Citrus Sinensis ID: 011776

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------
MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELISGSKKDSLLSRIPSSGNTSSSSVGLIFSQTGSVPLSDLQLSGQSSVPLSSSRSARQGVEVRRLS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccEEEEcc
melygrnntsrngsqsghqpqwsptdqatgleesmwqsdlkvnesypqrhgvpdcvfymrtgvcgygdrcrynhprnRAAVEAAVRAtgdypdrpgepicqfylktgtckfgasckfhhpkhsggsmshvplniygyplrpgekECSYYLktgqckfgitckfhhpqpagtslpasapqfyppvqsptvpmaeqyggastslrvarppllassyvqgaygpvlfspgvvpfsgwnpysasvspvlspgaqpavgatsLYGVtqisssmpalaglypslpssagpsssgqmeqsfperpgepecqyflktgdckfgsscrfhhprdrvvprtncalsplglplrpgaqpctfylqngrckfgatckfdhpmgamryspsasslietpvapypvgsllstlapassssdlrpelisgskkdsllsripssgntssssvglifsqtgsvplsdlqlsgqssvplsssrsarqgvevrrls
melygrnntsrngsqsghqpqwSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRatgdypdrpGEPICQFYLKTGTCKFGASCKFHHPkhsggsmshvPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRfhhprdrvvprTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELISgskkdsllsripssgntssssvGLIFSQTGSVPLSDLQLSgqssvplsssrsarqgvevrrls
MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNraaveaavraTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAglypslpssagpsssgQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGsllstlapassssdlRPELISGSKKDSLLsripssgntssssVGLIFSQTGSVPLSDlqlsgqssvplsssrsarqGVEVRRLS
***********************************************QRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHH*************************************RVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVL******AVGATSLYGVTQI**************************************CQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMR*******************************************************************************************************
****************************************************PDCVFYMRTGVCGYGDRCRYNHPRNRA**************RPGEPICQFYLKTGTCKFGASCKFHHPKHSG******************EKECSYYLKTGQCKFGITCKFHHP*********************************TSLR************************************SVSPVLSPGAQPAVG***************************************FPERPGEPECQYFLKTGDCKFGSSCRFHHP********************PGAQPCTFYLQNGRCKFGATCKFDH*************************************************************************************************************
****************************TGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSL********************GEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLA**********ELISGSKKDSLLS*************GLIFSQTGSVPLSD***************************
**********************************************P*RHGVPDCVFYMRTGVCGYGDRCRYNHPRN************DYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHP**********************************SLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVT***SS*****************************RPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMG**********************************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELISGSKKDSLLSRIPSSGNTSSSSVGLIFSQTGSVPLSDLQLSGQSSVPLSSSRSARQGVEVRRLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query477 2.2.26 [Sep-21-2011]
Q84W91468 Zinc finger CCCH domain-c yes no 0.968 0.987 0.704 0.0
Q5NAW2476 Zinc finger CCCH domain-c yes no 0.882 0.884 0.485 1e-116
Q6NPN3465 Zinc finger CCCH domain-c no no 0.874 0.896 0.509 1e-115
Q5NAV3466 Zinc finger CCCH domain-c no no 0.790 0.809 0.516 1e-109
Q9SQU4462 Zinc finger CCCH domain-c no no 0.794 0.820 0.514 1e-104
Q2R4J4444 Zinc finger CCCH domain-c no no 0.786 0.844 0.473 6e-97
Q2QT65454 Zinc finger CCCH domain-c no no 0.729 0.766 0.498 2e-94
Q9SWF9417 Zinc finger CCCH domain-c N/A no 0.790 0.904 0.466 2e-92
Q8GXX7397 Zinc finger CCCH domain-c no no 0.742 0.891 0.438 3e-86
Q5JLB5439 Zinc finger CCCH domain-c no no 0.758 0.824 0.446 5e-86
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2 Back     alignment and function desciption
 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/477 (70%), Positives = 390/477 (81%), Gaps = 15/477 (3%)

Query: 3   LYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTG 62
           +Y RN    NGSQS   P W+P D  TGL+ESMW+  L  ++SYP+R G PDC +YMRTG
Sbjct: 1   MYARN-PPLNGSQSAQAPDWTPADADTGLQESMWRLGLG-SDSYPERPGAPDCAYYMRTG 58

