Citrus Sinensis ID: 011758

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MVAKGRQNSTDSPRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHVHLLLNLVPI
ccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccccccccccccccccEEEEcccccHHHHHHHHHHHcccEcccccHHHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mvakgrqnstdspraevgeidtsapfqsVKDAVTLfgegafsgekpsirkpkphsaERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQieesncsnpsgsdgarnqdleTEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENakasdldsvRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHVHLLLNLVPI
mvakgrqnstdspraevgeidtsapfqsVKDAVTLFGEGafsgekpsirkpkphSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELekakrtvedlshklkvvieskesaiKVTEAAKIQAKqieesncsnpsgsdgarnqDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLEnakasdldsVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKehselkekeaetesiaGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEeaeeakgaetraLDRLRRCLRELVLHVHLLLNLVPI
MVAKGRQNSTDSPRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTafnlaaaaensakanMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPqltqnletqltetMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIaleeaekklraaleeaeeakgaetraldrlrrclrelvlhvhlllnlvPI
***********************************************************************************************************LKVVI**************************************************************IHQDCNSTLEAKVTAFNLA************************************************************************************************************************************************************************NLHVLLQKTKSELEACVVE**************************************************************************LDRLRRCLRELVLHVHLLLNLV**
************************PFQSVKDA******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLLNLVPI
****************VGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQA****************************YTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAE**********************SIGQVK***********KVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELD***************LRNLVESLKVELEN***************ESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLS**************NKAMELKEEAGATKIALEEAEKKLRAA***********TRALDRLRRCLRELVLHVHLLLNLVPI
**************AEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHVHLLLNLVPI
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MVAKGRQNSTDSPRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLxxxxxxxxxxxxxxxxxxxxxISTVQESIGQVKLATMQAQQEQAKVFAEKDLQxxxxxxxxxxxxxxxxxxxxxFDPQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLDSVRIVTSELDDAKGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLRELVLHVHLLLNLVPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q9LVQ4 649 WEB family protein At5g55 yes no 0.914 0.673 0.569 1e-125
Q9FWW5548 WEB family protein At1g12 no no 0.907 0.791 0.432 4e-76
O23564527 Putative WEB family prote no no 0.832 0.755 0.300 4e-35
O48724 807 Protein WEAK CHLOROPLAST no no 0.912 0.540 0.261 5e-16
Q9SZB6 779 Protein WEAK CHLOROPLAST no no 0.914 0.560 0.251 5e-11
Q9LK53316 WEB family protein At3g13 no no 0.171 0.259 0.448 2e-10
Q9C9N6 607 Protein PLASTID MOVEMENT no no 0.771 0.607 0.244 1e-09
Q9FMN1 751 Protein WEAK CHLOROPLAST no no 0.870 0.553 0.247 0.0001
Q9C638 752 Protein WEAK CHLOROPLAST no no 0.324 0.206 0.288 0.0002
>sp|Q9LVQ4|Y5586_ARATH WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1 Back     alignment and function desciption
 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/444 (56%), Positives = 331/444 (74%), Gaps = 7/444 (1%)

Query: 1   MVAK-GRQNSTDS-PRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAER 58
           MVAK GR++S+DS P  EVGEIDTSAPFQSVKDAV LFGE AFS EKP  RKP P SAE+
Sbjct: 1   MVAKKGRRDSSDSSPIVEVGEIDTSAPFQSVKDAVNLFGEAAFSAEKPVFRKPNPQSAEK 60

Query: 59  VLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESA 118
           VL K+T+LHLAQ+ELNKLK+QLKNAE  + QA  ELE +KRTV++L+ KL+ V ES++SA
Sbjct: 61  VLVKQTELHLAQKELNKLKEQLKNAETIREQALSELEWSKRTVDELTRKLEAVNESRDSA 120

Query: 119 IKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQD 178
            K TEAAK   ++ +  N S  S SD A+ +D+E    +Y  V  EL  AKQELRKI Q 
Sbjct: 121 NKATEAAKSLIEEAKPGNVSVASSSD-AQTRDME----EYGEVCKELDTAKQELRKIRQV 175

