Citrus Sinensis ID: 011752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MRQESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAETTQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISPQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHccccccccccccccccccccccEEEEcccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHccccccEEEEcccccccccccHHcccccHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHcccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccccccccccccccccccccccEcccHHHHHccccccccccccccccccEEEEccccccccccHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEccHHHHHHcHHHHHcccccccccccccEcccccccccccccccccHHHHccHHHHHccccccccc
Coil and Loop (DISEMBL)
MRQESKDPAIRLfgkkiafpsdgevpvifseelpspaakeecsiEAEEEKAEEDSSAVKAAettqqddttppnideskipespeanvnpktpsiddetakskaakseksqndasnsnsqektlkkpdkilpcprcnsmdtkfcyynnyninqprhFCKACQRYwtaggtmrnvpvgagrrknkncasqYRHITISEALQAAridapngishpsvksngrvlsfgldapicdSMASVLNLAEKKvlngtrngfhgfqeqeipvpcrggengddcssgssitvsnpmeevgrngmqeplmrsingfpspipclpgvpwpypwnasvpppafcpsgfpmsfypaafwncgipstwnmpwispqsspnqkspssgpnsptlgkhsrdadmiksenmdkeelskeknrcvlvpktlriddpneaakSSIWATLgikneslaggrlfkglqsksdekshmaetspvlranpaalsrslnfhest
Flexible Loop (DISEMBL)
mrqeskdpairlfgkkiafpsdgEVPVIFSEELPSPAAKEECSIEAEEekaeedssavkaaettqqddttppnideskipespeanvnpktpsiddETAKSKaakseksqndasnsnsqektlkkpdkilpcPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTmrnvpvgagrrknkncaSQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISPQSspnqkspssgpnsptlgkhsrdaDMIKsenmdkeelskeknrcvlvpktlriddpneaakssiwatlgikneslagGRLFKGLQSKSDEKSHMaetspvlranpaalsrslnfhest
Low Complexity Region (SEG)
MRQESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPaakeecsieaeeekaeedssavkaaeTTQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETakskaakseksQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWIspqsspnqkspssgpnspTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST
Disordered region (IsUnstruct)
**********RLFGKKIAFP****VPVI****************************************************************************************************ILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARID************NGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQ*********************************************NGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWI**********************************************CVLVPKTLRI********SSIWATLGIKNESLAGGRL**************************************
Disordered Region (DISOPRED)
*****KD**IRLFGKKIAFPS****************************************************************************************************************RCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNV**************************************************************************************************************************************IPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPST******************************************************LVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGR**********************RANPAALSRSLNF****
Disordered Region (DISEMBL)
MRQESKDPAIRLFGKKIAFPSDGEVPVIFSEEL***************************************NIDESKIPES*****************************************KKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWIS***********************RDADMIKSENM********KNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGL*************SPVLRANPAALSRSLNFHEST
Disordered Region (DISPRO)
*****KDPAIRLFGKKIAFPSD***************************************************************************************************TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGR**********RHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFH**********************************************SINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISP*****************************************KNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNE******L*K************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRQESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSxxxxxxxxxxxxxxxxxxxxxQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISPQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	478	2.2.26 [Sep-21-2011]
Q8LFV3	448	Cyclic dof factor 3 OS=Ar	yes	no	0.901	0.962	0.496	1e-103
Q93ZL5	457	Cyclic dof factor 2 OS=Ar	no	no	0.872	0.912	0.435	6e-83
Q8W1E3	298	Cyclic dof factor 1 OS=Ar	no	no	0.546	0.875	0.446	3e-64
Q9SEZ3	399	Cyclic dof factor 5 OS=Ar	no	no	0.554	0.664	0.381	4e-45
Q9LQX4	366	Dof zinc finger protein D	no	no	0.608	0.795	0.316	1e-37
P68350	175	Dof zinc finger protein D	no	no	0.125	0.342	0.833	3e-28
O22967	170	Cyclic dof factor 4 OS=Ar	no	no	0.230	0.647	0.466	6e-28
Q39088	253	Dof zinc finger protein D	no	no	0.217	0.411	0.443	2e-22
Q8LDR0	307	Dof zinc finger protein D	no	no	0.112	0.175	0.759	1e-21
Q9M2U1	323	Dof zinc finger protein D	no	no	0.144	0.213	0.579	2e-21

>sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3 OS=Arabidopsis thaliana GN=CDF3 PE=1 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/491 (49%), Positives = 296/491 (60%), Gaps = 60/491 (12%)

Query: 1   MRQESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKA 60
           M  E++DPAI+LFG KI FPS  E  V   ++            E ++    +D S  K 
Sbjct: 1   MMMETRDPAIKLFGMKIPFPSVFESAVTVEDD------------EEDDWSGGDDKSPEKV 48

Query: 61  AETTQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSK-AAKSEKSQNDASNSNSQ 119
                    TP   D++    +  +  N K  ++D E A S    +S  +  D   +   
Sbjct: 49  ---------TPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPD 99

Query: 120 EKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGR 179
            KTLKKP KILPCPRC SM+TKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGR
Sbjct: 100 GKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGR 159

Query: 180 RKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAP---ICDSMASV 236
           RKNK+ +S YRHITISEAL+AAR+D       P +++N RVLSFGL+A    +   M  V
Sbjct: 160 RKNKSSSSHYRHITISEALEAARLD-------PGLQANTRVLSFGLEAQQQHVAAPMTPV 212

Query: 237 LNLAE-KKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPM---EEVGRNG 292
           + L E +KV NG RN FHG  +Q +       ENGDDCSSGSS+T SN     E   ++G
Sbjct: 213 MKLQEDQKVSNGARNRFHGLADQRLVARV---ENGDDCSSGSSVTTSNNHSVDESRAQSG 269

Query: 293 --MQEPLMRSINGFPSPIPCLPGVPWPYPWN-ASVPPPAFCPSGFPMSFYPAAFWNCGIP 349
             ++  +  + N   +   C+PGVPWPY WN A  PP  + P G+PM FYP         
Sbjct: 270 SVVEAQMNNNNNNNMNGYACIPGVPWPYTWNPAMPPPGFYPPPGYPMPFYPY-------- 321

Query: 350 STWNMPWISP-QSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVP 408
             W +P + P QSS       S  NSPTLGKH RD    K +N   E   K+K  CVLVP
Sbjct: 322 --WTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDN---ETERKQKAGCVLVP 376

Query: 409 KTLRIDDPNEAAKSSIWATLGIKNESL--AGGRLFKGLQSKSDEKSH-MAETSPVLRANP 465
           KTLRIDDPNEAAKSSIW TLGIKNE++  AGG +FKG   K+   ++  AE SPVL ANP
Sbjct: 377 KTLRIDDPNEAAKSSIWTTLGIKNEAMCKAGG-MFKGFDHKTKMYNNDKAENSPVLSANP 435

Query: 466 AALSRSLNFHE 476
           AALSRS NFHE
Sbjct: 436 AALSRSHNFHE 446

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2

 Score =  308 bits (789), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 222/510 (43%), Positives = 281/510 (55%), Gaps = 93/510 (18%)

Query: 7   DPAIRLFGKKIAFPSDG---------------EVPVIFSEELPSPAAKEECSIEA-EEEK 50
           DPAI+LFGK I  P  G               ++PV  S+        EE        E+
Sbjct: 3   DPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREE 62

Query: 51  AEEDSSAVKAAETTQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQ 110
            ++       +ET ++++      +ES   ES   +V   T  I ++T  +KAAK+  ++
Sbjct: 63  GDDVGDGGGESETDKKEEKDSECQEESLRNES--NDVTTTTSGITEKTETTKAAKT--NE 118

Query: 111 NDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTM 170
                + SQE  LKKPDKILPCPRCNSM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTM
Sbjct: 119 ESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTM 178

Query: 171 RNVPVGAGRRKNKNCASQY-RHITIS--EALQ-AARIDAPNGISHPSVKSNGRVLSFGLD 226
           RNVPVGAGRRKNK+ AS Y RH++I+  EA+Q  AR D    + HP   +   +L+FG D
Sbjct: 179 RNVPVGAGRRKNKSPASHYNRHVSITSAEAMQKVARTD----LQHP---NGANLLTFGSD 231