Query: 63  VCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122
           VCGYG+RCRYNHPR+RA+VEA VRATG YP+R GEP CQFYLKTGTCKFGASCKFHHPK+
Sbjct: 59  VCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118

Query: 123 SGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSL---PASAPQ 179
           +GGSMSHVPLNIYGYP+R G+ ECSYYLKTGQCKFGITCKFHHPQPAGT++   PASAPQ
Sbjct: 119 AGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQ 178

Query: 180 FYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSA 239
           FYP VQS    M +QYGG S+SLRVAR  LL  SY+QGAYGP+L +PGVVP  GW+PYSA
Sbjct: 179 FYPSVQS---LMPDQYGGPSSSLRVAR-TLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSA 234

Query: 240 SVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPSSSGQMEQSFPERPG 299
            VSP LSPGAQ AVGATSLYGVTQ++S+ P+L G+YPSL S   P+   Q EQ+FPERPG
Sbjct: 235 PVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSS---PTGVIQKEQAFPERPG 291

Query: 300 EPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCK 359
           EPECQY+LKTGDCKFG+SC+FHHPRDRV PR NC LSP+GLPLRPG Q CTFY+QNG CK
Sbjct: 292 EPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCK 351

Query: 360 FGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELISGSKKD 419
           FG+TCKFDHPMG +RY+PSASSL + PVAPYPV SLL  LA A SSS    ELI+G  KD
Sbjct: 352 FGSTCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSST--ELIAGGAKD 409

Query: 420 SLLSRIPSSGNTSSSSVGLIFSQT-GSVPLSDLQLSGQSSVPLSSSRSARQGVEVRR 475
           + ++ +P+S +TS+ S GLIFSQ+ GS+P S+LQLS QSS+PL+ SR  RQG E+RR
Sbjct: 410 AYMTGVPTSRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIRR 466

Arabidopsis thaliana (taxid: 3702)
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2 Back     alignment and function description
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1 Back     alignment and function description
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2 Back     alignment and function description
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2 Back     alignment and function description
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1 Back     alignment and function description
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
255559296478 nucleic acid binding protein, putative [ 0.987 0.985 0.783 0.0
225436765475 PREDICTED: zinc finger CCCH domain-conta 0.991 0.995 0.757 0.0
356500268471 PREDICTED: zinc finger CCCH domain-conta 0.987 1.0 0.744 0.0
30690809468 zinc finger CCCH domain-containing prote 0.968 0.987 0.704 1e-179
356535424494 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.939 0.906 0.736 1e-179
297824887471 zinc finger (CCCH-type) family protein [ 0.968 0.980 0.697 1e-176
356536737473 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.985 0.993 0.687 1e-174
3738297553 unknown protein [Arabidopsis thaliana] 0.972 0.839 0.672 1e-173
145331437442 zinc finger CCCH domain-containing prote 0.914 0.986 0.654 1e-159
147818474 1388 hypothetical protein VITISV_002050 [Viti 0.792 0.272 0.738 1e-152
>gi|255559296|ref|XP_002520668.1| nucleic acid binding protein, putative [Ricinus communis] gi|223540053|gb|EEF41630.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/484 (78%), Positives = 416/484 (85%), Gaps = 13/484 (2%)

Query: 1   MELYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVN---ESYPQRHGVPDCVF 57
           M+LYGR+  +RNG QSG QP+WS     TGLEESMW+  L  +   ESYP+R GVPDCV+
Sbjct: 1   MDLYGRSQ-ARNGLQSGQQPEWSSGGAETGLEESMWRLGLNNSGGGESYPERPGVPDCVY 59

Query: 58  YMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKF 117
           YMRTG CGYG+RCRYNHPRNRAAVEAAVRATG+YP+R GEP C+FYLKTGTCKFGASCKF
Sbjct: 60  YMRTGFCGYGNRCRYNHPRNRAAVEAAVRATGEYPERIGEPSCEFYLKTGTCKFGASCKF 119

Query: 118 HHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASA 177
           HHPKH GGS+SHVPLN +GYPLRPGE ECSYYLKTGQCKFGITCKFHHPQPAG+SLP SA
Sbjct: 120 HHPKHGGGSLSHVPLNTHGYPLRPGENECSYYLKTGQCKFGITCKFHHPQPAGSSLPESA 179

