--------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l-----------Gr~dEAi~-l~kAL 208 (479)
+.++..+ +.++++++++.+++.++|+|..+++ +..++... +.+++++. +.+.+
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 9998887 5699999999999999999999887 65555544 46899999 99999
Q ss_pred HhcCCCccc
Q 011721 209 RASSRNEKM 217 (479)
Q Consensus 209 ~l~P~n~~a 217 (479)
.++|++.+.
T Consensus 266 e~~pd~~w~ 274 (331)
T 3dss_A 266 ELEPENKWC 274 (331)
T ss_dssp HHCTTCHHH
T ss_pred hhCcccchH
Confidence 999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=101.03 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=87.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
++.++...|++++|+..|++++..+|... ....+++++|.+|..+|+|++|+.+|++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 64 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGV-----------------------YTPNALYWLGESYYATRNFQLAEAQFRD 64 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSST-----------------------THHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCc-----------------------ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 56789999999999999999999876532 1225889999999999999999999999
Q ss_pred HHHcCCCC---HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 175 ALSLESDK---NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 175 ALeLdPdn---a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++|++ +.++. +|.+|..+|++++|+. +.+++...|++..
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 99999999 77776 9999999999999999 8899999998754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=108.71 Aligned_cols=102 Identities=13% Similarity=0.117 Sum_probs=65.4
Q ss_pred cCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHH
Q 011721 32 EKDPSRAISLFWAAINA---GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEE 108 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l---~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deA 108 (479)
.|++++|+.+|.+++.. +|++..++.+||.+|..+|++++|+..|++++.++|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------- 61 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--------------------- 61 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---------------------
Confidence 35566666666666666 355555666666666666666666666666666555542
Q ss_pred HHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-
Q 011721 109 IELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN- 187 (479)
Q Consensus 109 ie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n- 187 (479)
.+++++|.+|..+|++++|+.+|++++++.|+++....
T Consensus 62 -----------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 62 -----------------------------------------ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred -----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 36777888888888888888888888888888876654
Q ss_pred HHHHHHHc
Q 011721 188 LAICLIRL 195 (479)
Q Consensus 188 LG~~L~~l 195 (479)
...+....
T Consensus 101 ~~ai~~~~ 108 (117)
T 3k9i_A 101 KQAILFYA 108 (117)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 43333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=122.40 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-----------------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC 83 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-----------------~~Al~~LA~vL~~~GrydEAie~lekal~l~ 83 (479)
.-+..+...+..|++++|+..|.++++..++. ..++..||.+|..+|++++|++.|.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34444556778999999999999999976652 2478999999999999999999999998876
Q ss_pred CCChH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH
Q 011721 84 ADDSQ----ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY 159 (479)
Q Consensus 84 P~da~----~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay 159 (479)
+.... ..+...++.++...|++++|+.++++++.+.+.... ......++.+||.+|
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--------------------VFLKHSLSIKLATLH 145 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--------------------CSSHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--------------------cHHHHHHHHHHHHHH
Confidence 65432 233445677888899999999999999988544211 111235889999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 160 LQQNDYESAERYYMKALSLE------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 160 ~~lGdydeA~~~yrKALeLd------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
..+|+|++|+.++++++... +.....+. +|.+|..+|++++|.. +.+++...+.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999862 22235566 9999999999999999 8888876553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=130.59 Aligned_cols=187 Identities=12% Similarity=0.025 Sum_probs=148.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHHCCChHHHHHHHHHHHHhcCCChHH--------------
Q 011721 31 VEKDPSRAISLFWAAINAGDRVDSALKDM-------AVVMKQLDRSEEAIEAIKSFRCLCADDSQE-------------- 89 (479)
Q Consensus 31 ~~gd~eeAi~~y~kAL~l~p~~~~Al~~L-------A~vL~~~GrydEAie~lekal~l~P~da~~-------------- 89 (479)
..+|+..|...|.+++.++|...+++.++ +.++...+++.+++..+++.+.+.|.....
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57999999999999999999999999999 899999999999999999999988864321
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 90 -----SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 90 -----~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+.+.++.+|...|+|++|++.|..++.. .|++. +++.+|.++++.|+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------------------------~p~~~-~~~~~a~l~~~~~r 150 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------------------------GSEHL-VAWMKAVVYGAAER 150 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------------------------TCHHH-HHHHHHHHHHHTTC
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------------CCchH-HHHHHHHHHHHcCC
Confidence 23344668899999999999999876654 34455 88999999999999
Q ss_pred HHHHHHHHHHHHHcC-CCC-HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc--CC-CccchH---HHHHHHHHHHHHHHH
Q 011721 165 YESAERYYMKALSLE-SDK-NKQCN-LAICLIRLNRIAEAKS-LLQAVRAS--SR-NEKMDE---SYAKSFEHASLMLTE 234 (479)
Q Consensus 165 ydeA~~~yrKALeLd-Pdn-a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~--P~-n~~a~~---~~~k~~~rA~eaL~e 234 (479)
|++|+.+|++++... |.. ..++. ||.++..+|++++|+. +.+++... |. ...+.. ..+...++..++...
T Consensus 151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888764 222 23444 9999999999999999 77777432 32 111111 234555667777777
Q ss_pred HHhhhhcCCC
Q 011721 235 LESQSMLQPT 244 (479)
Q Consensus 235 l~~a~~~~P~ 244 (479)
+++.+..+|.
T Consensus 231 l~~a~a~~P~ 240 (282)
T 4f3v_A 231 LEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhcCCc
Confidence 7777778997
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-11 Score=97.32 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..++.+|...|++++|+..|++++.+.|. +..++.++|.+|..+|++++|+.+|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH--------------------------NHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------------cHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34678899999999999999999988554 3458999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++++++|+++..+. +|.++..+|++++|+. +.+++..+|++..
T Consensus 62 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999998877 9999999999999999 8899999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=120.58 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=139.9
Q ss_pred CcHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHH
Q 011721 19 DSPYVRAKRAQLV----EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 19 ~~pyv~a~~~~L~----~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~ 90 (479)
...+...+.+++. .+++++|+.+|++++.. .+..+++.||.+|.. .+++++|+..|+++.... ++...
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 3455667777777 89999999999999987 457899999999999 999999999999998764 44443
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhchh-HH---h---cC----CCchHHHHhhchhHHHhhhhhHHHHHHHH
Q 011721 91 LDNVLLELYKR----SKRIEEEIELLKRKLKKTEE-VI---A---CG----GKSTKIARSQGRKTQITLVQELSRISGNL 155 (479)
Q Consensus 91 l~~aLg~lY~k----lGr~deAie~lekALkl~p~-~l---a---~~----~k~~~~A~~~g~k~~l~L~pe~~~al~nL 155 (479)
..|+.+|.. .+++++|+..|+++++.... .. + .. ......|...+++. +...++.++++|
T Consensus 115 --~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a---~~~~~~~a~~~L 189 (490)
T 2xm6_A 115 --QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA---AEQGNVWSCNQL 189 (490)
T ss_dssp --HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---HHTTCHHHHHHH
T ss_pred --HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---HHCCCHHHHHHH
Confidence 346788998 89999999999999886321 10 0 01 12334454444332 234567899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhc
Q 011721 156 AWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 156 G~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~ 211 (479)
|.+|.. .+++++|+.+|+++++. +++.++. ||.+|.. .+++++|+. +.+++...
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999998 89999999999999876 4566666 9999997 889999999 77777653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=116.98 Aligned_cols=135 Identities=10% Similarity=0.004 Sum_probs=106.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---CCChH--HHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC---ADDSQ--ESLDN 93 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~---P~da~--~~l~~ 93 (479)
.+.+++..+++++|+.+|.+|+...+.. ..++.++|.+|..+|++++|+.+|++++... |.+.. .....
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 4555666789999999999999853321 3478999999999999999999999998642 23321 22345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-CHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-DYESAERYY 172 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-dydeA~~~y 172 (479)
.+|.+|..+|++++|+.+|++|+++.+.... ......+++++|.+|..+| .+++|+.+|
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINS--------------------MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--------------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 5789999999999999999999998654321 0112358999999999999 579999999
Q ss_pred HHHHHcC
Q 011721 173 MKALSLE 179 (479)
Q Consensus 173 rKALeLd 179 (479)
++|+.+.
T Consensus 261 ~~Al~i~ 267 (293)
T 3u3w_A 261 KKASFFF 267 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=136.00 Aligned_cols=128 Identities=10% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+++..|++++|+.+|++|++.+|++..++.++|.+|..+|++++|++.|+++++++|+++.... .+|.+|..+|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~--~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY--RRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH--HHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCHH
Confidence 34567899999999999999999999999999999999999999999999999999999876654 4678999999999
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWA--YLQQNDYESAERYYM----------- 173 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~a--y~~lGdydeA~~~yr----------- 173 (479)
+|+..|++++++.|.. ..++.++|.+ +..+|++++|++.|+
T Consensus 92 eA~~~~~~al~~~p~~--------------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 92 AALRDYETVVKVKPHD--------------------------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHHHSTTC--------------------------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 9999999999986543 2377888888 899999999999999
Q ss_pred HHHHcCCCC
Q 011721 174 KALSLESDK 182 (479)
Q Consensus 174 KALeLdPdn 182 (479)
++++++|+.
T Consensus 146 ~al~~~~~~ 154 (477)
T 1wao_1 146 ESMTIEDEY 154 (477)
T ss_dssp SSCCCCTTC
T ss_pred hhccccccc
Confidence 999998875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-11 Score=95.36 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 011721 20 SPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELY 99 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY 99 (479)
..+...+.++...+++++|+.+|.+++...|....++..+|.++...|++++|+..|++++..+|.+.... ..++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH--HHHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999987544 3467899
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN 163 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG 163 (479)
...|++++|+..|++++.+.|. +..++.++|.++..+|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN--------------------------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHhcc
Confidence 9999999999999999988554 3347888888887655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-12 Score=116.29 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
+.+++|+..|++++.++|++..++.++|.++...++++.++..++ .+++|+..|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------~~~eAi~~l 69 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh--------------------------HHHHHHHHH
Confidence 457888888888888888888888888888888887765555321 267888888
Q ss_pred HHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCC
Q 011721 113 KRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-----------DYESAERYYMKALSLESD 181 (479)
Q Consensus 113 ekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-----------dydeA~~~yrKALeLdPd 181 (479)
++||+++|. +.++|++||.+|..+| +|++|+.+|++|++++|+
T Consensus 70 e~AL~ldP~--------------------------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 70 EEALLIDPK--------------------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCTT--------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCcC--------------------------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 888887544 4458999999999885 899999999999999999
Q ss_pred CHHHHH
Q 011721 182 KNKQCN 187 (479)
Q Consensus 182 na~a~n 187 (479)
+..+..
T Consensus 124 ~~~y~~ 129 (158)
T 1zu2_A 124 NTHYLK 129 (158)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 875443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-11 Score=105.91 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=111.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHcCCH--H
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLEL-YKRSKRI--E 106 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~l-Y~klGr~--d 106 (479)
+..+++++|+.+|.+++..+|++..++..+|.+|...|++++|+.+|++++.++|+++.... .++.+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA--ALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHH--HHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHhcCCcchH
Confidence 45688999999999999999999999999999999999999999999999999999876544 35667 8899999 9
Q ss_pred HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 011721 107 EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQC 186 (479)
Q Consensus 107 eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~ 186 (479)
+|+..|++++.++|. +..+++++|.+|..+|++++|+.+|+++++++|++....
T Consensus 99 ~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSN--------------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999998554 335899999999999999999999999999999986443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-11 Score=99.48 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..++.+|...|++++|+..|++++++.|... ....+++++|.+|..+|+|++|+.+|
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQ-----------------------DQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----------------------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----------------------HHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4467889999999999999999999865421 11358999999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 173 MKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++++.++|++..++. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 999999999998877 9999999999999999 8999999998743
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-11 Score=122.61 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC----CChHHHHHHHHHHHHhcCCChHHHHH
Q 011721 20 SPYVRAKRAQLVEK---DPSRAISLFWAAINAGDRVDSALKDMAVVMKQL----DRSEEAIEAIKSFRCLCADDSQESLD 92 (479)
Q Consensus 20 ~pyv~a~~~~L~~g---d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~----GrydEAie~lekal~l~P~da~~~l~ 92 (479)
..+...+.++...| ++++|+.+|++++..++....++++||.+|... +++++|+..|+++. |+++.+.+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 35555556666666 666666666666666666666566666666544 56666666666655 555544433
Q ss_pred HHHHHH-H--HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-----C
Q 011721 93 NVLLEL-Y--KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-----D 164 (479)
Q Consensus 93 ~aLg~l-Y--~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-----d 164 (479)
|+.+ | ...|++++|+.+|+++++. .++.++++||.+|. .| +
T Consensus 254 --Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------------------------g~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 254 --LAQLLYDFPELGDVEQMMKYLDNGRAA----------------------------DQPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp --HHHHHHHSGGGCCHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHH-HCSSSCCC
T ss_pred --HHHHHHhCCCCCCHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHH-cCCCCCCC
Confidence 3334 3 3466666666666666654 23345666666665 34 6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHH
Q 011721 165 YESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVR 209 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~ 209 (479)
+++|+.+|++|+ |+++.++. ||.+|.. ..++++|+. +.++..
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 666666666666 55665544 6665555 236666666 555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=119.72 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=139.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-C-CHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLD-RSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-K-RIEEEI 109 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G-rydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-G-r~deAi 109 (479)
...++|+.++.++|.++|++..+++..+.++...| .++++++.+..++..+|++..+..... .++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~--wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL--LLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH--HHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHhcCCChHHHH
Confidence 45578999999999999999999999999999999 599999999999999999987765543 455666 7 899999
Q ss_pred HHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCC
Q 011721 110 ELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYE--------SAERYYMKALSLESD 181 (479)
Q Consensus 110 e~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdyd--------eA~~~yrKALeLdPd 181 (479)
+++.++|.++|+. ..+++..++++...|.++ ++++++.++++++|.
T Consensus 146 ~~~~k~L~~dpkN--------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 146 EYIHGSLLPDPKN--------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHTSSCTTC--------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCC--------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 9999999886553 349999999999999998 999999999999999
Q ss_pred CHHHHH-HHHHHHHcCC-------HHHHHH-HHHHHHhcCCCcc
Q 011721 182 KNKQCN-LAICLIRLNR-------IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr-------~dEAi~-l~kAL~l~P~n~~ 216 (479)
|..+++ .+.++..+++ +++++. +.+++.++|+|..
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S 243 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS 243 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 999998 9999999987 799999 8899999999865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-12 Score=126.16 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...+..++..+++++|+.+|.+|+...|++. .+...|++++++..+.. ...+.++.+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~~-----------~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVKN-----------PCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHHT-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 344556677788999999999999999988654 23345566666654421 12334677888
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
++|++++|+.+|+++|+++|. +..+++++|.+|..+|+|++|+.+|++|++++|
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK--------------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 899999999999998887543 335889999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHH-HcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 181 DKNKQCN-LAICLI-RLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 181 dna~a~n-LG~~L~-~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++..++. |+.+.. ..+..+++.. +.+++...|++..
T Consensus 296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9998877 888844 4567777777 8888999887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-11 Score=96.74 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+|.+|...|++++|+.+|++++.+.|. +..+++++|.+|..+|++++|+.+|
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~ 61 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPT--------------------------NMTYITNQAAVYFEKGDYNKCRELC 61 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44678899999999999999999998554 3358899999999999999999999
Q ss_pred HHHHHcCCCC-------HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 173 MKALSLESDK-------NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 173 rKALeLdPdn-------a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
++++.+.|++ ...+. +|.+|..+|++++|+. +.+++.+.|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999877 76666 9999999999999999 8899999884
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=95.45 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=64.4
Q ss_pred CCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 16 PAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
|.....+...+.+++..|++++|+.+|.+++..+|....++..+|.++...|++++|++.|++++..+|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4555566777888899999999999999999999999999999999999999999999999999999998
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=113.02 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCH----------HHHH
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDY----------ESAE 169 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdy----------deA~ 169 (479)
.+.+++++|+..|+++++++| +++++|+++|.++..++++ ++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--------------------------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--------------------------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------------------------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH
Confidence 356778999999999998854 4556999999999999875 5999
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcC-----------CHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLN-----------RIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lG-----------r~dEAi~-l~kAL~l~P~n~~ 216 (479)
..|++||+++|++..+++ ||.+|..+| ++++|+. |.+|+.++|++..
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999887 999999885 8999999 9999999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=122.74 Aligned_cols=134 Identities=8% Similarity=-0.018 Sum_probs=108.9
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHh-----cCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l-----~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
+.+..+..+|+|++|+..|++++++ .|+++. +...+.|+.+|..+|+|++|+.+++++|++.....+.+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----- 388 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN----- 388 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-----
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-----
Confidence 4455678899999999999999875 456654 23345578999999999999999999999966543311
Q ss_pred HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHH-HHHHHHHcCCHHHHH
Q 011721 132 IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNK---QCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~---a~n-LG~~L~~lGr~dEAi 202 (479)
.|+....++|||.+|..+|+|++|+.+|++|+++ .|+++. ..+ |+.++.+++++++|.
T Consensus 389 -------------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 389 -------------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445568999999999999999999999999986 788874 345 999999999999999
Q ss_pred H-HHHHHH
Q 011721 203 S-LLQAVR 209 (479)
Q Consensus 203 ~-l~kAL~ 209 (479)
. +.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 9 777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-10 Score=116.58 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|.+|...|++++|+..|++|+++.+... +....+
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------------------------------------------~~~~~~ 263 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------------------------------------------AAAEDA 263 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------------------------HHSCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------------------------------------------cccChH
Confidence 467889999999999999999998743210 122356
Q ss_pred HHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 174 KALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 174 KALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
++..++|.+..+++ ||.+|..+|++++|+. +.+++.++|++..+... .....++..+++..+.+++.++|.+..