Query: 227 APICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPME 286
           + +C+SMAS LNL EK +L  T+       E                  G  ITV  P+ 
Sbjct: 232 SVLCESMASGLNLVEKSLLK-TQTVLQEPNE------------------GLKITV--PLN 270

Query: 287 EVGRN-GMQEPLMRSINGFPSPIPCLPGVP--WPYPWNASVPPPAFCPSGFPMSFY-PAA 342
           +     G   PL +        +PC PG P  WPY WN          S   + FY P A
Sbjct: 271 QTNEEAGTVSPLPK--------VPCFPGPPPTWPYAWNGV--------SWTILPFYPPPA 314

Query: 343 FWNC-GI-PSTWN-MPWISPQSSPNQKSPS-SGPNSPTLGKHSRDADMIKSENM--DKEE 396
           +W+C G+ P  WN   W+     P   SPS S PNSPTLGKHSRD +  +      + E 
Sbjct: 315 YWSCPGVSPGAWNSFTWM-----PQPNSPSGSNPNSPTLGKHSRDENAAEPGTAFDETES 369

Query: 397 LSKEKN---RCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSH 453
           L +EK+   RC+ VPKTLRIDDP EAAKSSIW TLGIK +  A    F   +S + EKS 
Sbjct: 370 LGREKSKPERCLWVPKTLRIDDPEEAAKSSIWETLGIKKDENAD--TFGAFRSSTKEKSS 427

Query: 454 MAE-----TSPVLRANPAALSRSLNFHEST 478
           ++E       P L+ANPAALSRS NFHES+
Sbjct: 428 LSEGRLPGRRPELQANPAALSRSANFHESS 457

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2

 Score =  246 bits (628), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/376 (44%), Positives = 196/376 (52%), Gaps = 115/376 (30%)

Query: 107 EKSQNDA-SNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWT 165
           EK+QN   ++ + ++KTLKKP KILPCPRCNSM+TKFCYYNNYN+NQPRHFCKACQRYWT
Sbjct: 30  EKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWT 89

Query: 166 AGGTMRNVPVGAGRRKNKNCA--SQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSF 223
           +GGTMR+VP+GAGRRKNKN +  S Y H+TISE                   +NG VLSF
Sbjct: 90  SGGTMRSVPIGAGRRKNKNNSPTSHYHHVTISE-------------------TNGPVLSF 130

Query: 224 GLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSN 283
            L     D   S      +K++                      EN D+           
Sbjct: 131 SLGD---DQKVSSNRFGNQKLVARI-------------------ENNDE----------- 157

Query: 284 PMEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAF 343
                          RS N   + + C PGV WPY WN     PAF P       YP  +
Sbjct: 158 ---------------RSNNNTSNGLNCFPGVSWPYTWN-----PAFYP------VYP--Y 189

Query: 344 WNCGIPSTWNMPWISPQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNR 403
           W                S P   SP S   + TLGKHSRD D    +        K++N 
Sbjct: 190 W----------------SMPVLSSPVSSSPTSTLGKHSRDEDETVKQ--------KQRNG 225

Query: 404 CVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEK---SHMAETSPV 460
            VLVPKTLRIDDPNEAAKSSIW TLGIKNE      +F G  SK + K       ETS V
Sbjct: 226 SVLVPKTLRIDDPNEAAKSSIWTTLGIKNEV-----MFNGFGSKKEVKLSNKEETETSLV 280

Query: 461 LRANPAALSRSLNFHE 476
           L ANPAALSRS+NFHE
Sbjct: 281 LCANPAALSRSINFHE 296

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEZ3|CDF5_ARATH Cyclic dof factor 5 OS=Arabidopsis thaliana GN=CDF5 PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 175/362 (48%), Gaps = 97/362 (26%)

Query: 123 LKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKN 182
           LKKPDK++PCPRC S +TKFCYYNNYN+NQPR+FC+ CQRYWTAGG+MRNVPVG+GRRKN
Sbjct: 125 LKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKN 184

Query: 183 KNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEK 242
           K   S   +      LQ    D  N  S       G +LSFG       S +SV      
Sbjct: 185 KGWPSSNHY------LQVTSEDCDNNNS-------GTILSFG------SSESSV------ 219

Query: 243 KVLNGTRNGFHGFQEQEIPVPCRGGENGDDCS-SGSSITVSNPMEEVGRNGMQEPLMRSI 301
                T  G H              ++GD    S  S++  N               +S 
Sbjct: 220 -----TETGKH--------------QSGDTAKISADSVSQEN---------------KSY 245

Query: 302 NGFPSPIPCLP--GVPWPYPWNASVPPPAFCPSGFPMSFYPAAF-WNCGIPSTWNMPWIS 358
            GF  P   LP    PWPY W+         P+G   SFYP  F W C +P       I 
Sbjct: 246 QGFLPPQVMLPNNSSPWPYQWS---------PTGPNASFYPVPFYWGCTVP-------IY 289

Query: 359 PQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNE 418
           P S            S  LGK SRD    +         +    R  LV ++LR++   E
Sbjct: 290 PTSE----------TSSCLGKRSRDQTEGRIN---DTNTTITTTRARLVSESLRMNI--E 334

Query: 419 AAKSSIWATLGIKNE-SLAGGRLFKGLQSK--SDEKSHMAETSPVLRANPAALSRSLNFH 475
           A+KS++W+ L  K E    G  LF G  +K  S+  S ++ETS  L+ANPAA+SR++NF 
Sbjct: 335 ASKSAVWSKLPTKPEKKTQGFSLFNGFDTKGNSNRSSLVSETSHSLQANPAAMSRAMNFR 394

Query: 476 ES 477
           ES
Sbjct: 395 ES 396

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQX4|DOF13_ARATH Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 179/392 (45%), Gaps = 101/392 (25%)

Query: 94  IDDETAKSKAAKSEKSQNDASNSNSQEKT--LKKPDKILPCPRCNSMDTKFCYYNNYNIN 151
           +++E+ ++     ++     + ++ +EKT  LKKPDKILPCPRCNS DTKFCYYNNYN+N
Sbjct: 67  LNNESKETSENSDDQHSEITTITSEEEKTTELKKPDKILPCPRCNSADTKFCYYNNYNVN 126

Query: 152 QPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISH 211
           QPRHFC+ CQRYWTAGG+MR VPVG+GRRKNK   S        + L     D  N  S 
Sbjct: 127 QPRHFCRKCQRYWTAGGSMRIVPVGSGRRKNKGWVSS------DQYLHITSEDTDNYNS- 179

Query: 212 PSVKSNGRVLSFGLDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGD 271
               S+ ++LSF                                            E+ D
Sbjct: 180 ----SSTKILSF--------------------------------------------ESSD 191

Query: 272 DCSSGSSITVSNPMEEVGRNGMQEPLMRSINGF-----PSPIPCLPGVPWPYPWNASVPP 326
              +      SN   EV  N   EP+ +  N F     P   P  P  PWPY +    P 
Sbjct: 192 SLVTERPKHQSN---EVKINA--EPVSQEPNNFQGLLPPQASPVSP--PWPYQY---PPN 241

Query: 327 PAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISPQSSPNQKSPSSGPNSPTLGKHSRDADM 386
           P+F        ++   +W C IP  W                S+   S  LGK +RD   
Sbjct: 242 PSF--------YHMPVYWGCAIP-VW----------------STLDTSTCLGKRTRDE-- 274

Query: 387 IKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLF-KGLQ 445
              E + + + + E+   +L  ++++ ++ + A  + +W  + +  E       F  G +
Sbjct: 275 TSHETVKESKNAFERTSLLLESQSIK-NETSMATNNHVWYPVPMTREKTQEFSFFSNGAE 333

Query: 446 SKSDEKSHMAETSPVLRANPAALSRSLNFHES 477
           +KS     + ET   L+ANPAA++RS+NF ES
Sbjct: 334 TKSSNNRFVPETYLNLQANPAAMARSMNFRES 365

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|P68350|DOF15_ARATH Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query: 124 KKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK 183
           K+PDKI+PCPRC SM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +RNVPVGAGRRK+K
Sbjct: 56  KRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSK 115

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|O22967|CDF4_ARATH Cyclic dof factor 4 OS=Arabidopsis thaliana GN=CDF4 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 77/133 (57%), Gaps = 23/133 (17%)

Query: 51  AEEDSSAVKAAETTQQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQ 110
           A +DS  +K    T   +T     +E   P   EA +  ++ S  D TA+          
Sbjct: 2   ATQDSQGIKLFGKTIAFNTRTIKNEEETHPPEQEATIAVRSSSSSDLTAE---------- 51

Query: 111 NDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTM 170
                        K+PDKI+ CPRC SM+TKFCY+NNYN+NQPRHFCK C RYWTAGG +
Sbjct: 52  -------------KRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGAL 98

Query: 171 RNVPVGAGRRKNK 183
           RNVPVGAGRRK+K
Sbjct: 99  RNVPVGAGRRKSK 111

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39088|DOF34_ARATH Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4 PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 72/124 (58%), Gaps = 20/124 (16%)

Query: 130 LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK----NKNC 185
           LPCPRC+S +TKFCYYNNYN +QPRHFCKAC+RYWT GGT+R+VPVG G RK    ++ C
Sbjct: 30  LPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAKRSRTC 89

Query: 186 ASQYRHITISEA-------LQAARIDAP-----NGISHPSVKSNGRVLSFGLDAPICDSM 233
           ++                 LQ   +  P     NG++H   +S+G+    G    +C S 
Sbjct: 90  SNSSSSSVSGVVSNSNGVPLQTTPVLFPQSSISNGVTHTVTESDGK----GSALSLCGSF 145

Query: 234 ASVL 237
            S L
Sbjct: 146 TSTL 149

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDR0|DOF54_ARATH Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 130 LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK 183
           L CPRCNS++TKFCYYNNYN++QPRHFCK C+RYWT GG +RNVPVG G RK K
Sbjct: 51  LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAK 104

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2U1|DOF36_ARATH Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 53/69 (76%)

Query: 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNC 185
           P+  L CPRC+S +TKFCY+NNY++ QPRHFCK C+RYWT GG++RNVPVG G R+NK  
Sbjct: 72  PEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNKRS 131

Query: 186 ASQYRHITI 194
            S+ +   +
Sbjct: 132 KSRSKSTVV 140

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
344190178	471	DOF domain class transcription factor [C	0.976	0.991	0.682	0.0
256387096	471	Dof1 protein [Jatropha curcas]	0.953	0.968	0.670	1e-174
302398775	465	DOF domain class transcription factor [M	0.962	0.989	0.650	1e-169
356562852	471	PREDICTED: dof zinc finger protein DOF3.	0.945	0.959	0.639	1e-165
255635892	471	unknown [Glycine max]	0.945	0.959	0.635	1e-163
255547377	488	zinc finger protein, putative [Ricinus c	0.985	0.965	0.662	1e-163
225452849	511	PREDICTED: dof zinc finger protein DOF5.	0.989	0.925	0.589	1e-162
356512105	473	PREDICTED: dof zinc finger protein DOF3.	0.972	0.983	0.650	1e-161
225457399	473	PREDICTED: dof zinc finger protein DOF3.	0.972	0.983	0.623	1e-154
147866358	473	hypothetical protein VITISV_035904 [Viti	0.972	0.983	0.619	1e-153

>gi|344190178|gb|AEM97871.1| DOF domain class transcription factor [Corylus heterophylla]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/479 (68%), Positives = 383/479 (79%), Gaps = 12/479 (2%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELP-SPAAKEECSIEAEEEKAEEDSSAVKAA 61
           QE+KDPAIRLFGKKI+ PSDG+ P +  ++   + + KE+C       +        +  
Sbjct: 2   QENKDPAIRLFGKKISLPSDGDNPTVSGDDFSVNTSEKEKCG------RVRGAEEEEEEE 55

Query: 62  ETTQQDDTTPPNIDESKIPES-PEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQE 120
           ET +      PN +E    E+ P ANVNPKTPSI++E A +  AK+EK Q+D +NS  QE
Sbjct: 56  ETEKDPPAAYPNTEEPTDSETLPGANVNPKTPSIEEEKANANTAKTEKEQSDTTNS--QE 113

Query: 121 KTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRR 180
           KTLKKPDKILPCPRCNSMDTKFCYYNNYN++QPRHFCKACQRYWTAGGTMRNVPVGAGRR
Sbjct: 114 KTLKKPDKILPCPRCNSMDTKFCYYNNYNVHQPRHFCKACQRYWTAGGTMRNVPVGAGRR 173

Query: 181 KNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLA 240
           KNKN AS YR ITIS+ALQ AR+DA NG  +P++KSNGRVLSFGLD PICDSMASVL+LA
Sbjct: 174 KNKNSASHYRQITISDALQVARMDASNGTHYPTLKSNGRVLSFGLDVPICDSMASVLSLA 233

Query: 241 EKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSS-ITVSNPMEEVGRNGMQEPLMR 299
           +KKVLNG +NGFH F+EQ IPVP +G ENGDDCSSGSS ITVSN ME  G++   EP  +
Sbjct: 234 DKKVLNGAQNGFHSFEEQRIPVPGKGRENGDDCSSGSSNITVSNSMEG-GKHCPPEPFAQ 292

Query: 300 SINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISP 359
           +INGFP  IPCLPGVPWPY WN++VPPPA CP GFPM FYP A+WNCG+P TWN+PW+SP
Sbjct: 293 NINGFPPQIPCLPGVPWPYQWNSAVPPPALCPPGFPMPFYPTAYWNCGVPGTWNVPWLSP 352

Query: 360 QSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEA 419
           Q SPNQKSPSS P+SPTLGKH RD DM+K +N+++EE  K+KN C+LVPKTLRIDDP+EA
Sbjct: 353 QPSPNQKSPSSAPHSPTLGKHPRDGDMLKPDNLEREEPPKQKNGCILVPKTLRIDDPSEA 412

Query: 420 AKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST 478
           AKSSIWATLGIKNES+ GG +FK  QSK DEK  +AETS VL ANPAALSRSLNFHE++
Sbjct: 413 AKSSIWATLGIKNESICGGGMFKAFQSKGDEKHRIAETSAVLLANPAALSRSLNFHENS 471

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|256387096|gb|ACU80550.1| Dof1 protein [Jatropha curcas]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 321/479 (67%), Positives = 375/479 (78%), Gaps = 23/479 (4%)

Query: 5   SKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAETT 64
           SKD AI+LFGKKI   SD + P I  +ELPS    EE     E EK E+DSSA    ET+
Sbjct: 11  SKDSAIKLFGKKIPLKSDSDPPAISCDELPSWERVEE----GEAEKTEKDSSAGNVKETS 66

Query: 65  QQDDTTPPNIDESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEKTLK 124
           Q+DDT     +ES      E N NPKTPSI +E+AKSK +++EK QND +N+ +QEK LK
Sbjct: 67  QEDDT-----EES---SDQETNENPKTPSISEESAKSKISETEKEQNDPANTTTQEKALK 118

Query: 125 KPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKN 184
           KPDKILPCPRCNSMDTKFCYYNNYN+NQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK+
Sbjct: 119 KPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKH 178

Query: 185 CASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAEKKV 244
            AS YRHITISEALQAARI+APNG  +P++K+NGRVLSFGLD P CDSMASVLNLA++ V
Sbjct: 179 SASHYRHITISEALQAARIEAPNGTHNPALKTNGRVLSFGLDTPTCDSMASVLNLADQNV 238

Query: 245 LNG-TRNGFHGFQEQ-EIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSIN 302
           LNG TRNGFH  + Q +I   C+G ENGDDCSS SS+TVSN +EE G+   QE +M+++N
Sbjct: 239 LNGATRNGFHNLEGQKKILGSCKGRENGDDCSSASSVTVSNSVEEGGKICQQEHIMQNVN 298

Query: 303 GFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNM---PWISP 359
           GF SPI CLPGVPWPYPWN+++PPP FCP G+PMSFYP  F N G    WN+      S 
Sbjct: 299 GFASPIQCLPGVPWPYPWNSALPPPVFCPPGYPMSFYP-PFGNYG----WNIPLLSPQSS 353

Query: 360 QSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEA 419
            SS NQK+ SS PNSPTLGKHSRD D +K ++++KEE  K KN CVLVPKTLRIDDP EA
Sbjct: 354 SSSTNQKAQSS-PNSPTLGKHSRDGDALKQDDLEKEESPKRKNGCVLVPKTLRIDDPTEA 412

Query: 420 AKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST 478
           AKSSIWATLGIKNE+ + G LFK  QSK++EK+H+ +TSPVL ANPAALSRS+NFHES+
Sbjct: 413 AKSSIWATLGIKNETYSSGGLFKSFQSKNNEKNHVNKTSPVLHANPAALSRSINFHESS 471

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398775|gb|ADL36682.1| DOF domain class transcription factor [Malus x domestica]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 311/478 (65%), Positives = 370/478 (77%), Gaps = 18/478 (3%)

Query: 4   ESKDPAIRLFGKKIAFPSDGE-VPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
           E+KDPAI+LFGKKIA P+D E +      E       EE   E E+E+ E+DS + K+ E
Sbjct: 3   ETKDPAIKLFGKKIALPADIEDLGFARPVEKEVEVESEEEDEEEEDEETEQDSPSRKSTE 62

Query: 63  TTQQDDTTPPNI-DESKIPESPEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEK 121
           + +QDD +PP   D + +   P++NVNPKTPS D+ +A SK A++EK   + S  NS+EK
Sbjct: 63  SIEQDDGSPPKTEDPANLEILPDSNVNPKTPSTDEASALSKTAQTEK---EPSTENSEEK 119

Query: 122 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 181
            LKKPDKILPCPRCNSMDTKFCYYNNYN+NQPRHFCKACQRYWTAGGTMRNVPVGAGRRK
Sbjct: 120 ALKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 179

Query: 182 NKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAE 241
           NKN AS YRH TI+EALQAARIDAPNG  HP++KSNGRVLSFG+D PICD MASVLNLA+
Sbjct: 180 NKNSASHYRHFTITEALQAARIDAPNGAHHPALKSNGRVLSFGVDVPICDPMASVLNLAD 239

Query: 242 KKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSI 301
           K V + TRNG H  +EQ    PC+  ENGDD SS SS+             + +P + ++
Sbjct: 240 KNVSSSTRNGLHKGEEQVFRAPCKSRENGDDSSSASSVN------------VSKPHLVNV 287

Query: 302 NGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWISPQ- 360
           NGF S IPCLPGVPWPYPWNA+VPPPAFCP GFP+SF  A +WNCG+P TWN+PW  PQ 
Sbjct: 288 NGFSSQIPCLPGVPWPYPWNAAVPPPAFCPPGFPLSFCAAPYWNCGVPGTWNVPWFGPQP 347

Query: 361 SSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDDPNEAA 420
           ++PNQKSP S  NSPTLGKHSRD D+++ EN++KEE S++KN CVLVPKTLRIDDP+EAA
Sbjct: 348 ATPNQKSPHSSSNSPTLGKHSRDEDVVRPENLEKEEPSRQKNGCVLVPKTLRIDDPSEAA 407

Query: 421 KSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFHEST 478
           KSSIWATLGIKN+S++G  LFK  Q KSD+K  + ETSP +RANPAALSRSLNFHES+
Sbjct: 408 KSSIWATLGIKNDSISGKGLFKAFQPKSDQKKTVPETSPAMRANPAALSRSLNFHESS 465

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562852|ref|XP_003549682.1| PREDICTED: dof zinc finger protein DOF3.3 [Glycine max]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 316/494 (63%), Positives = 369/494 (74%), Gaps = 42/494 (8%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
            E +DPAIRLFG+KI FP D                     ++ EEE AE+    ++  E
Sbjct: 2   HEIRDPAIRLFGQKIPFPED---------------------VDKEEESAEDREQEMEEHE 40

Query: 63  TTQQDDTTPPNI-------------DESKIP-ESPEANVNPKTPSIDDETAKSKAAKSEK 108
                DT   N+             +E+KI   SPEA VNPKTPSI++ETAKSK  KSEK
Sbjct: 41  DEGDKDTRVENVTKEELEADPPLDAEETKISGTSPEAIVNPKTPSIEEETAKSKGGKSEK 100

Query: 109 SQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGG 168
            Q DA+NS  QEKTLKKPDK+LPCPRC SMDTKFCYYNNYN+NQPR+FCKACQRYWTAGG
Sbjct: 101 EQGDAANS--QEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGG 158

Query: 169 TMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLD-- 226
           TMRNVPVGAGRRKNKN  S YRHITISEALQAARIDA NG   P++K NGRVLSFGLD  
Sbjct: 159 TMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAQNGTHLPTLKGNGRVLSFGLDAH 218

Query: 227 APICDSMASVLNLAEKKVLNGTRNGF-HGFQEQEIPVPCRGGENGDDCSSGSSITVSNPM 285
           APICDSMAS++NL EKK LNGTRNGF HGF++Q +PVPC+ GENGDD S+ SSIT+S+P 
Sbjct: 219 APICDSMASLMNLGEKKALNGTRNGFHHGFEDQRLPVPCKSGENGDDSSTTSSITISSPK 278

Query: 286 EEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWN 345
            E  ++  Q+  +   +GF   +PC+PGVPWPY WN+ VPPPA CPSGFP+ FYPA FWN
Sbjct: 279 GENNKSTFQQQPLPQNHGFLPQVPCIPGVPWPYTWNSPVPPPALCPSGFPLPFYPATFWN 338

Query: 346 CGIPSTWNMPWISPQS-SPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRC 404
           CG+P  WN+PW S  S + N KSPSS PNSPTLGKHSRD+DMIK +++ KEE S  +N  
Sbjct: 339 CGMPGNWNVPWFSSSSPASNLKSPSSSPNSPTLGKHSRDSDMIKQDSLHKEEASTPRNGS 398

Query: 405 VLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRAN 464
           VLVPKTLRIDDP+EAAKSSIWATLGIKNES++GG +FK  QSK  EK+H+ E SP+L AN
Sbjct: 399 VLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGAMFKAFQSKKGEKNHV-EASPMLMAN 457

Query: 465 PAALSRSLNFHEST 478
           PAALSRSLNFHE++
Sbjct: 458 PAALSRSLNFHENS 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635892|gb|ACU18293.1| unknown [Glycine max]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 314/494 (63%), Positives = 367/494 (74%), Gaps = 42/494 (8%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
            E +DPAIRLFG+KI FP D                     ++ EEE AE+    ++  E
Sbjct: 2   HEIRDPAIRLFGQKIPFPED---------------------VDKEEESAEDREQEMEEHE 40

Query: 63  TTQQDDTTPPNI-------------DESKIP-ESPEANVNPKTPSIDDETAKSKAAKSEK 108
                DT   N+             +E+KI   SPEA VNPKTPSI++ETAKSK  KSEK
Sbjct: 41  DEGDKDTRVENVTKEELEADPPLDAEETKISGTSPEAIVNPKTPSIEEETAKSKGGKSEK 100

Query: 109 SQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGG 168
            Q DA+NS  QEKTLKKPDK+LPCPRC SMDTKFCYYNNYN+NQPR+FCKACQRYWTAGG
Sbjct: 101 EQGDAANS--QEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGG 158

Query: 169 TMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLD-- 226
           TMRNVPVGAGRRKNKN  S YRHITISEALQAARIDA NG   P++K NGRVLS GLD  
Sbjct: 159 TMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAQNGTHLPTLKGNGRVLSLGLDAH 218

Query: 227 APICDSMASVLNLAEKKVLNGTRNGF-HGFQEQEIPVPCRGGENGDDCSSGSSITVSNPM 285
           APICDSMAS++NL EKK LNGTRNGF HGF++Q +PVPC+ GENGDD S+ SSIT+S+P 
Sbjct: 219 APICDSMASLMNLGEKKALNGTRNGFHHGFEDQRLPVPCKSGENGDDSSTTSSITISSPK 278

Query: 286 EEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWN 345
            E  ++  Q+  +   +GF   +PC+PGVPW Y WN+ VPPPA CPSGFP+ FYPA FWN
Sbjct: 279 GENNKSTFQQQPLPQNHGFLPQVPCIPGVPWSYTWNSPVPPPALCPSGFPLPFYPATFWN 338

Query: 346 CGIPSTWNMPWISPQS-SPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRC 404
           CG+P  WN+PW S  S + N KSPSS PNSPTLGKHSRD+DMIK +++ KEE S  +N  
Sbjct: 339 CGMPGNWNVPWFSSSSPASNLKSPSSSPNSPTLGKHSRDSDMIKQDSLHKEEASTPRNGS 398

Query: 405 VLVPKTLRIDDPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRAN 464
           VLVPKTLRIDDP+EAAKSSIWATLGIKNES++GG +FK  QSK  EK+H+ E SP+L AN
Sbjct: 399 VLVPKTLRIDDPSEAAKSSIWATLGIKNESVSGGAMFKAFQSKKGEKNHV-EASPMLMAN 457

Query: 465 PAALSRSLNFHEST 478
           PAALSRSLNFHE++
Sbjct: 458 PAALSRSLNFHENS 471

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547377|ref|XP_002514746.1| zinc finger protein, putative [Ricinus communis] gi|223546350|gb|EEF47852.1| zinc finger protein, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 322/486 (66%), Positives = 370/486 (76%), Gaps = 15/486 (3%)

Query: 5   SKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAETT 64
           +KDPAIRLFGKKI   +D + PVI  +ELPS         E E +  +E S+        
Sbjct: 6   TKDPAIRLFGKKIPLTADLDPPVIPGQELPSLERVAVEEDEEEMKAEKELSAGKVTDTQE 65

Query: 65  QQDDTTPP--NIDESKIPES-PEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEK 121
           + D+   P  + +ES  PE   E +VNPKTPSI++E+AKSK +KSEK QND +N+  QEK
Sbjct: 66  EDDEDDTPIQDTEESAEPEKLGETDVNPKTPSINEESAKSKNSKSEKQQNDGTNT--QEK 123

Query: 122 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 181
           TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK
Sbjct: 124 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 183

Query: 182 NKNCASQYRHITISEALQAARIDAPNGI-SHPSVKSNGRVLSFGLDAPICDSMASVLNLA 240
           NKN AS YRHITISEALQAARI+APNG  ++P+++ NGRVLSFGLD PICDSMASVL+LA
Sbjct: 184 NKNSASHYRHITISEALQAARIEAPNGTCNNPALRPNGRVLSFGLDTPICDSMASVLSLA 243

Query: 241 EKKVLNGTRNGFHGFQEQEIPVPCRGGEN-GDDCSSGSSITVSNPMEEVGRNGMQEPLMR 299
           +KKVLN +RNGFH F+++   VPC+G EN GDDCS GSS+TVSN MEE  R G QEP M 
Sbjct: 244 DKKVLNSSRNGFHHFEDKMTRVPCKGRENGGDDCSGGSSVTVSNSMEEGRRTGAQEPFMP 303

Query: 300 SINGFPSPIPCLPGVPWPYPWNASV---PPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPW 356
           SINGF SPI CL GVPW YPWN+++   P     P GFPMSFYP   WNCG+   WN+P 
Sbjct: 304 SINGFASPITCLSGVPWAYPWNSALPPPPAFCPPPPGFPMSFYP-PIWNCGVAGGWNIPL 362

Query: 357 I--SPQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRID 414
           +     SS + +  SS PNSPTLGKHSRD D +K +++ KEE  K KN CVLVPKTLRID
Sbjct: 363 LSPQSSSSSSNQKASSSPNSPTLGKHSRDGDALKPDDLGKEEPGKRKNGCVLVPKTLRID 422

Query: 415 DPNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAET--SPVLRANPAALSRSL 472
           DPNEAAKSSIWATLGIKNES  GG L K LQ KSDEK+H+ +T  S VLRANPAALSRS+
Sbjct: 423 DPNEAAKSSIWATLGIKNESFNGGGLLKALQPKSDEKNHIPQTSSSSVLRANPAALSRSI 482

Query: 473 NFHEST 478
           NFHEST
Sbjct: 483 NFHEST 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452849|ref|XP_002283706.1| PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 301/511 (58%), Positives = 364/511 (71%), Gaps = 38/511 (7%)

Query: 4   ESKDPAIRLFGKKIAFP-----------------SDGEVPVIFSEELPSPAAKEECSIEA 46
           E+KDPAI+LFGK I  P                   G    +      + + +E+C    
Sbjct: 3   EAKDPAIKLFGKTIPLPEVATAAAGNDSPSGATVGGGGEDWVDQNRATNSSPEEDCVRAG 62

Query: 47  EE-EKAEEDSSAVKAAETTQQDDTTPPNIDESKIPESPEA-NVNPKTPSIDDETAKSKAA 104
           EE  + ++D+S  K  +T Q+D       +E   P++    N NPKTPS D ETA  K +
Sbjct: 63  EEGREVDKDTSGGKVTDTRQEDGARSSTSEEFTDPDANSGVNENPKTPSADKETATLKCS 122

Query: 105 KSEKSQNDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYW 164
           K+E+ Q++ S S  QEKTLKKPDKILPCPRCNSMDTKFCYYNNYN+NQPRHFCK CQRYW
Sbjct: 123 KNEEEQSETSIS--QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYW 180

Query: 165 TAGGTMRNVPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFG 224
           TAGGTMRNVPVGAGRRKNKN  S YRHIT+SEALQ+AR D PNGI HP++K+NG VL+FG
Sbjct: 181 TAGGTMRNVPVGAGRRKNKNSTSHYRHITVSEALQSARTDVPNGIHHPALKTNGTVLTFG 240

Query: 225 LDAPICDSMASVLNLAEKKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNP 284
            D P+C+SMASVLNLAEK + N T NGFH  ++  IPVP  GGENGDD  S SS+T SN 
Sbjct: 241 SDTPLCESMASVLNLAEKTMRNCTPNGFHKPEKLRIPVPYGGGENGDDHLSKSSVTASNS 300

Query: 285 MEEVGRNGMQEPLMRSINGFPSPIPCLPGVPWPYPWNAS-----------VPPPAFCPSG 333
            EE G+  + + +MR+ + FP  IPC PG PWPYPWN++           VPPPAFCPSG
Sbjct: 301 KEEAGKTALPDQVMRNCHAFPPQIPCFPGAPWPYPWNSAQWSPPVPAIPPVPPPAFCPSG 360

Query: 334 FPMSFYP-AAFWNCGIPSTWNMPWISPQSSPNQKSPSSGPNSPTLGKHSRDADMIKSENM 392
           FPM FYP AA+W C +P  WN+PW+   S+ N  +PSSGPNSPTLGKHSRD +M+K+ N 
Sbjct: 361 FPMPFYPAAAYWGCTVPGAWNIPWVPQPSALNHTAPSSGPNSPTLGKHSRDENMLKASNF 420

Query: 393 DKEELSKEKN--RCVLVPKTLRIDDPNEAAKSSIWATLGIKNES---LAGGRLFKGLQSK 447
            +EEL KE N  RC+ +PKTLRIDDP EAA+SSIWATLGIKN+    ++GGRLFK  QSK
Sbjct: 421 GEEELQKENNSERCLWIPKTLRIDDPGEAARSSIWATLGIKNDKADPISGGRLFKSFQSK 480

Query: 448 SDEKSHMAETSPVLRANPAALSRSLNFHEST 478
           +DEK+H+AETSPVL+ANPAALSRSLNFHES+
Sbjct: 481 ADEKNHIAETSPVLQANPAALSRSLNFHESS 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512105|ref|XP_003524761.1| PREDICTED: dof zinc finger protein DOF3.3-like [Glycine max]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 314/483 (65%), Positives = 364/483 (75%), Gaps = 18/483 (3%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
            E +DPAIRLFG+KI FP D  V V   E+      + E  +E  E++  +D+      E
Sbjct: 2   HEIRDPAIRLFGQKIPFPED--VVVDKEEKEIESGEEREQEMEKYEDQGHKDAGVENVTE 59

Query: 63  TTQQDDTTPPNIDESK-IPESPEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEK 121
              + D  PPN +E+K    SPEA VNPKTPSI++ET KSK  K+EK Q DA+NS  QEK
Sbjct: 60  EELEVDP-PPNAEETKNSGSSPEAIVNPKTPSIEEETEKSKGDKTEKEQGDAANS--QEK 116

Query: 122 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 181
           TLKKPDK+LPCPRC SMDTKFCYYNNYN+NQPR+FCKACQRYWTAGGTMRNVPVGAGRRK
Sbjct: 117 TLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRK 176

Query: 182 NKNCASQYRHITISEALQAARIDAPNGISH-PSVKSNGRVLSFGLD--APICDSMASVLN 238
           NKN  S YRHITISEALQAARID     SH P +K NGRVLSFGLD  APICDSMASV N
Sbjct: 177 NKNSTSHYRHITISEALQAARID-----SHLPPLKGNGRVLSFGLDAHAPICDSMASVNN 231

Query: 239 LAEKKVLNGTRNGF-HGFQEQEI-PVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEP 296
           L EKK LN TRNGF HGF++Q + PVPC+ GENGDD S+ SSITVS+   E  +N  Q+ 
Sbjct: 232 LGEKKPLNCTRNGFHHGFEDQRLPPVPCKSGENGDDSSTTSSITVSSSKGENNKNTFQQQ 291

Query: 297 LMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPW 356
            +   +GF   +PC+PGV WPY WN+ VPPPA CPSGFP+ FYPA FWNCG+P  WN+P 
Sbjct: 292 SVPQNHGFLPQLPCIPGVSWPYTWNSPVPPPAMCPSGFPLPFYPATFWNCGMPGNWNVPL 351

Query: 357 ISPQSSP-NQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDD 415
            S  SS  N +S SS PNSPTLGKHSRD DMIK  ++ KEE SK +N  VLVPKTLRIDD
Sbjct: 352 FSSHSSASNLESRSSSPNSPTLGKHSRDGDMIKQYSLPKEEASKPRNGGVLVPKTLRIDD 411

Query: 416 PNEAAKSSIWATLGIKNESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFH 475
           P+EAAKSSIWATLGIKNES++GG +FK  QSK +EK+H+ E SP+L ANPAALSRSLNFH
Sbjct: 412 PSEAAKSSIWATLGIKNESVSGGGMFKAFQSKKNEKNHV-EASPLLMANPAALSRSLNFH 470

Query: 476 EST 478
           E++
Sbjct: 471 ENS 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457399|ref|XP_002281994.1| PREDICTED: dof zinc finger protein DOF3.3-like [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 301/483 (62%), Positives = 360/483 (74%), Gaps = 18/483 (3%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
           QE KDPA +LFGK I   +DG+ PV   +   S AA      +  EE+ E+D+   K AE
Sbjct: 2   QEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAV--AREDGLEEETEKDALGGKPAE 59

Query: 63  TTQQDDTTPPNIDESKIPES-PEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEK 121
           T  +D +     +ES+  E+  E+N NPKTPSI +E    K +K+EK Q+D+ +S  QEK
Sbjct: 60  TKGEDGS-----EESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDS--QEK 112

Query: 122 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 181
           TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCK+CQRYWTAGGTMRNVPVGAGRRK
Sbjct: 113 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRK 172

Query: 182 NKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAE 241
           NKN AS YRHITISEALQ  RI+A NG+  P++KSNG VL+FG DAP CDSM SVLNL E
Sbjct: 173 NKNSASHYRHITISEALQTVRIEATNGVHQPTLKSNGTVLTFGSDAPFCDSMTSVLNLEE 232

Query: 242 KKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSI 301
           KK+ NG RNGFH  +EQ IPV  R  ENGDD SS SSITVSN  EE  + G+ E   R+ 
Sbjct: 233 KKMPNGARNGFHTHEEQGIPVSFRVQENGDDHSSASSITVSNSSEEGSKYGLHE-AKRNS 291

Query: 302 NGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWIS-PQ 360
           +G PS IPC+PG+PWPYPWN++V PP FCP GFPM FYPAA+WNC + + WN+PW+S P 
Sbjct: 292 HGVPSRIPCIPGIPWPYPWNSAV-PPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWLSPPS 350

Query: 361 SSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKN--RCVLVPKTLRIDDPNE 418
           SS NQK+P+S  NSPTLGKHSR+ D++K   ++ EE  K+++  RC+ VPKTLRIDDP E
Sbjct: 351 SSANQKTPNSRQNSPTLGKHSREGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAE 410

Query: 419 AAKSSIWATLGIKN---ESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFH 475
           AAKSSIW TLGIKN   +S++GG LF     K D+K+H  +TS VLRANPAALSRSLNF 
Sbjct: 411 AAKSSIWTTLGIKNDKVDSVSGGGLFNAFHLKGDDKNHAIDTSAVLRANPAALSRSLNFQ 470

Query: 476 EST 478
           ES+
Sbjct: 471 ESS 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866358|emb|CAN79859.1| hypothetical protein VITISV_035904 [Vitis vinifera]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 299/483 (61%), Positives = 359/483 (74%), Gaps = 18/483 (3%)

Query: 3   QESKDPAIRLFGKKIAFPSDGEVPVIFSEELPSPAAKEECSIEAEEEKAEEDSSAVKAAE 62
           QE KDPA +LFGK I   +DG+ PV   +   S AA      +  EE+ E+D+   K AE
Sbjct: 2   QEPKDPAFKLFGKTIPMLADGDAPVSSGDVGDSGAAV--AREDGLEEETEKDALGGKPAE 59

Query: 63  TTQQDDTTPPNIDESKIPES-PEANVNPKTPSIDDETAKSKAAKSEKSQNDASNSNSQEK 121
           T  +D +     +ES+  E+  E+N NPKTPSI +E    K +K+EK Q+D+ +S  QEK
Sbjct: 60  TKGEDGS-----EESRNSETVAESNENPKTPSIAEENVTLKTSKAEKGQSDSPDS--QEK 112

Query: 122 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 181
           TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCK+CQRYWTAGGTMRNVPVGAGRRK
Sbjct: 113 TLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGTMRNVPVGAGRRK 172

Query: 182 NKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVLNLAE 241
           NKN AS YRHITISEALQ  +I+A NG+  P++KSNG VL+FG DAP CDSM SVLNL E
Sbjct: 173 NKNSASHYRHITISEALQTVQIEATNGVHQPTLKSNGTVLTFGSDAPFCDSMTSVLNLEE 232

Query: 242 KKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPMEEVGRNGMQEPLMRSI 301
           KK+ NG RNGFH  +EQ IPV  R  ENGDD SS SSITVSN  EE  + G+ E   R+ 
Sbjct: 233 KKMPNGARNGFHTHKEQGIPVSFRVQENGDDHSSASSITVSNSSEEGSKYGLHE-AKRNS 291

Query: 302 NGFPSPIPCLPGVPWPYPWNASVPPPAFCPSGFPMSFYPAAFWNCGIPSTWNMPWIS-PQ 360
           +G PS IPC+PG+PWPYPWN++V PP FCP GFPM FYPAA+WNC + + WN+PW+S P 
Sbjct: 292 HGVPSRIPCIPGIPWPYPWNSAV-PPPFCPPGFPMPFYPAAYWNCHVTAPWNIPWLSPPS 350

Query: 361 SSPNQKSPSSGPNSPTLGKHSRDADMIKSENMDKEELSKEKN--RCVLVPKTLRIDDPNE 418
           SS NQK+P+S  NSPTLGKHSR+ D++K   ++ EE  K+++  RC+ VPKTLRIDDP E
Sbjct: 351 SSANQKTPNSRQNSPTLGKHSREGDILKPSIVEDEETPKQRSSERCLWVPKTLRIDDPAE 410

Query: 419 AAKSSIWATLGIKN---ESLAGGRLFKGLQSKSDEKSHMAETSPVLRANPAALSRSLNFH 475
           AAKSSIW TLGI N   +S++GG LF     K D+K+H  +TS VLRANPAALSRSLNF 
Sbjct: 411 AAKSSIWTTLGIXNDKVDSVSGGGLFNAFHLKGDDKNHAMDTSAVLRANPAALSRSLNFQ 470

Query: 476 EST 478
           ES+
Sbjct: 471 ESS 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	478
TAIR|locus:2079152	448	CDF3 "cycling DOF factor 3" [A	0.809	0.863	0.509	1.7e-103
TAIR|locus:2154079	298	CDF1 "AT5G62430" [Arabidopsis	0.182	0.291	0.755	1.8e-75
TAIR|locus:2007151	399	AT1G69570 [Arabidopsis thalian	0.207	0.248	0.544	6.3e-54
TAIR|locus:2164860	457	CDF2 "cycling DOF factor 2" [A	0.652	0.682	0.376	4.4e-45
TAIR|locus:2030006	175	AT1G29160 [Arabidopsis thalian	0.148	0.405	0.75	6.1e-31
TAIR|locus:2055506	170	AT2G34140 [Arabidopsis thalian	0.146	0.411	0.728	2e-30
TAIR|locus:2032153	325	AT1G28310 [Arabidopsis thalian	0.253	0.372	0.453	3.8e-27
TAIR|locus:2134981	342	AT4G24060 [Arabidopsis thalian	0.156	0.219	0.56	8.3e-26
TAIR|locus:2040746	330	DOF2.4 "DNA binding with one f	0.259	0.375	0.392	3.2e-24
TAIR|locus:2079492	324	DAG1 "dof affecting germinatio	0.158	0.234	0.539	3.2e-24

TAIR|locus:2079152 CDF3 "cycling DOF factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 1.7e-103, Sum P(2) = 1.7e-103
 Identities = 216/424 (50%), Positives = 261/424 (61%)

Query:    67 DDTTPPNIDESKIPESPEANVNPKTPSID-DETXXXXXXXXXXXQNDASNSNSQEKTLKK 125
             +  TP   D++    +  +  N K  ++D +E              D   +    KTLKK
Sbjct:    46 EKVTPELSDKNNNNCNDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKK 105

Query:   126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNC 185
             P KILPCPRC SM+TKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK+ 
Sbjct:   106 PTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSS 165

Query:   186 ASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAP---ICDSMASVLNLAE- 241
             +S YRHITISEAL+AAR+D       P +++N RVLSFGL+A    +   M  V+ L E 
Sbjct:   166 SSHYRHITISEALEAARLD-------PGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQED 218

Query:   242 KKVLNGTRNGFHGFQEQEIPVPCRGGENGDDCSSGSSITVSNPM---EEVGRNG--MQEP 296
             +KV NG RN FHG  +Q +       ENGDDCSSGSS+T SN     E   ++G  ++  
Sbjct:   219 QKVSNGARNRFHGLADQRLVARV---ENGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQ 275

Query:   297 LMRSINGFPSPIPCLPGVPWPYPWNASVPPPAFCPS-GFPMSFYPAAFWNCGIPSTWNMP 355
             +  + N   +   C+PGVPWPY WN ++PPP F P  G+PM FYP  +W   IP    +P
Sbjct:   276 MNNNNNNNMNGYACIPGVPWPYTWNPAMPPPGFYPPPGYPMPFYP--YWT--IPM---LP 328

Query:   356 WIXXXXXXXXXXXXXXXXXXTLGKHSRDADMIKSENMDKEELSKEKNRCVLVPKTLRIDD 415
                                 TLGKH RD    K +N   E   K+K  CVLVPKTLRIDD
Sbjct:   329 --PHQSSSPISQKCSNTNSPTLGKHPRDEGSSKKDN---ETERKQKAGCVLVPKTLRIDD 383

Query:   416 PNEAAKSSIWATLGIKNESL--AGGRLFKGLQSKSDEKSH-MAETSPVLRANPAALSRSL 472
             PNEAAKSSIW TLGIKNE++  AGG +FKG   K+   ++  AE SPVL ANPAALSRS 
Sbjct:   384 PNEAAKSSIWTTLGIKNEAMCKAGG-MFKGFDHKTKMYNNDKAENSPVLSANPAALSRSH 442

Query:   473 NFHE 476
             NFHE
Sbjct:   443 NFHE 446

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2154079 CDF1 "AT5G62430" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.8e-75, Sum P(4) = 1.8e-75
 Identities = 68/90 (75%), Positives = 77/90 (85%)

Query:   110 QNDASNSNSQ-EKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGG 168
             QN      S+ +KTLKKP KILPCPRCNSM+TKFCYYNNYN+NQPRHFCKACQRYWT+GG
Sbjct:    33 QNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGG 92

Query:   169 TMRNVPVGAGRRKNKNCA--SQYRHITISE 196
             TMR+VP+GAGRRKNKN +  S Y H+TISE
Sbjct:    93 TMRSVPIGAGRRKNKNNSPTSHYHHVTISE 122

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2007151 AT1G69570 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 6.3e-54, Sum P(4) = 6.3e-54
 Identities = 61/112 (54%), Positives = 76/112 (67%)

Query:   113 ASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRN 172
             ++ S  +   LKKPDK++PCPRC S +TKFCYYNNYN+NQPR+FC+ CQRYWTAGG+MRN
Sbjct:   115 STTSGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRN 174

Query:   173 VPVGAGRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFG 224
             VPVG+GRRKNK   S   +      LQ    D  N        ++G +LSFG
Sbjct:   175 VPVGSGRRKNKGWPSSNHY------LQVTSEDCDNN-------NSGTILSFG 213

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164860 CDF2 "cycling DOF factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 133/353 (37%), Positives = 171/353 (48%)

Query:     7 DPAIRLFGKKIAFPSDG---------------EVPVIFSEELPSPXXXXXXXXXXXXXXX 51
             DPAI+LFGK I  P  G               ++PV  S+                    
Sbjct:     3 DPAIKLFGKTIPLPELGVVDSSSSYTGFLTETQIPVRLSDSCTGDDDDEEMGDSGLGREE 62

Query:    52 XXXXXXXXXXXTTQQDDTTPPNIDESKIPESPEAN-VNPKTPSIDDETXXXXXXXXXXXQ 110
                         T + +       E  +    E+N V   T  I ++T           +
Sbjct:    63 GDDVGDGGGESETDKKEEKDSECQEESLRN--ESNDVTTTTSGITEKTETTKAAKTN--E 118

Query:   111 NDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTM 170
                  + SQE  LKKPDKILPCPRCNSM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTM
Sbjct:   119 ESGGTACSQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTM 178

Query:   171 RNVPVGAGRRKNKNCASQY-RHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPI 229
             RNVPVGAGRRKNK+ AS Y RH++I+ A +A +  A   + HP+      +L+FG D+ +
Sbjct:   179 RNVPVGAGRRKNKSPASHYNRHVSITSA-EAMQKVARTDLQHPN---GANLLTFGSDSVL 234

Query:   230 CDSMASVLNLAEKKVLNGTRNGFHGFQEQ-EIPVPC-RGGENGDDCSSGSSITV---SNP 284
             C+SMAS LNL EK +L  T+       E  +I VP  +  E     S    +       P
Sbjct:   235 CESMASGLNLVEKSLLK-TQTVLQEPNEGLKITVPLNQTNEEAGTVSPLPKVPCFPGPPP 293

Query:   285 MEEVGRNGMQEPLMRSINGFPSPI--PCLPGVPWPYPWNAS--VPPPAFCPSG 333
                   NG+   ++     +P P    C PGV  P  WN+   +P P   PSG
Sbjct:   294 TWPYAWNGVSWTILPF---YPPPAYWSC-PGVS-PGAWNSFTWMPQPN-SPSG 340

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2030006 AT1G29160 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query:   113 ASNSNSQEKTL-KKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMR 171
             A  S S + T  K+PDKI+PCPRC SM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +R
Sbjct:    44 AVRSPSSDLTAEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALR 103

Query:   172 NVPVGAGRRKNK 183
             NVPVGAGRRK+K
Sbjct:   104 NVPVGAGRRKSK 115

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2055506 AT2G34140 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
 Identities = 51/70 (72%), Positives = 60/70 (85%)

Query:   114 SNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNV 173
             S+S+S     K+PDKI+ CPRC SM+TKFCY+NNYN+NQPRHFCK C RYWTAGG +RNV
Sbjct:    42 SSSSSDLTAEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNV 101

Query:   174 PVGAGRRKNK 183
             PVGAGRRK+K
Sbjct:   102 PVGAGRRKSK 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032153 AT1G28310 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
 Identities = 59/130 (45%), Positives = 77/130 (59%)

Query:   113 ASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRN 172
             +S+   Q++  ++P   L CPRC+S +TKFCYYNNY+++QPRHFCKAC+RYWT GGT+RN
Sbjct:    24 SSHQQQQQQQPQQPQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRN 83

Query:   173 VPVGAGRRKNKNCAS-QYRHITISEALQAARIDAPNG---ISHPSVKSNGRVLSFGLDAP 228
             VPVG   RKNK          T +  +      +PN    ISH S   N   L +GL   
Sbjct:    84 VPVGGSYRKNKRVKRPSTATTTTASTVSTTNSSSPNNPHQISHFS-SMNHHPLFYGLS-- 140

Query:   229 ICDSMASVLN 238
               D M+S  N
Sbjct:   141 --DHMSSCNN 148

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2134981 AT4G24060 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 8.3e-26, Sum P(2) = 8.3e-26
 Identities = 42/75 (56%), Positives = 55/75 (73%)

Query:   119 QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAG 178
             + K   + D+ + CPRCNS +TKFCYYNNY++ QPR+FCK C+RYWT GG++RN+PVG G
Sbjct:    42 ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query:   179 RRKNKNCASQYRHIT 193
              RKNK   S    I+
Sbjct:   102 SRKNKRSHSSSSDIS 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2040746 DOF2.4 "DNA binding with one finger 2.4" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 53/135 (39%), Positives = 76/135 (56%)

Query:   118 SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGA 177
             +++  +  P+  L CPRC S +TKFCY+NNY++ QPRHFCK C+RYWT GG +RNVPVG 
Sbjct:    77 ARQANVALPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGG 136

Query:   178 GRRKNKNCASQYRHITISEALQAARIDAPNGISHPSVKSNGRVLSFGLDAPICDSMASVL 237
             G R+N+   S   +   S A         N  S  S   N   +S  L +    +  S+L
Sbjct:   137 GCRRNRRTKSNSNNNNNSTATS-------NNTSFSS--GNASTISTILSSHYGGNQESIL 187

Query:   238 N--LAEKKVLNGTRN 250
             +  L+  +++N T N
Sbjct:   188 SQILSPARLMNPTYN 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2079492 DAG1 "dof affecting germination 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 41/76 (53%), Positives = 57/76 (75%)

Query:   112 DASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMR 171
             + +N+ + E    +P + + CPRCNS +TKFCYYNNY++ QPR+FCK C+RYWT GG++R
Sbjct:    56 NTNNTATMETRKARPQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLR 115

Query:   172 NVPVGAGRRKNKNCAS 187
             NVPVG   RKNK  ++
Sbjct:   116 NVPVGGSSRKNKRSST 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009639 "response to red or far red light" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LFV3	CDF3_ARATH	No assigned EC number	0.4969	0.9016	0.9620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00170400 hypothetical protein (506 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	478
pfam02701	63	pfam02701, zf-Dof, Dof domain, zinc finger	2e-39

>gnl|CDD|111583 pfam02701, zf-Dof, Dof domain, zinc finger

 Score =  136 bits (344), Expect = 2e-39
 Identities = 48/59 (81%), Positives = 54/59 (91%)

Query: 125 KPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK 183
           KPDK L CPRC+SM+TKFCYYNNYN+NQPR+FCK C+RYWTAGG +RNVPVG GRRKNK
Sbjct: 1   KPDKALKCPRCDSMNTKFCYYNNYNLNQPRYFCKNCRRYWTAGGALRNVPVGGGRRKNK 59

The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	478
PF02701	63	zf-Dof: Dof domain, zinc finger; InterPro: IPR0038	100.0
TIGR02159	146	PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subu	88.99
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	87.05
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	86.76
COG3677	129	Transposase and inactivated derivatives [DNA repli	83.75

>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.2e-36  Score=241.70  Aligned_cols=63  Identities=71%  Similarity=1.460  Sum_probs=60.9

Q ss_pred             CCCCccCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhccCCcccccccCCCccCCCCCCC
Q 011752          125 KPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCAS  187 (478)
Q Consensus       125 ~p~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~GG~lRnvPvGgG~RK~k~s~S  187 (478)
                      +|++.++||||+|++|||||||||++.||||||++|+||||+||+|||||||||+||+|+++|
T Consensus         1 ~~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~rywT~GG~lRnVPvggg~Rk~k~~~s   63 (63)
T PF02701_consen    1 KPEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRYWTHGGTLRNVPVGGGCRKNKRSSS   63 (63)
T ss_pred             CCccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHHHHhcceecCCccCCCcccCCcCCC
Confidence            588999999999999999999999999999999999999999999999999999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent

>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit

Probab=88.99  E-value=0.19  Score=46.53  Aligned_cols=34  Identities=29%  Similarity=0.679  Sum_probs=27.6

Q ss_pred             ccCCCCCCCCCCceeeeccc--CCCCCcchhhhhhhhh
Q 011752          129 ILPCPRCNSMDTKFCYYNNY--NINQPRHFCKACQRYW  164 (478)
Q Consensus       129 ~~~CPRc~S~~tkfcyyNny--~~~qPR~fCk~C~Ryw  164 (478)
                      ...||||.|.+|+.  .+.|  +.++.-|+|++|+.=+
T Consensus       105 ~~~cp~c~s~~t~~--~s~fg~t~cka~~~c~~c~epf  140 (146)
T TIGR02159       105 SVQCPRCGSADTTI--TSIFGPTACKALYRCRACKEPF  140 (146)
T ss_pred             CCcCCCCCCCCcEe--ecCCCChhhHHHhhhhhhCCcH
Confidence            58999999999997  5666  4567889999998643

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=87.05  E-value=0.43  Score=35.80  Aligned_cols=31  Identities=39%  Similarity=0.808  Sum_probs=23.8

Q ss_pred             CCCCccCCCCCCCCCCceeeecccCCCCCcchhhhhhh
Q 011752          125 KPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQR  162 (478)
Q Consensus       125 ~p~~~~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~R  162 (478)
                      =|+. ..||+|.+.  ++..+.+    +.++.|++|++
T Consensus        15 W~~g-~~CP~Cg~~--~~~~~~~----~~~~~C~~C~~   45 (46)
T PF12760_consen   15 WPDG-FVCPHCGST--KHYRLKT----RGRYRCKACRK   45 (46)
T ss_pred             CCCC-CCCCCCCCe--eeEEeCC----CCeEECCCCCC
Confidence            3444 679999998  6655655    78999999985

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=86.76  E-value=0.35  Score=35.48  Aligned_cols=30  Identities=33%  Similarity=0.700  Sum_probs=21.4

Q ss_pred             cCCCCCCCCCCceeeecccCCC-CCcchhhhhh
Q 011752          130 LPCPRCNSMDTKFCYYNNYNIN-QPRHFCKACQ  161 (478)
Q Consensus       130 ~~CPRc~S~~tkfcyyNny~~~-qPR~fCk~C~  161 (478)
                      +.||||.+.+.=  |=|-.+.. ..||+|++|+
T Consensus         6 v~CP~C~s~~~v--~k~G~~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGV--KKNGKSPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcc--eeCCCCCCCCEeEecCcCC
Confidence            689999998721  23444433 5899999996

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=83.75  E-value=0.64  Score=42.19  Aligned_cols=35  Identities=29%  Similarity=0.632  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCCceeeecccCCCCCcchhhhhhhhhcc
Q 011752          130 LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTA  166 (478)
Q Consensus       130 ~~CPRc~S~~tkfcyyNny~~~qPR~fCk~C~RywT~  166 (478)
                      ..||+|.+.+  +-=++-+.....|+.|++|++=|+.
T Consensus        31 ~~cP~C~s~~--~~k~g~~~~~~qRyrC~~C~~tf~~   65 (129)
T COG3677          31 VNCPRCKSSN--VVKIGGIRRGHQRYKCKSCGSTFTV   65 (129)
T ss_pred             CcCCCCCccc--eeeECCccccccccccCCcCcceee
Confidence            4899999999  2235555666999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	478
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	90.27

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.27  E-value=0.14  Score=39.69  Aligned_cols=51  Identities=20%  Similarity=0.450  Sum_probs=37.0

Q ss_pred             CccccccCCCCCccCCCCCCCCCCceeeecccCCCCCc---chhhhhhhhhccCCc
Q 011752          117 NSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPR---HFCKACQRYWTAGGT  169 (478)
Q Consensus       117 ~sq~k~l~~p~~~~~CPRc~S~~tkfcyyNny~~~qPR---~fCk~C~RywT~GG~  169 (478)
                      .+++.+|++-  -..||+|...+.-|-+.+-....-|-   |.|.+|.-.|+.-++
T Consensus        13 ~~~DPtlp~t--~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~~   66 (72)
T d1twfi2          13 IGSDPTLPRS--DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK   66 (72)
T ss_dssp             GGGCTTSCCC--CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred             cccCCCCCcc--CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccccc
Confidence            4556677654  46999999887777666555444333   899999999998654