Query: 178 PQFYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPY 237
           PQFY PVQSP++P+ +QYGGAS SLRV RPPLL  SYVQGAYGPVLFSPGVVP  GW+PY
Sbjct: 180 PQFYQPVQSPSIPIPDQYGGASASLRV-RPPLLPGSYVQGAYGPVLFSPGVVPIPGWSPY 238

Query: 238 SASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLPSSAGPS----SSGQMEQS 293
           SA VSPVLSP AQPAVGATSLYGVTQ+SSS PALAG YPS  S+A  +    S  Q EQ+
Sbjct: 239 SAPVSPVLSPSAQPAVGATSLYGVTQLSSSTPALAGPYPSPSSAAAAAAAPLSGTQKEQT 298

Query: 294 FPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYL 353
           FPERPGEPECQY+L+TGDCKFGSSCR+HHPRDRVVPRTNC LSPLGLPLRPGAQ CTFYL
Sbjct: 299 FPERPGEPECQYYLRTGDCKFGSSCRYHHPRDRVVPRTNCVLSPLGLPLRPGAQHCTFYL 358

Query: 354 QNGRCKFGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGSLLSTLAPASSSSDLRPELI 413
           +NG CKFG+TCKFDHPM  MRYSPSASSLI+ PVAPYPVGSLL+TLAP+SSSS    ELI
Sbjct: 359 RNGHCKFGSTCKFDHPMETMRYSPSASSLIDMPVAPYPVGSLLATLAPSSSSS----ELI 414

Query: 414 SGSKKDSLLSRIPSSGNTSSSSVGLIFSQTGSVPLSDLQLSGQSSVPLSSSRSARQGVEV 473
            G+K D  LSRIPSSGNTSSS VGL+FSQTGSVPLS+LQL  Q+ VPL+SSRS RQG EV
Sbjct: 415 GGTKIDPYLSRIPSSGNTSSSGVGLMFSQTGSVPLSELQLPSQNPVPLTSSRSTRQGAEV 474

Query: 474 RRLS 477
           RR S
Sbjct: 475 RRSS 478

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436765|ref|XP_002267320.1| PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1 [Vitis vinifera] gi|296086618|emb|CBI32253.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500268|ref|XP_003518955.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|30690809|ref|NP_182306.2| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] gi|145331439|ref|NP_001078078.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] gi|62901446|sp|Q84W91.2|C3H32_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 32; Short=AtC3H32; AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 1 gi|134031914|gb|ABO45694.1| At2g47850 [Arabidopsis thaliana] gi|330255803|gb|AEC10897.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] gi|330255805|gb|AEC10899.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356535424|ref|XP_003536245.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|297824887|ref|XP_002880326.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297326165|gb|EFH56585.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356536737|ref|XP_003536892.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|3738297|gb|AAC63639.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145331437|ref|NP_001078077.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] gi|330255804|gb|AEC10898.1| zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147818474|emb|CAN74119.1| hypothetical protein VITISV_002050 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query477
TAIR|locus:2043368468 AT2G47850 [Arabidopsis thalian 0.968 0.987 0.616 4e-161
TAIR|locus:2182988465 AT5G18550 [Arabidopsis thalian 0.788 0.808 0.509 4.1e-113
TAIR|locus:2081066462 AT3G06410 [Arabidopsis thalian 0.832 0.859 0.474 7.8e-110
TAIR|locus:2171407375 ZFN3 "zinc finger nuclease 3" 0.402 0.512 0.475 1.5e-81
TAIR|locus:2075477397 ZFN1 "zinc finger protein 1" [ 0.706 0.848 0.433 1.3e-77
TAIR|locus:2101170448 AT3G48440 [Arabidopsis thalian 0.677 0.720 0.367 1.1e-53
TAIR|locus:2087775524 HUA1 "ENHANCER OF AG-4 1" [Ara 0.702 0.639 0.343 9.2e-52
TAIR|locus:2010562404 AT1G04990 [Arabidopsis thalian 0.614 0.725 0.355 1e-45
TAIR|locus:100623071882 AT1G48195 [Arabidopsis thalian 0.163 0.951 0.512 1e-20
ASPGD|ASPL0000062209254 AN0298 [Emericella nidulans (t 0.142 0.267 0.328 1.1e-07
TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
 Identities = 294/477 (61%), Positives = 338/477 (70%)