T Consensus 264 ~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 66778888888777 9999999999999999 99999999998775331 223345566777778888888998775
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.6e-11 Score=127.05 Aligned_cols=178 Identities=7% Similarity=-0.041 Sum_probs=149.2
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--ChHHHHHH
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKD----------PSRAISLFWAAINAGDRVDSALKDMAVVMKQLD--RSEEAIEA 75 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd----------~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~G--rydEAie~ 75 (479)
..+++...|.....+...+.+....++ +++|+.++.++|..+|++..+++..+.++...| ++++|++.
T Consensus 52 ~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~ 131 (567)
T 1dce_A 52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL 131 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH
Confidence 456788888876666666656555555 999999999999999999999999999999999 67999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHH
Q 011721 76 IKSFRCLCADDSQESLDNVLLELYKRSK-RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGN 154 (479)
Q Consensus 76 lekal~l~P~da~~~l~~aLg~lY~klG-r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~n 154 (479)
+.++++++|++..++.+. +.++...| .++++++++.++|+++|. +..+|++
T Consensus 132 ~~k~l~~d~~N~~aW~~R--~~~l~~l~~~~~~el~~~~~~I~~~p~--------------------------n~saW~~ 183 (567)
T 1dce_A 132 CARFLEADERNFHCWDYR--RFVAAQAAVAPAEELAFTDSLITRNFS--------------------------NYSSWHY 183 (567)
T ss_dssp HHHHHHHCTTCHHHHHHH--HHHHHHTCCCHHHHHHHHHTTTTTTCC--------------------------CHHHHHH
T ss_pred HHHHHhhccccccHHHHH--HHHHHHcCCChHHHHHHHHHHHHHCCC--------------------------CccHHHH
Confidence 999999999998776554 35678889 999999999999887554 4459999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH------------HHH-HHH
Q 011721 155 LAWAYLQQ--------------NDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE------------AKS-LLQ 206 (479)
Q Consensus 155 LG~ay~~l--------------GdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE------------Ai~-l~k 206 (479)
+|.++..+ +.+++|++++.+|+.++|++..+++ ++.++...+++++ |+. |.+
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~ 263 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSR 263 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecc
Confidence 99999885 6789999999999999999999988 9999999998766 455 556
Q ss_pred HHHhcCC
Q 011721 207 AVRASSR 213 (479)
Q Consensus 207 AL~l~P~ 213 (479)
++.++|.
T Consensus 264 ~i~~~~~ 270 (567)
T 1dce_A 264 PLTVGSR 270 (567)
T ss_dssp EECTTBT
T ss_pred ceecccc
Confidence 6666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-10 Score=95.07 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
.|+++.+++++|.+|..+|++++|+.+|+++++++|++..++. ||.+|..+|++++|+. +.+++.+.|.+.
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3445569999999999999999999999999999999998887 9999999999999999 999999988543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=93.46 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH-HHHHHHHcCCHHHHHH
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDK------NKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdn------a~a~n-LG~~L~~lGr~dEAi~ 203 (479)
+++++|.+|..+|+|++|+.+|+++++++|++ ..++. +|.++..+|++++|+.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 56667777777777777777777777777776 54444 6777666666655554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-10 Score=117.25 Aligned_cols=133 Identities=11% Similarity=-0.060 Sum_probs=107.9
Q ss_pred HHHcCCHHHHHHHHHHHHH-----cCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHH
Q 011721 29 QLVEKDPSRAISLFWAAIN-----AGDRV---DSALKDMAVVMKQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNV 94 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~-----l~p~~---~~Al~~LA~vL~~~GrydEAie~lekal~l-----~P~da~~-~l~~a 94 (479)
+..+|++++|+.+|++++. +++++ ..++.+||.+|..+|+|++|+.++++++.+ .|+++.. ...+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467999999999999997 45554 467889999999999999999999998865 4677653 23344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
||.+|..+|++++|+.+|++|+++.....+.+ .|...+++.+|+.++..++.|++|+..|++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~------------------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPS------------------HPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999965543211 234456789999999999999999999999
Q ss_pred HHHcC
Q 011721 175 ALSLE 179 (479)
Q Consensus 175 ALeLd 179 (479)
+.+-.
T Consensus 461 ~~~~~ 465 (490)
T 3n71_A 461 MREAA 465 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97644
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-10 Score=92.12 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 37 RAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 37 eAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
.|+..|.+++..+|++..+++.+|.+|...|++++|+..|++++.++|+++...+ .++.+|..+|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK--WLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677777777777777777777777777777777777777777777776543322 23344444444444444444444
Q ss_pred Hhc
Q 011721 117 KKT 119 (479)
Q Consensus 117 kl~ 119 (479)
.+.
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-09 Score=109.68 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHH----HHHHhcCCChHHHHH
Q 011721 20 SPYVRAKRAQLVEKDP---SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIK----SFRCLCADDSQESLD 92 (479)
Q Consensus 20 ~pyv~a~~~~L~~gd~---eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~le----kal~l~P~da~~~l~ 92 (479)
..+...+.++...+.. .+|+..+.++...+. ..+++.||.+|...+.+++++.... .+...+|. + .
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a--~ 179 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---C--Y 179 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---H--H
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---H--H
Confidence 3445555555443322 334444444443322 3455666666666664444444322 22222222 2 2
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhchhHHh--------c-CC----CchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 93 NVLLELYKRSK---RIEEEIELLKRKLKKTEEVIA--------C-GG----KSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 93 ~aLg~lY~klG---r~deAie~lekALkl~p~~la--------~-~~----k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
+.|+.+|...| ++++|+..|++++...+.... + .+ .....|...+++. . |.++.++++||
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a---a-~g~~~a~~~Lg 255 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI---A-PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---G-GGSTHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH---c-CCCHHHHHHHH
Confidence 23445566666 666666666666655432110 0 00 2223333333332 2 56677999999
Q ss_pred HH-H--HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC-----CHHHHHH-HHHHHHhcCCCccc
Q 011721 157 WA-Y--LQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN-----RIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 157 ~a-y--~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG-----r~dEAi~-l~kAL~l~P~n~~a 217 (479)
.+ | ...|++++|+.+|++|++.+ ++.+++ ||.+|. .| ++++|+. +.+++ ++++.+
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A 320 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA 320 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence 99 5 57899999999999999654 787776 999998 66 9999999 77877 777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-10 Score=110.16 Aligned_cols=170 Identities=9% Similarity=0.009 Sum_probs=133.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC----hHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD----SQESL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d----a~~~l 91 (479)
+...+.++...|++++|+.+|.+++...+.. ..++..+|.++...|++++|+..+++++...+.. ....+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567788899999999999999998743332 1345678999999999999999999988764422 23445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
...|+.+|..+|+|++|+.++++++........ .+...+++.++|.+|..+|+|++|..+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDD--------------------KPSLVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC--------------------STHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhccc--------------------chhHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 566889999999999999999999886332110 133446899999999999999999999
Q ss_pred HHHHHHcCCC---CH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 172 YMKALSLESD---KN----KQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 172 yrKALeLdPd---na----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
|++++.+.+. .. ..+. +|.++...|+|++|.. +.+++...
T Consensus 198 ~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 198 LTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999988532 22 3345 8999999999999999 88887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=92.76 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+++.+++++|.+|..+|+|++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.+.|.+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 5778889999999999999999999999999999999998887 9999999999999999 9999999875443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=84.39 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 151 ISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 151 al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
+++++|.+|..+|++++|+.+|+++++++|++..++. ||.++..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 6677888888888888888888888888888877766 888777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-09 Score=107.06 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=137.0
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC-C-ChHHHHHHHHHHHHhcC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEK-DPSRAISLFWAAINAGDRVDSALKDMAVVMKQL-D-RSEEAIEAIKSFRCLCA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~g-d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~-G-rydEAie~lekal~l~P 84 (479)
..+++...|..-......+.+....+ ++++++.++.++|..+|++..+++..+.++... + +++++++.+.+++..+|
T Consensus 77 t~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp 156 (349)
T 3q7a_A 77 TEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP 156 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Confidence 45678888887666555555665666 699999999999999999999999999999988 8 99999999999999999
Q ss_pred CChHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 85 DDSQESLDNVLLELYKRSKRIE--------EEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~d--------eAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
++..+..+.. .++...|+++ ++++++.++|+++|. +..++++++
T Consensus 157 kNy~AW~~R~--wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--------------------------N~SAW~~R~ 208 (349)
T 3q7a_A 157 KNYHTWAYLH--WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--------------------------NNSAWGWRW 208 (349)
T ss_dssp TCHHHHHHHH--HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHH
T ss_pred CCHHHHHHHH--HHHHHhccccccchhhHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHH
Confidence 9987765543 4556666666 899999988888654 334999999
Q ss_pred HHHHHcCC-------HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCH
Q 011721 157 WAYLQQND-------YESAERYYMKALSLESDKNKQCN-LAICLIRLNRI 198 (479)
Q Consensus 157 ~ay~~lGd-------ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~ 198 (479)
.++..++. ++++++++.+++.++|+|..+++ +..++...|+-
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 99999997 79999999999999999999987 88888887764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=118.91 Aligned_cols=92 Identities=17% Similarity=0.049 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------------CCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLES-------------------------DKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdP-------------------------dna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
..|..+|.+|.++|+|++|++++++|....+ .+++.+. ++..|...|.|++|+.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788899999999999999999999866554 2344555 8888999999999999
Q ss_pred -HHHHHHhcCCCccchH----HHH-HHHHHHHHHHHHHHhhhhc
Q 011721 204 -LLQAVRASSRNEKMDE----SYA-KSFEHASLMLTELESQSML 241 (479)
Q Consensus 204 -l~kAL~l~P~n~~a~~----~~~-k~~~rA~eaL~el~~a~~~ 241 (479)
+.++|.+++.+..+.. .+. -.-++..+.++.+.+...+
T Consensus 1302 LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1302 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 8888999977654321 111 1124555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=9.2e-09 Score=103.87 Aligned_cols=184 Identities=11% Similarity=0.020 Sum_probs=127.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 38 AISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 38 Ai~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
|+..|++.+..++....++..+|.++...|++++|+..+.+.+..+|..........++.+|.++|+.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67777777766555566778999999999999999999999988887221222333456899999999999999999988
Q ss_pred hchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 118 KTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNL--AWAYLQQN--DYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 118 l~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nL--G~ay~~lG--dydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
.+|+... . +..++.+| |++.+..| ++.+|...|+++.+..|+...... ++ ++
T Consensus 165 ~~~d~~~---------------------~-~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~ 221 (310)
T 3mv2_B 165 AIEDTVS---------------------G-DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LH 221 (310)
T ss_dssp HSCHHHH---------------------H-HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HH
T ss_pred cCccccc---------------------c-chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HH
Confidence 8662100 0 01133444 66677777 999999999999988887333333 44 99
Q ss_pred HHcCCHHHHHH-HHHHHHh----------cCCCccchH-H--H-HHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 193 IRLNRIAEAKS-LLQAVRA----------SSRNEKMDE-S--Y-AKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 193 ~~lGr~dEAi~-l~kAL~l----------~P~n~~a~~-~--~-~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
+.+|++++|.. +...+.+ +|+|+.... . . ...-+.|.+++.++... .|.++.
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~---~P~hp~ 288 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKL---DHEHAF 288 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHT---TCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHh---CCCChH
Confidence 99999999999 5545555 466655321 0 1 01112566666665555 676664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=89.11 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----cCCHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----SKRIEE 107 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----lGr~de 107 (479)
.+|+++|+.+|+++.+.++.. +. ||.+|...+.+++|++.|+++... .++.+. +.|+.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~--~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGC--RFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHH--HHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHcCCCCCccHHH
Confidence 357888888898888876543 33 888888888888888888887776 333333 235567777 777888
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLE 179 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLd 179 (479)
|+..|++|.+. .++.++++||.+|.. .+++++|+.+|++|.+..
T Consensus 80 A~~~~~~Aa~~----------------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC----------------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888777664 123467778888877 778888888888887763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-09 Score=84.15 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHH
Q 011721 153 GNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDESYAKSFEHAS 229 (479)
Q Consensus 153 ~nLG~ay~~lGdydeA~~~yrKALeLdPdna~-a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~ 229 (479)
+++|.++...|+|++|+.+|+++++++|+++. ++. +|.+|..+|++++|+. +.+++.++|++..+. ......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~~~~ 78 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-----ARKMVM 78 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-----HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-----HHHHHH
Confidence 67899999999999999999999999999998 887 9999999999999999 999999999886521 114445
Q ss_pred HHHHHHHhhhhcCCC
Q 011721 230 LMLTELESQSMLQPT 244 (479)
Q Consensus 230 eaL~el~~a~~~~P~ 244 (479)
+++..+.+....+|+
T Consensus 79 ~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 79 DILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHhccCcc
Confidence 555555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=81.83 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCc
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNE 215 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~ 215 (479)
..+++++|.++..+|+|++|+.+|++|++++|+++.++. +|.+|..+|++++|+. +.+++.++|++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999999999999998877 9999999999999999 999999999873
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=78.79 Aligned_cols=70 Identities=27% Similarity=0.360 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 147 ELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 147 e~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
....+++++|.+|...|++++|+.+|+++++++|+++..+. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 35678999999999999999999999999999999998877 9999999999999999 9999999998754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-08 Score=114.74 Aligned_cols=139 Identities=18% Similarity=0.163 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCch
Q 011721 51 RVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKST 130 (479)
Q Consensus 51 ~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~ 130 (479)
+.+.+|+.+|.++...|++++|+..|.++ +++..+.. ++.++.+.|++++|+++|..|.+..+.... ..
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~e--Va~~~~~lGkyEEAIeyL~mArk~~~e~~I----dt 1171 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYME--VVQAANTSGNWEELVKYLQMARKKARESYV----ET 1171 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhcccccc----cH
Confidence 45678899999999999999999999875 44444433 578999999999999999999987644210 00
Q ss_pred HHHHhh---chh--HHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-
Q 011721 131 KIARSQ---GRK--TQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS- 203 (479)
Q Consensus 131 ~~A~~~---g~k--~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~- 203 (479)
..+... ++. ...-+...+...+.++|..|...|+|++|+.+|.+| ..|. ||.+|.++|++++|++
T Consensus 1172 ~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHH
Confidence 111100 000 111122223356678999999999999999999997 3565 9999999999999999
Q ss_pred HHHHH
Q 011721 204 LLQAV 208 (479)
Q Consensus 204 l~kAL 208 (479)
+.+|.
T Consensus 1244 arKA~ 1248 (1630)
T 1xi4_A 1244 ARKAN 1248 (1630)
T ss_pred HHHhC
Confidence 87773
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-10 Score=118.47 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHH
Q 011721 10 HVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQE 89 (479)
Q Consensus 10 ~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~ 89 (479)
.++.+.+.. ......+.+++..+++++|+..|.++ ++..++..++..+...|++++|+.+++.+++..++ +
T Consensus 24 ~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~-- 94 (449)
T 1b89_A 24 EFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S-- 94 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c--
Confidence 344455442 24445667788888888888888664 33457888888888888888888888877765333 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC--------CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG--------KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~--------k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
.+...|+.+|.++|++++++.+|+. |...++.. .....|...+... ..+..||.+|.+
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~ 160 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 160 (449)
T ss_dssp --------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT---------TCHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH
Confidence 2344566788888888888777753 22111110 1122332222221 367888889999
Q ss_pred cCCHHHHHHHHHHH
Q 011721 162 QNDYESAERYYMKA 175 (479)
Q Consensus 162 lGdydeA~~~yrKA 175 (479)
+|+|++|+++|++|
T Consensus 161 Lg~yq~AVea~~KA 174 (449)
T 1b89_A 161 LGEYQAAVDGARKA 174 (449)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHc
Confidence 99999999999988
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.7e-08 Score=85.51 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhh
Q 011721 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 67 GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~p 146 (479)
+++++|+..|+++.+.....+. |+.+|...+.+++|+..|++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~---------------------------- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL---------------------------- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----------------------------
Confidence 4689999999999988755432 678899999999999999999876
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 147 ELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 147 e~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
.++.++++||.+|.. .+++++|+.+|++|.+. +++.++. ||.+|.. .+++++|+. +.+|.....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 233589999999999 99999999999999987 6787776 9999999 899999999 888887743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-08 Score=101.72 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=92.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 60 AVVMKQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 60 A~vL~~~GrydEAie~lekal~l-----~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
..-+..+|+|++|++.|++++++ .|+++.. ...+.|+.+|..+|+|++|+.+++++|.++....+. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~--~----- 366 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG--S----- 366 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS--S-----
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC--C-----
Confidence 34466889999999999999875 4566542 334457889999999999999999999996654321 1
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHH---HHH-HHHHHHHc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNK---QCN-LAICLIRL 195 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~---a~n-LG~~L~~l 195 (479)
.|+....+++||.+|..+|+|++|+.+|++|+++ .|+++. .++ |+.++.++
T Consensus 367 -----------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 -----------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -----------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 2444468999999999999999999999999996 788874 345 78777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=81.82 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDS-ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR 101 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~-Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k 101 (479)
+..+..++..|++++|+..|.+++..+|++.. +++.+|.+|...|++++|++.|++++.++|++......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------
Confidence 34556788899999999999999999999999 99999999999999999999999999999998754321
Q ss_pred cCCHHHHHHHHHHHHHhchh
Q 011721 102 SKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 102 lGr~deAie~lekALkl~p~ 121 (479)
+.+.+|+..|++++...|.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 5567888888888877664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.6e-08 Score=102.74 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=84.2
Q ss_pred HHCCChHHHHHHHHHHHHh-----cCCChHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 64 KQLDRSEEAIEAIKSFRCL-----CADDSQE-SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 64 ~~~GrydEAie~lekal~l-----~P~da~~-~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
...|+|++|+..|++++++ .|+++.. ...+.|+.+|..+|+|++|+.+|+++|++.....+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~----------- 377 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY----------- 377 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-----------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-----------
Confidence 3568999999999998875 5666653 3344578999999999999999999999966543311
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-----ESDKNKQC 186 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-----dPdna~a~ 186 (479)
.|+....++|||.+|..+|+|++|+.+|++|+++ .|+++...