Query: 179 CNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKV 238
            N  LE K  A +    A+  +K + E++  L KEI+ V ES+ Q KLA  QA++EQ+++
Sbjct: 176 SNEILETKTVALSKVEEAKKVSKVHSEKIELLRKEIAAVNESVEQTKLACSQARKEQSEI 235

Query: 239 FAEKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKA 298
           FAEK++Q++SYKA +EESAKK LAL+N+FDP+  + LE QLTET +EI  LQKQ+E AKA
Sbjct: 236 FAEKEIQQKSYKAGMEESAKKSLALKNEFDPEFAKKLEVQLTETYNEIDELQKQMETAKA 295

Query: 299 SDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETES 358
           SD+DSV  V+ EL++AKG  +K+ EEE SL+ LVESLK EL+NVK EH E++ KEAE ES
Sbjct: 296 SDIDSVNGVSLELNEAKGLFEKLVEEEKSLQELVESLKAELKNVKMEHDEVEAKEAEIES 355

Query: 359 IAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAME 418
           +AG+LH+ L ++KSELE CV EE+K + A E+M+ +++Q+S ETE AR+EAE M+NKA E
Sbjct: 356 VAGDLHLKLSRSKSELEQCVTEESKAKAALEDMMLTINQISSETEAARREAEGMRNKAKE 415

Query: 419 LKEEAGATKIALEEAEKKLRAALE 442
           L +EA +  +ALE++E  LR AL+
Sbjct: 416 LMKEAESAHLALEDSELHLRVALD 439

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FWW5|Y1215_ARATH WEB family protein At1g12150 OS=Arabidopsis thaliana GN=At1g12150 PE=2 SV=1 Back     alignment and function description
>sp|O23564|Y4721_ARATH Putative WEB family protein At4g17210 OS=Arabidopsis thaliana GN=At4g17210 PE=3 SV=1 Back     alignment and function description
>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 OS=Arabidopsis thaliana GN=WEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK53|Y3319_ARATH WEB family protein At3g13190 OS=Arabidopsis thaliana GN=At3g13190 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9N6|PMI2_ARATH Protein PLASTID MOVEMENT IMPAIRED 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3 OS=Arabidopsis thaliana GN=WEL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9C638|WEL2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2 OS=Arabidopsis thaliana GN=WEL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
255563560 652 Paramyosin, putative [Ricinus communis] 0.960 0.703 0.775 1e-179
225461957 650 PREDICTED: protein WEAK CHLOROPLAST MOVE 0.956 0.703 0.749 1e-179
147822315 650 hypothetical protein VITISV_000013 [Viti 0.912 0.670 0.748 1e-177
224056479 652 predicted protein [Populus trichocarpa] 0.960 0.703 0.751 1e-173
356566413 653 PREDICTED: protein PLASTID MOVEMENT IMPA 0.916 0.670 0.668 1e-156
356527161 653 PREDICTED: protein PLASTID MOVEMENT IMPA 0.916 0.670 0.654 1e-149
449461045 654 PREDICTED: WEB family protein At5g55860- 0.916 0.669 0.667 1e-146
357460213 679 hypothetical protein MTR_3g060660 [Medic 0.907 0.639 0.611 1e-135
356499452 657 PREDICTED: LOW QUALITY PROTEIN: protein 0.960 0.698 0.593 1e-129
297793061 650 hypothetical protein ARALYDRAFT_495668 [ 0.916 0.673 0.583 1e-125
>gi|255563560|ref|XP_002522782.1| Paramyosin, putative [Ricinus communis] gi|223538020|gb|EEF39633.1| Paramyosin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 356/459 (77%), Positives = 406/459 (88%)

Query: 1   MVAKGRQNSTDSPRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVL 60
           M AK RQN+TDSP+ EVGEIDTSAPFQSVKDAVTLFGEGAFSGEKP+I+K +PHSAERVL
Sbjct: 1   MGAKERQNATDSPKVEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPAIKKTRPHSAERVL 60

Query: 61  AKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIK 120
           AKETQLHLAQ+EL+KLKDQ+KNAE TK QA VELEKAKRTVEDLS KL+ V E K++AI+
Sbjct: 61  AKETQLHLAQKELSKLKDQVKNAETTKGQALVELEKAKRTVEDLSAKLRTVTELKDTAIR 120