Query:     3 LYGRNNTSRNGSQSGHQPQWSPTDQATGLEESMWQSDLKVNESYPQRHGVPDCVFYMRTG 62
             +Y RN    NGSQS   P W+P D  TGL+ESMW+  L  ++SYP+R G PDC +YMRTG
Sbjct:     1 MYARN-PPLNGSQSAQAPDWTPADADTGLQESMWRLGLG-SDSYPERPGAPDCAYYMRTG 58

Query:    63 VCGYGDRCRYNHPRNXXXXXXXXXXTGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKH 122
             VCGYG+RCRYNHPR+          TG YP+R GEP CQFYLKTGTCKFGASCKFHHPK+
Sbjct:    59 VCGYGNRCRYNHPRDRASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118

Query:   123 SGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP---ASAPQ 179
             +GGSMSHVPLNIYGYP+R G+ ECSYYLKTGQCKFGITCKFHHPQPAGT++P   ASAPQ
Sbjct:   119 AGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQ 178

Query:   180 FYPPVQSPTVPMAEQYGGASTSLRVARPPLLASSYVQGAYGPVLFSPGVVPFSGWNPYSA 239
             FYP VQS    M +QYGG S+SLRVAR  LL  SY+QGAYGP+L +PGVVP  GW+PYSA
Sbjct:   179 FYPSVQSL---MPDQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPYSA 234

Query:   240 SVSPVLSPGAQPAVGATSLYGVTQISSSMPALAXXXXXXXXXXXXXXXXQMEQSFPERPG 299
              VSP LSPGAQ AVGATSLYGVTQ++S+ P+L                 Q EQ+FPERPG
Sbjct:   235 PVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVI---QKEQAFPERPG 291

Query:   300 EPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCK 359
             EPECQY+LKTGDCKFG+SC+FHHPRDRV PR NC LSP+GLPLRPG Q CTFY+QNG CK
Sbjct:   292 EPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCK 351

Query:   360 FGATCKFDHPMGAMRYSPSASSLIETPVAPYPVGXXXXXXXXXXXXXXXRPELISGSKKD 419
             FG+TCKFDHPMG +RY+PSASSL + PVAPYPV                  ELI+G  KD
Sbjct:   352 FGSTCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSST--ELIAGGAKD 409

Query:   420 SLLXXXXXXXXXXXXXVGLIFSQTG-SVPLSDXXXXXXXXXXXXXXXXXXXGVEVRR 475
             + +              GLIFSQ+G S+P S+                   G E+RR
Sbjct:   410 AYMTGVPTSRSTSNISAGLIFSQSGGSIPFSELQLSSQSSLPLTGSRITRQGREIRR 466
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062209 AN0298 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NAW2C3H6_ORYSJNo assigned EC number0.48550.88250.8844yesno
Q84W91C3H32_ARATHNo assigned EC number0.70440.96850.9871yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 1e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 3e-08
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 3e-07
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 2e-06
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 7e-06
smart0035627 smart00356, ZnF_C3H1, zinc finger 2e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 3e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 6e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 8e-04
smart0035627 smart00356, ZnF_C3H1, zinc finger 0.002
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information 
 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 95  PGEPICQFYLKTGTCKFGASCKFHHPK 121
               +C+F+ +TGTCK+G  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 477
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.92
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 99.5
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 99.39
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.31
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 99.18
KOG1040325 consensus Polyadenylation factor I complex, subuni 99.1
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 98.89
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.7
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 98.69
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.66
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 98.47
KOG2333 614 consensus Uncharacterized conserved protein [Gener 98.42
KOG4791 667 consensus Uncharacterized conserved protein [Funct 98.35
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 98.31
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.22
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 98.19
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 97.96
KOG1763343 consensus Uncharacterized conserved protein, conta 97.58
smart0035627 ZnF_C3H1 zinc finger. 97.57
KOG4791 667 consensus Uncharacterized conserved protein [Funct 97.56
smart0035627 ZnF_C3H1 zinc finger. 97.51
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 97.35
KOG1763343 consensus Uncharacterized conserved protein, conta 97.29
KOG2333 614 consensus Uncharacterized conserved protein [Gener 97.24
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.85
KOG2185486 consensus Predicted RNA-processing protein, contai 96.68
COG5252299 Uncharacterized conserved protein, contains CCCH-t 96.29
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 96.13
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.71
KOG1595 528 consensus CCCH-type Zn-finger protein [General fun 95.61
KOG2185486 consensus Predicted RNA-processing protein, contai 95.54
COG5152259 Uncharacterized conserved protein, contains RING a 94.36
KOG3702681 consensus Nuclear polyadenylated RNA binding prote 94.19
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 93.63
COG5152259 Uncharacterized conserved protein, contains RING a 93.08
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 89.28
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 89.04
KOG2202260 consensus U2 snRNP splicing factor, small subunit, 88.76
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 88.27
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 87.69
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 86.57
PF1065023 zf-C3H1: Putative zinc-finger domain; InterPro: IP 84.19
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=99.92  E-value=1.7e-24  Score=219.93  Aligned_cols=253  Identities=38%  Similarity=0.749  Sum_probs=166.2