T Consensus 378 -------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 378 -------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred -------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 2444568999999999999999999999999996 78887543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.77 E-value=9e-08 Score=98.82 Aligned_cols=65 Identities=17% Similarity=0.003 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 149 SRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 149 ~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+.++.-+|.++...|++++|+.++++|++++|+ ..++. +|.++...|++++|+. +.+|+.++|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 345555666666666666666666666666654 33444 6666666666666666 66666666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=81.73 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 49 GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 49 ~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+|++..+++.+|.+|...|++++|+..|++++.++|+++..++ .+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYY--HLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666667777777777777777777777777777777665433 3456677777777777777777776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=103.76 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-- 178 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-- 178 (479)
..|+|++|+.+|+++|++....++. . .|.....+++||.+|..+|+|++|+.+|+++|++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~--~----------------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED--S----------------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT--T----------------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh--h----------------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 4689999999999999985543321 1 2344468999999999999999999999999986
Q ss_pred ---CCCCHH---HHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 179 ---ESDKNK---QCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 179 ---dPdna~---a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.|+++. .++ ||.+|..+|++++|+. +.+|+.+.
T Consensus 372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 677774 466 9999999999999999 88887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.70 E-value=6.1e-07 Score=92.64 Aligned_cols=81 Identities=6% Similarity=-0.138 Sum_probs=47.9
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH--H-HHHHHHHHHHHHHHHHhhhhcCCCChhhH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE--S-YAKSFEHASLMLTELESQSMLQPTDYGED 249 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~--~-~~k~~~rA~eaL~el~~a~~~~P~~~~~~ 249 (479)
++.++|.++.++. +|.++...|++++|+. +.+|+.++|+ ..+.. . .....++..++++.+..++.++|.+.-..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 3455677776666 7777766777777777 7777777653 11111 1 11233556666666667777777665555
Q ss_pred HHHHhhh
Q 011721 250 KRKKILS 256 (479)
Q Consensus 250 ~~~~~~~ 256 (479)
..++++.
T Consensus 348 ~~~~l~F 354 (372)
T 3ly7_A 348 WIENGIF 354 (372)
T ss_dssp HHHHSSS
T ss_pred HHhCcee
Confidence 5555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=87.74 Aligned_cols=172 Identities=12% Similarity=-0.026 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHH-----HHHH-HHHhcCCChHHHHHHHHHH-HHHH--cC-
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIE-----AIKS-FRCLCADDSQESLDNVLLE-LYKR--SK- 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie-----~lek-al~l~P~da~~~l~~aLg~-lY~k--lG- 103 (479)
++.+|..+|.++... .+-.+......+.+++. -+.. +...+|++++..+-.+++. .+.. .|
T Consensus 102 ~~~RA~~Ly~ra~~y---------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg 172 (301)
T 3u64_A 102 AYSRARKLYLRGARY---------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLG 172 (301)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCC
Confidence 355777777776542 12222223334433333 1223 2334566665544433321 1222 12
Q ss_pred -----CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 011721 104 -----RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ-----NDYESAERYYM 173 (479)
Q Consensus 104 -----r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l-----GdydeA~~~yr 173 (479)
...+|...+++|++++|... +..+|..||.+|... |+.++|.++|+
T Consensus 173 ~~Al~~l~~A~a~lerAleLDP~~~------------------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 173 SALPDTVHAAVMMLERACDLWPSYQ------------------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTHH------------------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHhCCCcc------------------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 35778888888888877643 224899999999996 99999999999
Q ss_pred HHHHcCCCC-HHHHH-HHHHHHHc-CCHHHHHH-HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHhh
Q 011721 174 KALSLESDK-NKQCN-LAICLIRL-NRIAEAKS-LLQAVRASSRN-EKMDESYAKSFEHASLMLTELESQ 238 (479)
Q Consensus 174 KALeLdPdn-a~a~n-LG~~L~~l-Gr~dEAi~-l~kAL~l~P~n-~~a~~~~~k~~~rA~eaL~el~~a 238 (479)
+||+|+|+. .+.+. +|..|... |++++|.. +.+++..+|.. +.........-.+|..+|.++..-
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHHhHHh
Confidence 999999975 78777 99999884 99999999 88999988863 332222233446788888776543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=77.65 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 145 VQELSRISGNLAWAYLQQND---YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGd---ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|++++++..+|.+++..++ .++|..+|++||+++|+++.+.. ||.+++..|+|++|+. +.+.+..+|.+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 46778899999999987776 79999999999999999999887 9999999999999999 8888999998544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=98.79 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
.-+..+|++++|+..|+++|++....++. -.|....++.+||.+|..+|+|++|+.+|+++|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~------------------~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPD------------------INIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCT------------------TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCc------------------cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34668999999999999999885443221 123344689999999999999999999999999
Q ss_pred Hc-----CCCCHH---HHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 177 SL-----ESDKNK---QCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 177 eL-----dPdna~---a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
++ .|+++. .++ ||.+|..+|++++|+. +.+|+.+
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 86 677774 355 9999999999999999 8888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=93.72 Aligned_cols=175 Identities=15% Similarity=0.047 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 36 SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAI-EAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 36 eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAi-e~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
+.....|+++|...|.++..++..|..+...|+.++|+ ++|++++..+|.+... ...++.++...|+++.|...|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L--wl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL--AFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 35567888888888888888888888888888888887 8888888888876533 33455778888888888888888
Q ss_pred HHHhc-----------hh----------HHh-cCC---------CchHHHHhhchhHHHhh-hhhHHHHHHHHHHHHHHc
Q 011721 115 KLKKT-----------EE----------VIA-CGG---------KSTKIARSQGRKTQITL-VQELSRISGNLAWAYLQQ 162 (479)
Q Consensus 115 ALkl~-----------p~----------~la-~~~---------k~~~~A~~~g~k~~l~L-~pe~~~al~nLG~ay~~l 162 (479)
++... |. ... ..- .....|+..+..+ +.. .+....+|...|.+....
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHh
Confidence 88752 21 000 000 0111232222222 111 112234666666666665
Q ss_pred C-CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 163 N-DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 163 G-dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+ +++.|...|+++|+..|+++..+. .+..+...|+.+.|.. +.+++...|+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 5 499999999999999999998887 8888899999999999 8999988874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=7.9e-08 Score=101.48 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC---------------
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD--------------- 85 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~--------------- 85 (479)
.+...|......|.+++|..+|.++ +.+..||.+|.++|+|++|+++|+++. +|.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence 5555666677777888888888765 246677888888888888888777761 220
Q ss_pred ------------ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 86 ------------DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 86 ------------da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
+++.. ..++.+|.+.|++++|+.+|+++|.+.+...+ ++.
T Consensus 194 ~lA~~~~l~L~~~ad~l--~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~--------------------------~ft 245 (449)
T 1b89_A 194 RLAQMCGLHIVVHADEL--EELINYYQDRGYFEELITMLEAALGLERAHMG--------------------------MFT 245 (449)
T ss_dssp HHHHHTTTTTTTCHHHH--HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--------------------------HHH
T ss_pred HHHHHHHHHHHhCHhhH--HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH--------------------------HHH
Confidence 11111 12346788888888888888888887654332 344
Q ss_pred HHHHHHH--HcCCHHHHHHHHHHHHHcCC-----CCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 154 NLAWAYL--QQNDYESAERYYMKALSLES-----DKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 154 nLG~ay~--~lGdydeA~~~yrKALeLdP-----dna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
.||.+|. +.++..++++.|...+.+.| .++..+. +..+|.+-++|+.|+.
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 4444443 23444555555555555544 4444444 5555555555555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-06 Score=89.82 Aligned_cols=146 Identities=6% Similarity=-0.080 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhchhHHhcC---------CCchHHHHhhchh
Q 011721 70 EEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEI-ELLKRKLKKTEEVIACG---------GKSTKIARSQGRK 139 (479)
Q Consensus 70 dEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAi-e~lekALkl~p~~la~~---------~k~~~~A~~~g~k 139 (479)
+.....|++++..+|..+..++.. +..+...|+.++|+ ..|++|+...|....+. ......|+..+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~y--a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNM--ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHH--HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHH--HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356678999999999998777654 46678889999997 99999999988643210 1223344443333
Q ss_pred HHHhh-------h---h-----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHH-HHHHHHHcC
Q 011721 140 TQITL-------V---Q-----------ELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 140 ~~l~L-------~---p-----------e~~~al~nLG~ay~~lGdydeA~~~yrKALeL-dPdna~a~n-LG~~L~~lG 196 (479)
....+ . | ....+|...+....+.|+.+.|...|.+|++. .+.....+. .|.+....|
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 21111 1 2 24457888888888999999999999999998 434445555 666665655
Q ss_pred -CHHHHHH-HHHHHHhcCCCccc
Q 011721 197 -RIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 197 -r~dEAi~-l~kAL~l~P~n~~a 217 (479)
+++.|.. +.+++...|+++..
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~ 506 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEY 506 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHH
Confidence 5999999 89999999988653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.9e-06 Score=69.82 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|..+...|+|..|+..|++|++..+.... .......++.+||.+|.++|++++|+.+++
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEI-------------------STIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCC-------------------CcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4667777788888888888888776432110 012344689999999999999999999999
Q ss_pred HHHHcCCCCHHHHH-HH
Q 011721 174 KALSLESDKNKQCN-LA 189 (479)
Q Consensus 174 KALeLdPdna~a~n-LG 189 (479)
+|++++|++..+.+ ++
T Consensus 71 ~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 71 KLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHCTTCHHHHHHHH
T ss_pred HHHhcCCCCHHHHhhHH
Confidence 99999999997755 66
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-06 Score=75.03 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+++++||..|+++|+|++|..+++++|+++|+|..+..
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 58899999999999999999999999999999987765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=66.96 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLE-------SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLd-------Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.-.+.||..++.+|+|..|+..|++|+... +..+..+. ||.+|.++|++++|+. +.+++.++|++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 356899999999999999999999999974 23456676 9999999999999999 8999999999865
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=73.57 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccch
Q 011721 146 QELSRISGNLAWAYLQQN---DYESAERYYMKALSLE-S-DKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMD 218 (479)
Q Consensus 146 pe~~~al~nLG~ay~~lG---dydeA~~~yrKALeLd-P-dna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~ 218 (479)
+.+.++.+++|+++.+.+ ++++++..|+.+++.+ | ++.+++. ||..+.++|+|++|+. +.++|+++|+|.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~--- 105 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN--- 105 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---
Confidence 445579999999999998 7779999999999999 7 4456554 9999999999999999 888999999884
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 011721 219 ESYAKSFEHASLMLTELESQSM 240 (479)
Q Consensus 219 ~~~~k~~~rA~eaL~el~~a~~ 240 (479)
.|..+.+.+++...
T Consensus 106 --------QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 106 --------QAKELERLIDKAMK 119 (152)
T ss_dssp --------HHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH
Confidence 45555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3.8e-05 Score=76.97 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=87.3
Q ss_pred cCCCcHHHHHHHHHHHHH-----CCC------hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 011721 48 AGDRVDSALKDMAVVMKQ-----LDR------SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-----KRIEEEIEL 111 (479)
Q Consensus 48 l~p~~~~Al~~LA~vL~~-----~Gr------ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-----Gr~deAie~ 111 (479)
.++++..+++-.|.+... .|. ..+|...++++++++|+..+...+..||.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456667777777766533 233 5788888999999999955545556788899995 999999999
Q ss_pred HHHHHHhchhH-HhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Q 011721 112 LKRKLKKTEEV-IACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ-QNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 112 lekALkl~p~~-la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~-lGdydeA~~~yrKALeLdPdn 182 (479)
|++||+++|.. + .+++..|..|.. +|++++|.+++++|+.++|..
T Consensus 227 ferAL~LnP~~~i--------------------------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDP--------------------------DHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCS--------------------------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCc--------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999998753 3 377888988887 599999999999999998884
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=66.21 Aligned_cols=51 Identities=18% Similarity=-0.037 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.++|..++++|+..+|++..++..+|.++.+.|+|++|+.++++++..+|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466666666666666666666666666666666666666666666666655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00091 Score=71.02 Aligned_cols=155 Identities=12% Similarity=0.034 Sum_probs=115.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHhc--CCChHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINA--GDRVDSALKDMAVVMKQLDR---------SEEAIEAIKSFRCLC--ADDSQESL 91 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l--~p~~~~Al~~LA~vL~~~Gr---------ydEAie~lekal~l~--P~da~~~l 91 (479)
.....-..|++++|+.+|.+.... .|+ ..+|..|-.++...+. +++|.++|+++.... |+ ...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd---~~t 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN---EAT 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---HHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---HHH
Confidence 345556789999999999998874 454 4456666666665444 788999999887653 44 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
.+.++..|.+.|++++|+.+|++..... +.| +...|+.|=..|.+.|+.++|.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------IQP-RLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------CCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------CCC-ccceehHHHHHHHHCCCHHHHHHH
Confidence 4567789999999999999999876531 111 123677788889999999999999
Q ss_pred HHHHHHc--CCCCHHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 172 YMKALSL--ESDKNKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 172 yrKALeL--dPdna~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
|++..+. .|+ ...|+ |-.+|.+.|++++|..+++.+.
T Consensus 163 ~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 163 DAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 9998875 444 45677 9999999999999999554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0036 Score=66.12 Aligned_cols=55 Identities=11% Similarity=-0.031 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 35 PSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.+.....|+++|...|..+..+...+..+...|+.++|..+|++++.. |.+....
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~ 249 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence 355678999999999999999999999999999999999999999999 9875433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0022 Score=56.58 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+++..|+++|+|..+..
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 58899999999999999999999999999999987765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0078 Score=63.80 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhchhHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLC--ADDSQESLDNVLLELYKRSKR---------IEEEIELLKRKLKKTEEVI 123 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~--P~da~~~l~~aLg~lY~klGr---------~deAie~lekALkl~p~~l 123 (479)
.+..+-..+.+.|++++|+++|+++.... |+ ....+.|..+|...+. .++|.+.|++.....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G---- 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK---- 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC----
Confidence 35555677889999999999999988763 44 2223445556655444 677777777655430
Q ss_pred hcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHcCCHHH
Q 011721 124 ACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL--ESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 124 a~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL--dPdna~a~n-LG~~L~~lGr~dE 200 (479)
+.| +...|+.|-.+|.+.|++++|+..|++..+. .|+ ...|+ |-..|...|++++
T Consensus 101 --------------------~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 101 --------------------VVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp --------------------CCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred --------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHH
Confidence 112 2237888889999999999999999998875 454 56777 8889999999999
Q ss_pred HHH-HHHHHHh--cCCCccch---H--HHHHHHHHHHHHHHHHHhhhhcCCCCh
Q 011721 201 AKS-LLQAVRA--SSRNEKMD---E--SYAKSFEHASLMLTELESQSMLQPTDY 246 (479)
Q Consensus 201 Ai~-l~kAL~l--~P~n~~a~---~--~~~k~~~rA~eaL~el~~a~~~~P~~~ 246 (479)
|.. +.+.... .|+..... . .....+++|.++|.++... ...|...
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~ 211 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKS 211 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHH
Confidence 999 5554432 33321100 0 1124578899999999864 3456533
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0028 Score=55.82 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-CCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYES---AERYYMKALSLE-SDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdyde---A~~~yrKALeLd-Pdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..++.+++||++....+..+ ++..++..+..+ |... +.+. ||..+.++|+|++|+. +...|..+|+|..
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 44688999999999998888 999999999987 5333 4444 9999999999999999 7778999999854
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.05 E-value=0.025 Score=59.57 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=104.4
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---cC
Q 011721 8 LFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL---CA 84 (479)
Q Consensus 8 ~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l---~P 84 (479)
...++...|................|++++|...|.+|+.. |.....+...+.. .+.++. ++.+... ..
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~---~~~l~~~~~~~~ 273 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAV---YGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHH---HHHHHHHTC---
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHH---HHHHHHHHHhhc
Confidence 44455566765555555555667789999999999999999 8865433332222 111122 2222211 10
Q ss_pred --------CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHH
Q 011721 85 --------DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156 (479)
Q Consensus 85 --------~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG 156 (479)
......+....+..+.+.|..+.|...|.+| . .|... ..++...|
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~-------------------------~~v~i~~A 326 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG-------------------------PHVFIYCA 326 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC-------------------------HHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC-------------------------hHHHHHHH
Confidence 0001112222345666788899999999999 3 33210 01333344
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 157 WAYLQQN-DYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 157 ~ay~~lG-dydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+....+ +++.|...|+++++.-|+.+..+. .+..+...|+.+.|.. +.++
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445 699999999999999999987766 7888889999999998 5555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.016 Score=53.36 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=67.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKAL 176 (479)
Q Consensus 97 ~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKAL 176 (479)
..+...|.|+.|+-....++.+......... -.....++..+|.+++..|+|..|+.+|++||
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-----------------p~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-----------------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCccccc-----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4456678888888888877776322111000 00123588999999999999999999999997
Q ss_pred HcC---CCC----------------------HHHHH-HHHHHHHcCCHHHHHHHHHHHH
Q 011721 177 SLE---SDK----------------------NKQCN-LAICLIRLNRIAEAKSLLQAVR 209 (479)
Q Consensus 177 eLd---Pdn----------------------a~a~n-LG~~L~~lGr~dEAi~l~kAL~ 209 (479)
.+. +.+ .+... +|.||+++|++++|+..++.|-
T Consensus 91 q~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 91 QQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 752 111 13444 9999999999999999766653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.036 Score=61.97 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=87.8
Q ss_pred HCCC-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhHHh-cCCCchHHHHhhchhHH
Q 011721 65 QLDR-SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS-KRIEEEIELLKRKLKKTEEVIA-CGGKSTKIARSQGRKTQ 141 (479)
Q Consensus 65 ~~Gr-ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl-Gr~deAie~lekALkl~p~~la-~~~k~~~~A~~~g~k~~ 141 (479)
..++ ++.|+..|+++...+|.... .+..+++.+.... .+--+|+..+.++++-...... ........