Query: 121 VTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCN 180
            TEAAK QAKQIEE+   + SGS GAR QDLE+ RE+Y +VF+EL AAKQEL KI QDC 
Sbjct: 121 ATEAAKSQAKQIEETKSGDASGSSGARKQDLESAREQYITVFTELDAAKQELWKIRQDCE 180

Query: 181 STLEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFA 240
           ++LEAK+ AFN AA AE++AKAN+E+VSELSKEIS +QESIGQVKLA++QAQQEQAK+FA
Sbjct: 181 ASLEAKLAAFNQAAEAEHAAKANVEKVSELSKEISALQESIGQVKLASLQAQQEQAKIFA 240

Query: 241 EKDLQRQSYKATLEESAKKLLALRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASD 300
           EK +Q+QSYKATLE SA KLLAL+N+FDP+L  NLE QL ET++EI ALQKQ+ENAKASD
Sbjct: 241 EKGVQKQSYKATLEASANKLLALKNEFDPELVFNLEKQLAETITEIDALQKQMENAKASD 300

Query: 301 LDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETESIA 360
           LDSVR VTSELD AK SLQKVAEEESSLR+LVESLK+ELENVKKEHSEL+EKEAETES A
Sbjct: 301 LDSVRTVTSELDGAKESLQKVAEEESSLRSLVESLKLELENVKKEHSELREKEAETESAA 360

Query: 361 GNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELK 420
           GNLHV L+K+K+ELEA   EE+K RGASEEMIS+LHQLS E ENA+QEAEEMKNKA ELK
Sbjct: 361 GNLHVKLRKSKAELEAAAAEESKTRGASEEMISTLHQLSSEAENAQQEAEEMKNKAEELK 420

Query: 421 EEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLR 459
            EA AT+IALEEAEKKLR ALEEAEEAK AETRALD+++
Sbjct: 421 SEAEATRIALEEAEKKLRVALEEAEEAKLAETRALDQIK 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461957|ref|XP_002266660.1| PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147822315|emb|CAN64061.1| hypothetical protein VITISV_000013 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056479|ref|XP_002298876.1| predicted protein [Populus trichocarpa] gi|222846134|gb|EEE83681.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356566413|ref|XP_003551426.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356527161|ref|XP_003532181.1| PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449461045|ref|XP_004148254.1| PREDICTED: WEB family protein At5g55860-like [Cucumis sativus] gi|449523145|ref|XP_004168585.1| PREDICTED: WEB family protein At5g55860-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357460213|ref|XP_003600388.1| hypothetical protein MTR_3g060660 [Medicago truncatula] gi|355489436|gb|AES70639.1| hypothetical protein MTR_3g060660 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499452|ref|XP_003518554.1| PREDICTED: LOW QUALITY PROTEIN: protein PLASTID MOVEMENT IMPAIRED 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297793061|ref|XP_002864415.1| hypothetical protein ARALYDRAFT_495668 [Arabidopsis lyrata subsp. lyrata] gi|297310250|gb|EFH40674.1| hypothetical protein ARALYDRAFT_495668 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2176625 649 AT5G55860 "AT5G55860" [Arabido 0.874 0.644 0.552 3.8e-110
TAIR|locus:2201961548 AT1G12150 "AT1G12150" [Arabido 0.851 0.742 0.407 9.9e-71
TAIR|locus:2130729527 AT4G17210 "AT4G17210" [Arabido 0.815 0.740 0.249 9.2e-28
TAIR|locus:2825751 752 AT1G45545 "AT1G45545" [Arabido 0.832 0.529 0.234 6.9e-20
TAIR|locus:2160046 751 AT5G42880 "AT5G42880" [Arabido 0.857 0.545 0.238 4.8e-19
TAIR|locus:2010826 1345 AT1G65010 [Arabidopsis thalian 0.774 0.275 0.225 2.9e-17
TAIR|locus:2075402 806 AT3G02930 "AT3G02930" [Arabido 0.778 0.461 0.238 5.6e-15
TAIR|locus:2066301 807 WEB1 "WEAK CHLOROPLAST MOVEMEN 0.861 0.510 0.235 7.1e-15
TAIR|locus:504955294 1221 AT4G27595 "AT4G27595" [Arabido 0.748 0.293 0.214 1e-14
TAIR|locus:2045412 1333 AT2G32240 "AT2G32240" [Arabido 0.740 0.265 0.237 4.2e-13
TAIR|locus:2176625 AT5G55860 "AT5G55860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 235/425 (55%), Positives = 302/425 (71%)