Q ss_pred             CCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCchhhhHHH-hhcCCCCCCCCCCccchhccccCCCCC-CCCCCCCCC
Q 011776           43 NESYPQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAA-VRATGDYPDRPGEPICQFYLKTGTCKF-GASCKFHHP  120 (477)
Q Consensus        43 ~~~yp~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~-~r~~~~~Per~k~~~Cr~FlktG~Ck~-G~~CkF~H~  120 (477)
                      ...|++++...+|.+|.+++.|.++..|+|+|+..+...... .......|++.++++|++|.++|.|+| |++|+|+|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~  156 (332)
T KOG1677|consen   77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG  156 (332)
T ss_pred             cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence            456999988899999999999999999999999733222111 134567888999999999999999999 999999999


Q ss_pred             CCCCCCCcccCCcccCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 011776          121 KHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLPASAPQFYPPVQSPTVPMAEQYGGAST  200 (477)
Q Consensus       121 ~~~~~~~~~~~ln~~g~P~R~~~~~C~~y~ktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~~p~~qs~s~ps~~~ygg~~~  200 (477)
                      ..+.+...  .++..+.+.+.++++|.+|.++|.|+||.+|+|.|+....+.+....   + ....  .+..+.|+    
T Consensus       157 ~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~~~---~-~~~~--~~~~~~~~----  224 (332)
T KOG1677|consen  157 LEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNRHP---Y-PVSR--NPQPQSYG----  224 (332)
T ss_pred             cccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccccccccCC---c-cccc--cccccccc----
Confidence            98654222  45567778889999999999999999999999999988543322111   0 1111  22233443    


Q ss_pred             ceeecCCCCCcCC-cccCCCCccccCCCCcCCCCCCCCccCCCCCCCCCCCCCCCcccccccccCCCCCCcccCCCCCCC
Q 011776          201 SLRVARPPLLASS-YVQGAYGPVLFSPGVVPFSGWNPYSASVSPVLSPGAQPAVGATSLYGVTQISSSMPALAGLYPSLP  279 (477)
Q Consensus       201 ~~~~~r~~~~pg~-~~qg~y~p~~~~~g~~p~~gw~pY~~~~~p~~~~~~~~~~~~~~~y~~~~~~~~~~~~~g~~~~~~  279 (477)
                       ....|..++... .++-+|.+..++.+++|...             ......+         .+....      +..  
T Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~~~~~---------~~~~~~------~~~--  273 (332)
T KOG1677|consen  225 -LTASRSSLLNQQSKLQQPFAPSGLSESVLPRSS-------------QQNLLPQ---------GLRSSS------SSH--  273 (332)
T ss_pred             -hhhcchhhccccccccccccccccccccCcCCc-------------ccccccc---------cccccc------ccc--
Confidence             112222222211 22222322223344444100             0000000         000000      000  


Q ss_pred             CCCCCCCCCCcccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCC
Q 011776          280 SSAGPSSSGQMEQSFPERPGEPECQYFLKTGDCKFGSSCRFHHPRDRVVPRTNCALSPLGLPLRPGAQPCTFYLQNGRCK  359 (477)
Q Consensus       280 ~~~~p~~~~~~~~~~Perp~~~~C~~y~ktG~C~~G~~Crf~Hp~~~~~~~~~~~l~~~glP~rpg~~~C~~y~~~G~Ck  359 (477)
                        ..-.....+++.+++++.+++|.+ +++|             .++        |    +|+|++...|.+|+++|.|+
T Consensus       274 --~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-------------~~~--------l----~~~~~~~~~~~~~~~~~~~~  325 (332)
T KOG1677|consen  274 --PSGSQENVNENGFRARPEQPECRS-MKSG-------------ENR--------L----LPLRPGPGACTLFSRYGSCK  325 (332)
T ss_pred             --cccchhccccccCcCCCCCCccch-hccc-------------ccc--------c----cCCCCCcccccccccccccC
Confidence              000113346678999999999999 9998             121        1    79999999999999999999