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~--------- 329 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS--------- 329 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH---------
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc---------
Confidence 3556 58899999999999997532 1222222222222 2345688888888764322211 11111100
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHHHHHH
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKSLLQA 207 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~l~kA 207 (479)
..+.+-....+..-+..++..|+|+-|+++-++|+.+.|..-..+. |+.||+.+|+|+.|+-.+..
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 0111223345666688888999999999999999999999998887 99999999999999975444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.022 Score=50.70 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDY---ESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdy---deA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+.+.+++||++.+..+- ..++..++..+..+|... +.+. ||..+.++|+|++|+. +...|..+|+|..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 346889999999988765 469999999999999765 4444 9999999999999999 7778999999844
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.046 Score=49.84 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=28.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
..++.++|...|+.++.+....+..+. .|..-..+|+++.|.. +-+|+...|..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 335555555555555555444444443 4555555555555555 55555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.031 Score=50.24 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 148 LSRISGNLAWAYLQQNDYE---SAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 148 ~~~al~nLG~ay~~lGdyd---eA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..++.|++||++....+-+ +++..++..+..+|... +.+. ||..+.++|+|++|.. +...|+.+|+|..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4468899999999988665 79999999999999776 4444 9999999999999999 7778999999843
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.029 Score=51.68 Aligned_cols=93 Identities=14% Similarity=0.005 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCc------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhc---CCC---
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAG---DRV------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLC---ADD--- 86 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~---p~~------~~Al~~LA~vL~~~GrydEAie~lekal~l~---P~d--- 86 (479)
++.-....+..+.|+.|+.+...++... ++. ..++..+|.++..+|+|..|+..|++++... ++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344456778899999999999877642 321 2467889999999999999999999976532 111
Q ss_pred -----------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 87 -----------------SQESLDNVLLELYKRSKRIEEEIELLKR 114 (479)
Q Consensus 87 -----------------a~~~l~~aLg~lY~klGr~deAie~lek 114 (479)
.+..+.+-++.||.++|++++|+..++.
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1223445577999999999999998773
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.096 Score=47.74 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC
Q 011721 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNR 197 (479)
Q Consensus 145 ~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr 197 (479)
....+.+|...|..-.++|+.+.|.+.+.+|+.+.|.....+..|..-++.|+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCC
Confidence 44456778888888889999999999999999999987766666655555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.19 Score=53.97 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCC
Q 011721 26 KRAQLVEKDPSRAIS-LFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKR 104 (479)
Q Consensus 26 ~~~~L~~gd~eeAi~-~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr 104 (479)
....+..+++++|.. ++ ..-++ ...+..+...+...|.+++|++..+ ++... ..+....|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~-----f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK-----FELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH-----HHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh-----eehhhhcCC
Confidence 345577899999876 44 11110 1223566777888899888887653 22111 134566788
Q ss_pred HHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Q 011721 105 IEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS------- 177 (479)
Q Consensus 105 ~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe------- 177 (479)
+++|.+..+. .++...|..||..+.+.|+++.|+.+|.++-.
T Consensus 668 ~~~A~~~~~~-------------------------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 668 LTLARDLLTD-------------------------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHHHHTT-------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHh-------------------------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHH
Confidence 8888776431 12234788888889999999999998887521
Q ss_pred -cCCCCHHHHH-HHHHHHHcCCHHHHHH
Q 011721 178 -LESDKNKQCN-LAICLIRLNRIAEAKS 203 (479)
Q Consensus 178 -LdPdna~a~n-LG~~L~~lGr~dEAi~ 203 (479)
...++..... ++......|+++.|..
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 1233443333 5555555555555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.033 Score=49.54 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+..|+++|+|..+..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 58899999999999999999999999999999987765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.23 Score=44.58 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
+.++.||..++++|+|++|..+.+..|+++|+|..+..
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 58899999999999999999999999999999987655
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.049 Score=58.10 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..+..||.+..-...++.|..+|.+|+.+.|++...+| ||.+....|+.-+|+. |.+++........
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 46788999999999999999999999999999999999 9999999999999999 8999876544443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.65 Score=47.34 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=70.1
Q ss_pred HcCCHHHHHHHHHHHHHhchhHH--hcCC-CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVI--ACGG-KSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALS 177 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~l--a~~~-k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALe 177 (479)
..|+.+.|+..|.+|+.++.... .+.. ....... ..+......++..++.++...|++++|+..+++++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r-------~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFA-------TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF 199 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHH-------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45777778888888887753211 1100 0000000 011122234677888999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHH
Q 011721 178 LESDKNKQCN-LAICLIRLNRIAEAKS-LLQA 207 (479)
Q Consensus 178 LdPdna~a~n-LG~~L~~lGr~dEAi~-l~kA 207 (479)
.+|-+...+. |-.+|...|+..+|+. |.+.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999998887 9999999999999999 6553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=94.14 E-value=1.4 Score=45.54 Aligned_cols=171 Identities=12% Similarity=0.055 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-----HHHHHHHHHH-CCChHHHHHHHHHHHHhcCCChHH----HH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSA-----LKDMAVVMKQ-LDRSEEAIEAIKSFRCLCADDSQE----SL 91 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~A-----l~~LA~vL~~-~GrydEAie~lekal~l~P~da~~----~l 91 (479)
....+.++...|++++-..++......-+..+.| ...|-..+.. .+..+.-++.+..+++-.-++-.. .+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777788887777766544322111111 2222222222 344555556666555432222111 13
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 92 DNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERY 171 (479)
Q Consensus 92 ~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~ 171 (479)
..-|+.+|...|+|.+|+..+.+.++-.... +. ...-.+++..-..+|..+|++.++..+
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd-----------------~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKL---DD-----------------KNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC-----------------THHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc-----------------chhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3457899999999999999999888753220 00 001125777888999999999999999
Q ss_pred HHHHHHcC---CCCHH---HH-H-HHHHHH-HcCCHHHHHH-HHHHHHhcC
Q 011721 172 YMKALSLE---SDKNK---QC-N-LAICLI-RLNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 172 yrKALeLd---Pdna~---a~-n-LG~~L~-~lGr~dEAi~-l~kAL~l~P 212 (479)
|.+|..+. +-++. .+ . -|.+++ ..++|.+|.. |.+++.-..
T Consensus 162 l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 162 LTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 99998764 23332 22 3 688889 8999999999 889875443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.9 Score=46.26 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=69.9
Q ss_pred HHHcCCHHHHHHHHHHHHHc--CC------Cc--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 29 QLVEKDPSRAISLFWAAINA--GD------RV--------------DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 29 ~L~~gd~eeAi~~y~kAL~l--~p------~~--------------~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
....++++.|...+.+|+.+ +| .. ..++..++..+...|++++|+..+..++..+|-+
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~ 204 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR 204 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34568999999999999974 22 10 1234457788899999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTE 120 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p 120 (479)
-..+ ..|..+|...|+..+|+..|++.-+..-
T Consensus 205 E~~~--~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 205 EPLW--TQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHH--HHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5433 3455789999999999999998877643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.62 E-value=3.1 Score=43.22 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAER 170 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~ 170 (479)
+...|+.+|...|++.+|...+.....--- +... ..+..+++.....+|+..++|..|..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~------~~~~--------------~~~kve~~l~q~rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETY------GSME--------------MSEKIQFILEQMELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------SSSC--------------HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH------hccc--------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344567889999999999998887653200 0000 01223577778889999999999999
Q ss_pred HHHHHHH---cCCCCH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHh
Q 011721 171 YYMKALS---LESDKN----KQCN-LAICLIRLNRIAEAKS-LLQAVRA 210 (479)
Q Consensus 171 ~yrKALe---LdPdna----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l 210 (479)
.++++.. -.+.++ ..+. .|.++...++|.+|-. |..++..
T Consensus 199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999743 234443 2344 8999999999999999 7777653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.51 Score=46.58 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=31.3
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+.+.|.+++|++.+...++.+|.|+... ..|+.++.-.|+++.|...++-+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3445555666666655566666554332 23445555566666666666655555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.48 E-value=1.6 Score=46.85 Aligned_cols=106 Identities=14% Similarity=-0.025 Sum_probs=53.0
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhchhHHhcCCCchHHHHhh
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL------KKTEEVIACGGKSTKIARSQ 136 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL------kl~p~~la~~~k~~~~A~~~ 136 (479)
....|++++|.++.+.+ ++... -..++.++.+.|+++.|+.+|.++- .++..
T Consensus 662 ~l~~~~~~~A~~~~~~~-----~~~~~--W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~--------------- 719 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE-----SAEMK--WRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS--------------- 719 (814)
T ss_dssp HHHHTCHHHHHHHHTTC-----CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH---------------
T ss_pred hhhcCCHHHHHHHHHhh-----CcHhH--HHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH---------------
Confidence 45567777776664321 22221 1235566666777777777666641 11100
Q ss_pred chhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 137 GRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCNLAICLIRLNRIAEAKSLLQ 206 (479)
Q Consensus 137 g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~nLG~~L~~lGr~dEAi~l~k 206 (479)
..+.+.+..++.+....|++..|..+|.+. ++. -..-.+|.+.+++++|+.+-+
T Consensus 720 ---------~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~~--~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 720 ---------FNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GDI--QGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TCH--HHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CCH--HHHHHHHHHcCChHHHHHHHH
Confidence 111123344555555566666666555442 111 112345667777777777444
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.42 E-value=1.3 Score=41.32 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=88.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAi 109 (479)
+.-.|++.|+-+-.-.. |+.++.-..++.++.-.|.|..|+-++..+ +-....+.- .-||.+..+|..|+
T Consensus 13 ~kY~dYdt~~fLsa~L~---~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk--~LCy~klKdYkkA~ 82 (242)
T 3kae_A 13 IRYRDYETAIFLAACLL---PCKPEYRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYE--SLCYKKKKDYKKAI 82 (242)
T ss_dssp HHTTCHHHHHHHHHHHC-------CTHHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHH--HHHHHHTTCHHHHH
T ss_pred hhcccccHHHHHHHHHc---cCChHHHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHH--HHHHHHHHHHHHHH
Confidence 45678988864332222 222344567899999999999998776431 222222222 35899999999999
Q ss_pred HHHHHHHH--hc--hhHHhcCCCchHHHHhhchhHHHhhhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 011721 110 ELLKRKLK--KT--EEVIACGGKSTKIARSQGRKTQITLVQELSR-ISGNLAWAYLQQNDYESAERYYMKALSLESDKNK 184 (479)
Q Consensus 110 e~lekALk--l~--p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~-al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~ 184 (479)
..++..|+ ++ |+.- +. ....-++|.+.+ .+..+|.++.+.|+-+||+.+|.......|=.+.
T Consensus 83 ~~le~il~~kvd~d~~~d---------~~----~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 83 KSLESILEGKVERDPDVD---------AR----IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHTTCSBCCCCCC---------HH----HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhcccccCcccc---------cc----cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 99999994 32 2110 00 000123455554 4566799999999999999999999999887665
Q ss_pred HHH
Q 011721 185 QCN 187 (479)
Q Consensus 185 a~n 187 (479)
.-|
T Consensus 150 vEn 152 (242)
T 3kae_A 150 VEN 152 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.78 Score=42.42 Aligned_cols=67 Identities=9% Similarity=-0.055 Sum_probs=48.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIE 106 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~d 106 (479)
.+.+..|+++.|....+.. +...-+..||.....+|+++-|+.+|.++-.. . .+..+|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----~-----~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF-----D-----KLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----H-----HHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----H-----HHHHHHHHhCCHH
Confidence 4677889999999876553 34667899999999999999999999875221 1 1234577777765
Q ss_pred HH
Q 011721 107 EE 108 (479)
Q Consensus 107 eA 108 (479)
.-
T Consensus 78 ~L 79 (177)
T 3mkq_B 78 KL 79 (177)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.39 E-value=1.4 Score=45.56 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCC--ChHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCAD--DSQES--LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~--da~~~--l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.||.+|...|+|.+|.+.+.+++..... +.... +......+|..+|++.++...|.+|....... ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai---~~------ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI---YC------ 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CC------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC---CC------
Confidence 6899999999999999999988875433 22211 22223478999999999999999998773210 00
Q ss_pred HhhchhHHHhhhhh-HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCC--CCH---HHHH-HHHHHHHcCC
Q 011721 134 RSQGRKTQITLVQE-LSRISGNLAWAYL-QQNDYESAERYYMKALSLES--DKN---KQCN-LAICLIRLNR 197 (479)
Q Consensus 134 ~~~g~k~~l~L~pe-~~~al~nLG~ay~-~lGdydeA~~~yrKALeLdP--dna---~a~n-LG~~L~~lGr 197 (479)
.|. .+.+...-|.+++ ..++|.+|-.+|-.+++--. +++ .... ++.|-+-.++
T Consensus 175 -----------~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 175 -----------PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 011 0124455688899 89999999999999985321 222 1222 5555555555
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.33 E-value=1.8 Score=48.36 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCCCcHHHHHHHHHHH--cCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHh-------
Q 011721 16 PAGDSPYVRAKRAQLV--EKD-PSRAISLFWAAINAGDRVDSALKDMAVVMKQ---LDRSEEAIEAIKSFRCL------- 82 (479)
Q Consensus 16 p~~~~pyv~a~~~~L~--~gd-~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~---~GrydEAie~lekal~l------- 82 (479)
|...+-|...+-+.+. .++ ++.|+.+|++....+|... .++..+.+..- ..+--+|+..+.+.++.
T Consensus 243 ~t~v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 243 ATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp CCSSSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4444555544333322 233 6889999999888888654 33333333222 12334566666655431
Q ss_pred -cCCChHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHH
Q 011721 83 -CADDSQE--------SLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISG 153 (479)
Q Consensus 83 -~P~da~~--------~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~ 153 (479)
.+.+... .+....+..+...|+++-|+++-++|+...|. .-..|+
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--------------------------eF~tW~ 375 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--------------------------SFESWY 375 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHH
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--------------------------hhHHHH
Confidence 2333211 12222346677899999999999999988554 334999
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 011721 154 NLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 154 nLG~ay~~lGdydeA~~~y 172 (479)
.|+.+|..+|+|+.|+-.+
T Consensus 376 ~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 376 NLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 9999999999999999643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.37 Score=49.80 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ-ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~-~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
.++..+|..|.+.|++++|+++|.++...+....+ ..+.+.+..++...+++..+..++.++-.+..... ....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~----d~~~- 206 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG----DWER- 206 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----CTHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC----CHHH-
Confidence 46778999999999999999999999887655422 22333345788899999999999999877632211 0000
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES 180 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP 180 (479)
...+....|.+++..++|.+|-.+|..++.-..
T Consensus 207 ---------------~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 ---------------RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp ---------------HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred ---------------HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 012445568888999999999999999887543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.32 E-value=12 Score=37.25 Aligned_cols=160 Identities=17% Similarity=0.080 Sum_probs=83.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHH---hcCCChHHHHHHHHHHHHHHcC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRC---LCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~---l~P~da~~~l~~aLg~lY~klG 103 (479)
..+.+|++-+|-..|+ .++.-|..+++|++|++++.. ++. .........+...+.++|.+.+
T Consensus 22 ~~I~~G~yYEAhQ~~R--------------tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~ 87 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR--------------TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE 87 (312)
T ss_dssp HHHHHTCHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhccChHHHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3455566666655553 355567888999999988654 222 2111122233334557777765
Q ss_pred CH--HHHHHHHHHHHHhchhHHhcCCCchH---HHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 104 RI--EEEIELLKRKLKKTEEVIACGGKSTK---IARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 104 r~--deAie~lekALkl~p~~la~~~k~~~---~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
-. ++.+.-+.+.+...|... +.... .|+.--.+. -...--+++.+..+|..|...|++.+|+.+|-..
T Consensus 88 ~~~~~~~~~rl~~l~~~~p~~~---~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--- 160 (312)
T 2wpv_A 88 VKVDDISVARLVRLIAELDPSE---PNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--- 160 (312)
T ss_dssp CCCSHHHHHHHHHHHTTCCTTC---TTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS---
T ss_pred CCCCHHHHHHHHHHHHHCCCCC---chHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC---
Confidence 44 334444444444433210 00000 111100000 0001135679999999999999999999998622
Q ss_pred CCCCHHHH-H-HHHHHHHc--CCHHHHHH-HHHHH
Q 011721 179 ESDKNKQC-N-LAICLIRL--NRIAEAKS-LLQAV 208 (479)
Q Consensus 179 dPdna~a~-n-LG~~L~~l--Gr~dEAi~-l~kAL 208 (479)
+.+++..+ . |-..+... |...|+-- +.+++
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaV 195 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLV 195 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 11234433 2 55555444 66666555 55654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.30 E-value=9.5 Score=35.66 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--h--cC-------------CChHH
Q 011721 27 RAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC--L--CA-------------DDSQE 89 (479)
Q Consensus 27 ~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~--l--~P-------------~da~~ 89 (479)
.+..-.|.+.+++.++. .-+...+.+--+.+|....+|..|+..++.++. . +| .+- .
T Consensus 41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk-E 114 (242)
T 3kae_A 41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE-E 114 (242)
T ss_dssp HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH-H
T ss_pred hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH-H
Confidence 34556788888877652 234566777788999999999999999999982 2 22 232 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 90 SLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 90 ~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
.+.+.++.++...|..+|||.+|.....+++-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 45566789999999999999999999998763
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.61 E-value=1.2 Score=47.52 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..||++..-.+.++.|..+|.+|+.+.|... ..++.||.+....|+.-+|+-+|
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--------------------------~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNG--------------------------QPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--------------------------chHHHHHHHHhcccccHHHHHHH
Confidence 3478888889999999999999999977643 38899999999999999999999
Q ss_pred HHHHHcCCCCHHHHH-HHHHHHH
Q 011721 173 MKALSLESDKNKQCN-LAICLIR 194 (479)
Q Consensus 173 rKALeLdPdna~a~n-LG~~L~~ 194 (479)
.++|....-.+.+.. |...+..
T Consensus 210 ~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 210 CRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChhHHHHHHHHHHH
Confidence 999998777777665 8777754
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.88 E-value=3.3 Score=40.78 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=54.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
..+..+++++|+......|+.+|.+......|..+|.-.|+++.|.+.++.+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35678999999999999999999999999999999999999999999999999999975
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.39 E-value=0.51 Score=50.58 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=61.8
Q ss_pred HHcCCHHHHHHHHHHHHH---c--------CCCcHHHHHHHHHHHHHCCChHHHHH----------HHHHHHH----hcC
Q 011721 30 LVEKDPSRAISLFWAAIN---A--------GDRVDSALKDMAVVMKQLDRSEEAIE----------AIKSFRC----LCA 84 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~---l--------~p~~~~Al~~LA~vL~~~GrydEAie----------~lekal~----l~P 84 (479)
+..+++++|..+-...+. + +.=.+..|+-.+.++...|+..+... .+..++. ...
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 455788888877665541 1 11123345555666666777665421 2222221 122
Q ss_pred CChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC
Q 011721 85 DDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND 164 (479)
Q Consensus 85 ~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd 164 (479)
.+.++.+.+.+...|...+.|+.|..+..++. .|.... . +.+...+++.+|.++.-+++
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~---s----------------n~q~~rY~YY~GRI~a~q~~ 285 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDV---S----------------SSLEARYFFYLSKINAIQLD 285 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS---C----------------HHHHHHHHHHHHHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccC---C----------------HHHHHHHHHHHHHHHHHhcc
Confidence 34566777778899999999999999999874 332211 0 11223588999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 011721 165 YESAERYYMKALSLESDK 182 (479)
Q Consensus 165 ydeA~~~yrKALeLdPdn 182 (479)
|.+|.+++..|+...|.+
T Consensus 286 Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 286 YSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 999999999999988865
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.31 E-value=3.3 Score=48.04 Aligned_cols=60 Identities=12% Similarity=-0.033 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH-----hcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRC-----LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLK 117 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~-----l~P~da~~~l~~aLg~lY~klGr~deAie~lekALk 117 (479)
.|..|-..|.+.|+.++|.++|..+.. ..|+ ....+.|+..|.+.|+.++|.+.|++...
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455666677777777777777755432 2343 22344556667777777777777776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.55 E-value=1.3 Score=45.76 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
..+|..|.+.|++++|++.|.++...... .....+++..+-.++...+++..|..++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----------------------~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAIS-----------------------TGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----------------------CCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------------------hHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34678999999999999999998764211 0112247777888899999999999999
Q ss_pred HHHHHcCC--CCHH---HH-H-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 173 MKALSLES--DKNK---QC-N-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 173 rKALeLdP--dna~---a~-n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
.||..+-. .+.. .+ . .|.+++..++|.+|.. |..++...
T Consensus 192 ~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 192 EAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99987622 2222 12 2 6888889999999999 77776544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.91 E-value=13 Score=34.14 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=27.6
Q ss_pred HHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011721 63 MKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKL 116 (479)
Q Consensus 63 L~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekAL 116 (479)
..+.|+++.|.++.+.+ ++.. .-.-||+.....|+++-|+.+|.++-
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~--~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSI--TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHH--HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHH--HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34667777777765543 2211 12235666677777777777777543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=5.7 Score=46.12 Aligned_cols=93 Identities=9% Similarity=-0.067 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--cCCChHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAIN-----AGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCL--CADDSQESLDNV 94 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~-----l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l--~P~da~~~l~~a 94 (479)
|-.....+...|+.++|..+|..... ..|+ ..+|+.|-..|.+.|++++|.++|+++... .|+ ...++.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTYnt 205 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHHHH
Confidence 33445567788999999999966432 3555 457899999999999999999999998765 454 233455
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHh
Q 011721 95 LLELYKRSKRI-EEEIELLKRKLKK 118 (479)
Q Consensus 95 Lg~lY~klGr~-deAie~lekALkl 118 (479)
++..+.+.|+. ++|..+|++....
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 67788999984 7889999988764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.17 E-value=24 Score=35.65 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHcCCH---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHH-HHH---hcCCChHHHHHHHHHHHHH
Q 011721 28 AQLVEKDP---SRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKS-FRC---LCADDSQESLDNVLLELYK 100 (479)
Q Consensus 28 ~~L~~gd~---eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lek-al~---l~P~da~~~l~~aLg~lY~ 100 (479)
..+..|+| -+|-..|+ .++.-|..+++|++|++++.. ++. ..-......+...+.++|.
T Consensus 21 ~~I~~G~y~~~YEAHQ~~R--------------Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~ 86 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETR--------------LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFR 86 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHH--------------HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 34556776 55555443 345558889999999997644 222 2111122333344557777
Q ss_pred HcCCH--HHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 101 RSKRI--EEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 101 klGr~--deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
+.+-. ++.+.-+.+.+...|....-...--..|+.--.+. -...--+++.+..+|.+|.+.|+|.+|+.+|-
T Consensus 87 ~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 87 QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 76532 33333344444433321000000000111100000 00012356799999999999999999999993
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.70 E-value=6.2 Score=40.89 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=71.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh-c-CCChH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCL-C-ADDSQ--ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l-~-P~da~--~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
..|+.+|...|++.+|...+..+..- . ..+.. ..+.+....+|...+++..|...++++....-.. ....
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~----~~~~-- 214 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN----PKYE-- 214 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----SCCH--
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc----CCcH--
Confidence 56899999999999999999886532 2 12211 1223334588999999999999999875421100 0000
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL 178 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL 178 (479)
.-...++...|.++...++|.+|-.+|..++..
T Consensus 215 -------------~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 -------------SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 001246778899999999999999999999864
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.40 E-value=8.1 Score=44.74 Aligned_cols=139 Identities=11% Similarity=0.037 Sum_probs=87.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhc
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQG 137 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g 137 (479)
.+...+...+.++-|.+ ++...|.++... +.+|.+|...|++++|..+|++|-.-........ ..........
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAV--YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHH--HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-SSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHH--HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-hhhccccccc
Confidence 45556777788876654 456678776543 5578899999999999999998743210000000 0000000000
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH----HHH-HHHHHHHcCCHHHHHHHH
Q 011721 138 RKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLES-DKNK----QCN-LAICLIRLNRIAEAKSLL 205 (479)
Q Consensus 138 ~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdP-dna~----a~n-LG~~L~~lGr~dEAi~l~ 205 (479)
.. .....-.+.+|..+..++.+.|.++.+++.-+.||+..+ ++.. .+. +=..++.+|+|++|...+
T Consensus 890 ~~--~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 890 EK--YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HT--TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cc--ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00 000011235778888899999999999999999999764 4432 234 777889999999998833
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.67 E-value=5.5 Score=42.69 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHCCChHHHHHHHHHHHH---hc---CCC---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchH
Q 011721 61 VVMKQLDRSEEAIEAIKSFRC---LC---ADD---SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTK 131 (479)
Q Consensus 61 ~vL~~~GrydEAie~lekal~---l~---P~d---a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~ 131 (479)
..+...+++++|.++-..++. +. -.. ..+.+.+.+..+|...|+..+..........+.+..+...
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~----- 218 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL----- 218 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHH-----
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH-----
Confidence 346788999999987765541 11 110 0111112223456667777665555444444443332110
Q ss_pred HHHhhchhHHHhhhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HH---HHH-HHHHHHHcCCHHHHH
Q 011721 132 IARSQGRKTQITLVQE-LSRISGNLAWAYLQQNDYESAERYYMKALSLESDK----NK---QCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 132 ~A~~~g~k~~l~L~pe-~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn----a~---a~n-LG~~L~~lGr~dEAi 202 (479)
+.+.+..+.+ .+.+++.|=..|+..+.|++|..+..|+. .|.+ .. .+. +|.++.-+++|.+|.
T Consensus 219 ------rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~ 290 (523)
T 4b4t_S 219 ------KIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTAN 290 (523)
T ss_dssp ------HHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 0000001111 12466777889999999999999999996 4432 22 223 999999999999999
Q ss_pred H-HHHHHHhcCCCcc
Q 011721 203 S-LLQAVRASSRNEK 216 (479)
Q Consensus 203 ~-l~kAL~l~P~n~~ 216 (479)
. +..|+...|.+..
T Consensus 291 ~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 291 EYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHTSSCSCSSS
T ss_pred HHHHHHHHhCCcchh
Confidence 9 8899998887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 479 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (136), Expect = 2e-09
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 11/184 (5%)
Query: 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRC 81
Y+ + RA++ + A++ ++A V + + AI+ + R
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RA 263
Query: 82 LCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ 141
+ L K + E + L+ I R QG +
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
Query: 142 --------ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICL 192
+ + E + NLA QQ + A +Y +A+ + + N+ L
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Query: 193 IRLN 196
+
Sbjct: 384 KEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 3e-08
Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 17/213 (7%)
Query: 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLD 92
+ AI F A+ A ++ V+K+ + A+ A L + + +
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV--VH 240
Query: 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQ--------ITL 144
L +Y I+ I+ +R ++ + +G + + L
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300
Query: 145 VQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKS 203
+ NLA +Q + E A R Y KAL + + NLA L + ++ EA
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 204 LLQAVRASSRNEKMDESYAKSFEHASLMLTELE 236
+ ++ ++A ++ + L E++
Sbjct: 361 HYKEAI------RISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 154 NLAWAYLQQNDYESAERYYMKALSLESDKNK-QCNLAICLIRLNRIAEAKSLLQAVRASS 212
LA Q D+E+AER+ M+ E D L+ + R+ + A
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIK 61
Query: 213 RNEKMDESY 221
+N + E+Y
Sbjct: 62 QNPLLAEAY 70
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 16/174 (9%), Positives = 45/174 (25%), Gaps = 31/174 (17%)
Query: 37 RAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLL 96
+ + N + ++ + + ++ C+ Q L + L
Sbjct: 104 QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP---QSSSCSYICQHCLVH-LG 159
Query: 97 ELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLA 156
++ + + + + LV + LA
Sbjct: 160 DIARYRNQTSQAESYYRH--------------------------AAQLVPSNGQPYNQLA 193
Query: 157 WAYLQQNDYESAERYYMKALSLESD-KNKQCNLAICLIRLNRIAEAKSLLQAVR 209
+ D+ + YY ++++++ NL L + + V
Sbjct: 194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVS 247
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.75 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.72 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.55 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.46 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.46 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.4 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.37 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.32 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.88 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.79 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.39 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.93 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.67 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.3e-21 Score=185.73 Aligned_cols=221 Identities=16% Similarity=0.120 Sum_probs=176.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..+..++..|++++|+..|.++|+.+|++..++..+|.++...|++++|+..|.+++.++|++...+. .++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM--ALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc--cccccccccc
Confidence 45567889999999999999999999999999999999999999999999999999999999876554 4668899999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCC---------------CchH---------HHHhhchhHHHhhhhh--HHHHHHHHHH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGG---------------KSTK---------IARSQGRKTQITLVQE--LSRISGNLAW 157 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~---------------k~~~---------~A~~~g~k~~l~L~pe--~~~al~nLG~ 157 (479)
++++|+..|++++.+.|....... .... .+.....+ .+.++|+ ++.++.++|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA-AVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH-HHHHSTTSCCHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH-HHHHhhcccccccchhhHH
Confidence 999999999999999886432111 0000 11111111 1345554 4578899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHH
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLML 232 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL 232 (479)
++..+|++++|+.+|++++.++|+++.++. ||.+|..+|++++|+. +.+++.++|+++.+... .....++..+++
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999887 9999999999999999 99999999998775321 123345566777
Q ss_pred HHHHhhhhcCCCChh
Q 011721 233 TELESQSMLQPTDYG 247 (479)
Q Consensus 233 ~el~~a~~~~P~~~~ 247 (479)
..+.+++.++|.+..
T Consensus 261 ~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 261 EHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCcChh
Confidence 777777777776544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.9e-20 Score=178.01 Aligned_cols=211 Identities=16% Similarity=0.088 Sum_probs=171.8
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 6 EELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 6 ~~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
..+.+++...|.....+...+.++...|++++|+..|.+++.++|++..++..+|.+|...|++++|++.|++++...|.
T Consensus 40 ~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 119 (323)
T d1fcha_ 40 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 119 (323)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccc
Confidence 34667888999988899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ChHHHH-------HHH------HHHHHHHcCCHHHHHHHHHHHHHhchhHH--------h---cCCCchHHHHhhchhHH
Q 011721 86 DSQESL-------DNV------LLELYKRSKRIEEEIELLKRKLKKTEEVI--------A---CGGKSTKIARSQGRKTQ 141 (479)
Q Consensus 86 da~~~l-------~~a------Lg~lY~klGr~deAie~lekALkl~p~~l--------a---~~~k~~~~A~~~g~k~~ 141 (479)
...... ... ....+...+.+.+|+..|.+++.++|... + ........|.....+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a- 198 (323)
T d1fcha_ 120 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA- 198 (323)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccc-
Confidence 542110 000 11345566788999999999999876521 0 0112233444333332
Q ss_pred HhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 142 ITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 142 l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
+.+.|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+||.++|++...
T Consensus 199 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 199 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred cccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 5678889999999999999999999999999999999999999887 9999999999999999 99999999988653
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.5e-20 Score=177.45 Aligned_cols=207 Identities=19% Similarity=0.123 Sum_probs=153.0
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADD 86 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~d 86 (479)
.+...+...|.....+...+..+...+++++|+..+.+++..+|++..++..+|.++...|++++|+..|+++...+|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 44556677787777777888888999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcC---------CCchHHHHhhchhHHHhhhhhHHHHHHHHHH
Q 011721 87 SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACG---------GKSTKIARSQGRKTQITLVQELSRISGNLAW 157 (479)
Q Consensus 87 a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~---------~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ 157 (479)
+.... .++.+|...|++++|+..|+++++++|...... ......|....... +...|....++..+|.
T Consensus 237 ~~~~~--~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 237 AVVHG--NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh-hccCCccchhhhHHHH
Confidence 76543 467899999999999999999999977532100 01111222211111 3445555566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 158 AYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 158 ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|..+|++++|+.+|+++++++|+++.++. ||.+|..+|++++|+. +.+++.++|+++.
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~ 374 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 666667777777777777666666666655 6666666677777766 6666666666543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.5e-20 Score=174.54 Aligned_cols=234 Identities=16% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHhhCCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH
Q 011721 11 VIHKVPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES 90 (479)
Q Consensus 11 ~v~k~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~ 90 (479)
.....+................+....+...+.+.+...|+...++..+|.++...|++++|+..+++++.++|++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 206 (388)
T d1w3ba_ 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH
Confidence 34445555555555666677788999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhc---------CCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH
Q 011721 91 LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIAC---------GGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ 161 (479)
Q Consensus 91 l~~aLg~lY~klGr~deAie~lekALkl~p~~la~---------~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~ 161 (479)
. .++.+|...|++++|+..|++++.+.+..... .......|.....+. +.+.|+++.++.++|.+|..
T Consensus 207 ~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 283 (388)
T d1w3ba_ 207 I--NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp H--HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHH
T ss_pred H--HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 4 46789999999999999999999987653211 112233444433332 57889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHH---HHHHHHHHHHHHHHHH
Q 011721 162 QNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDES---YAKSFEHASLMLTELE 236 (479)
Q Consensus 162 lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~~---~~k~~~rA~eaL~el~ 236 (479)
+|++++|+..|++++...|.+...+. +|.++..+|++++|+. +.+++.++|+++.+... .....++..+++..++
T Consensus 284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999998877 9999999999999999 88999999998764321 1223355667777788
Q ss_pred hhhhcCCCChh
Q 011721 237 SQSMLQPTDYG 247 (479)
Q Consensus 237 ~a~~~~P~~~~ 247 (479)
+++.++|++..
T Consensus 364 ~al~l~P~~~~ 374 (388)
T d1w3ba_ 364 EAIRISPTFAD 374 (388)
T ss_dssp HHHTTCTTCHH
T ss_pred HHHHhCCCCHH
Confidence 88889998765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.8e-19 Score=172.05 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=149.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDR-SEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~Gr-ydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
..+.++...+.+++|+.+|.+||.++|.+..+++++|.++...|+ +++|+..+++++.++|++..++.+ ++.++..+
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~--~~~~~~~l 125 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH--RRVLVEWL 125 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH--HhHHHHhh
Confidence 344566677899999999999999999999999999999999875 999999999999999999877655 46789999
Q ss_pred CCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 103 KRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 103 Gr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
|++++|++.|+++++++|. +..+|+++|+++..+|++++|+.+|.++|+++|.+
T Consensus 126 ~~~~eAl~~~~kal~~dp~--------------------------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n 179 (315)
T d2h6fa1 126 RDPSQELEFIADILNQDAK--------------------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 179 (315)
T ss_dssp TCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHhhhhhhhhc--------------------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence 9999999999999998655 34599999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHcCC------HHHHHH-HHHHHHhcCCCccc
Q 011721 183 NKQCN-LAICLIRLNR------IAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 183 a~a~n-LG~~L~~lGr------~dEAi~-l~kAL~l~P~n~~a 217 (479)
..+++ +|.++..+++ +++|+. +.+++.++|++..+
T Consensus 180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~ 222 (315)
T d2h6fa1 180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 222 (315)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHH
Confidence 99988 9999998876 689999 89999999998664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.9e-16 Score=146.43 Aligned_cols=193 Identities=12% Similarity=-0.067 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...|.++...|++++|+..|.+||.++|+++.+++++|.+|..+|++++|++.|++++.++|+++.+.++ +|.+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN--RGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHH--HHHHHH
Confidence 455667889999999999999999999999999999999999999999999999999999999999876544 568899
Q ss_pred HcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhch--------hHHHhhhhhH---HHHHHHHHHHHHHcCCHHHHH
Q 011721 101 RSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGR--------KTQITLVQEL---SRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~--------k~~l~L~pe~---~~al~nLG~ay~~lGdydeA~ 169 (479)
.+|++++|+..|++++++.|.................. .......+.. ..+...+|. ....+.++.+.
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLK 195 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTS-SCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999987532100000000000000 0000111111 011111111 12334577778
Q ss_pred HHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..+..++.+.|+...++. ||.+|..+|++++|+. +.+++..+|++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 888888888888887776 9999999999999999 8999999998743
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.6e-16 Score=154.49 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=158.7
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 7 ELFHVIHKVPAGDSPYVRAKRAQLVE-KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 7 ~~~~~v~k~p~~~~pyv~a~~~~L~~-gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
...+++...|.+...+...+.+.... +++++|+.+|.++|..+|++..++.++|.++..+|++++|++.|.+++.++|+
T Consensus 65 ~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~ 144 (315)
T d2h6fa1 65 LTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK 144 (315)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence 46778899999988888887776665 47999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCC-
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQND- 164 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGd- 164 (479)
+..++.+ +|.+|..+|++++|+..|+++|+++|. +..+|+++|.++...+.
T Consensus 145 n~~a~~~--~~~~~~~~~~~~~Al~~~~~al~~~p~--------------------------n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 145 NYHAWQH--RQWVIQEFKLWDNELQYVDQLLKEDVR--------------------------NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp CHHHHHH--HHHHHHHHTCCTTHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCS
T ss_pred chHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHCCc--------------------------cHHHHHHHHHHHHHcccc
Confidence 9876554 568999999999999999999998655 34599999999998887
Q ss_pred -----HHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 165 -----YESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 165 -----ydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|+.+|.+|++++|++..+++ +|.++...| ++++.. +.+++.+.|+...
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~ 254 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSS 254 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCC
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCC
Confidence 68999999999999999999887 988876554 688888 8888889887643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.2e-14 Score=134.00 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHH
Q 011721 35 PSRAISLFWAAINAG----DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIE 110 (479)
Q Consensus 35 ~eeAi~~y~kAL~l~----p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie 110 (479)
.+.|+..+.+++... +....+++++|.+|...|++++|+..|++++.++|+++.++. .+|.+|..+|++++|+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~--~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN--YLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHh--hhchHHHHHHHHHHhhh
Confidence 456677777777642 335578999999999999999999999999999999987654 46789999999999999
Q ss_pred HHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HH
Q 011721 111 LLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LA 189 (479)
Q Consensus 111 ~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG 189 (479)
.|+++++++|. ++.++.++|.+|..+|++++|+..|+++++++|++..... ++
T Consensus 93 ~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 146 (259)
T d1xnfa_ 93 AFDSVLELDPT--------------------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146 (259)
T ss_dssp HHHHHHHHCTT--------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHhh--------------------------hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999998654 3358999999999999999999999999999999987766 88
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 011721 190 ICLIRLNRIAEAKSLLQAV 208 (479)
Q Consensus 190 ~~L~~lGr~dEAi~l~kAL 208 (479)
.++...+..+.+..+....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 147 LAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHh
Confidence 8888888776666644433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.1e-14 Score=131.51 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=109.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+.+.|..+...|+|++|++.|.++ .|.++...+ .+|.+|..+|++++|+..|++||+++|.
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~--nlG~~~~~~g~~~~A~~~~~kAl~ldp~-------------- 68 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSAV---QDPHSRICF--NIGCMYTILKNMTEAEKAFTRSINRDKH-------------- 68 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHH--HHHHHHHHcCCchhHHHHHHHHHHHhhh--------------
Confidence 456788888888888888888753 455554433 4678888888888888888888887544
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------HHH-HHHHHHHHcCCH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN----------------KQC-NLAICLIRLNRI 198 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna----------------~a~-nLG~~L~~lGr~ 198 (479)
++.+++++|.+|.++|+|++|+..|++|+...|.+. ..+ ++|.++..+|++
T Consensus 69 ------------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 69 ------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred ------------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 445889999999999999999999999998766541 334 489999999999
Q ss_pred HHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHhhhhcCC
Q 011721 199 AEAKS-LLQAVRASSRNEKMDESYAKSFEHASLMLTELESQSMLQP 243 (479)
Q Consensus 199 dEAi~-l~kAL~l~P~n~~a~~~~~k~~~rA~eaL~el~~a~~~~P 243 (479)
++|+. +.+|+.+.|+... ..+..+|..+.+.....|
T Consensus 137 ~~A~~~l~~A~~~~~~~~~---------~~~~~Al~~~~~~~~~~~ 173 (192)
T d1hh8a_ 137 KKAEEQLALATSMKSEPRH---------SKIDKAMECVWKQKLYEP 173 (192)
T ss_dssp HHHHHHHHHHHTTCCSGGG---------GHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhhhhCCc
Confidence 99999 8888888886432 233344555555555555
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.4e-14 Score=139.13 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAG------DRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ES 90 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~------p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~ 90 (479)
-|.+++.++...+++++|+..|.+|+.+. +....++.++|.+|...|++++|+++|++++.+.+.... ..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 46778888889999999999999999842 223467899999999999999999999999988665421 22
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 011721 91 LDNVLLELYKR-SKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAE 169 (479)
Q Consensus 91 l~~aLg~lY~k-lGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~ 169 (479)
....++.+|.. .|++++|+++|++|+.+.+.... .+....++.++|.+|..+|+|++|+
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~--------------------~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------------------VALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc--------------------hhhhhhHHHHHHHHHHHcChHHHHH
Confidence 23335667755 69999999999999998654210 1122358899999999999999999
Q ss_pred HHHHHHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 170 RYYMKALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 170 ~~yrKALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.+|++++.+.|.+. ..+. +|.++...|+++.|.. +.+++.++|....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~ 234 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (290)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence 99999999998874 2334 8999999999999999 8889999886543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3e-14 Score=125.35 Aligned_cols=121 Identities=13% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 55 ALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 55 Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
.+...|..|.+.|+|++|+..|++++.++|+++..+.+ +|.+|..+|++++|+..|+++|+++|.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~~~~~~A~~~~~kal~~~p~------------- 76 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGN--RSLAYLRTECYGYALGDATRAIELDKK------------- 76 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhh--hHHHHHhccccchHHHHHHHHHHHccc-------------
Confidence 45667888899999999999999999999988765543 567888888888888888888887544
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH--HHcCCHHHHHH
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL--IRLNRIAEAKS 203 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L--~~lGr~dEAi~ 203 (479)
+..+++++|.+|..+|+|++|+.+|++++.++|+++.++. ++.+. ...+.+++|+.
T Consensus 77 -------------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 77 -------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3358899999999999999999999999999999988766 66654 34445666665
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.3e-14 Score=119.89 Aligned_cols=109 Identities=15% Similarity=0.072 Sum_probs=80.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARS 135 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~ 135 (479)
+...|..+...|+|++|+..|.+++.++|.++..+. .+|.+|..+|++++|+..|.++++++|.
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------- 69 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS--NRSAAYAKKGDYQKAYEDGCKTVDLKPD-------------- 69 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhh--cccccccccccccccchhhhhHHHhccc--------------
Confidence 556778888888888888888888888888765443 3456777777777777777777776443
Q ss_pred hchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHH
Q 011721 136 QGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICL 192 (479)
Q Consensus 136 ~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L 192 (479)
++.+|+++|.+|..+|+|++|+.+|+++++++|+++.++. ++.+.
T Consensus 70 ------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 70 ------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 3347788888888888888888888888888888877665 66553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=7.7e-14 Score=127.65 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=115.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 24 RAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 24 ~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..+..++..|++++|+..|.+ +.+.++.+++++|.+|..+|++++|++.|++++.++|+++.++.+ +|.+|.++|
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~--~g~~~~~~g 84 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ--RGMLYYQTE 84 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH--HHHHHHhhc
Confidence 345677889999999999976 355567899999999999999999999999999999999876554 578999999
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
++++|+..|++|+...+......... ..+.......++++++|.+|..+|++++|++.|.+|+.+.|+.
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~----------~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKI----------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGG----------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHH----------hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999998755422110000 0001122334689999999999999999999999999999985
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=9.7e-14 Score=123.52 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKK 118 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl 118 (479)
..+...|..|...|+|++|+..|++++.++|+++..+. .+|.+|..+|++++|+..|++||.+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~--~lg~~y~~~~~~~~Ai~~~~~al~l 67 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT--NRALCYLKMQQPEQALADCRRALEL 67 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH--HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--hHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 44566677777777777777777776666666543322 2334444444444444444444444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.4e-15 Score=147.76 Aligned_cols=205 Identities=7% Similarity=-0.170 Sum_probs=130.6
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHCCChHHHHHHHHHHHHhcCC
Q 011721 9 FHVIHKVPAGDSPYVRAKRAQLV--EKDPSRAISLFWAAINAGDRVDSAL-KDMAVVMKQLDRSEEAIEAIKSFRCLCAD 85 (479)
Q Consensus 9 ~~~v~k~p~~~~pyv~a~~~~L~--~gd~eeAi~~y~kAL~l~p~~~~Al-~~LA~vL~~~GrydEAie~lekal~l~P~ 85 (479)
.+++...|.+...+...+.+... .+++++|+..+.+++..+|+...++ ..+|.++...+.+++|+..+++++.++|.
T Consensus 97 ~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~ 176 (334)
T d1dcea1 97 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 34455555544444444433322 2346666666666666666655553 34556666666666666666666666666
Q ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC-----CchHHHHhhchhHHHhhhhhHHHHHHHHHHHHH
Q 011721 86 DSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG-----KSTKIARSQGRKTQITLVQELSRISGNLAWAYL 160 (479)
Q Consensus 86 da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~-----k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~ 160 (479)
+..++. .++.+|..+|++++|+..+.+++.+.|....... .....+.....+ .+...|....++.++|.++.
T Consensus 177 ~~~a~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~-~l~~~~~~~~~~~~l~~~~~ 253 (334)
T d1dcea1 177 NYSSWH--YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR-WLLGRAEPLFRCELSVEKST 253 (334)
T ss_dssp CHHHHH--HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH-HHHSCCCCSSSCCCCHHHHH
T ss_pred CHHHHH--HHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHH-HHHhCcchhhHHHHHHHHHH
Confidence 654433 2445666666666666666666666554321100 000001000000 13445555667788999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 161 QQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 161 ~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..|++++|+..|.+++..+|++..++. ||.+|..+|++++|+. +.+++.++|.+..
T Consensus 254 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~ 311 (334)
T d1dcea1 254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence 999999999999999999999998887 9999999999999999 9999999997644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=9.1e-14 Score=117.15 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=88.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.|..+...|++++|+..|+++|+++|. ++.+++++|.+|..+|++++|+..|.+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH--------------------------NHVLYSNRSAAYAKKGDYQKAYEDGCK 62 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc--------------------------chhhhhcccccccccccccccchhhhh
Confidence 467899999999999999999998554 445999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++++|+++.++. +|.+|..+|++++|+. +.+++.++|++..
T Consensus 63 al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999887 9999999999999999 9999999999854
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.6e-13 Score=121.53 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
..+...|..+...|+|++|+..|++++...|......... ......+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~----------------~~~~~~~----------------- 60 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE----------------AQKAQAL----------------- 60 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH----------------HHHHHHH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH----------------Hhhhchh-----------------
Confidence 3566788889999999999999998888877543110000 0000000
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
...++.++|.+|+++|+|++|+.++++||+++|+++.++. +|.+|..+|++++|+. +.+++.++
T Consensus 61 --------------~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 61 --------------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------------HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 0015566667777777777777777777777776666655 6777777777777777 66666777
Q ss_pred CCCcc
Q 011721 212 SRNEK 216 (479)
Q Consensus 212 P~n~~ 216 (479)
|+|..
T Consensus 127 P~n~~ 131 (170)
T d1p5qa1 127 PNNKA 131 (170)
T ss_dssp SSCHH
T ss_pred CCCHH
Confidence 66654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=3.7e-14 Score=126.28 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYK 100 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~ 100 (479)
.+...|..++..|++++|+.+|.+||..+|+++.++.++|.+|...|++++|+..|++++.++|+++.++++ +|.+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~--lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF--LGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH--HHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999999999998765443 556777
Q ss_pred HcCCHHHHHHHHHHHHHhchh
Q 011721 101 RSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 101 klGr~deAie~lekALkl~p~ 121 (479)
.+|++++|+..|++|+.+.|.
T Consensus 84 ~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 84 EMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcc
Confidence 777777777777777777664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.2e-13 Score=118.57 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=89.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.|+.|.+.|+|++|+..|+++++++|. +..+|+++|.+|+.+|++++|+.+|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~k 69 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS--------------------------NAIYYGNRSLAYLRTECYGYALGDATR 69 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh--------------------------hhhhhhhhHHHHHhccccchHHHHHHH
Confidence 467899999999999999999998654 445999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
||+++|++..++. +|.+|..+|++++|+. +.+++.++|++..+
T Consensus 70 al~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~ 114 (159)
T d1a17a_ 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 114 (159)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999888 9999999999999999 99999999998663
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=1.4e-12 Score=115.70 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+..+...|+|++|+..|.+||.+.+....... ......+.|....++.++|.+|.++|+|++|+.+|.+|
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 103 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE----------DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSC----------HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhh----------hHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence 45566677777777777777766443322100 00113456777889999999999999999999999999
Q ss_pred HHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 176 LSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 176 LeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|+++|+++.++. +|.+|..+|++++|+. +.+++.++|+|..
T Consensus 104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~ 146 (169)
T d1ihga1 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146 (169)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999887 9999999999999999 9999999999865
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.6e-14 Score=150.33 Aligned_cols=175 Identities=12% Similarity=-0.019 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHH--------------------------
Q 011721 37 RAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQES-------------------------- 90 (479)
Q Consensus 37 eAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~-------------------------- 90 (479)
+|+.+|++|+.+.|+..++++++|.++..+|++++| |++++..+|+.+...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 566777777777776666677777777777766665 555555555432110
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCC---------CchHHHHhhchhHHHhhhhhHHHHHHH
Q 011721 91 -------LDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGG---------KSTKIARSQGRKTQITLVQELSRISGN 154 (479)
Q Consensus 91 -------l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~---------k~~~~A~~~g~k~~l~L~pe~~~al~n 154 (479)
....++.++...|.|+.|+..|.+++.+.|....... .....|..... ..+.++...++.+
T Consensus 81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~---~al~~~~~~~~~~ 157 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS---SSCSYICQHCLVH 157 (497)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CC---HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH---HHhCCCHHHHHHH
Confidence 0111223444455566666666666655554321110 01111211111 1234445578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccc
Q 011721 155 LAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKM 217 (479)
Q Consensus 155 LG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a 217 (479)
||.++...|+|++|+.+|++|++++|+++..++ ||.++...|++.+|+. |.+||.++|..+.+
T Consensus 158 LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a 222 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999999999999999999999999998 9999999999999999 99999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=9.2e-13 Score=127.44 Aligned_cols=141 Identities=10% Similarity=-0.038 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----------CCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC
Q 011721 34 DPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----------LDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK 103 (479)
Q Consensus 34 d~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----------~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG 103 (479)
..++|+..+.++|..+|++..+++..+.++.. .|++++|+..|++++..+|++.......+.+..+...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence 35899999999999999999888776666544 44589999999999999999987766554443444445
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
++++|+..+++++.++|.... ..+..+|.++...|.+++|+.+++++++++|++.
T Consensus 124 ~~~~a~~~~~~al~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~ 178 (334)
T d1dcea1 124 NWARELELCARFLEADERNFH-------------------------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (334)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred cHHHHHHHHHHHHhhCchhhh-------------------------hhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence 689999999999999776332 0223444555555555555555555555555555
Q ss_pred HHHH-HHHHHHHcCCHH
Q 011721 184 KQCN-LAICLIRLNRIA 199 (479)
Q Consensus 184 ~a~n-LG~~L~~lGr~d 199 (479)
.+++ +|.+|..+|+++
T Consensus 179 ~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 179 SSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhcCHH
Confidence 5444 555555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.2e-12 Score=117.15 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=77.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.|..|.+.|+|++|+..|++||.+.|....... ........+ .
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~-------------------~~~~~~~~~-----------------~- 61 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN-------------------EEAQKAQAL-----------------R- 61 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS-------------------HHHHHHHHH-----------------H-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccch-------------------HHHhhhchh-----------------H-
Confidence 467899999999999999999998665322110 000011100 0
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChhhH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYGED 249 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~~~ 249 (479)
...++ +|.||+.+|++++|+. +.++|.++|+++.+.. .....+++..+++..+++++.++|.+..+.
T Consensus 62 --------~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~ 133 (170)
T d1p5qa1 62 --------LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 133 (170)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred --------HHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 12344 9999999999999999 9999999999987533 122344667777777888888999887733
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.43 E-value=2.5e-12 Score=114.52 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
..+...|..+...|+|.+|+..|.+++...|....... +.. .... .+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~-~~----------------- 62 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASE-SF----------------- 62 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHH-HH-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcc-hh-----------------
Confidence 34677888999999999999999888877655321100 000 0000 00
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhc
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~ 211 (479)
...++.|+|.+|..+|+|++|+.+|++++.++|++..++. +|.+|..+|++++|+. +.+++.++
T Consensus 63 --------------~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 63 --------------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred --------------HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 0126677888888888888888888888888888887766 8888888888888888 77888888
Q ss_pred CCCccc
Q 011721 212 SRNEKM 217 (479)
Q Consensus 212 P~n~~a 217 (479)
|++..+
T Consensus 129 P~n~~~ 134 (168)
T d1kt1a1 129 PQNKAA 134 (168)
T ss_dssp TTCHHH
T ss_pred CCCHHH
Confidence 887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.42 E-value=1.7e-12 Score=114.23 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
.++.|+|.+|+++|+|++|+.+|++||+++|++..++. +|.+|..+|++++|+. +.+++.++|+|..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 47899999999999999999999999999999999887 9999999999999999 9999999999865
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.7e-13 Score=113.87 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhHHhcCCCchHHHH
Q 011721 58 DMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSK---RIEEEIELLKRKLKKTEEVIACGGKSTKIAR 134 (479)
Q Consensus 58 ~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klG---r~deAie~lekALkl~p~~la~~~k~~~~A~ 134 (479)
+|+..+...+++++|++.|++++.++|+++...+++ |.++.+.+ ++++|+..|++++...|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~--a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~------------- 68 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEY--AWCLVRTRYNDDIRKGIVLLEELLPKGSK------------- 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH--HHHHTTSSSHHHHHHHHHHHHHHTTTSCH-------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHhccCC-------------
Confidence 456666677777777777777777777776665543 34554433 445677777777766432
Q ss_pred hhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHc
Q 011721 135 SQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRL 195 (479)
Q Consensus 135 ~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~l 195 (479)
|...+++++||.+|.++|+|++|+.+|+++|+++|++..+.. ++.+...+
T Consensus 69 -----------~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 69 -----------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 122358999999999999999999999999999999998887 77766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.40 E-value=1.6e-12 Score=115.40 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=95.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--------------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da--------------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+...|..+...|+|++|+..|.+++...+... ...+...++.+|.++|++++|+..|++||+++|.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 45667777777888888877777765433110 1122233678999999999999999999998554
Q ss_pred HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHH
Q 011721 122 VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAE 200 (479)
Q Consensus 122 ~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dE 200 (479)
++.+|+++|.+|..+|+|++|+.+|++|++++|++..+.. |+.++..+....+
T Consensus 110 --------------------------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 110 --------------------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999999998887 9998877766665
Q ss_pred HH
Q 011721 201 AK 202 (479)
Q Consensus 201 Ai 202 (479)
+.
T Consensus 164 ~~ 165 (169)
T d1ihga1 164 KE 165 (169)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=8.5e-11 Score=108.76 Aligned_cols=172 Identities=10% Similarity=-0.004 Sum_probs=132.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChH----HHHHHHH
Q 011721 25 AKRAQLVEKDPSRAISLFWAAINAGDRV-----DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQ----ESLDNVL 95 (479)
Q Consensus 25 a~~~~L~~gd~eeAi~~y~kAL~l~p~~-----~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~----~~l~~aL 95 (479)
.+.+++..|++++|+.+|++++...|.. ..++..+|.+|...|++++|+..|++++.+.+.... ......+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4567889999999999999999988764 357889999999999999999999999887654321 2223446
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011721 96 LELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKA 175 (479)
Q Consensus 96 g~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKA 175 (479)
+.+|...|++..|+..+.+++.+.+..... ..+....++..+|.++...|+++.|..+|+++
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 159 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLE------------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSG 159 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccc------------------hhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence 688999999999999999999986543210 01122346778888899999999999999999
Q ss_pred HHcCCCCH-----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCC
Q 011721 176 LSLESDKN-----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRN 214 (479)
Q Consensus 176 LeLdPdna-----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n 214 (479)
+...+... ..+. ++.++...|++.+|.. +.+++.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 205 (366)
T d1hz4a_ 160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 205 (366)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 88876542 3344 7888888899888888 77777665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.39 E-value=3e-12 Score=112.60 Aligned_cols=115 Identities=20% Similarity=0.176 Sum_probs=91.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhcCCCh--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 56 LKDMAVVMKQLDRSEEAIEAIKSFRCLCADDS--------------QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 56 l~~LA~vL~~~GrydEAie~lekal~l~P~da--------------~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+...|..+...|+|.+|+..|.+++...+... ...+.+.++.+|.++|++++|+.+|++||.++|.
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~ 99 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 99 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence 45677777888888888888888777665421 0112233678999999999999999999998554
Q ss_pred HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcC
Q 011721 122 VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLN 196 (479)
Q Consensus 122 ~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lG 196 (479)
+..+|+++|.+|..+|+|++|+.+|+++++++|++..+.. ++.+...++
T Consensus 100 --------------------------~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 100 --------------------------NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp --------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred --------------------------hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4459999999999999999999999999999999998877 888776553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.38 E-value=7.3e-12 Score=111.39 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
.|..+.+.|+|.+|+..|.+||.+.+..... .++.... ...+.
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~-------------------~~~~~~~-----------------~~~~~- 63 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------------SEKESKA-----------------SESFL- 63 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-------------------CHHHHHH-----------------HHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc-------------------chhhhhh-----------------cchhH-
Confidence 4678999999999999999999885432110 0000000 00000
Q ss_pred HHHcCCCCHHHH-HHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchH---HHHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 175 ALSLESDKNKQC-NLAICLIRLNRIAEAKS-LLQAVRASSRNEKMDE---SYAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 175 ALeLdPdna~a~-nLG~~L~~lGr~dEAi~-l~kAL~l~P~n~~a~~---~~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
...+ |+|.||..+|++++|+. +.+++.++|++..+.. .....+++..+++..+.+++.++|++..
T Consensus 64 --------~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 64 --------LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred --------HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 2234 49999999999999999 9999999999987533 1234445667777777788889999875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.37 E-value=2.6e-13 Score=119.11 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 33 KDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELL 112 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~l 112 (479)
+.+++|+..|++|++++|+++.+++++|.+|...+++..+.+. .+.+++|+..|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~--------------------------~~~~~~Ai~~~ 64 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA--------------------------KQMIQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH--------------------------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH--------------------------HHHHHHHHHHH
Confidence 3478888888888888888888888888888765555444432 23356777777
Q ss_pred HHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCC
Q 011721 113 KRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQN-----------DYESAERYYMKALSLESD 181 (479)
Q Consensus 113 ekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lG-----------dydeA~~~yrKALeLdPd 181 (479)
++||+++|. +..+++++|.+|..+| +|++|+++|++|++++|+
T Consensus 65 ~kAl~l~P~--------------------------~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 65 EEALLIDPK--------------------------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHHHHCTT--------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcch--------------------------hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 777776443 4457888888887765 479999999999999999
Q ss_pred CHHHHH-HHHHHHHcCCHHHHH
Q 011721 182 KNKQCN-LAICLIRLNRIAEAK 202 (479)
Q Consensus 182 na~a~n-LG~~L~~lGr~dEAi 202 (479)
+..++. |+.+....+.+.++.
T Consensus 119 ~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 119 NTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 998877 999876666555543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.8e-11 Score=113.39 Aligned_cols=115 Identities=11% Similarity=0.029 Sum_probs=88.2
Q ss_pred HHHHHHhhCCCCCcH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCChHHHHHH
Q 011721 7 ELFHVIHKVPAGDSP-----YVRAKRAQLVEKDPSRAISLFWAAINAGDR------VDSALKDMAVVMKQLDRSEEAIEA 75 (479)
Q Consensus 7 ~~~~~v~k~p~~~~p-----yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~------~~~Al~~LA~vL~~~GrydEAie~ 75 (479)
.+.+++...|.++.+ +...+.++...|++++|+.+|.+++...+. ...++..++.++...|++.+|+..
T Consensus 34 ~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 113 (366)
T d1hz4a_ 34 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113 (366)
T ss_dssp HHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778887643 334567888999999999999999974322 235678899999999999999999
Q ss_pred HHHHHHhcCCC------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 76 IKSFRCLCADD------SQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 76 lekal~l~P~d------a~~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
+.+++.+.+.. ........++.+|...|+++.|+..|.+++...+.
T Consensus 114 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 114 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp HHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 99988764321 12234455778999999999999999999987553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.35 E-value=2.6e-12 Score=107.33 Aligned_cols=88 Identities=13% Similarity=-0.039 Sum_probs=79.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|.++.+.|++++|+..|++++.++|. ++.++.+||.+|..+|++++|+.+|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~ 75 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE--------------------------REEAWRSLGLTQAENEKDGLAIIALNH 75 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc--------------------------cchhhhhhhhhhhhhhhHHHhhccccc
Confidence 567889999999999999999988554 446999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 175 ALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
|++++|++..++. ||.+|..+|++++|+. +.+.|
T Consensus 76 al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 76 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999887 9999999999999999 76654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=1.3e-11 Score=118.08 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=121.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhcCCC--h--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHH
Q 011721 57 KDMAVVMKQLDRSEEAIEAIKSFRCLCADD--S--QESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKI 132 (479)
Q Consensus 57 ~~LA~vL~~~GrydEAie~lekal~l~P~d--a--~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~ 132 (479)
...|.+|..+|+|++|+++|.+++.+.... . .+.....+|.+|..+|++++|+++|++++.+++....
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-------- 112 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-------- 112 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc--------
Confidence 345889999999999999999999874321 1 1223344689999999999999999999999765321
Q ss_pred HHhhchhHHHhhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC---H---HHHH-HHHHHHHcCCHHHHHH-
Q 011721 133 ARSQGRKTQITLVQELSRISGNLAWAYLQ-QNDYESAERYYMKALSLESDK---N---KQCN-LAICLIRLNRIAEAKS- 203 (479)
Q Consensus 133 A~~~g~k~~l~L~pe~~~al~nLG~ay~~-lGdydeA~~~yrKALeLdPdn---a---~a~n-LG~~L~~lGr~dEAi~- 203 (479)
......++.++|.+|.. .|++++|+.+|++|+++.+.. . ..+. +|.+|..+|+|++|+.
T Consensus 113 ------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 113 ------------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 01123478999999865 699999999999999985432 2 3455 9999999999999999
Q ss_pred HHHHHHhcCCCccchH-------H---HHHHHHHHHHHHHHHHhhhhcCCC
Q 011721 204 LLQAVRASSRNEKMDE-------S---YAKSFEHASLMLTELESQSMLQPT 244 (479)
Q Consensus 204 l~kAL~l~P~n~~a~~-------~---~~k~~~rA~eaL~el~~a~~~~P~ 244 (479)
+.+++...+.+..... . .....++...+...+.+....+|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 8899999887653211 0 011224455566666667766765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.2e-12 Score=107.76 Aligned_cols=109 Identities=12% Similarity=0.151 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
..+.++|..+...|+|++|+.+|.+++.++|+++.... .++.+|..+|++++|+..|++||.++|.....
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~-------- 74 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIT--NQAAVYFEKGDYNKCRELCEKAIEVGRENRED-------- 74 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH--hHHHHHHHcCchHHHHHHHHHHHHhCcccHHH--------
Confidence 35678999999999999999999999999999876443 35788999999999999999999987764321
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
......+|..+|.++..+++|++|+.+|++++.++|+..
T Consensus 75 -----------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 75 -----------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 111235889999999999999999999999999988643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=3.5e-12 Score=108.88 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
.+|+.|...|+|++|+.+|+++|.++|. +..+++++|.+|.++|+|++|+..|+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 62 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPT--------------------------NMTYITNQAAVYFEKGDYNKCRELCE 62 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc--------------------------cHHHHHhHHHHHHHcCchHHHHHHHH
Confidence 3678999999999999999999998654 34599999999999999999999999
Q ss_pred HHHHcCCCCH-------HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCC
Q 011721 174 KALSLESDKN-------KQCN-LAICLIRLNRIAEAKS-LLQAVRASSR 213 (479)
Q Consensus 174 KALeLdPdna-------~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~ 213 (479)
+||+++|++. .++. +|.++..++++++|+. +.+++..++.
T Consensus 63 ~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 9999999875 2455 8999999999999999 8889988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.32 E-value=8.8e-12 Score=109.39 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=89.5
Q ss_pred HHHHHH--HHHHHHCCChHHHHHHHHHHHHhcCCChH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 011721 54 SALKDM--AVVMKQLDRSEEAIEAIKSFRCLCADDSQ----------ESLDNVLLELYKRSKRIEEEIELLKRKLKKTEE 121 (479)
Q Consensus 54 ~Al~~L--A~vL~~~GrydEAie~lekal~l~P~da~----------~~l~~aLg~lY~klGr~deAie~lekALkl~p~ 121 (479)
.++..+ |..+...|+|++|++.|++++.++|+.+. ....+.++.+|..+|++++|+..++++|.+++.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 445544 77888999999999999999999887542 223445788999999999999999999999876
Q ss_pred HHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011721 122 VIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDK 182 (479)
Q Consensus 122 ~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn 182 (479)
....... ..+....+++++|.+|..+|++++|+.+|++|+++.|+.
T Consensus 88 ~~~~~~~---------------~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 88 RGELNQD---------------EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HCCTTST---------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccc---------------ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 5432211 112234589999999999999999999999999997654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.29 E-value=4.6e-12 Score=110.97 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc----------CCHHHH
Q 011721 99 YKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ----------NDYESA 168 (479)
Q Consensus 99 Y~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l----------GdydeA 168 (479)
|.+++.+++|+..|++|++++| +++++++++|.+|..+ +.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P--------------------------~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP--------------------------LDADNLTRWGGVLLELSQFHSISDAKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCC--------------------------cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 6678889999999999999854 4556999999999854 556899
Q ss_pred HHHHHHHHHcCCCCHHHHH-HHHHHHHcCC-----------HHHHHH-HHHHHHhcCCCcc
Q 011721 169 ERYYMKALSLESDKNKQCN-LAICLIRLNR-----------IAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 169 ~~~yrKALeLdPdna~a~n-LG~~L~~lGr-----------~dEAi~-l~kAL~l~P~n~~ 216 (479)
+.+|++|++++|+++.+++ ||.+|..+|+ |++|+. +.+++.++|++..
T Consensus 61 i~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 61 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 9999999999999999887 9999998764 799999 9999999998865
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.4e-12 Score=108.66 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=81.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHc---CCHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQ---NDYESAERY 171 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~l---GdydeA~~~ 171 (479)
+++.+...+++++|++.|+++|.++| +++.+++++|++|... +++++|+..
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p--------------------------~~~~~~~n~a~~L~~s~~~~d~~~Ai~~ 58 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGS--------------------------VSKSTQFEYAWCLVRTRYNDDIRKGIVL 58 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------CCHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCC--------------------------CCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34667789999999999999999854 4556999999999874 456679999
Q ss_pred HHHHHHcCCCCH--HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 172 YMKALSLESDKN--KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 172 yrKALeLdPdna--~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
|++++.++|.+. .++. ||.+|..+|++++|+. +.++|.++|++..
T Consensus 59 l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~ 107 (122)
T d1nzna_ 59 LEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 107 (122)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence 999999998764 4555 9999999999999999 9999999999854
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.26 E-value=2.4e-11 Score=101.33 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHc
Q 011721 23 VRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRS 102 (479)
Q Consensus 23 v~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~kl 102 (479)
...+..++..|++++|+..|+++|..+|++..++..+|.++...|++++|+..|++++.++|+++.+.+ .+|.+|..+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~--~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA--ALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchH--HHHHHHHHC
Confidence 345678889999999999999999999999999999999999999999999999999999999987664 467899999
Q ss_pred CCHHHHHHHHHHHH
Q 011721 103 KRIEEEIELLKRKL 116 (479)
Q Consensus 103 Gr~deAie~lekAL 116 (479)
|++++|+++|++.|
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.25 E-value=2.2e-11 Score=106.78 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 011721 93 NVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYY 172 (479)
Q Consensus 93 ~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~y 172 (479)
+..|..+...|+|++|+..|++||.+.|......... ..+....+|.++|.+|..+|+|++|+..|
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~--------------~~~~~a~~~~nlg~~~~~lg~~~~A~~~~ 78 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD--------------HAGFDAFCHAGLAEALAGLRSFDEALHSA 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCC--------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcc--------------cchhHHHHHHHHHHHHHHcCccchhhHhh
Confidence 3446788999999999999999999987643211110 11223458999999999999999999999
Q ss_pred HHHHHcCCC-------CH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 173 MKALSLESD-------KN----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 173 rKALeLdPd-------na----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+++|.+.|. .. .+++ +|.+|..+|++++|+. +.+++.+.|+...
T Consensus 79 ~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 79 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 999987543 22 2455 9999999999999999 9999999886543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=6.8e-10 Score=106.55 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Q 011721 33 KDPSRAISLFWAAINA-GDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIEL 111 (479)
Q Consensus 33 gd~eeAi~~y~kAL~l-~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~ 111 (479)
+..++|...|.+|+.. .|.....+..++.++..+|++++|..+|++++...|.+.... ...++.+..+.|.++.|+..
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~-w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV-YIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHH-HHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHcCChHHHHHH
Confidence 3468899999999974 778788888999999999999999999999999999875422 23455788899999999999
Q ss_pred HHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHH-HH
Q 011721 112 LKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAY-LQQNDYESAERYYMKALSLESDKNKQCN-LA 189 (479)
Q Consensus 112 lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay-~~lGdydeA~~~yrKALeLdPdna~a~n-LG 189 (479)
|.++++..|.. ...+...|... ...|+++.|...|++++...|+++..+. ++
T Consensus 157 ~~~al~~~~~~--------------------------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~ 210 (308)
T d2onda1 157 FKKAREDARTR--------------------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI 210 (308)
T ss_dssp HHHHHTSTTCC--------------------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCc--------------------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999875432 23566666654 4468999999999999999999998888 99
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 190 ICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 190 ~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
..+...|+++.|.. +.+++...|.++.
T Consensus 211 ~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 211 DYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 99999999999999 9999998876643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.8e-11 Score=126.78 Aligned_cols=139 Identities=7% Similarity=0.033 Sum_probs=90.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHH
Q 011721 28 AQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEE 107 (479)
Q Consensus 28 ~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~de 107 (479)
+....+.|+.|+..|.+++.++|++..++.++|.++...|++++|+..+++++..+|.. ....+|+++...|++++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH----CLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHH----HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH----HHHHHHHHHHHcccHHH
Confidence 33445677788888888888889989999999999999999999999999998887642 23447899999999999
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN 187 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n 187 (479)
|+.+|++|+.++|.. ..+|++||.+|...|++.+|+.+|.+||.++|.++.++.
T Consensus 171 A~~~y~~A~~l~P~~--------------------------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~ 224 (497)
T d1ya0a1 171 AESYYRHAAQLVPSN--------------------------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHCTTB--------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred HHHHHHHHHHHCCCc--------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 999999999986653 358999999999999999999999999999999998876
Q ss_pred -HHHHHHHcC
Q 011721 188 -LAICLIRLN 196 (479)
Q Consensus 188 -LG~~L~~lG 196 (479)
|+.++....
T Consensus 225 nL~~~~~~~~ 234 (497)
T d1ya0a1 225 NLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 999887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=2.3e-10 Score=92.87 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=62.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011721 95 LLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMK 174 (479)
Q Consensus 95 Lg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrK 174 (479)
+|.++.+.|+|++|+..|++|+++.|..... .++...++.+||.+|.++|+|++|+.+|++
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-------------------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEIS-------------------TIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-------------------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-------------------CccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 4556666777777777777777665543210 123346999999999999999999999999
Q ss_pred HHHcCCCCHHHHH-HHHHHHHc
Q 011721 175 ALSLESDKNKQCN-LAICLIRL 195 (479)
Q Consensus 175 ALeLdPdna~a~n-LG~~L~~l 195 (479)
||+++|+++.+++ |+.+...+
T Consensus 72 aL~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 72 LLELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHh
Confidence 9999999998876 98876544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=6.2e-09 Score=99.70 Aligned_cols=175 Identities=10% Similarity=-0.004 Sum_probs=140.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHH
Q 011721 15 VPAGDSPYVRAKRAQLVEKDPSRAISLFWAAINAGDRV-DSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDN 93 (479)
Q Consensus 15 ~p~~~~pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~-~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~ 93 (479)
.|....-+...+.+....|++++|...|.++|...|.. ..++..++..+.+.|.+++|+++|++++...|.........
T Consensus 95 ~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~ 174 (308)
T d2onda1 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44433333445566778899999999999999988865 44678899999999999999999999999999987665544
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011721 94 VLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYM 173 (479)
Q Consensus 94 aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yr 173 (479)
++ ..+...|+.+.|...|++++..+|. ++.++...+..+...|+++.|...|+
T Consensus 175 a~-~e~~~~~~~~~a~~i~e~~l~~~p~--------------------------~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 175 AL-MEYYCSKDKSVAFKIFELGLKKYGD--------------------------IPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HH-HHHHTSCCHHHHHHHHHHHHHHHTT--------------------------CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HH-HHHHhccCHHHHHHHHHHHHHhhhh--------------------------hHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 32 2345578999999999999987554 33488888999999999999999999
Q ss_pred HHHHcCCCCH----HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 174 KALSLESDKN----KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 174 KALeLdPdna----~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+|+...|.++ ..+. ........|+.+.+.. +.++.++.|....
T Consensus 228 ~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 9999887654 3555 6666677899999999 7788999987654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.04 E-value=4.6e-09 Score=97.40 Aligned_cols=184 Identities=18% Similarity=0.099 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 011721 21 PYVRAKRAQLVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQ----LDRSEEAIEAIKSFRCLCADDSQESLDNVLL 96 (479)
Q Consensus 21 pyv~a~~~~L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~----~GrydEAie~lekal~l~P~da~~~l~~aLg 96 (479)
.++..+.....++|+++|+.+|++|.+.+ +..+++.||.+|.. ..++..|+..++.+.... ++.... .++
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~--~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH--LLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH--HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhh--ccc
Confidence 45677788889999999999999998875 57899999999998 779999999999877654 333322 234
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhchhHH-------hcCC----CchHHHHhh----------------chh------
Q 011721 97 ELYKR----SKRIEEEIELLKRKLKKTEEVI-------ACGG----KSTKIARSQ----------------GRK------ 139 (479)
Q Consensus 97 ~lY~k----lGr~deAie~lekALkl~p~~l-------a~~~----k~~~~A~~~----------------g~k------ 139 (479)
.++.. .++.+.|+..|+++....+... ...+ .....+... +..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence 44443 5688999999999987643211 0000 011111100 000
Q ss_pred -----------HHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHH
Q 011721 140 -----------TQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIA 199 (479)
Q Consensus 140 -----------~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~d 199 (479)
.....+..++.++++||.+|.. ..++++|+.+|++|.+.+ ++.++. ||.+|.. ..+++
T Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~ 235 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEK 235 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCST
T ss_pred cccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHH
Confidence 0012244456777888888777 668888888888887773 566655 8888775 33777
Q ss_pred HHHH-HHHHHHhcC
Q 011721 200 EAKS-LLQAVRASS 212 (479)
Q Consensus 200 EAi~-l~kAL~l~P 212 (479)
+|+. +.+|.....
T Consensus 236 ~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 236 QAIENFKKGCKLGA 249 (265)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCcC
Confidence 8888 777776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5.3e-09 Score=84.55 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQNDYESAERYYMKALSLESDK-------NKQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lGdydeA~~~yrKALeLdPdn-------a~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
+-.+.+|.+++++|+|++|+.+|++|+++.|.+ +.+++ ||.+|..+|++++|+. +.++|.++|++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 356899999999999999999999999997654 45666 9999999999999999 9999999999865
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.87 E-value=1.3e-09 Score=104.91 Aligned_cols=125 Identities=14% Similarity=0.001 Sum_probs=71.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHH
Q 011721 30 LVEKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEI 109 (479)
Q Consensus 30 L~~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAi 109 (479)
+.+|++++|+..|+++|+.+|++..++..||.+|...|++++|++.|+++++++|++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~---------------------- 64 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL---------------------- 64 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH----------------------
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH----------------------
Confidence 3455555555555555555555555555555555555555555555555555555432
Q ss_pred HHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHH-
Q 011721 110 ELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSL-ESDKNKQCN- 187 (479)
Q Consensus 110 e~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeL-dPdna~a~n- 187 (479)
.++.+++.++...+..+++...+.++..+ +|+....+.
T Consensus 65 ----------------------------------------~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~ 104 (264)
T d1zbpa1 65 ----------------------------------------PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 104 (264)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHH
Confidence 24455555555555666665555554443 333333333
Q ss_pred HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 188 LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 188 LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
++.++...|++++|+. +.+++.+.|..+.
T Consensus 105 ~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 105 SFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 6677777777777777 6667777777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=1.1e-08 Score=92.52 Aligned_cols=115 Identities=12% Similarity=-0.038 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHH
Q 011721 54 SALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIA 133 (479)
Q Consensus 54 ~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A 133 (479)
.++...|..+...|++++|++.|.+++.+.+.+....+. .+.+ .+...
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~---------~~~w-----~~~~r------------------ 59 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQF-----VEPFA------------------ 59 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTT-----HHHHH------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc---------chHH-----HHHHH------------------
Confidence 356667777777888888888887777777765311000 0000 00001
Q ss_pred HhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHcCCHHHHHH-HHHHH
Q 011721 134 RSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKNKQCN-LAICLIRLNRIAEAKS-LLQAV 208 (479)
Q Consensus 134 ~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~lGr~dEAi~-l~kAL 208 (479)
..+.+....++.++|.++..+|++++|+.+++++++++|.+...+. |+.+|..+|++.+|+. |.++.
T Consensus 60 --------~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 60 --------TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1233445568999999999999999999999999999999999887 9999999999999999 77763
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.79 E-value=4.4e-09 Score=101.04 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011721 100 KRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLE 179 (479)
Q Consensus 100 ~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLd 179 (479)
...|++++|+..|+++++.+|. +..++.+||.+|...|++++|+..|+++++++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~--------------------------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK--------------------------DASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT--------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4568888888888888888554 33588999999999999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHcCCHHHHHH-HHHHHHh-cCCCccchH---H---HHHHHHHHHHHHHHHHhhhhcCCCChh
Q 011721 180 SDKNKQCN-LAICLIRLNRIAEAKS-LLQAVRA-SSRNEKMDE---S---YAKSFEHASLMLTELESQSMLQPTDYG 247 (479)
Q Consensus 180 Pdna~a~n-LG~~L~~lGr~dEAi~-l~kAL~l-~P~n~~a~~---~---~~k~~~rA~eaL~el~~a~~~~P~~~~ 247 (479)
|++...+. ++.++...+..+++.. ..+...+ .|.+..... . ....+++|.+++..+... .|....
T Consensus 61 P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~---~p~~~~ 134 (264)
T d1zbpa1 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL---RQEKGF 134 (264)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCCE
T ss_pred CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCCCc
Confidence 99998877 9999988888888877 5554333 332211111 1 113345566665555554 555444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.39 E-value=2.3e-06 Score=76.77 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------cHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 011721 22 YVRAKRAQLVEKDPSRAISLFWAAINAGDR----------------------VDSALKDMAVVMKQLDRSEEAIEAIKSF 79 (479)
Q Consensus 22 yv~a~~~~L~~gd~eeAi~~y~kAL~l~p~----------------------~~~Al~~LA~vL~~~GrydEAie~leka 79 (479)
.+..+......|++++|+..|.+|+.+.+. ...++.+++.++...|++++|+..++++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~a 93 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 93 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 345666778899999999999999996442 1256788999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHh
Q 011721 80 RCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIA 124 (479)
Q Consensus 80 l~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la 124 (479)
+.++|.+...+ ..++.+|..+|++.+|+..|+++.+...+.++
T Consensus 94 l~~~P~~e~~~--~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG 136 (179)
T d2ff4a2 94 TFEHPYREPLW--TQLITAYYLSDRQSDALGAYRRVKTTLADDLG 136 (179)
T ss_dssp HHHSTTCHHHH--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhCCccHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 99999987554 44668999999999999999999887555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=8.1e-05 Score=67.88 Aligned_cols=154 Identities=14% Similarity=0.047 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhch-hHH---
Q 011721 52 VDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----SKRIEEEIELLKRKLKKTE-EVI--- 123 (479)
Q Consensus 52 ~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----lGr~deAie~lekALkl~p-~~l--- 123 (479)
++.++++||..+...+++++|++.|+++.+. +++.+.+. ||.+|.. ..++..|+..++.+..... ...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~--Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFN--LGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHH--HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHH--HHHHHHcCCCcchhHHHHHHhhcccccccccchhhcc
Confidence 3678999999999999999999999999765 45554433 6678887 6799999999999987632 111
Q ss_pred h---cC----CCchHHHHhhchhH---------------------------------HHhhhhhHHHHHHHHHHHHHH--
Q 011721 124 A---CG----GKSTKIARSQGRKT---------------------------------QITLVQELSRISGNLAWAYLQ-- 161 (479)
Q Consensus 124 a---~~----~k~~~~A~~~g~k~---------------------------------~l~L~pe~~~al~nLG~ay~~-- 161 (479)
+ .. ......+....+.. .....+.+..++++||.+|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~ 156 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 156 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCC
Confidence 0 00 11111111100000 012334455788999999986
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhc
Q 011721 162 --QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRAS 211 (479)
Q Consensus 162 --lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~ 211 (479)
..+...+..+++++.+ ++++.++. ||.+|.. ..++++|+. +.++....
T Consensus 157 ~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 157 GTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred Ccccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 5678888888888875 45777765 9999988 678999999 88887764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.14 E-value=7.1e-06 Score=69.17 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=70.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----cCCHHH
Q 011721 32 EKDPSRAISLFWAAINAGDRVDSALKDMAVVMKQLDRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKR----SKRIEE 107 (479)
Q Consensus 32 ~gd~eeAi~~y~kAL~l~p~~~~Al~~LA~vL~~~GrydEAie~lekal~l~P~da~~~l~~aLg~lY~k----lGr~de 107 (479)
.+|+++|+.+|++|.+.+.. .+.+.|+. ....++++|+..|+++.+. +++...+ .|+.+|.. ..++++
T Consensus 6 ~kd~~~A~~~~~kaa~~g~~--~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~--~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELNEM--FGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCR--FLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHH--HHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHHCCCh--hhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhh--hHHHhhhhccccchhhHH
Confidence 45888999999999887643 45566653 3456777777777776554 3333322 24455554 345666
Q ss_pred HHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q 011721 108 EIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQ----QNDYESAERYYMKALSLES 180 (479)
Q Consensus 108 Aie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdP 180 (479)
|+.+|+++.+. .++.+.++||.+|.. ..++++|+.+|++|.++..
T Consensus 78 A~~~~~~aa~~----------------------------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGL----------------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhcc----------------------------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 77777666554 122356667776665 4567777777777766543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.93 E-value=7.5e-05 Score=62.60 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhh
Q 011721 67 DRSEEAIEAIKSFRCLCADDSQESLDNVLLELYKRSKRIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQ 146 (479)
Q Consensus 67 GrydEAie~lekal~l~P~da~~~l~~aLg~lY~klGr~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~p 146 (479)
.++++|+..|+++.+.....+ .+. |+ .....++++|+..|+++.+.
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a--~~~--l~--~~~~~~~~~a~~~~~~aa~~---------------------------- 52 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFG--CLS--LV--SNSQINKQKLFQYLSKACEL---------------------------- 52 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--HHH--HH--TCTTSCHHHHHHHHHHHHHT----------------------------
T ss_pred cCHHHHHHHHHHHHHCCChhh--hhh--hc--cccccCHHHHHHHHhhhhcc----------------------------
Confidence 368899999999887754332 222 22 23456888999999887765
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHH----cCCHHHHHH-HHHHHHhcC
Q 011721 147 ELSRISGNLAWAYLQ----QNDYESAERYYMKALSLESDKNKQCN-LAICLIR----LNRIAEAKS-LLQAVRASS 212 (479)
Q Consensus 147 e~~~al~nLG~ay~~----lGdydeA~~~yrKALeLdPdna~a~n-LG~~L~~----lGr~dEAi~-l~kAL~l~P 212 (479)
.++.+.++||.+|.. ..++++|+.+|++|.+. +++.++. ||.+|.. ..++++|+. +.+|..+..
T Consensus 53 g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 53 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 234588999999987 67899999999999886 4677766 9999987 468999999 888887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=7.1e-05 Score=63.82 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCH-HHHH-HHHHHHHcCCHHHHHH-HHHHHHhcCCCcc
Q 011721 150 RISGNLAWAYLQQN---DYESAERYYMKALSLESDKN-KQCN-LAICLIRLNRIAEAKS-LLQAVRASSRNEK 216 (479)
Q Consensus 150 ~al~nLG~ay~~lG---dydeA~~~yrKALeLdPdna-~a~n-LG~~L~~lGr~dEAi~-l~kAL~l~P~n~~ 216 (479)
...|+.||++.... +.++|+..|+.++..+|.+. +.+. ||.+|.++|+|++|+. +.++|.++|+|..
T Consensus 36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 57899999999765 45699999999999999876 5654 9999999999999999 8899999999854
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.67 E-value=7.3e-05 Score=63.76 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhchhHHhcCCCchHHHHhhchhHHHhhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 011721 104 RIEEEIELLKRKLKKTEEVIACGGKSTKIARSQGRKTQITLVQELSRISGNLAWAYLQQNDYESAERYYMKALSLESDKN 183 (479)
Q Consensus 104 r~deAie~lekALkl~p~~la~~~k~~~~A~~~g~k~~l~L~pe~~~al~nLG~ay~~lGdydeA~~~yrKALeLdPdna 183 (479)
+..+||.+|+++++..|.. ..+++++||.+|+++|+|++|..+++++|+++|+|.
T Consensus 53 d~~~gI~lLe~~~~~~p~~-------------------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESR-------------------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGG-------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCchh-------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 3456777777777654331 125899999999999999999999999999999999
Q ss_pred HHHH
Q 011721 184 KQCN 187 (479)
Q Consensus 184 ~a~n 187 (479)
.+..
T Consensus 108 qA~~ 111 (124)
T d2pqrb1 108 QVGA 111 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|