Query:     1 MVAK-GRQNSTDS-PRAEVGEIDTSAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAER 58
             MVAK GR++S+DS P  EVGEIDTSAPFQSVKDAV LFGE AFS EKP  RKP P SAE+
Sbjct:     1 MVAKKGRRDSSDSSPIVEVGEIDTSAPFQSVKDAVNLFGEAAFSAEKPVFRKPNPQSAEK 60

Query:    59 VLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESA 118
             VL K+T+LHLAQ+ELNKLK+QLKNAE  + QA  ELE +KRTV++L+ KL+ V ES++SA
Sbjct:    61 VLVKQTELHLAQKELNKLKEQLKNAETIREQALSELEWSKRTVDELTRKLEAVNESRDSA 120

Query:   119 IKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQD 178
              K TEAAK   ++ +  N S  S SD A+ +D+E    +Y  V  EL  AKQELRKI Q 
Sbjct:   121 NKATEAAKSLIEEAKPGNVSVASSSD-AQTRDME----EYGEVCKELDTAKQELRKIRQV 175

Query:   179 CNSTLEAKVTXXXXXXXXXXXXXXXMERVSELSKEISTVQESIGQVKLATMQAQQEQAKV 238
              N  LE K                  E++  L KEI+ V ES+ Q KLA  QA++EQ+++
Sbjct:   176 SNEILETKTVALSKVEEAKKVSKVHSEKIELLRKEIAAVNESVEQTKLACSQARKEQSEI 235

Query:   239 FAEKDLQRQSYKATLEESAKKLLALRNQFDPXXXXXXXXXXXXXMSEIAALQKQLENAKA 298
             FAEK++Q++SYKA +EESAKK LAL+N+FDP              +EI  LQKQ+E AKA
Sbjct:   236 FAEKEIQQKSYKAGMEESAKKSLALKNEFDPEFAKKLEVQLTETYNEIDELQKQMETAKA 295

Query:   299 SDLDSVRIVTSELDDAKGSLQKVAEEESSLRNLVESLKVELENVKKEHSELKEKEAETES 358
             SD+DSV  V+ EL++AKG  +K+ EEE SL+ LVESLK EL+NVK EH E++ KEAE ES
Sbjct:   296 SDIDSVNGVSLELNEAKGLFEKLVEEEKSLQELVESLKAELKNVKMEHDEVEAKEAEIES 355

Query:   359 IAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQEAEEMKNKAME 418
             +AG+LH+ L ++KSELE CV EE+K + A E+M+ +++Q+S ETE AR+EAE M+NKA E
Sbjct:   356 VAGDLHLKLSRSKSELEQCVTEESKAKAALEDMMLTINQISSETEAARREAEGMRNKAKE 415

Query:   419 LKEEA 423
             L +EA
Sbjct:   416 LMKEA 420
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2201961 AT1G12150 "AT1G12150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130729 AT4G17210 "AT4G17210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825751 AT1G45545 "AT1G45545" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160046 AT5G42880 "AT5G42880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010826 AT1G65010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075402 AT3G02930 "AT3G02930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVQ4Y5586_ARATHNo assigned EC number0.56980.91420.6733yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
pfam05701484 pfam05701, DUF827, Plant protein of unknown functi 1e-69
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-07
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 5e-07
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
PRK00409 782 PRK00409, PRK00409, recombination and DNA strand e 1e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 9e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
TIGR03346 852 TIGR03346, chaperone_ClpB, ATP-dependent chaperone 0.002
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.004
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827) Back     alignment and domain information 
 Score =  229 bits (584), Expect = 1e-69
 Identities = 184/437 (42%), Positives = 261/437 (59%), Gaps = 34/437 (7%)

Query: 23  SAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKN 82
           SAPF+SVK+AV+LFG  A        +   P  +ERVL KET+L LAQ E NKLK +L+ 
Sbjct: 1   SAPFESVKEAVSLFGGIADW------KAHLPQRSERVLVKETELMLAQEEANKLKKELEV 54

Query: 83  AEDTKAQAFVELEKAKRTVEDLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSG 142
           AE  K Q   ELE  KRTVEDL  KL+   + ++ A + +E AK++A+++E+        
Sbjct: 55  AEKEKLQVLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELAKLRAEELEQGIQ----- 109

Query: 143 SDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKA 202
                    E E E+Y +  +EL + K+ELRKI Q+ ++ +E +  A   A  A  ++K 
Sbjct: 110 ---------ELEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICASKV 160

Query: 203 NMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLA 262
           N ++V EL+KEI  ++ES+ +   A ++A++E+     EKD  R++Y+  L+E+ K+L  
Sbjct: 161 NEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELER 220

Query: 263 LRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVA 322
           L+   DP+       +L E  +E+ +LQK++     S + SV  V  EL++AK +L+K A
Sbjct: 221 LKQDLDPEKDLE---KLAEASAELESLQKEI-----SIMASVASVLKELEEAKANLEKAA 272

Query: 323 EEESSLRNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEA 382
           EEE SLRNLVESLK ELE  KKE  EL+EKE E E  A +L   L +TKSE      +E+
Sbjct: 273 EEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSE------KES 326

Query: 383 KIRGASEEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALE 442
           K R    E+   L Q S E E AR+EAE  + +  +LKEEA  TK ALE AE +L AAL+
Sbjct: 327 KAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAALK 386

Query: 443 EAEEAKGAETRALDRLR 459
           EAE AK AE  AL  ++
Sbjct: 387 EAEAAKAAEALALAEIK 403

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
PF05701522 WEMBL: Weak chloroplast movement under blue light; 100.0
PF05701522 WEMBL: Weak chloroplast movement under blue light; 99.41
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 99.14
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 99.0
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.95
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.93
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 98.93
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.86
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.86
PRK02224 880 chromosome segregation protein; Provisional 98.76
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.71
PRK02224 880 chromosome segregation protein; Provisional 98.65
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 98.63
KOG0996 1293 consensus Structural maintenance of chromosome pro 98.39
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.38
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.34
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.25
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.21
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.16
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.1
KOG0996 1293 consensus Structural maintenance of chromosome pro 98.09
KOG0964 1200 consensus Structural maintenance of chromosome pro 98.05
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 98.03
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.89
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 97.85
PRK03918 880 chromosome segregation protein; Provisional 97.82
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.79
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.79
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.73
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.72
PF00038312 Filament: Intermediate filament protein; InterPro: 97.64
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 97.61
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.57
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.54
PF00038312 Filament: Intermediate filament protein; InterPro: 97.32
PHA02562562 46 endonuclease subunit; Provisional 97.25
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.2
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 97.1
PRK04778569 septation ring formation regulator EzrA; Provision 96.94
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.92
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 96.9
PRK04778 569 septation ring formation regulator EzrA; Provision 96.88
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.88
PRK01156 895 chromosome segregation protein; Provisional 96.87
PRK11637428 AmiB activator; Provisional 96.82
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.75
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 96.62
PHA02562 562 46 endonuclease subunit; Provisional 96.42
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.42
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 96.35
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 96.25
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.18
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.87
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.72
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 95.62
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.52
KOG4673 961 consensus Transcription factor TMF, TATA element m 95.45
PRK01156 895 chromosome segregation protein; Provisional 95.33
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.33
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.3
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.14
KOG1003205 consensus Actin filament-coating protein tropomyos 94.98
COG4942 420 Membrane-bound metallopeptidase [Cell division and 94.92
COG4372499 Uncharacterized protein conserved in bacteria with 94.86
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 94.68
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 94.54
KOG0979 1072 consensus Structural maintenance of chromosome pro 94.48
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 94.29
KOG0963629 consensus Transcription factor/CCAAT displacement 94.29
PRK09039 343 hypothetical protein; Validated 94.22
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 94.0
PRK04863 1486 mukB cell division protein MukB; Provisional 93.91
KOG4673 961 consensus Transcription factor TMF, TATA element m 93.88
KOG0018 1141 consensus Structural maintenance of chromosome pro 93.84
PRK04863 1486 mukB cell division protein MukB; Provisional 93.83
KOG1003205 consensus Actin filament-coating protein tropomyos 93.65
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 93.38
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.25
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 92.86
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 92.79
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 92.71
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.64
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 92.29
PRK09039343 hypothetical protein; Validated 91.85
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 91.58
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 91.06
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 90.79
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 90.78
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.73
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 90.64
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 90.5
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.64
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 89.29
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 89.01
KOG4809654 consensus Rab6 GTPase-interacting protein involved 88.6
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 88.39
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 88.24
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 87.42
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 87.24
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 86.72
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 86.0
PF13851201 GAS: Growth-arrest specific micro-tubule binding 85.97
COG4942420 Membrane-bound metallopeptidase [Cell division and 85.76
PF05010207 TACC: Transforming acidic coiled-coil-containing p 85.31
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 85.17
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 84.93
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 84.85
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 84.76
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 84.49
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 84.29
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 84.13
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 83.1
PF04111 314 APG6: Autophagy protein Apg6; InterPro: IPR007243 82.78
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 82.71
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 82.57
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 82.52
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 82.23
PF05911769 DUF869: Plant protein of unknown function (DUF869) 82.02
KOG4360 596 consensus Uncharacterized coiled coil protein [Fun 82.01
KOG0972384 consensus Huntingtin interacting protein 1 (Hip1) 81.62
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 81.28
PRK15178434 Vi polysaccharide export inner membrane protein Ve 80.37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.6e-70  Score=590.64  Aligned_cols=434  Identities=43%  Similarity=0.549  Sum_probs=417.0