Q ss_pred             CCCCCcC
Q 011776          360 FGATCKF  366 (477)
Q Consensus       360 fG~~CkF  366 (477)
                      ||..|+|
T Consensus       326 ~~~~~~~  332 (332)
T KOG1677|consen  326 FGPLCKF  332 (332)
T ss_pred             CCCcCCC
Confidence            9999997

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query477
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 5e-16
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 4e-15
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 3e-14
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 3e-05
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 7e-04
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 3e-08
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 3e-08
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 1e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 4e-07
2rhk_C72 Cleavage and polyadenylation specificity factor su 5e-07
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-06
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-05
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 3e-05
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 5e-05
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 4e-04
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 71.9 bits (176), Expect = 5e-16
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 99  ICQFYLKTGTCKFGASCKFHHPKHSGGSMSHVPLNIYGYPLRPGEKECSYYLKTGQCKFG 158
           +C+ Y ++G C++GA C+F H        +  P        +   + C  +   G+C +G
Sbjct: 14  LCRTYSESGRCRYGAKCQFAHGLGELRQANRHP--------KYKTELCHKFKLQGRCPYG 65

Query: 159 ITCKFHHPQ 167
             C F H  
Sbjct: 66  SRCHFIHNP 74
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.44
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.41
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.38
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 99.31
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.25
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.23
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.2
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.18
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 99.09
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 99.03
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.95
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.94
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.9
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.85
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.74
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.72
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 98.66
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 97.5
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 97.42
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 96.14
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.76
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 96.47
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 95.71
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 95.56
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 92.18
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 91.97
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.44  E-value=6.6e-14  Score=114.13  Aligned_cols=67  Identities=30%  Similarity=0.689  Sum_probs=56.5

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCchhhhHHHhhcCCCCCCCCCCccchhccccCCCCCCCCCCCCCCCCCCCCCcc
Q 011776           50 HGVPDCVFYMRTGVCGYGDRCRYNHPRNRAAVEAAVRATGDYPDRPGEPICQFYLKTGTCKFGASCKFHHPKHSGGSMSH  129 (477)
Q Consensus        50 p~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~~~~~~r~~~~~Per~k~~~Cr~FlktG~Ck~G~~CkF~H~~~~~~~~~~  129 (477)
                      .+.++|+||++ |.|++|++|+|+|+....                ++++|+||+++|.|. |++|+|.|.....     
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~-----   64 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMPECYFYSKFGECS-NKECPFLHIDPES-----   64 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-----
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC----------------cCCCCcccCCCCccC-CCCeeccCCCccc-----
Confidence            35789999999 999999999999987641                356899999889999 9999999987632     


Q ss_pred             cCCcccCCCCCCCCcccccccc
Q 011776          130 VPLNIYGYPLRPGEKECSYYLK  151 (477)
Q Consensus       130 ~~ln~~g~P~R~~~~~C~~y~k  151 (477)
                                  ..++|.+|++
T Consensus        65 ------------~~~~C~~f~~   74 (77)
T 2d9n_A           65 ------------KIKDCPWSGP   74 (77)
T ss_dssp             ------------SCSSSSCCTT
T ss_pred             ------------cCCCCccccc
Confidence                        2468999987
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 477
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 8e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.001
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.001
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 0.002
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.001
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.001
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.002
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 0.003
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 0.003
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 0.003
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 99  ICQFYLKTGTCKFGASCKFHHPKH 122
           +C+ + ++GTCK+G  C+F H  H
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHGFH 31
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query477
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.13
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 98.05
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.03
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 98.0
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 97.97
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 97.97
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.68
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.24
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.47
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 95.29
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 86.7
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 85.52
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.6e-07  Score=62.39  Aligned_cols=34  Identities=26%  Similarity=0.628  Sum_probs=29.3

Q ss_pred             CCCCCCcCcccccccCCCCCCCCCCCCCCCchhh
Q 011776           47 PQRHGVPDCVFYMRTGVCGYGDRCRYNHPRNRAA   80 (477)
Q Consensus        47 p~Rp~~~~C~yF~rtG~C~~G~~CkF~H~~~~~~   80 (477)
                      +.+.++.+|++|.++|.|.+|++|.|+|..+++.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            3455778999999999999999999999988753
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure