Citrus Sinensis ID: 011737

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MNHEIESEICEISVDPVKVANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFTQ
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mnheieseiceisvdpvkvangevdddgrsrrtgtVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYtsgllaecyrapnsvkrnytyRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAIsksncyhkeghkapckysynpymMALGIVEILLsqipnfhklsWLSTIAASMSFSYAGIGMGLSFAKIVsghgekttLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDtlkssppeqevMKKANTIATFTATTLYLMCGCLgyaalgnhaqgniltgfgfyepfwlidlANFFIVVHLLGAYQVLAQPVFGVveswagnrwpkskfindehhlgigknnskfSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAiaywpmtvyfPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFTQ
mnheieseiceisvdpvkvangevdddgrsrrTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRapnsvkrnytyrDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHhlgigknnskfSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFTQ
MNHEIESEICEISVDPVKVANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGlhlvnlvcllaalaaGCGSIQGVNQALHTYKLFKFTQ
*********CEISV******************TGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDT************KANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKF**
**********************************TVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKS*PP**EVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFT*
MNHEIESEICEISVDPVKVANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFTQ
***********************VDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLF****
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MNHEIESEICEISVDPVKVANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKFTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
O80592475 Amino acid permease 8 OS= yes no 0.962 0.968 0.559 1e-155
Q42400485 Amino acid permease 1 OS= no no 0.981 0.967 0.542 1e-152
P92934481 Amino acid permease 6 OS= no no 0.947 0.941 0.55 1e-148
Q38967493 Amino acid permease 2 OS= no no 0.964 0.935 0.523 1e-146
Q9FN04466 Amino acid permease 4 OS= no no 0.945 0.969 0.529 1e-143
Q8GUM3480 Amino acid permease 5 OS= no no 0.981 0.977 0.495 1e-137
Q39134476 Amino acid permease 3 OS= no no 0.981 0.985 0.512 1e-137
Q9FF99467 Probable amino acid perme no no 0.910 0.931 0.457 1e-103
Q9FKS8446 Lysine histidine transpor no no 0.805 0.863 0.298 4e-40
Q9C733453 Lysine histidine transpor no no 0.859 0.907 0.301 1e-39
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function desciption
 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 262/468 (55%), Positives = 341/468 (72%), Gaps = 8/468 (1%)

Query: 15  DPVKVANGE-----VDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIA 69
           +P  V +G+     VDDDGR +RTGT WTASAHIITA++GSGVLSLAW +AQLGW+ G  
Sbjct: 6   NPSAVESGDAAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTT 65

Query: 70  TLVIFSGISLYTSGLLAECYRAPNSVK--RNYTYRDAVKNYLGGRKYKALGLVQYTLLCG 127
            LV F+ I+ YTS LLA+CYR+P+S+   RNY Y   V++YLGG+K +  G+ QY  L G
Sbjct: 66  VLVAFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVG 125

Query: 128 AMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSW 187
             +GYTITASIS+VAI KSNCYH +GHKA C  S  PYM A GIV+I+LSQ+PNFHKLS+
Sbjct: 126 VTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSF 185

Query: 188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMA 247
           LS IAA MSFSYA IG+GL+ A + SG   KT LTG  IG+D+TA++K W++FQAIG++A
Sbjct: 186 LSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIA 245

Query: 248 FACSYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNI 307
           F+ ++  ILIEIQDTL+SSPPE +VMK+A+ +   T T  Y++CGC+GYAA GN A G+ 
Sbjct: 246 FSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDF 305

Query: 308 LTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLG 367
           LT FGFYEP+WLID AN  I +HL+GAYQV AQP F  VE     +WP+S FIN E+   
Sbjct: 306 LTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSK 365

Query: 368 IGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYI 427
           +     K  VN FRL+WRT +V + T ++M FPFFN +L  LGA A+WP+TVYFP+ M+I
Sbjct: 366 V-PLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHI 424

Query: 428 VRKEIKRGTICWFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFK 475
            + ++K+ +  W  L+L+ LVCL+ +  A  GSI G+  ++ +YK FK
Sbjct: 425 AQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
255550966486 amino acid transporter, putative [Ricinu 0.953 0.938 0.663 0.0
224092254504 amino acid permease [Populus trichocarpa 0.956 0.906 0.660 1e-180
225429371478 PREDICTED: amino acid permease 1-like [V 0.976 0.976 0.601 1e-172
296081570 590 unnamed protein product [Vitis vinifera] 0.970 0.786 0.605 1e-171
225429375479 PREDICTED: amino acid permease 1 [Vitis 0.983 0.981 0.602 1e-169
225429367483 PREDICTED: amino acid permease 8 [Vitis 0.987 0.977 0.604 1e-169
296081568475 unnamed protein product [Vitis vinifera] 0.979 0.985 0.609 1e-169
255550968420 amino acid transporter, putative [Ricinu 0.874 0.995 0.654 1e-167
225429369476 PREDICTED: amino acid permease 8-like [V 0.983 0.987 0.591 1e-166
147797725487 hypothetical protein VITISV_035457 [Viti 0.976 0.958 0.590 1e-166
>gi|255550966|ref|XP_002516531.1| amino acid transporter, putative [Ricinus communis] gi|223544351|gb|EEF45872.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/458 (66%), Positives = 378/458 (82%), Gaps = 2/458 (0%)

Query: 21  NGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLY 80
           NGE+DDDG+ RRTGTVWTASAHIITAI+GSGVLSLAW +AQ+GWI GIATL+IFS I+LY
Sbjct: 29  NGELDDDGKPRRTGTVWTASAHIITAIIGSGVLSLAWAMAQMGWIAGIATLLIFSFITLY 88

Query: 81  TSGLLAECYRAPNSV--KRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASI 138
           TSG LA+ YR+P+ V  KRNYTY +AVK  LGG  YK  GLVQYT + G  VGYTIT++I
Sbjct: 89  TSGFLADSYRSPDPVTGKRNYTYMEAVKANLGGNMYKLCGLVQYTYMGGLAVGYTITSAI 148

Query: 139 SMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFS 198
            +VA+ KSNC++K GH APCKYS NPYM+ +G+VEI+LSQIPN H++SWLS +A+ MSF 
Sbjct: 149 CIVALLKSNCFYKRGHGAPCKYSSNPYMIGMGVVEIVLSQIPNLHEMSWLSFLASLMSFG 208

Query: 199 YAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIE 258
           YA IG+GL+ AKI+SG  E++TLTGVEIG+DL+ ADK W + +AIG+MAFACSYA +LIE
Sbjct: 209 YASIGIGLALAKIISGKRERSTLTGVEIGVDLSQADKIWTMLRAIGDMAFACSYAGVLIE 268

Query: 259 IQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFW 318
           IQDTLKSSPPE +VMKKANTIA  T+T  Y+MCGCLGYAALGN A GN+LT FGF EPFW
Sbjct: 269 IQDTLKSSPPENKVMKKANTIAILTSTAFYVMCGCLGYAALGNRAPGNLLTDFGFSEPFW 328

Query: 319 LIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVN 378
           LID+AN F+V+HL+GAYQVL+QPV  VVE+WA  RWPKSKF+ +E+ + IGK     SVN
Sbjct: 329 LIDIANIFVVLHLIGAYQVLSQPVLNVVETWAIARWPKSKFVTNEYPISIGKQKLNISVN 388

Query: 379 FFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRKEIKRGTIC 438
             RL WR+A+V + T+I+M  PFFN++LA LGAI YWPM VYFP+EM+I +K+I+R T+ 
Sbjct: 389 LLRLTWRSAYVVIVTVIAMVLPFFNDILALLGAIGYWPMAVYFPVEMHIAQKKIQRQTVK 448

Query: 439 WFGLHLVNLVCLLAALAAGCGSIQGVNQALHTYKLFKF 476
           WF L L+NL+CL+ ++AA CG+IQG++ +L T+KLFKF
Sbjct: 449 WFCLQLMNLICLIVSIAAACGAIQGLDHSLQTHKLFKF 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092254|ref|XP_002309530.1| amino acid permease [Populus trichocarpa] gi|222855506|gb|EEE93053.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429371|ref|XP_002277865.1| PREDICTED: amino acid permease 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081570|emb|CBI20575.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429375|ref|XP_002277980.1| PREDICTED: amino acid permease 1 [Vitis vinifera] gi|296081573|emb|CBI20578.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225429367|ref|XP_002277817.1| PREDICTED: amino acid permease 8 [Vitis vinifera] gi|147818918|emb|CAN69377.1| hypothetical protein VITISV_008203 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081568|emb|CBI20573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255550968|ref|XP_002516532.1| amino acid transporter, putative [Ricinus communis] gi|223544352|gb|EEF45873.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225429369|ref|XP_002277844.1| PREDICTED: amino acid permease 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147797725|emb|CAN65173.1| hypothetical protein VITISV_035457 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.966 0.972 0.546 2.4e-138
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.947 0.941 0.541 5.8e-137
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 0.981 0.967 0.530 1.5e-136
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 0.945 0.916 0.520 7.3e-130
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 0.945 0.969 0.518 3.6e-128
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 0.966 0.970 0.505 1.4e-126
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.981 0.977 0.485 4e-122
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.857 0.877 0.465 2.6e-102
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.631 0.684 0.332 2.9e-48
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.669 0.725 0.291 7.6e-44
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 254/465 (54%), Positives = 328/465 (70%)

Query:    13 SVDPVKVANGEVDDDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLV 72
             +V+    A   VDDDGR +RTGT WTASAHIITA++GSGVLSLAW +AQLGW+ G   LV
Sbjct:     9 AVESGDAAVKSVDDDGREKRTGTFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGTTVLV 68

Query:    73 IFSGISLYTSGLLAECYRAPNSVK--RNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMV 130
              F+ I+ YTS LLA+CYR+P+S+   RNY Y   V++YLGG+K +  G+ QY  L G  +
Sbjct:    69 AFAIITYYTSTLLADCYRSPDSITGTRNYNYMGVVRSYLGGKKVQLCGVAQYVNLVGVTI 128

Query:   131 GYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLST 190
             GYTITASIS+VAI KSNCYH +GHKA C  S  PYM A GIV+I+LSQ+PNFHKLS+LS 
Sbjct:   129 GYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSI 188

Query:   191 IAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFAC 250
             IAA MSFSYA IG+GL+ A + SG   KT LTG  IG+D+TA++K W++FQAIG++AF+ 
Sbjct:   189 IAAVMSFSYASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSY 248

Query:   251 SYAAILIEIQDTLKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTG 310
             ++  ILIEIQDTL+SSPPE +VMK+A+ +   T T  Y++CGC+GYAA GN A G+ LT 
Sbjct:   249 AFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTD 308

Query:   311 FGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGK 370
             FGFYEP+WLID AN  I +HL+GAYQV AQP F  VE     +WP+S FIN E+   +  
Sbjct:   309 FGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPL 368

Query:   371 NNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFPMEMYIVRK 430
                K  VN FRL+WRT +V + T ++M FPFFN +L  LGA A+WP+TVYFP+ M+I + 
Sbjct:   369 LG-KCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQA 427

Query:   431 EIKRGTICWFGXXXXXXXXXXXXXXXGCGSIQGVNQALHTYKLFK 475
             ++K+ +  W                   GSI G+  ++ +YK FK
Sbjct:   428 KVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS
GO:0006865 "amino acid transport" evidence=IGI
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O80592AAP8_ARATHNo assigned EC number0.55980.96230.9684yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VI1616
amino acid permease (504 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 7e-95
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-12
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  292 bits (749), Expect = 7e-95
 Identities = 131/433 (30%), Positives = 199/433 (45%), Gaps = 40/433 (9%)

Query: 32  RTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRA 91
            T + W A  ++I AI+G+GVLSL +   QLGWI G+  LVI   ISLYT  LL +C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 92  PN--SVKRNYTYRDAVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCY 149
            +    KR  +Y D      G +    +       L G  + Y I A  ++ AI  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 150 HKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFHKLSWLSTIAASMSFSYAGIGMGLSFA 209
                   C  S   +++  G++ I LS IPN   LS LS +AA  S             
Sbjct: 121 T-------CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVI-------- 165

Query: 210 KIVSGHGEKTTLTGVEIGLDLTAAD-KTWRIFQAIGNMAFACSYAAILIEIQDTLKSSPP 268
            +V    E   LT   +G      + K  R+F AIG + FA    A+L+ IQ+T+K SP 
Sbjct: 166 -LVLSVAELGVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMK-SPS 223

Query: 269 EQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIV 328
           + + M K    A    T LY++ G +GY A GN+ +GNIL         WLID+AN  +V
Sbjct: 224 KFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLV 281

Query: 329 VHLLGAYQVLAQPVFGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAF 388
           +HLL +Y + A P+  +VE+         K  + +H                R++ R+  
Sbjct: 282 LHLLLSYPLQAFPIRQIVENLL-----FRKGASGKH---------NPKSKLLRVVIRSGL 327

Query: 389 VAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFP--MEMYIVRKEIK--RGTICWFGLHL 444
           V +  LI+++ PF  + L+ +GA +  P+T   P    + + + + K          L +
Sbjct: 328 VVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDV 387

Query: 445 VNLVCLLAALAAG 457
           + +V  L  +A G
Sbjct: 388 ICIVIGLLLMAYG 400

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.87
PRK15049499 L-asparagine permease; Provisional 99.71
PRK10655438 potE putrescine transporter; Provisional 99.7
PRK10249458 phenylalanine transporter; Provisional 99.7
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.68
PRK10644445 arginine:agmatin antiporter; Provisional 99.68
PRK10238456 aromatic amino acid transporter; Provisional 99.66
PRK10580457 proY putative proline-specific permease; Provision 99.64
PRK10836489 lysine transporter; Provisional 99.64
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.64
PRK10746461 putative transport protein YifK; Provisional 99.63
PRK11387471 S-methylmethionine transporter; Provisional 99.63
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.63
TIGR00906557 2A0303 cationic amino acid transport permease. 99.62
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.62
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.61
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.61
TIGR00930 953 2a30 K-Cl cotransporter. 99.6
PRK11021410 putative transporter; Provisional 99.6
TIGR00909429 2A0306 amino acid transporter. 99.58
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.58
TIGR00913478 2A0310 amino acid permease (yeast). 99.57
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.53
TIGR00911501 2A0308 L-type amino acid transporter. 99.53
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.51
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.51
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.43
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.41
COG0833541 LysP Amino acid transporters [Amino acid transport 99.36
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.33
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.32
COG0531466 PotE Amino acid transporters [Amino acid transport 99.3
PRK15238496 inner membrane transporter YjeM; Provisional 99.27
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.25
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.22
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.21
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.94
PF03845320 Spore_permease: Spore germination protein; InterPr 98.92
KOG3832319 consensus Predicted amino acid transporter [Genera 98.6
COG3949349 Uncharacterized membrane protein [Function unknown 98.53
PRK11375484 allantoin permease; Provisional 98.5
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.47
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.46
PRK12488549 acetate permease; Provisional 98.05
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.04
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.0
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.98
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.92
TIGR00813407 sss transporter, SSS family. have different number 97.81
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.78
COG1457442 CodB Purine-cytosine permease and related proteins 97.72
PRK11017404 codB cytosine permease; Provisional 97.7
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.57
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.47
PRK09395551 actP acetate permease; Provisional 97.38
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.33
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.18
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.1
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.06
PRK15419502 proline:sodium symporter PutP; Provisional 97.04
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 96.88
COG4147529 DhlC Predicted symporter [General function predict 96.88
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.75
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.29
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 96.14
PRK15015 701 carbon starvation protein A; Provisional 95.96
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.94
PRK10484523 putative transporter; Provisional 95.82
PRK00701439 manganese transport protein MntH; Reviewed 95.77
KOG1288 945 consensus Amino acid transporters [Amino acid tran 95.74
COG1966575 CstA Carbon starvation protein, predicted membrane 95.01
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 94.52
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.26
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 92.35
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 91.94
PF01566358 Nramp: Natural resistance-associated macrophage pr 91.89
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 91.79
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 91.0
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 87.4
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-57  Score=447.60  Aligned_cols=404  Identities=37%  Similarity=0.607  Sum_probs=356.9

Q ss_pred             CCCCCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcC--ccccccHHH
Q 011737           26 DDGRSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNS--VKRNYTYRD  103 (478)
Q Consensus        26 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~--~~~~~sy~~  103 (478)
                      ++..++|++||++++++.++.++|.|+|+||||++++||+.|++++++.++++.||..+|.+|++..+.  ++|.++|+|
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d  109 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD  109 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence            345668889999999999999999999999999999999999999999999999999999999876543  677899999


Q ss_pred             HHHHhccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhHhHHHHHHHhhCCCCCC
Q 011737          104 AVKNYLGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMMALGIVEILLSQIPNFH  183 (478)
Q Consensus       104 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pl~~~~~l~  183 (478)
                      +++++||+++++++.+.+.+.++|+|+.|++..+|++..+.+.+|.+..      ..+.+.|+++++++.+|++++||++
T Consensus       110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~  183 (437)
T KOG1303|consen  110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFH  183 (437)
T ss_pred             HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcc
Confidence            9999999999999999999999999999999999999999988766542      2335788999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHH-HHHhHHHHHHhhcchhHHHHHHh
Q 011737          184 KLSWLSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRI-FQAIGNMAFACSYAAILIEIQDT  262 (478)
Q Consensus       184 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~faf~~~~~~~~i~~~  262 (478)
                      .++++|..++++.+.+..+.+..++.++...+..+......      .+ .   .. ++++|++.|+|.+|...|+|+++
T Consensus       184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~-~---~~~f~a~g~iaFaf~gH~v~peIq~t  253 (437)
T KOG1303|consen  184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GT-I---PTVFTALGIIAFAYGGHAVLPEIQHT  253 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CC-C---cchhhhhhheeeeecCCeeeeehHhh
Confidence            99999999999999888888887777765543222111111      00 1   11 79999999999999999999999


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCccccccccccccCCchhHHHHHHHHHHHHHHHhhhhcccch
Q 011737          263 LKSSPPEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQGNILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPV  342 (478)
Q Consensus       263 m~~p~~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~  342 (478)
                      ||+|    ++|+|++.+++.+++.+|..+++.||++|||+++++++.|++  ++.|+...+|+++.+|++.+|.++..|.
T Consensus       254 Mk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl  327 (437)
T KOG1303|consen  254 MKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPL  327 (437)
T ss_pred             cCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcch
Confidence            9999    779999999999999999999999999999999999999996  6889999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHhhhh
Q 011737          343 FGVVESWAGNRWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAFPFFNEVLAFLGAIAYWPMTVYFP  422 (478)
Q Consensus       343 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~vi~l~Ga~~~~~l~fi~P  422 (478)
                      .+.+|+....+.++  +.+              +....|...|+.+++.+.++|..+|+|+++++++||....++++++|
T Consensus       328 ~~~~E~~~~~~~~~--~~~--------------~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP  391 (437)
T KOG1303|consen  328 FDVVEKLIGVKHPD--FKK--------------RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILP  391 (437)
T ss_pred             HHHHHHHhccCCcc--ccc--------------cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHH
Confidence            99999998754321  100              12368999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011737          423 MEMYIVRKEIKRGTICWFGLHLV-NLVCLLAALAAGCGSIQGVNQA  467 (478)
Q Consensus       423 ~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~i~~~  467 (478)
                      +++|++.+|++++..+|..+|.+ .++|+++++....++++.++.+
T Consensus       392 ~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  392 CLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999998999999988 7999999999999999888753

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.77
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.64
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.46
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.68
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.15
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.73
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 91.73
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.77  E-value=8.1e-17  Score=164.27  Aligned_cols=366  Identities=11%  Similarity=-0.006  Sum_probs=206.3

Q ss_pred             CCcccccHHHHHHHHHhhhhhhhHhhhHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHh
Q 011737           29 RSRRTGTVWTASAHIITAIVGSGVLSLAWGLAQLGWIIGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNY  108 (478)
Q Consensus        29 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~af~~~G~~~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~  108 (478)
                      +++|+.+.+++++..+++++|+|++.+|....+.|. .+++.+++.+++.........|.... .|.  ..++.+..++.
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~-~p~--~Gg~y~~~~~~   80 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFL-DPS--PGGSYAYARRC   80 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHH-CCC--TTTHHHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHcc-CCC--CCCchhhHHhH
Confidence            456889999999999999999999999999888896 37777788888888888887775332 221  23677789999


Q ss_pred             ccCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhhhccccCCCCCCccccCCchhH-hHHHHHHHhhCCCCCCcchH
Q 011737          109 LGGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKSNCYHKEGHKAPCKYSYNPYMM-ALGIVEILLSQIPNFHKLSW  187 (478)
Q Consensus       109 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~pl~~~~~l~~l~~  187 (478)
                      +||+.+++..+..++........+....++++..+.+.     .      ..+...+.+ +..+++.-....+..+...+
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----L------KDPWVLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----G------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----c------cccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            99999999999999888777777777777766544321     0      000111111 11111222222344444445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCCcccccccccccCcchhhhhhHHHHHhHHHHHHhhcchhHHHHHHhhcCCC
Q 011737          188 LSTIAASMSFSYAGIGMGLSFAKIVSGHGEKTTLTGVEIGLDLTAADKTWRIFQAIGNMAFACSYAAILIEIQDTLKSSP  267 (478)
Q Consensus       188 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~  267 (478)
                      ++.+.....+...++++...+.+   .++... .+  +|.+  ....+..++..++....|+|.|.+....+.+|+||| 
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p-  220 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFW---FRGETY-MA--AWNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP-  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTT---CCCCCC-CC--C-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hChhhc-cc--ccCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc-
Confidence            54444433332221121211111   111110 01  1110  111223467889999999999999999999999998 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccc----ccccccccCCchhHHHHHHHHHHHHHHHhhhhcccchH
Q 011737          268 PEQEVMKKANTIATFTATTLYLMCGCLGYAALGNHAQG----NILTGFGFYEPFWLIDLANFFIVVHLLGAYQVLAQPVF  343 (478)
Q Consensus       268 ~~~~~~~~~~~~a~~~~~~lY~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~  343 (478)
                        +|+.+|++..+..++.++|+...+......+.+...    ....-+......+...+..+...+..+.+.--......
T Consensus       221 --~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s  298 (445)
T 3l1l_A          221 --KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAG  298 (445)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             --cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              588999999999999999998887766666543211    11111100012334445555555555554433333333


Q ss_pred             HHHHHHhhc-cCCCCccCCcccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHhhhhhhhHH
Q 011737          344 GVVESWAGN-RWPKSKFINDEHHLGIGKNNSKFSVNFFRLIWRTAFVAMATLISMAF----PFFNEVLAFLGAIAYWPMT  418 (478)
Q Consensus       344 ~~l~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~----p~~~~vi~l~Ga~~~~~l~  418 (478)
                      +.+...-.+ ..|  ++..+.+..+.|         ...+.+..++..+ ..+....    ..++.+.++.+  ....+.
T Consensus       299 R~~~~~a~dg~lP--~~~~~~~~~~~P---------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~  364 (445)
T 3l1l_A          299 QTAKAAADDGLFP--PIFARVNKAGTP---------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLVP  364 (445)
T ss_dssp             HHHHHHHHTTSSC--GGGGCCCTTCCC---------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHhCCCCc--HHHHhcCCCCCC---------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHHH
Confidence            333332221 122  111221111233         2222222222111 1111112    34566666655  345788


Q ss_pred             hhhhHHHHHHHhcCCC
Q 011737          419 VYFPMEMYIVRKEIKR  434 (478)
Q Consensus       419 fi~P~l~~~~~~~~~~  434 (478)
                      |+++++.+++.++++.
T Consensus       365 y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          365 YLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHhhcCc
Confidence            9999999888876543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 95.93
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.93  E-value=0.81  Score=44.12  Aligned_cols=108  Identities=16%  Similarity=0.019  Sum_probs=65.0

Q ss_pred             cHHHHHHHHHhhhhhhh-HhhhHHHHHh-hChH---HHHHHHHHHHHHHHHHHHHHHHhhcCCcCccccccHHHHHHHhc
Q 011737           35 TVWTASAHIITAIVGSG-VLSLAWGLAQ-LGWI---IGIATLVIFSGISLYTSGLLAECYRAPNSVKRNYTYRDAVKNYL  109 (478)
Q Consensus        35 s~~~a~~~l~~~~iG~G-iL~lP~af~~-~G~~---~g~~~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~sy~~l~~~~~  109 (478)
                      |-.+-++..++..+|.| +.-.||-..+ .|..   +=++++++++.=..+-=..+.+..++ .+   ...+..+.....
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-g~---i~~~~~i~~~~~   81 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-QG---HGTTPAIFYLLW   81 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TT---CCSHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cc---ccHHHHHHHHhc
Confidence            45678889999999999 6679999755 4521   11222222222222222233332222 12   347777777776


Q ss_pred             cCcceeehHHHHHHHHhhhHHHHHHHHhhhHHHHHhh
Q 011737          110 GGRKYKALGLVQYTLLCGAMVGYTITASISMVAISKS  146 (478)
Q Consensus       110 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~i~~~  146 (478)
                      +.+....+++...+..+..++-|.+..+-.+..+.+.
T Consensus        82 ~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          82 RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555556677777777777788888777776665543