Q ss_pred             CCCchhhHHHHhhhcCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758           23 SAPFQSVKDAVTLFGEGAFSGEKPSIRKPKPHSAERVLAKETQLHLAQRELNKLKDQLKNAEDTKAQAFVELEKAKRTVE  102 (478)
Q Consensus        23 ~~p~~SVk~Avs~Fg~~~~~~~~~~~~r~~~~~~e~~~~~e~ql~~~qeel~k~k~ql~~aE~~k~~a~~EL~~ak~~~e  102 (478)
                      +|||+|||+|||+|||+++  |+|.      ++++++..++.+|+++|+++++|++++..+|.+|.+|++||+.||++|+
T Consensus         1 ~apf~SVk~Avs~FG~~~~--~k~~------~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~ve   72 (522)
T PF05701_consen    1 SAPFESVKEAVSLFGGSID--WKKH------QSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVE   72 (522)
T ss_pred             CCCChHHHHHHHHcCCccc--cccC------CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999998865  3443      2338999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011758          103 DLSHKLKVVIESKESAIKVTEAAKIQAKQIEESNCSNPSGSDGARNQDLETEREKYTSVFSELAAAKQELRKIHQDCNST  182 (478)
Q Consensus       103 eL~~kLe~a~~e~~~a~e~~e~~k~r~~Ele~~~~~~~~~~~~a~k~eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~~~  182 (478)
                      +|+++|+.++.++.+|+++++++++|+++|++|+++.+   ++.|+.+|++++.||+.++++|+++++||.+++++|+++
T Consensus        73 el~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~---~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~  149 (522)
T PF05701_consen   73 ELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA---SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASA  149 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988854   456999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758          183 LEAKVTAFNLAAAAENSAKANMERVSELSKEISTVQESIGQVKLATMQAQQEQAKVFAEKDLQRQSYKATLEESAKKLLA  262 (478)
Q Consensus       183 ~e~k~~A~~~aeea~~~~~~~~~~ve~L~~El~~~Ke~l~~~~~a~~~Aee~~~~~~~~~~~~~~~~~~~lee~~~~l~~  262 (478)
                      +++|+.|+++|++|.++++.+.++|++|+.||.++|+++++++++|++|++++.++..+++.++..|+..|++++.++..
T Consensus       150 ~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~  229 (522)
T PF05701_consen  150 LDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEE  229 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH--------------HHHHHHHHHHHHHhHHHHHHHHHHH
Q 011758          263 LRNQFDPQLTQNLETQLTETMSEIAALQKQLENAKASDLDS--------------VRIVTSELDDAKGSLQKVAEEESSL  328 (478)
Q Consensus       263 L~~e~~~el~k~LE~kL~~~~~ei~~Lq~el~~~~~~~~~~--------------v~~~~~ELee~k~~L~~a~~E~~~l  328 (478)
                      |+.++.  ..++|+++|..++.+|..|+.+|..++.+.+..              +.+++.||++++.+|+++++|+++|
T Consensus       230 L~~e~~--~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L  307 (522)
T PF05701_consen  230 LKEELE--AAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSL  307 (522)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999995  999999999999999999999999988765544              8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhHHHHHHHhHHHHHHhHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHH
Q 011758          329 RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGASEEMISSLHQLSLETENARQE  408 (478)
Q Consensus       329 ~~~v~sLr~ELe~~k~el~~l~~~e~~a~~~v~~L~~EL~k~k~ELe~~~~~Eeka~~~~~~L~~~Lqq~s~Eae~Ak~~  408 (478)
                      +..+++|+++|+++|.++..++++++.+++.|++|+.+|++++++|+.++..+.+++..+.+|+..|+++++|++.|+..
T Consensus       308 ~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~e  387 (522)
T PF05701_consen  308 RASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKE  387 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011758          409 AEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAKGAETRALDRLRRCLRELVLHV  469 (478)
Q Consensus       409 a~~~~~el~~~keE~E~akaei~~~E~rL~a~~kE~eaakasE~~Al~~l~~l~e~~~~~~  469 (478)
                      +..++.++.+++.+++++++.+.+++.||+++++|+++||++|++|++.|++|+++.++..
T Consensus       388 a~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~  448 (522)
T PF05701_consen  388 AEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSR  448 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            9999999999999999999999999999999999999999999999999999999886654

Several sequences in this family are described as being myosin heavy chain-like.
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms] Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-06
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-05
2xs1_A704 Programmed cell death 6-interacting protein; prote 5e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 8e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 56/324 (17%), Positives = 133/324 (41%), Gaps = 17/324 (5%)

Query: 155  REKYTSVFSELAAAKQELRKIHQDCNSTLEAKVTAFNLAAAAENSAKANMERVSELSKEI 214
             E+          A+ EL+++ Q      E K        A         E    L+ + 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 215  STVQESIGQVKLATMQAQQEQAKVFAEK-DLQRQSYKAT-----LEESAKKLLALRNQFD 268
              ++E + +++    + ++   ++ AEK  +Q+Q           E + +KL   +   D
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 269  PQLTQNLETQLTETMSEIAALQKQLENAKASDLDSVRIVTSELDDAKGSLQKVAEEESSL 328
             ++ + +E  +     +   L K+ +  +      V  +T+ L + +   + + + ++  
Sbjct: 983  GKI-KKMEDDILIMEDQNNKLTKERKLLEER----VSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 329  RNLVESLKVELENVKKEHSELKEKEAETESIAGNLHVLLQKTKSELEACVVEEAKIRGAS 388
             +++  L+V L+  +K   EL++ + + E  + +LH  + + ++++     + AK     
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097

Query: 389  EEMISSLHQLSLETENARQEAEEMKNKAMELKEEAGATKIALEEAEKKLRAALEEAEEAK 448
            +  ++ L   + +  NA ++  E+++   +L+E+  + K A  +AEK+ R   EE E  K
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

Query: 449  ------GAETRALDRLRRCLRELV 466
                     T     LR    +  
Sbjct: 1158 TELEDTLDTTATQQELRGSDYKDD 1181
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 99.06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.92
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.36
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 97.23
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 97.15
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.9
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.02
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 94.96
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.79
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.78
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 93.5
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.26
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 90.91
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.35
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 88.27
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 88.02
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 87.87
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 86.87
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 85.61
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 84.98
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 84.39
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 84.36
3i00_A120 HIP-I, huntingtin-interacting protein 1; transcrip 84.14
3tnu_A131 Keratin, type I cytoskeletal 14; coiled-coil, stru 83.16
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 82.88
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 80.84
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 80.47
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=99.06  E-value=1.2e-05  Score=76.25  Aligned_cols=31  Identities=3%  Similarity=0.105  Sum_probs=13.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011758          150 DLETEREKYTSVFSELAAAKQELRKIHQDCN  180 (478)
Q Consensus       150 eLe~~~~q~~~~~~eL~s~k~EL~kl~~el~  180 (478)
                      .+.+.+..+......|..+..++..++..+.
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~   37 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAAEDRSK   37 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444444443
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Back     alignment and structure
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00