Citrus Sinensis ID: 011779
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| Q9R9N2 | 351 | Lipopolysaccharide core b | yes | no | 0.457 | 0.621 | 0.239 | 2e-09 | |
| D2Q1C4 | 424 | D-inositol 3-phosphate gl | yes | no | 0.366 | 0.412 | 0.282 | 4e-07 | |
| P46915 | 377 | Spore coat protein SA OS= | yes | no | 0.394 | 0.498 | 0.272 | 1e-06 | |
| P39862 | 380 | Capsular polysaccharide b | yes | no | 0.373 | 0.468 | 0.259 | 6e-06 | |
| Q8FSH1 | 424 | D-inositol 3-phosphate gl | yes | no | 0.400 | 0.450 | 0.266 | 8e-05 | |
| C7R101 | 424 | D-inositol 3-phosphate gl | yes | no | 0.301 | 0.339 | 0.275 | 0.0001 | |
| C3PK12 | 421 | D-inositol 3-phosphate gl | yes | no | 0.417 | 0.472 | 0.252 | 0.0001 | |
| A1R8N8 | 408 | D-inositol 3-phosphate gl | no | no | 0.461 | 0.539 | 0.244 | 0.0002 | |
| Q8X0H8 | 471 | Alpha-1,3/1,6-mannosyltra | N/A | no | 0.199 | 0.201 | 0.352 | 0.0002 | |
| O34413 | 407 | Putative glycosyltransfer | no | no | 0.408 | 0.479 | 0.264 | 0.0003 |
| >sp|Q9R9N2|LPSB_RHIME Lipopolysaccharide core biosynthesis mannosyltransferase LpsB OS=Rhizobium meliloti (strain 1021) GN=lpsB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 28/246 (11%)
Query: 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286
+ +P+T ++H ++K + AK+ +LG+ V KG D
Sbjct: 132 LDVPNTVILHGIDTKRFQPPFDKTEAKK--------ALGLDPAKKFVGCFGRVRHQKGTD 183
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
LF+ S L P A++ G FESEL+ V + + DR+ FV +
Sbjct: 184 LFVDSMIALLPC-------RPDWGAIVAGRATGPHLAFESELKERVAKAGLADRILFVGE 236
Query: 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN 406
+ + A+D+ V Q W E FG +EAMA +PV+ T G +E+V
Sbjct: 237 HTNIPDWYRALDLFVA-PQRW-EGFGLTPLEAMATGVPVV-------ATDVGAFSELVTG 287
Query: 407 GT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464
G+ TGL+ + + + + R G R + F A IA V
Sbjct: 288 GSEETGLI--IAADDLKAMVDAAAAFMDDRPRLAAASANGLARTSKNFAIEQEARAIAAV 345
Query: 465 LKEVLK 470
+ +++
Sbjct: 346 YESLMR 351
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Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2EC: .EC: 4EC: .EC: -EC: .EC: - |
| >sp|D2Q1C4|MSHA_KRIFD D-inositol 3-phosphate glycosyltransferase OS=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 16/191 (8%)
Query: 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320
R ++GVR + ++ A + + K DL + + LE ++ +L V AVI G N
Sbjct: 223 RRAVGVREDAIVLAFVGRIQPLKAPDLLIRAAARMLE--RQPELRDRLVVAVIGGPSGNG 280
Query: 321 QTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378
E+ + + D FV +A + A V+ S + E FG + +EA
Sbjct: 281 MEHPEAHA-ELARRLGVDDVTRFVKPMPRPGLADWYRAASVVCVPS--YSESFGLVALEA 337
Query: 379 MAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438
A PV+ A GG T V +G TGLL P G+ A + +AT R
Sbjct: 338 QACGTPVV-------AAAVGGLTTAVTDGVTGLLVP--GHGVDDFADALAAIATDPGTRE 388
Query: 439 TMGKRGYERVK 449
TMGK E +
Sbjct: 389 TMGKAAVEHAQ 399
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) (taxid: 479435) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|P46915|COTSA_BACSU Spore coat protein SA OS=Bacillus subtilis (strain 168) GN=cotSA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 94/220 (42%), Gaps = 32/220 (14%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE +R LG+ + ++ + +S+ KG + L + + +E E P V V IGS
Sbjct: 179 REEMRSELGLHGKKIVL-FVGRLSKVKGPHILLQALPDIIE-------EHPDVMMVFIGS 230
Query: 317 DMNAQTKFESELRNYV--------MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368
++EL NYV MQK + FV K + DV V +SQ W
Sbjct: 231 KWFG----DNELNNYVKHLHTLGAMQKDHVTFIQFV-KPKDIPRLYTMSDVFVCSSQ-WQ 284
Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTG-LLHPVGKEGITPLAKNI 427
E R+ EAMA LP++ + GG E++ G G ++H E A+ I
Sbjct: 285 EPLARVHYEAMAAGLPIIT-------SNRGGNPEVIEEGKNGYIIHDF--ENPKQYAERI 335
Query: 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467
L + E+R +GK + F +AE + V ++
Sbjct: 336 NDLLSSSEKRERLGKYSRREAESNFGWQRVAENLLSVYEK 375
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Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
| >sp|P39862|CAPM_STAAU Capsular polysaccharide biosynthesis glycosyltransferase CapM OS=Staphylococcus aureus GN=capM PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 34/212 (16%)
Query: 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327
N++ + + + + KG +H +S ++I K +V ++IGS + ES+
Sbjct: 195 NDNFVIGYVGRIVKDKG----IHELIQSFKIIVSKGY---NVKLLVIGSLETENSIDESD 247
Query: 328 L------RNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381
N V+ K + D + F N ++V V + G FG ++IEA A
Sbjct: 248 YLFLTQNPNVVLIKHVSDPISFYNN----------MNVFVFPTHREG--FGNVSIEAQAL 295
Query: 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441
++PV+ T G + VVNG TG + V K +A+ I KL R T+G
Sbjct: 296 EVPVIT-------TNVTGAIDTVVNGETGFI--VEKGDFKAIAEKIEKLINDESLRETIG 346
Query: 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473
G +RV+ F + E + + LK+S+
Sbjct: 347 HNGRKRVENKFSSQIIWEELESMYNTFLKESE 378
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Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
| >sp|Q8FSH1|MSHA_COREF D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 88/221 (39%), Gaps = 30/221 (13%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
VV G L D +R RE LGV + A + + KG + +H+
Sbjct: 192 VVSPGADIALYTPGNDRATERSRRE-----LGVPLHAKVVAFVGRLQPFKGPQVLIHAVA 246
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT---V 350
E LE ++ L V +I G E+ RN ++ + R+ F++ V
Sbjct: 247 ELLERDPQRNLRV-----LICGGPSGPSATPET-YRNLAVELGVDKRIRFLDPRPPEELV 300
Query: 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTG 410
A Y AA D++ S + E FG + +EA A PV+ + GG V G TG
Sbjct: 301 AVYRAA-DIIAVPS--YNESFGLVAMEAQATGTPVVAARV-------GGLPVAVAEGETG 350
Query: 411 LLHPVGKEGITPL--AKNIVKLATHVERRLTMGKRGYERVK 449
LL +G P A + L E R+ MG+ E +
Sbjct: 351 LL----VDGHDPALWADTLATLLDDDETRIRMGQDAVEHAR 387
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) (taxid: 196164) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|C7R101|MSHA_JONDD D-inositol 3-phosphate glycosyltransferase OS=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R+ R +LG+ E + + KG D+ + ++L L++ ++ + P VIIG
Sbjct: 219 RQAERVALGLAPEGDVIVFAGRIQPLKGPDVLV----DALALLRSQQPDRPMPTLVIIGG 274
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRI 374
ELR V Q+ + V FV T+A ++ D + S+ E FG +
Sbjct: 275 PSGRPAAL-GELRARVFQRGVAQHVRFVPPADRPTLAQWMRVADYVAMPSR--NESFGLV 331
Query: 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414
IEA A PV+ GG T V + +GLL P
Sbjct: 332 AIEAQACGTPVIAADV-------GGLTTAVAHKKSGLLVP 364
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) (taxid: 471856) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|C3PK12|MSHA_CORA7 D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 230 PDT-YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
PD VV G +L D + +R R LG+ + A + + + KG D+
Sbjct: 187 PDNIVVVSPGADTDLYTPGTDRMTERA-----RRQLGIPLHTKVVAFVGRLQKFKGPDVL 241
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
+ + E +E +++L V VI G A + ++ N + ++ V F++
Sbjct: 242 IRATAELMERDPDRRLRV-----VICGGASGANSSPDT-YHNLARELGVERVVRFLSPRP 295
Query: 349 T---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV 405
VA Y AA V V + + E FG + +EA A PV+ A GG V
Sbjct: 296 PQELVAIYQAADIVAVPS---YNESFGLVAMEAQASGTPVV-------AAAVGGLPIAVA 345
Query: 406 NGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451
+G TGLL V A + +L RR++MG+ + ++
Sbjct: 346 DGDTGLL--VHSHSAQDWADALEQLLDDDPRRISMGEAAVDHAQQF 389
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) (taxid: 548476) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|A1R8N8|MSHA_ARTAT D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter aurescens (strain TC1) GN=mshA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 34/254 (13%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVL----REHVRESLGVRNEDLLFAIINSVSRGKGQD 286
D V H G + ++VA V +V R R GVR + + R KG
Sbjct: 176 DELVSHYGADLDRIDVAPPGVDLKVFTPSFRRKSRSLRGVRPDSFHILFAGRIQRLKGPQ 235
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
+F+ ++ ++++++ ++ + I+GS A+ + L++++ + D V ++
Sbjct: 236 VFV----KAAGILRKRRPDI-DLEMTILGSLSGAK---DFNLQHFIEDAGLADVV--THR 285
Query: 347 TLTVAPYLAA----IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402
VAP LA+ DV+V S + E FG + +EA A PV+ T GG +
Sbjct: 286 PPVVAPELASWFRSADVVVMPS--FSESFGLVALEAQACGTPVV-------ATNVGGLSR 336
Query: 403 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462
+ +G TG+L V + A + L V+ R MG R+ E +R A
Sbjct: 337 AISDGRTGIL--VDGHHPSDWADALEDLYDDVQTREDMG-----RLAATHAESFGWQRTA 389
Query: 463 VVLKEVLKKSKSHL 476
+ E +++ S L
Sbjct: 390 AITLESYREAVSGL 403
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Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway. Arthrobacter aurescens (strain TC1) (taxid: 290340) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 0 |
| >sp|Q8X0H8|ALG2_NEUCR Alpha-1,3/1,6-mannosyltransferase alg-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=alg-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428
E FG + +EAM +PVL GG TE VV G TG L G + V
Sbjct: 345 EHFGIVPLEAMLRGVPVL-------AANNGGPTETVVEGETGWLRDPNDVGEWAKVMDKV 397
Query: 429 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470
E MGK+G ERVK F + MAER+ +++ + K
Sbjct: 398 LNGMGEEELKRMGKKGVERVKGRFADTQMAERLEEIIERMPK 439
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Mannosylates Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 7 |
| >sp|O34413|YTCC_BACSU Putative glycosyltransferase YtcC OS=Bacillus subtilis (strain 168) GN=ytcC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 24/219 (10%)
Query: 256 LREHVRESLGVRNED-LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
+R+ R+ G+ ++ +LFA +S KG L +HS L+ + P VI
Sbjct: 178 VRKTYRKKYGIEDKKVILFA--GRLSPTKGPHLLIHSMRRILQ-------QHPDAVLVIA 228
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI----DVLVQNSQAWGEC 370
G + E++ Y+ + R H + A + + DV V +SQ W E
Sbjct: 229 GGKWFSDDS-ENQYVTYLRTLALPYRDHIIFTKFIPADDIPNLFLMADVFVCSSQ-WNEP 286
Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
R+ EAMA P++ T GG E+V + TGL+ + + AK I +
Sbjct: 287 LARVNYEAMAAGTPLIT-------TNRGGNGEVVKHEVTGLVIDSYNKP-SSFAKAIDRA 338
Query: 431 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469
T E M K + V+ +F H A+R+ V + VL
Sbjct: 339 FTDQELMNKMTKNARKHVEALFTFTHAAKRLNTVYQSVL 377
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 4 EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 224133786 | 481 | predicted protein [Populus trichocarpa] | 0.976 | 0.968 | 0.810 | 0.0 | |
| 302142552 | 463 | unnamed protein product [Vitis vinifera] | 0.968 | 0.997 | 0.771 | 0.0 | |
| 225458171 | 479 | PREDICTED: uncharacterized protein LOC10 | 0.976 | 0.972 | 0.752 | 0.0 | |
| 147771878 | 495 | hypothetical protein VITISV_033235 [Viti | 0.960 | 0.925 | 0.758 | 0.0 | |
| 356518559 | 464 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.993 | 0.751 | 0.0 | |
| 255538754 | 477 | glycosyltransferase, putative [Ricinus c | 0.964 | 0.964 | 0.747 | 0.0 | |
| 449436130 | 472 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.961 | 0.752 | 0.0 | |
| 225431277 | 466 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.993 | 0.736 | 0.0 | |
| 15222229 | 463 | UDP-glycosyltransferase-like protein [Ar | 0.943 | 0.971 | 0.745 | 0.0 | |
| 297839425 | 458 | glycosyl transferase family 1 protein [A | 0.932 | 0.971 | 0.743 | 0.0 |
| >gi|224133786|ref|XP_002327680.1| predicted protein [Populus trichocarpa] gi|222836765|gb|EEE75158.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/479 (81%), Positives = 423/479 (88%), Gaps = 13/479 (2%)
Query: 3 KHSATGWWVP--LTKRWILALLIMLSISTAIAFFIRAALDPCD----RHLEVSDKKRVQS 56
+HS T W P + KRW+L LLIMLS+ST IAFFI++A D CD + +V+ +
Sbjct: 7 QHSNTAGWAPPSVQKRWLLTLLIMLSVSTLIAFFIKSAFDSCDPPHPHNFDVAASNKPAK 66
Query: 57 QSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS 116
I T SPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLR VGT+V WITIQKPS
Sbjct: 67 VFSNSIKTAPSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRSVGTEVFWITIQKPS 126
Query: 117 EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRV 176
E DEV+YSLE KM RGVQV+SAKGQE I+TA KADL+VLNTAVAGKWLDAVLKE+VPRV
Sbjct: 127 ETDEVVYSLEQKMLVRGVQVLSAKGQEAIDTAFKADLVVLNTAVAGKWLDAVLKENVPRV 186
Query: 177 LPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236
LP VLWWIHEMRGHYFKLDYVKHLPLV GAMIDSHVTAEYWKNRT+ERLRIKMP+TYVVH
Sbjct: 187 LPKVLWWIHEMRGHYFKLDYVKHLPLVGGAMIDSHVTAEYWKNRTQERLRIKMPETYVVH 246
Query: 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296
LGNSKELMEVAED+VAKRVLREH+RESLGVR+ED+LFAIINSVSRGKGQDLFL SFYESL
Sbjct: 247 LGNSKELMEVAEDSVAKRVLREHIRESLGVRDEDILFAIINSVSRGKGQDLFLRSFYESL 306
Query: 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 356
++I+ KKL+VPS+HAVI+GSDM+AQTKFE+ELRNYVMQK IQDRVHF+NKTLTVAPYLAA
Sbjct: 307 QIIQVKKLKVPSMHAVIVGSDMSAQTKFETELRNYVMQKNIQDRVHFINKTLTVAPYLAA 366
Query: 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416
IDVLVQNSQA GECFGRITIEAMAFQLPVL GTAAGGTTEIVVNGTTGLLH VG
Sbjct: 367 IDVLVQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTTEIVVNGTTGLLHSVG 419
Query: 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 475
KEG+TPLAKNIVKLATHVERRLTMGKRGYERV+E+F EHHMA RIA VLKEVL+KSKSH
Sbjct: 420 KEGVTPLAKNIVKLATHVERRLTMGKRGYERVREMFLEHHMAHRIASVLKEVLRKSKSH 478
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142552|emb|CBI19755.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/477 (77%), Positives = 415/477 (87%), Gaps = 15/477 (3%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVP 60
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + R+Q S
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCN----TNSNTRIQVTS-- 52
Query: 61 RIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE 120
++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V W+TIQKP++ DE
Sbjct: 53 QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWLTIQKPTDSDE 112
Query: 121 VIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180
VIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V+KE+VPR+LP V
Sbjct: 113 VIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSVVKENVPRILPKV 172
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
LWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IKMP+TYVVHLGNS
Sbjct: 173 LWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIKMPETYVVHLGNS 232
Query: 241 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300
KELME+AE+NVAKRVLREHVRESLGVRNEDLLFA+INSVSRGKGQDLFL SFY+SL+LIK
Sbjct: 233 KELMEIAENNVAKRVLREHVRESLGVRNEDLLFAVINSVSRGKGQDLFLRSFYQSLQLIK 292
Query: 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 360
+KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTLTVAPYLA+IDVL
Sbjct: 293 GRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTLTVAPYLASIDVL 352
Query: 361 VQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420
VQNSQA GECFGRITIEAMAFQLPVL GTAAGGTTEIVVNGTTGLLH VGKEG+
Sbjct: 353 VQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTTEIVVNGTTGLLHNVGKEGV 405
Query: 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSHLY 477
PLA NIVKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKEVLKK+++H +
Sbjct: 406 KPLANNIVKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEVLKKAENHAF 462
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458171|ref|XP_002281084.1| PREDICTED: uncharacterized protein LOC100257473 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/489 (75%), Positives = 417/489 (85%), Gaps = 23/489 (4%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVS----------- 49
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + +
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCNTNSVTTTTTITTTPHYS 58
Query: 50 -DKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108
+ R+Q S ++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V
Sbjct: 59 YENTRIQVTS--QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV 116
Query: 109 WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAV 168
W+TIQKP++ DEVIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V
Sbjct: 117 WLTIQKPTDSDEVIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSV 176
Query: 169 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228
+KE+VPR+LP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IK
Sbjct: 177 VKENVPRILPKVLWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIK 236
Query: 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
MP+TYVVHLGNSKELME+AE+NVAKRVLREHVRESLGVRNEDLLFA+INSVSRGKGQDLF
Sbjct: 237 MPETYVVHLGNSKELMEIAENNVAKRVLREHVRESLGVRNEDLLFAVINSVSRGKGQDLF 296
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
L SFY+SL+LIK +KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTL
Sbjct: 297 LRSFYQSLQLIKGRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTL 356
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT 408
TVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVL GTAAGGTTEIVVNGT
Sbjct: 357 TVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTTEIVVNGT 409
Query: 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468
TGLLH VGKEG+ PLA NIVKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKEV
Sbjct: 410 TGLLHNVGKEGVKPLANNIVKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEV 469
Query: 469 LKKSKSHLY 477
LKK+++H +
Sbjct: 470 LKKAENHAF 478
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771878|emb|CAN73426.1| hypothetical protein VITISV_033235 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/481 (75%), Positives = 409/481 (85%), Gaps = 23/481 (4%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVS----------- 49
M K S + W+ KRW L L+ +LS ST I IRAA D C+ + +
Sbjct: 1 MAKQSTS--WLTFHKRWPLLLVALLSTSTVIVLLIRAASDSCNTNSVTTTTTITTTPHYS 58
Query: 50 -DKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108
+ R+Q S ++ T S+PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG +V
Sbjct: 59 YENTRIQVTS--QVETPSNPLRFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVV 116
Query: 109 WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAV 168
W+TIQKP++ DEVIYSLEH+M DRGV+V AKGQE I+TALKADL+VLNTAVAGKWLD+V
Sbjct: 117 WLTIQKPTDSDEVIYSLEHRMLDRGVKVFPAKGQEAIDTALKADLVVLNTAVAGKWLDSV 176
Query: 169 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228
+KE+VPR+LP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRERL IK
Sbjct: 177 VKENVPRILPKVLWWIHEMRGHYFKLEYVKHLPYVAGAMIDSHTTAEYWKNRTRERLGIK 236
Query: 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
MP+TYVVHLGNSKELME+AE+NVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF
Sbjct: 237 MPETYVVHLGNSKELMEIAENNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 296
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
L SFY+SL+LIK +KL+VPS+HAVI+GSDMNAQTKFE+ELRN+V++ KIQD+VHF+NKTL
Sbjct: 297 LRSFYQSLQLIKGRKLQVPSIHAVIVGSDMNAQTKFETELRNFVVENKIQDQVHFINKTL 356
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT 408
TVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVL GTAAGGTTEIVVNGT
Sbjct: 357 TVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTTEIVVNGT 409
Query: 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468
TGLLH VGKEG+ PLA NIVKLAT+VERRLTMGKRGYERVKE F EHHM+ERIA VLKE
Sbjct: 410 TGLLHNVGKEGVKPLANNIVKLATNVERRLTMGKRGYERVKERFLEHHMSERIASVLKEE 469
Query: 469 L 469
L
Sbjct: 470 L 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518559|ref|XP_003527946.1| PREDICTED: uncharacterized protein LOC100791337 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/475 (75%), Positives = 403/475 (84%), Gaps = 14/475 (2%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAA-LDPCD-RHLEVSDKKRVQSQS 58
M KHS KRW + L LS+ST +R+ D C+ H V+ +++S
Sbjct: 1 MAKHSVA----MAKKRWPIMLAAFLSVSTVTVLLMRSNNSDSCNTNHFTVAQDNQIRS-P 55
Query: 59 VPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE 118
V SSPL FMKSKLVL+VSHELSLSGGPLLLMELAFLLRGVG+ V WI+ QKPSE
Sbjct: 56 VQLTNAASSPLIFMKSKLVLMVSHELSLSGGPLLLMELAFLLRGVGSDVVWISNQKPSEH 115
Query: 119 DEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLP 178
D V+YSLE KM DRGVQV+SAKG+ I+TALKAD+++LNTAVAGKWLDA+LKE V VLP
Sbjct: 116 DRVVYSLESKMLDRGVQVLSAKGENAIDTALKADMVILNTAVAGKWLDAILKEKVAHVLP 175
Query: 179 NVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238
VLWWIHEMRGHYFK++YVKHLP VAGAMIDSH TAEYWKNRTRERL I+MP+TYVVHLG
Sbjct: 176 KVLWWIHEMRGHYFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIEMPETYVVHLG 235
Query: 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298
NSKELMEVAED+VAKRVLREHVRESLGVRN+DLLFAIINSVSRGKGQDLFL SFYESL+L
Sbjct: 236 NSKELMEVAEDSVAKRVLREHVRESLGVRNDDLLFAIINSVSRGKGQDLFLRSFYESLQL 295
Query: 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 358
I+EKKL++P +HAVI+GSDMNAQTKFE ELR +V++KKIQ+RVHFVNKTL VAPYLAAID
Sbjct: 296 IQEKKLQLPFLHAVIVGSDMNAQTKFEMELRKFVVEKKIQNRVHFVNKTLAVAPYLAAID 355
Query: 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKE 418
VLVQNSQA GECFGRITIEAMAF+LPVL GTAAGGT EIVVNGTTGLLHPVGKE
Sbjct: 356 VLVQNSQARGECFGRITIEAMAFRLPVL-------GTAAGGTMEIVVNGTTGLLHPVGKE 408
Query: 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473
G+TPLAKNIVKLA+HVE+RLTMGK+GYERVKE F EHHM++RIA+VLKEVL+K+K
Sbjct: 409 GVTPLAKNIVKLASHVEKRLTMGKKGYERVKERFLEHHMSQRIALVLKEVLQKAK 463
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538754|ref|XP_002510442.1| glycosyltransferase, putative [Ricinus communis] gi|223551143|gb|EEF52629.1| glycosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/491 (74%), Positives = 403/491 (82%), Gaps = 31/491 (6%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDP---------------CDRH 45
M K S + W RW L +L ++ST I F IR+A D DR
Sbjct: 1 MAKQS-SAWITKHKNRWPLMILAFFTLSTLIVFSIRSASDSCHSSSNITTTATTANVDRF 59
Query: 46 LE--VSDKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV 103
E V K ++ S P +PL FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV
Sbjct: 60 GEPKVDSKPQIHSSVAP------NPLDFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV 113
Query: 104 GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGK 163
G +V WIT QKP+E DEVIYSLE+KM DRGVQV SAKGQ+ I+TALKADL+VLNTAVAGK
Sbjct: 114 GAEVVWITNQKPTETDEVIYSLENKMLDRGVQVFSAKGQKAIDTALKADLVVLNTAVAGK 173
Query: 164 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223
WLDA LKE V +VLP VLWWIHEMRGHYFKL+YVKHLP VAGAMIDSH TAEYWKNRTRE
Sbjct: 174 WLDATLKESVQQVLPKVLWWIHEMRGHYFKLEYVKHLPFVAGAMIDSHTTAEYWKNRTRE 233
Query: 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283
RL IKMP+TYVVHLGNSK+LMEVAED+VAKRVL EHVRESLGVRN+DLLFAIINSVSRGK
Sbjct: 234 RLGIKMPETYVVHLGNSKDLMEVAEDSVAKRVLCEHVRESLGVRNDDLLFAIINSVSRGK 293
Query: 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343
GQDLFL SFYESL+LI+EKKL+VPS+HAV++GSDMNAQTKFE ELR +V +KKIQDRVHF
Sbjct: 294 GQDLFLRSFYESLQLIQEKKLKVPSLHAVVVGSDMNAQTKFEMELRKFVQEKKIQDRVHF 353
Query: 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI 403
VNKTLTVAPYLA+IDVLVQNSQA GECFGRITIEAMAFQLPVL GTAAGGT EI
Sbjct: 354 VNKTLTVAPYLASIDVLVQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTMEI 406
Query: 404 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 463
VVNGTTGLLHP GKEG+TPLA NIVKLATHVERRLTMGK GY+RVKE F EHHM+ RIA+
Sbjct: 407 VVNGTTGLLHPAGKEGVTPLANNIVKLATHVERRLTMGKNGYKRVKERFLEHHMSHRIAL 466
Query: 464 VLKEVLKKSKS 474
VLKEVL+K+K+
Sbjct: 467 VLKEVLRKAKT 477
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436130|ref|XP_004135847.1| PREDICTED: uncharacterized protein LOC101206589 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/465 (75%), Positives = 400/465 (86%), Gaps = 11/465 (2%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPC---DRHLEVSDKKRVQSQSVPRIATKS-SPLS 70
KRW L +L ++SISTA+ FF+R D C D V +K P+ K+ +PL
Sbjct: 14 KRWPLMILALVSISTAMVFFMRTTFDSCTGNDNRRFVEEKGIGSKILSPQNERKAPNPLD 73
Query: 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW 130
FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT+V WIT QKP E DEV+YSLE KM
Sbjct: 74 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTQVVWITNQKPPEPDEVVYSLERKML 133
Query: 131 DRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190
DRGVQV+SAK QE + TALKA L+VLNTAVAGKWLDAVLKE+VPRVLP VLWWIHEMRG+
Sbjct: 134 DRGVQVLSAKEQEAVETALKAHLVVLNTAVAGKWLDAVLKENVPRVLPKVLWWIHEMRGN 193
Query: 191 YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250
YFK++YVKHLP VAGAMIDSH TAEYWKNRT +RL I+MP+TYVVHLGNSK+LMEVAE+N
Sbjct: 194 YFKVEYVKHLPFVAGAMIDSHTTAEYWKNRTWDRLGIQMPETYVVHLGNSKDLMEVAENN 253
Query: 251 VAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310
VAKRVLREH+RESLGVRNED+LFAIINSVSRGKGQDLFL +F++SL++I++KKL VP +H
Sbjct: 254 VAKRVLREHIRESLGVRNEDILFAIINSVSRGKGQDLFLRAFHQSLQMIQDKKLRVPRIH 313
Query: 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370
AV++GSDMNA TKFE+ELRN+V + KIQDRVHFVNKTL+VAPYLA+IDVLVQNSQ GEC
Sbjct: 314 AVVVGSDMNAHTKFETELRNFVNENKIQDRVHFVNKTLSVAPYLASIDVLVQNSQGRGEC 373
Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
FGRITIEAMAFQLPVL GTAAGGT EIVVNGTTGLLHP GKEG+TPLA NIVKL
Sbjct: 374 FGRITIEAMAFQLPVL-------GTAAGGTMEIVVNGTTGLLHPAGKEGVTPLAHNIVKL 426
Query: 431 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 475
ATHVERRLTMGK+GYERV+++F E HM +RIAVVLK+V++K+KSH
Sbjct: 427 ATHVERRLTMGKKGYERVRQMFLEQHMMQRIAVVLKKVMEKAKSH 471
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431277|ref|XP_002268739.1| PREDICTED: uncharacterized protein LOC100243789 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/475 (73%), Positives = 396/475 (83%), Gaps = 12/475 (2%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVP 60
M +HSA + L K+++ AL+ S+ T + RA CDRH SD + + +P
Sbjct: 1 MARHSAPRF--SLRKKFLFALVFFFSVPTVVFLIKRAPSISCDRH---SDAGVKRFEPLP 55
Query: 61 RIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE 120
+ SPLSFMKSK VLLVSHELSLSGGPLLLMELAFLLR VG +V WIT KPSE DE
Sbjct: 56 QFGAAPSPLSFMKSKRVLLVSHELSLSGGPLLLMELAFLLRSVGAEVCWITNHKPSETDE 115
Query: 121 VIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180
VIYSLE+KM RGVQV+ AKG+E IN ALKADL+VLNT +AGKWLD VLKE+VP VLP V
Sbjct: 116 VIYSLENKMQHRGVQVLPAKGREAINRALKADLLVLNTVMAGKWLDDVLKENVPHVLPKV 175
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
LWWIHE++GHYF+L+YV+HLPLVA AMIDSHV AEYWK TR+ LRIKMPDTYVVHLGNS
Sbjct: 176 LWWIHEIQGHYFQLEYVRHLPLVAAAMIDSHVAAEYWKTGTRDYLRIKMPDTYVVHLGNS 235
Query: 241 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300
K+LM++AED+VAKRVLREHVRESLGVR+ED+LFA+INSVSRGKGQDLFL SFYESL+LI
Sbjct: 236 KDLMDIAEDSVAKRVLREHVRESLGVRDEDVLFAMINSVSRGKGQDLFLQSFYESLQLII 295
Query: 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVL 360
+KKL VPS+HAVI+GSDM AQ KFES+LR++V KKIQDRVHFVNKTLTVAPYLAAIDVL
Sbjct: 296 QKKLRVPSMHAVIVGSDMTAQPKFESQLRDFVRVKKIQDRVHFVNKTLTVAPYLAAIDVL 355
Query: 361 VQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420
VQNSQA GECFGRITIEAMAFQLPVL GTAAGGTTEIVVNG+TGLLHP GKEG+
Sbjct: 356 VQNSQARGECFGRITIEAMAFQLPVL-------GTAAGGTTEIVVNGSTGLLHPTGKEGV 408
Query: 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 475
TPLAKNIV LAT+V RRLT+GK GYE+VKE F EHHMA RIA VLKEVL+K+KSH
Sbjct: 409 TPLAKNIVTLATNVHRRLTLGKTGYEKVKETFLEHHMAHRIATVLKEVLQKAKSH 463
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222229|ref|NP_177675.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] gi|30793985|gb|AAP40442.1| unknown protein [Arabidopsis thaliana] gi|110739259|dbj|BAF01543.1| hypothetical protein [Arabidopsis thaliana] gi|332197597|gb|AEE35718.1| UDP-glycosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/460 (74%), Positives = 390/460 (84%), Gaps = 10/460 (2%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMKS 74
KRW L +L+ LS+ST +R++ + C + ++K +S + +S+PL FMKS
Sbjct: 10 KRWALMVLLFLSVSTVCMILVRSSFETCSISSQFVEEKNGESSAAK---FQSNPLDFMKS 66
Query: 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
KLVLLVSHELSLSGGPLLLMELAFLLRGVG V WIT QKP E+DEV+YSLEHKM DRGV
Sbjct: 67 KLVLLVSHELSLSGGPLLLMELAFLLRGVGADVVWITNQKPLEDDEVVYSLEHKMLDRGV 126
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++T+LKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 127 QVISAKGQKAVDTSLKADLIVLNTAVAGKWLDAVLKENVVKVLPKILWWIHEMRGHYFNA 186
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TA YWKNRT+ RL IKMP TYVVHLGNSKELMEVAED+VAKR
Sbjct: 187 DLVKHLPFVAGAMIDSHATAGYWKNRTQARLGIKMPKTYVVHLGNSKELMEVAEDSVAKR 246
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ESLE IKEKKL+VP++HAV++
Sbjct: 247 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLERIKEKKLQVPTMHAVVV 306
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 307 GSDMSKQTKFETELRNFVREKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 366
Query: 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434
TIEAMAF+LPVL GTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLAT V
Sbjct: 367 TIEAMAFKLPVL-------GTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLATQV 419
Query: 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474
E RL MGK GYERVKE+F EHHM+ RIA VLKEVL+ +K+
Sbjct: 420 ELRLRMGKNGYERVKEMFLEHHMSHRIASVLKEVLQHAKA 459
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839425|ref|XP_002887594.1| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata] gi|297333435|gb|EFH63853.1| glycosyl transferase family 1 protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/460 (74%), Positives = 389/460 (84%), Gaps = 15/460 (3%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMKS 74
KRW L +L+ LS+ST +R++ + C + D ++ QS +PL+FMKS
Sbjct: 10 KRWALMVLLFLSVSTVCVILVRSSFESCSVGGQFVDSSALRFQS--------NPLAFMKS 61
Query: 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
KLVLLVSHELSLSGGPLLLMELAFLLRGVG +V WIT QKP EEDEV+YSLEHKM DRGV
Sbjct: 62 KLVLLVSHELSLSGGPLLLMELAFLLRGVGAEVVWITNQKPLEEDEVVYSLEHKMLDRGV 121
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++ ALKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 122 QVISAKGQKAVDIALKADLIVLNTAVAGKWLDAVLKENVFKVLPKILWWIHEMRGHYFNP 181
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TAEYW+NRT+ RL IKMP TYVVHLGNSK+LMEVAED+VAKR
Sbjct: 182 DLVKHLPFVAGAMIDSHATAEYWQNRTQARLGIKMPKTYVVHLGNSKDLMEVAEDSVAKR 241
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ESLE+IKEKKL+VP++HAV++
Sbjct: 242 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLEIIKEKKLQVPTMHAVVV 301
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 302 GSDMSRQTKFETELRNFVQEKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 361
Query: 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434
TIEAMAF+LPVL GTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLA V
Sbjct: 362 TIEAMAFKLPVL-------GTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLAMQV 414
Query: 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474
E RLTMG GYERVKE+F EHHM+ RIA VLKEVL+ +K+
Sbjct: 415 ELRLTMGNNGYERVKEMFLEHHMSHRIASVLKEVLQHAKA 454
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| TAIR|locus:2018392 | 463 | AT1G75420 [Arabidopsis thalian | 0.918 | 0.946 | 0.698 | 1.9e-161 | |
| TAIR|locus:2013089 | 479 | AT1G19710 [Arabidopsis thalian | 0.953 | 0.949 | 0.670 | 1.1e-156 | |
| TAIR|locus:2093925 | 697 | AT3G15940 [Arabidopsis thalian | 0.291 | 0.199 | 0.412 | 6.5e-34 | |
| TAIR|locus:2018144 | 670 | AT1G52420 [Arabidopsis thalian | 0.291 | 0.207 | 0.371 | 8e-32 | |
| TIGR_CMR|BA_1558 | 381 | BA_1558 "glycosyl transferase, | 0.236 | 0.296 | 0.346 | 1.2e-06 | |
| TIGR_CMR|CHY_1134 | 378 | CHY_1134 "glycosyl transferase | 0.238 | 0.301 | 0.328 | 4.2e-06 | |
| TIGR_CMR|CPS_4999 | 367 | CPS_4999 "glycosyl transferase | 0.295 | 0.384 | 0.296 | 6.7e-05 | |
| UNIPROTKB|Q47WI9 | 364 | CPS_4182 "Putative lipopolysac | 0.350 | 0.458 | 0.261 | 0.00011 | |
| TIGR_CMR|CPS_4182 | 364 | CPS_4182 "putative lipopolysac | 0.350 | 0.458 | 0.261 | 0.00011 | |
| TIGR_CMR|CHY_1814 | 369 | CHY_1814 "glycosyltransferase, | 0.287 | 0.371 | 0.289 | 0.00041 |
| TAIR|locus:2018392 AT1G75420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
Identities = 313/448 (69%), Positives = 356/448 (79%)
Query: 15 KRWILALLIMLSISTAIAFFIRAALDPCDRHLEVSDKKRVQSQSVPRIATKSSPLSFMXX 74
KRW L +L+ LS+ST +R++ + C + ++K +S + +S+PL FM
Sbjct: 10 KRWALMVLLFLSVSTVCMILVRSSFETCSISSQFVEEKNGESSAAK---FQSNPLDFMKS 66
Query: 75 XXXXXXXXXXXXXGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
GGPLLLMELAFLLRGVG V WIT QKP E+DEV+YSLEHKM DRGV
Sbjct: 67 KLVLLVSHELSLSGGPLLLMELAFLLRGVGADVVWITNQKPLEDDEVVYSLEHKMLDRGV 126
Query: 135 QVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL 194
QVISAKGQ+ ++T+LKADLIVLNTAVAGKWLDAVLKE+V +VLP +LWWIHEMRGHYF
Sbjct: 127 QVISAKGQKAVDTSLKADLIVLNTAVAGKWLDAVLKENVVKVLPKILWWIHEMRGHYFNA 186
Query: 195 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR 254
D VKHLP VAGAMIDSH TA YWKNRT+ RL IKMP TYVVHLGNSKELMEVAED+VAKR
Sbjct: 187 DLVKHLPFVAGAMIDSHATAGYWKNRTQARLGIKMPKTYVVHLGNSKELMEVAEDSVAKR 246
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVII 314
VLREHVRESLGVRNEDLLF IINSVSRGKGQDLFL +F+ES VP++HAV++
Sbjct: 247 VLREHVRESLGVRNEDLLFGIINSVSRGKGQDLFLRAFHESLERIKEKKLQVPTMHAVVV 306
Query: 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
GSDM+ QTKFE+ELRN+V +KK+++ VHFVNKTLTVAPY+AAIDVLVQNSQA GECFGRI
Sbjct: 307 GSDMSKQTKFETELRNFVREKKLENFVHFVNKTLTVAPYIAAIDVLVQNSQARGECFGRI 366
Query: 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434
TIEAMAF+LPVL GTAAGGT EIVVNGTTGLLH GKEG+ PLAKNIVKLAT V
Sbjct: 367 TIEAMAFKLPVL-------GTAAGGTMEIVVNGTTGLLHSAGKEGVIPLAKNIVKLATQV 419
Query: 435 ERRLTMGKRGYERVKEIFQEHHMAERIA 462
E RL MGK GYERVKE+F EHHM+ RIA
Sbjct: 420 ELRLRMGKNGYERVKEMFLEHHMSHRIA 447
|
|
| TAIR|locus:2013089 AT1G19710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
Identities = 312/465 (67%), Positives = 356/465 (76%)
Query: 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCD-RHLEVSDKKRVQSQ-S 58
M K S + W KRW L +L++LS+ST +R+ D C S +K S
Sbjct: 1 MAKPSTSMWATLQKKRWPLMILLVLSVSTVGMILVRSTFDSCSVSGKRCSREKEDNSDIK 60
Query: 59 VPRIATKSSPLSFMXXXXXXXXXXXXXXXGGPLLLMELAFLLRGVGTKVNWITIQKPSEE 118
+ ++ +PL FM GGPLLLMELAFLLRGV ++V WIT QKP EE
Sbjct: 61 IQSVSGSLNPLEFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVESEVVWITNQKPVEE 120
Query: 119 DEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLP 178
DEVI LEHKM DRGVQVISAK Q+ I+TALK+DL+VLNTAVAGKWLDAVLK++VP+VLP
Sbjct: 121 DEVIKVLEHKMLDRGVQVISAKSQKAIDTALKSDLVVLNTAVAGKWLDAVLKDNVPKVLP 180
Query: 179 NVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238
VLWWIHEMRGHYFK D VKHLP VAGAMIDSH TAEYWKNRT +RL IKMP TYVVHLG
Sbjct: 181 KVLWWIHEMRGHYFKPDLVKHLPFVAGAMIDSHATAEYWKNRTHDRLGIKMPKTYVVHLG 240
Query: 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXX 298
NSKELMEVAED+ AK VLRE VRESLGVRNED+LF IINSVSRGKGQDLFL +F+ES
Sbjct: 241 NSKELMEVAEDSFAKNVLREQVRESLGVRNEDILFGIINSVSRGKGQDLFLRAFHESLKV 300
Query: 299 XXXXXXX-VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 357
VP++HAV++GSDM+AQTKFE+ELRN+V + K+Q VHFVNKT+ VAPYLAAI
Sbjct: 301 IKETKKLEVPTMHAVVVGSDMSAQTKFETELRNFVQEMKLQKIVHFVNKTMKVAPYLAAI 360
Query: 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417
DVLVQNSQA GECFGRITIEAMAF+LPVL GTAAGGT EIVVN TTGLLH GK
Sbjct: 361 DVLVQNSQARGECFGRITIEAMAFKLPVL-------GTAAGGTMEIVVNRTTGLLHNTGK 413
Query: 418 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462
+G+ PLAKNIVKLAT+V+ R TMGK+GYERVKE+F EHHM+ RIA
Sbjct: 414 DGVLPLAKNIVKLATNVKMRNTMGKKGYERVKEMFLEHHMSHRIA 458
|
|
| TAIR|locus:2093925 AT3G15940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 61/148 (41%), Positives = 88/148 (59%)
Query: 314 IGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372
+GS N + + E+ +++ + + V + T VA +A DV V NSQ GE FG
Sbjct: 547 VGSKSN-KVAYVKEMLSFLSNNGNLSNSVLWTPATTRVASLYSAADVYVTNSQGVGETFG 605
Query: 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432
R+TIEAMA+ LPVL GT AGGT EIV + TGLLHPVG+ G LA+N++ L
Sbjct: 606 RVTIEAMAYGLPVL-------GTDAGGTKEIVEHNVTGLLHPVGRAGNKVLAQNLLFLLR 658
Query: 433 HVERRLTMGKRGYERVKEIFQEHHMAER 460
+ RL +G +G E V++++ + HM +R
Sbjct: 659 NPSTRLQLGSQGREIVEKMYMKQHMYKR 686
|
|
| TAIR|locus:2018144 AT1G52420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 55/148 (37%), Positives = 84/148 (56%)
Query: 314 IGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFG 372
+GS N + + E+ +++ + V + T VA +A DV V NSQ GE FG
Sbjct: 520 VGSKSN-KVGYVKEMLSFLSNSGNLSKSVMWTPATTRVASLYSAADVYVTNSQGVGETFG 578
Query: 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432
R+TIEAMA+ L V+ GT AGGT E+V + TGLLH +G+ G LA N++ L
Sbjct: 579 RVTIEAMAYGLAVV-------GTDAGGTKEMVQHNMTGLLHSMGRSGNKELAHNLLYLLR 631
Query: 433 HVERRLTMGKRGYERVKEIFQEHHMAER 460
+ + RL +G G + V++++ + HM +R
Sbjct: 632 NPDERLRLGSEGRKMVEKMYMKQHMYKR 659
|
|
| TIGR_CMR|BA_1558 BA_1558 "glycosyl transferase, group 1 family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 43/124 (34%), Positives = 63/124 (50%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA 396
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P C+ GT
Sbjct: 252 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVP-----CI--GTR 302
Query: 397 AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456
GG E++ +G TG L VG T +A ++L E MG+R E V E F+
Sbjct: 303 VGGIPEVIQHGDTGYLCEVGDT--TGVADQAIQLLKDEELHRNMGERARESVYEQFRSEK 360
Query: 457 MAER 460
+ +
Sbjct: 361 IVSQ 364
|
|
| TIGR_CMR|CHY_1134 CHY_1134 "glycosyl transferase, group 1 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 41/125 (32%), Positives = 64/125 (51%)
Query: 330 NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389
N V +K + ++V F+ K V+ L+ DVL+ S+ E FG + +EAMA ++PV+ +
Sbjct: 247 NEVQKKNLTNKVKFLGKMPKVSDVLSISDVLLITSET--ESFGLVALEAMAMEVPVVAYR 304
Query: 390 CLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449
GG E+VV+G TG L V + A+ +VKL + G+ G R K
Sbjct: 305 -------VGGLPEVVVDGQTGYL--VDYLDLEKAAEAVVKLLKEPWLKRDFGRWGRIRAK 355
Query: 450 EIFQE 454
E F +
Sbjct: 356 ERFSK 360
|
|
| TIGR_CMR|CPS_4999 CPS_4999 "glycosyl transferase, group 1 family protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 46/155 (29%), Positives = 70/155 (45%)
Query: 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365
+P++H I G D AQ K +L V + +I + V F+ + +L A D+ +Q S
Sbjct: 217 MPALHLYIAG-DGAAQEK--QKLTELVNKLQINENVTFLGQINNAFSWLEACDIFIQPSV 273
Query: 366 AWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 425
E FG + +EA A PV+ T GG EI+V+ TGLL V +
Sbjct: 274 E--EAFGLVFVEAGAKAKPVI-------ATTVGGIKEIIVSKETGLL--VLPSSPKAVEH 322
Query: 426 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460
+ L R G+ GY+R+ E F +M +
Sbjct: 323 ALAILINSPPLRQQYGENGYKRITEHFSLTNMVNK 357
|
|
| UNIPROTKB|Q47WI9 CPS_4182 "Putative lipopolysaccharide core biosynthesis mannosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 50/191 (26%), Positives = 86/191 (45%)
Query: 274 AIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNYVM 333
AI+ V + KG LF+ S + P AVI+GS ++ F +EL++ +
Sbjct: 185 AILGRVRKQKGVHLFVESCIDILKDR-------PDYTAVIVGSISSSNESFVNELQSKID 237
Query: 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391
Q + +R+ F + + +++ ++V S+ E FG +EAM+ VL +
Sbjct: 238 QAGLTERIVFAGEQNFADIPKIFSSLSLVVALSE--NEGFGLTILEAMSSGAAVLASE-- 293
Query: 392 YQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451
AG E+V G G + P+ + + + + L E+ + MG+ G ERV E
Sbjct: 294 -----AGAWPEVVRQGVDGYVVPIND--LDAVTEKMSLLLADEEKLMQMGRDGRERVLE- 345
Query: 452 FQEHHMAERIA 462
H+ ER A
Sbjct: 346 ---HYSVEREA 353
|
|
| TIGR_CMR|CPS_4182 CPS_4182 "putative lipopolysaccharide core biosynthesis mannosyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 50/191 (26%), Positives = 86/191 (45%)
Query: 274 AIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNYVM 333
AI+ V + KG LF+ S + P AVI+GS ++ F +EL++ +
Sbjct: 185 AILGRVRKQKGVHLFVESCIDILKDR-------PDYTAVIVGSISSSNESFVNELQSKID 237
Query: 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391
Q + +R+ F + + +++ ++V S+ E FG +EAM+ VL +
Sbjct: 238 QAGLTERIVFAGEQNFADIPKIFSSLSLVVALSE--NEGFGLTILEAMSSGAAVLASE-- 293
Query: 392 YQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451
AG E+V G G + P+ + + + + L E+ + MG+ G ERV E
Sbjct: 294 -----AGAWPEVVRQGVDGYVVPIND--LDAVTEKMSLLLADEEKLMQMGRDGRERVLE- 345
Query: 452 FQEHHMAERIA 462
H+ ER A
Sbjct: 346 ---HYSVEREA 353
|
|
| TIGR_CMR|CHY_1814 CHY_1814 "glycosyltransferase, group 1 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 118 (46.6 bits), Expect = 0.00041, P = 0.00041
Identities = 44/152 (28%), Positives = 71/152 (46%)
Query: 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368
V IIG D ++EL+ + I+ V F A + ID+ V S + G
Sbjct: 223 VFRAIIGGD----GPLKNELKELAKELGIESLVTFPGYIPNPAEFYREIDIFVLPSISEG 278
Query: 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428
+EAM+++L V+ T GG E++ +G GLL P K+ T L + +
Sbjct: 279 LPLS--LLEAMSWKLAVI-------ATNVGGIPEVINSGENGLLVPP-KDA-TALTEALY 327
Query: 429 KLATHVERRLTMGKRGYERVKEIFQEHHMAER 460
L + RL++G+R Y ++E + HMA+R
Sbjct: 328 TLIFNENFRLSLGERAYITIREKYNVAHMAQR 359
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 477 440 0.00089 118 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 623 (66 KB)
Total size of DFA: 272 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.10u 0.10s 31.20t Elapsed: 00:00:01
Total cpu time: 31.10u 0.10s 31.20t Elapsed: 00:00:01
Start: Sat May 11 13:02:45 2013 End: Sat May 11 13:02:46 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| cd03801 | 374 | cd03801, GT1_YqgM_like, This family is most closel | 3e-29 | |
| cd03808 | 359 | cd03808, GT1_cap1E_like, This family is most close | 6e-21 | |
| cd03819 | 355 | cd03819, GT1_WavL_like, This family is most closel | 1e-16 | |
| cd03798 | 377 | cd03798, GT1_wlbH_like, This family is most closel | 1e-16 | |
| COG0438 | 381 | COG0438, RfaG, Glycosyltransferase [Cell envelope | 4e-15 | |
| cd03811 | 353 | cd03811, GT1_WabH_like, This family is most closel | 4e-14 | |
| cd04962 | 371 | cd04962, GT1_like_5, This family is most closely r | 3e-13 | |
| cd03795 | 357 | cd03795, GT1_like_4, This family is most closely r | 3e-13 | |
| cd03807 | 365 | cd03807, GT1_WbnK_like, This family is most closel | 4e-13 | |
| TIGR03999 | 374 | TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosamin | 4e-13 | |
| cd03820 | 348 | cd03820, GT1_amsD_like, This family is most closel | 5e-13 | |
| pfam00534 | 158 | pfam00534, Glycos_transf_1, Glycosyl transferases | 6e-13 | |
| cd03800 | 398 | cd03800, GT1_Sucrose_synthase, This family is most | 4e-12 | |
| cd03822 | 366 | cd03822, GT1_ecORF704_like, This family is most cl | 4e-11 | |
| cd03823 | 359 | cd03823, GT1_ExpE7_like, This family is most close | 3e-10 | |
| cd03817 | 374 | cd03817, GT1_UGDG_like, This family is most closel | 8e-10 | |
| cd03794 | 394 | cd03794, GT1_wbuB_like, This family is most closel | 8e-10 | |
| cd03799 | 355 | cd03799, GT1_amsK_like, This is a family of GT1 gl | 1e-09 | |
| cd05844 | 367 | cd05844, GT1_like_7, Glycosyltransferases catalyze | 7e-09 | |
| cd04951 | 360 | cd04951, GT1_WbdM_like, This family is most closel | 1e-08 | |
| cd03805 | 392 | cd03805, GT1_ALG2_like, This family is most closel | 2e-08 | |
| cd03825 | 365 | cd03825, GT1_wcfI_like, This family is most closel | 2e-08 | |
| cd03814 | 364 | cd03814, GT1_like_2, This family is most closely r | 5e-08 | |
| TIGR02149 | 388 | TIGR02149, glgA_Coryne, glycogen synthase, Coryneb | 6e-08 | |
| TIGR03088 | 374 | TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH | 1e-07 | |
| cd01635 | 229 | cd01635, Glycosyltransferase_GTB_type, Glycosyltra | 2e-07 | |
| PRK15484 | 380 | PRK15484, PRK15484, lipopolysaccharide 1,2-N-acety | 4e-06 | |
| cd03813 | 475 | cd03813, GT1_like_3, This family is most closely r | 8e-06 | |
| cd03821 | 375 | cd03821, GT1_Bme6_like, This family is most closel | 2e-05 | |
| TIGR04157 | 406 | TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG | 2e-05 | |
| TIGR03449 | 405 | TIGR03449, mycothiol_MshA, D-inositol-3-phosphate | 2e-04 | |
| cd03792 | 372 | cd03792, GT1_Trehalose_phosphorylase, Trehalose ph | 7e-04 | |
| PLN02871 | 465 | PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoqu | 0.003 |
| >gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 98/405 (24%), Positives = 155/405 (38%), Gaps = 47/405 (11%)
Query: 77 VLLVSHE--LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE--------VIYSLE 126
+LLV+ E S+ G ++ELA L G +V +T DE V
Sbjct: 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPL 61
Query: 127 HKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKE-DVPRVL-PNVLWWI 184
++ + ++ A + + D++ + +A + +P VL + L +
Sbjct: 62 LRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG 121
Query: 185 HEMRGHYFKLDYVKHLPLVAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVVHLGNSKEL 243
L + L A D + +E + RE + V+ G
Sbjct: 122 RPGNELGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNG----- 176
Query: 244 MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303
++ A R R LG+ ++ + + + KG DL L E+L +++
Sbjct: 177 VDTERFRPAPR----AARRRLGIPEDEPVILFVGRLVPRKGVDLLL----EALAKLRK-- 226
Query: 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLV 361
E P V VI+G EL + + DRV F+ + AA DV V
Sbjct: 227 -EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFV 280
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421
S E FG + +EAMA LPV+ + GG E+V +G TGLL P G
Sbjct: 281 LPSLY--EGFGLVLLEAMAAGLPVV-------ASDVGGIPEVVEDGETGLLVPPGDP--E 329
Query: 422 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466
LA+ I++L E R +G+ ERV E F +A R V
Sbjct: 330 ALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. Length = 374 |
| >gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-21
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 24/180 (13%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRV 341
KG D L E+ ++K K P+V +++G D E+ ++ RV
Sbjct: 201 KGIDELL----EAARILKAKG---PNVRLLLVGDGDEENPAA-ILEIEKLG----LEGRV 248
Query: 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT 401
F+ V LAA DV V S + E R+ +EAMA PV+ T G
Sbjct: 249 EFLGFRDDVPELLAAADVFVLPS--YREGLPRVLLEAMAMGRPVI-------ATDVPGCR 299
Query: 402 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461
E V++G G L P G LA I +L E R MG+ +R +E F E + +++
Sbjct: 300 EAVIDGVNGFLVPPGDA--EALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKL 357
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. Length = 359 |
| >gnl|CDD|99989 cd03819, GT1_WavL_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 19/201 (9%)
Query: 252 AKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311
+R+L + + + ++R KGQ++F+ E+L +K+ + P VH
Sbjct: 169 PERILAL--AREWPLPKGKPVILLPGRLTRWKGQEVFI----EALARLKK---DDPDVHL 219
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF 371
+I+G + + +EL + + +QDRV FV + A D++V S E F
Sbjct: 220 LIVGDA-QGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE-PEAF 277
Query: 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431
GR +EA A PV+ + GG E V G TGLL P G A + +
Sbjct: 278 GRTAVEAQAMGRPVI-------ASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSL 330
Query: 432 THVERRLTMGKRGYERVKEIF 452
E R M + V+ +F
Sbjct: 331 L-PEGRAKMFAKARMCVETLF 350
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. Length = 355 |
| >gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 31/190 (16%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG D + E+L + +K+ P VH VI+G L + ++DRV
Sbjct: 215 KGIDYLI----EALARLLKKR---PDVHLVIVGDG-----PLREALEALAAELGLEDRVT 262
Query: 343 FV----NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG 398
F+ ++ V Y AA DV V S E FG + +EAMA LPV+ T G
Sbjct: 263 FLGAVPHEE--VPAYYAAADVFVLPS--LREGFGLVLLEAMACGLPVV-------ATDVG 311
Query: 399 GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 458
G EI+ +G GLL P G LA+ I++L R +G+ RV E F ++A
Sbjct: 312 GIPEIITDGENGLLVPPG--DPEALAEAILRLLADPWLR--LGRAARRRVAERFSWENVA 367
Query: 459 ERIAVVLKEV 468
ER+ + +EV
Sbjct: 368 ERLLELYREV 377
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. Length = 377 |
| >gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.5 bits (187), Expect = 4e-15
Identities = 86/418 (20%), Positives = 147/418 (35%), Gaps = 54/418 (12%)
Query: 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE----- 126
MK ++++ + G ++ELA LR +G + I E I L
Sbjct: 1 MKILILIIYPPP-RVGGIERYVLELAKALRLLGRGHEVLVIAPEKLEGLGIEVLRLPSVS 59
Query: 127 HKMWDRGVQVISAKGQETINTALKADLIVLNTA----VAGKWLDAVLKEDVPRVL----- 177
+ ++ + + L D+I ++ L + +P V+
Sbjct: 60 LPLLIVRLRPALLRLLLLLKRLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGL 119
Query: 178 -PNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236
P +L + +K L + D + E L + V+
Sbjct: 120 IPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKELLEALGVP-NKIVVIP 178
Query: 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296
G E A + + + + KG DL +
Sbjct: 179 NGIDTEKFAPARIGLLPE-------------GGKFVVLYVGRLDPEKGLDLLI------- 218
Query: 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN--KTLTVAPYL 354
E + K P + VI+G + EL + ++D V F+ +A L
Sbjct: 219 EAAAKLKKRGPDIKLVIVGD----GPERREELEKLAKKLGLEDNVKFLGYVPDEELAELL 274
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414
A+ DV V S E FG + +EAMA PV+ + GG E+V +G TGLL
Sbjct: 275 ASADVFVLPSL--SEGFGLVLLEAMAAGTPVI-------ASDVGGIPEVVEDGETGLL-- 323
Query: 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472
V + LA + +L E R +G+ ERV+E F +AE++ + +E+L +
Sbjct: 324 VPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELLAEK 381
|
Length = 381 |
| >gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 22/176 (12%)
Query: 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339
S KG D + +F + E P VI+G EL + + D
Sbjct: 199 SPQKGFDTLIRAFALL-------RKEGPDARLVILGDG-----PLREELEALAKELGLAD 246
Query: 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG 399
RVHF+ PYL A D+ V +S+ E F + +EAMA PV+ T G
Sbjct: 247 RVHFLGFQSNPYPYLKAADLFVLSSRY--EGFPNVLLEAMALGTPVV-------ATDCPG 297
Query: 400 TTEIVVNGTTGLLHPVGKEGI-TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 454
EI+ +G GLL PVG E A ++ L E R + ERV + +
Sbjct: 298 PREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYSK 353
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. Length = 353 |
| >gnl|CDD|100002 cd04962, GT1_like_5, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 325 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384
S + +QD V F+ K V L+ D+ + S+ E FG +EAMA +P
Sbjct: 239 RSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEK--ESFGLAALEAMACGVP 296
Query: 385 VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444
V+ + AGG E+V +G TG L VG + +A+ + L E +
Sbjct: 297 VV-------ASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAA 347
Query: 445 YERVKEIFQEHHMAERI 461
R E F +ERI
Sbjct: 348 RNRAAERFD----SERI 360
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes. Length = 371 |
| >gnl|CDD|99969 cd03795, GT1_like_4, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 305 EVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLV 361
+P VI+G + E+EL + DRV F+ + A LAA DV V
Sbjct: 215 ALPDAPLVIVGEGPL------EAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFV 268
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGTTEIVVNGTTGLLHPVGKEGI 420
S E FG + +EAMAF PV+ T G + + ++G TGL+ P G
Sbjct: 269 FPSVERSEAFGIVLLEAMAFGKPVI-------STEIGTGGSYVNLHGVTGLVVPPGDPA- 320
Query: 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 458
LA+ I +L E R +G+ ER +E F M
Sbjct: 321 -ALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes. Length = 357 |
| >gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R +RE LG+ + L I+ + K L + L+ +K P+ +++G
Sbjct: 180 RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAA----ALLLKK---FPNARLLLVGD 232
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376
+ + E + ++D+V + + V L A+DV V +S + E F + +
Sbjct: 233 GPD-RANLELLALK---ELGLEDKVILLGERSDVPALLNALDVFVLSSLS--EGFPNVLL 286
Query: 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVE 435
EAMA LPV+ T G E+V + TG L P G E LA+ I L
Sbjct: 287 EAMACGLPVV-------ATDVGDNAELVGD--TGFLVPPGDPEA---LAEAIEALLADPA 334
Query: 436 RRLTMGKRGYERVKEIFQEHHMAER 460
R +G+ ER++E F M E
Sbjct: 335 LRQALGEAARERIEENFSIEAMVEA 359
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. Length = 365 |
| >gnl|CDD|234438 TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 326 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385
S V + + DRV F+ K VA L+ D+ + S+ E FG +EAMA +PV
Sbjct: 242 SPAEQLVRELGLTDRVLFLGKQDDVAELLSISDLFLLPSEK--ESFGLAALEAMACGVPV 299
Query: 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 445
+ + AGG E+V +G TG L VG + +A+ + L E
Sbjct: 300 I-------ASNAGGIPEVVEHGVTGFLCDVGD--VETMAEYAISLLEDEELLQRFSAAAR 350
Query: 446 ERVKEIFQEHHMAERIAVVLKEVL 469
ER KE F + + + + +L
Sbjct: 351 ERAKERFDSEKIVPQYEALYRRLL 374
|
Members of this protein family are BshA, a glycosyltransferase required for bacillithiol biosynthesis. This enzyme combines UDP-GlcNAc and L-malate to form N-acetyl-alpha-D-glucosaminyl L-malate synthase. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 374 |
| >gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-13
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL + ++ + + + KL I+G L + + ++DRV
Sbjct: 191 KGFDLLIEAWAKIAKKHPDWKL-------RIVGDG-----PEREALEALIKELGLEDRVI 238
Query: 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402
+ T + Y A + V S+ E F + +EAMAF LPV+ C G +E
Sbjct: 239 LLGFTKNIEEYYAKASIFVLTSRF--EGFPMVLLEAMAFGLPVISFDC------PTGPSE 290
Query: 403 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450
I+ +G GLL P G LA+ +++L E R MG E +
Sbjct: 291 IIEDGVNGLLVPNGDVEA--LAEALLRLMEDEELRKRMGANARESAER 336
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. Length = 348 |
| >gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-13
Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 28/178 (15%)
Query: 275 IINSVSRG---KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY 331
II V R KG DL L E+ L+KE+ P++ VI+G + E +L+
Sbjct: 4 IILFVGRLVPEKGLDLLL----EAFALLKEQH---PNLKLVIVGDG-----EEEKKLKKL 51
Query: 332 VMQKKIQDRVHFVN--KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389
++ ++D V FV + D+ V S+ E FG + +EAMA +PV+
Sbjct: 52 ALKLGLEDNVIFVGFVPDEDLIELYRIADLFVLPSRY--EGFGLVLLEAMAAGVPVIA-- 107
Query: 390 CLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447
T GG EIV +G TGLL G LA+ I KL E R +G+ +R
Sbjct: 108 -----TDVGGPAEIVKDGETGLLVDPGD--AEALAEAIEKLLKDEELRERLGENARKR 158
|
Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. Length = 158 |
| >gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 56/186 (30%), Positives = 77/186 (41%), Gaps = 28/186 (15%)
Query: 275 IINSVSR---GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG--SDMNAQTKFESELR 329
I +V R KG D + ++ E EL + L VI+G D E ELR
Sbjct: 222 RILAVGRLDPRKGIDTLIRAYAELPELRERANL-------VIVGGPRDDILAMD-EEELR 273
Query: 330 NYVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
+ + DRV F ++ + A DV V A E FG +EAMA LPV+
Sbjct: 274 ELARELGVIDRVDFP-GRVSREDLPALYRAADVFVN--PALYEPFGLTALEAMACGLPVV 330
Query: 387 LQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446
TA GG +IVV+G TGLL LA + +L T R + + G
Sbjct: 331 -------ATAVGGPRDIVVDGVTGLLVDPRDPEA--LAAALRRLLTDPALRRRLSRAGLR 381
Query: 447 RVKEIF 452
R + +
Sbjct: 382 RARARY 387
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. Length = 398 |
| >gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 61/269 (22%), Positives = 100/269 (37%), Gaps = 57/269 (21%)
Query: 224 RLRIKMPDTYVVHLGN-SKELMEVA-EDNVAK---------RVLREHVRESLGVRNEDLL 272
RL ++ D +V + L+ A + +A E ++ G+ +L
Sbjct: 129 RLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESLKALGGLDGRPVL 188
Query: 273 --FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330
F ++ KG +L L E+L L+ K P V ++ G ++ E
Sbjct: 189 LTFGLL---RPYKGLELLL----EALPLLVAK---HPDVRLLVAGETHPDLERYRGEAYA 238
Query: 331 YVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLV------QNSQ----AWGECFGRITIE 377
+ + DRV F+N+ L + +A DV+V +Q A+
Sbjct: 239 LAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAY---------- 288
Query: 378 AMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437
A+ F PV+ T G E V++G TGLL P G LA+ I +L E
Sbjct: 289 AIGFGKPVI-------STPVGHAEE-VLDGGTGLLVPPGDP--AALAEAIRRLLADPELA 338
Query: 438 LTMGKRGYERVKEIFQEHHMAERIAVVLK 466
+ R E + +AER +L
Sbjct: 339 QALRARAREYARA-MSWERVAERYLRLLA 366
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. Length = 366 |
| >gnl|CDD|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 29/167 (17%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL L E+ + + +E+ VI+G+ + + + + RV
Sbjct: 204 KGVDLLL----EAFKRLPRGDIEL-----VIVGNGLELEEESYEL--------EGDPRVE 246
Query: 343 FV--NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT 400
F+ + + A IDVLV S W E F + EA+A +PV+ + GG
Sbjct: 247 FLGAYPQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVI-------ASDIGGM 298
Query: 401 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447
E+V +G GLL P G LA + +L + +
Sbjct: 299 AELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLERLRAGIEPP 343
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). Length = 359 |
| >gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-10
Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 253 KRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312
+ V + R LG+ ++ + + +++ K D + +F L+ E P V V
Sbjct: 185 EPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLK-------EEPDVKLV 237
Query: 313 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-----NKTLTVAPYLAAIDVLVQNSQAW 367
I+G D EL + + DRV F + + Y A D+ V S
Sbjct: 238 IVG-DGPE----REELEELARELGLADRVIFTGFVPREE---LPDYYKAADLFVFASTT- 288
Query: 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 427
E G + +EAMA LPV+ A G ++V +G G L P G E LA+ +
Sbjct: 289 -ETQGLVLLEAMAAGLPVVAVD-------APGLPDLVADGENGFLFPPGDE---ALAEAL 337
Query: 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468
++L E R + K E + + A+++ + +EV
Sbjct: 338 LRLLQDPELRRRLSKNAEESAE----KFSFAKKVEKLYEEV 374
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. Length = 374 |
| >gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 32/189 (16%)
Query: 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDR 340
G+ Q L + E+ L+K++ P + +I+G + EL+ + D
Sbjct: 230 GRAQGL--DTLLEAAALLKDR----PDIRFLIVGDGPE------KEELKELAKALGL-DN 276
Query: 341 VHF---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT----IEAMAFQLPVLLQKCLYQ 393
V F V K + LAA DV + G F ++ E MA PVL
Sbjct: 277 VTFLGRVPKE-ELPELLAAADVGL-VPLKPGPAFEGVSPSKLFEYMAAGKPVL------- 327
Query: 394 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453
+ G + E+V GL+ P G LA I++L E R MG+ G V+E F
Sbjct: 328 ASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385
Query: 454 EHHMAERIA 462
+AER+
Sbjct: 386 REKLAERLL 394
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. Length = 394 |
| >gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 55/185 (29%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG D L E+L L+K++ ++ I+G EL + + ++DRV
Sbjct: 192 KGLDYLL----EALALLKDRGIDF---RLDIVGDG-----PLRDELEALIAELGLEDRVT 239
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWG----ECFGRITIEAMAFQLPVLLQKCLYQGT 395
++ V L A D+ V S E + +EAMA LPV+ T
Sbjct: 240 LLGAKSQE-EVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVI-------ST 291
Query: 396 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455
G E+V +G TGLL P G LA I +L E R MG+ G RV+E F
Sbjct: 292 DVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349
Query: 456 HMAER 460
A R
Sbjct: 350 KQAAR 354
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. Length = 355 |
| >gnl|CDD|100003 cd05844, GT1_like_7, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 22/164 (13%)
Query: 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363
VP V VIIG + L + RV F+ V + + +Q
Sbjct: 217 VPEVRLVIIG-----DGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQP 271
Query: 364 SQ--AWGEC--FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419
S G+ + +EA A +PV+ T GG E V +G TGLL P EG
Sbjct: 272 SVTAPSGDAEGLPVVLLEAQASGVPVV-------ATRHGGIPEAVEDGETGLLVP---EG 321
Query: 420 -ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462
+ LA + +L + R MG G RV+E F ++
Sbjct: 322 DVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 367 |
| >gnl|CDD|100000 cd04951, GT1_WbdM_like, This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 34/194 (17%)
Query: 255 VLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314
R +R +LGV+N+ + + + K L +F + L + KL +I
Sbjct: 173 ARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKL-------LIA 225
Query: 315 GSDMNAQTKFESELRNYVMQK----KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370
G + LR + + + +RV + +A Y A D+ V +S AW E
Sbjct: 226 G---------DGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSS-AW-EG 274
Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
FG + EAMA +LPV+ T AGG E+V G +GL+ P+ LA I ++
Sbjct: 275 FGLVVAEAMACELPVV-------ATDAGGVREVV--GDSGLIVPISD--PEALANKIDEI 323
Query: 431 ATH-VERRLTMGKR 443
E R +G R
Sbjct: 324 LKMSGEERDIIGAR 337
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria. Length = 360 |
| >gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-----NAQTKFESELRN 330
IN R K L + +F ++K+K E +V VI G N + E EL+
Sbjct: 217 INRFERKKNIALAIEAF----AILKDKLAEFKNVRLVIAGGYDPRVAENVEY-LE-ELQR 270
Query: 331 YVMQKK-IQDRVHF---VNKTLTVAPYLAAIDVLV--QNSQAWGECFGRITIEAMAFQLP 384
+ ++D+V F ++ + +A +L N E FG + +EAM P
Sbjct: 271 LAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSN-----EHFGIVPLEAMYAGKP 325
Query: 385 VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444
V+ +GG E VV+G TG L E A+ ++KLA + MG G
Sbjct: 326 VI-------ACNSGGPLETVVDGETGFLCEPTPEE---FAEAMLKLANDPDLADRMGAAG 375
Query: 445 YERVKEIFQEHHMAERI 461
+RVKE F AER+
Sbjct: 376 RKRVKEKFSTEAFAERL 392
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. Length = 392 |
| >gnl|CDD|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 36/210 (17%)
Query: 257 REHVRESLGVRNED---LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313
+ R+ LG+ D +LF + KG D + E+L+ + E+ + + V+
Sbjct: 178 KREARKRLGL-PADKKIILFGAVGGTDPRKGFDELI----EALKRLAERWKD--DIELVV 230
Query: 314 IGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNSQAWGEC 370
G+ + + + VH+ +N ++A +A DV V S E
Sbjct: 231 FGAS-DPEIPPDLPFP-----------VHYLGSLNDDESLALIYSAADVFVVPSLQ--EN 276
Query: 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430
F IEA+A PV+ GG +IV +G TG L G LA+ I L
Sbjct: 277 FPNTAIEALACGTPVV-------AFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWL 327
Query: 431 ATHVERRLTMGKRGYERVKEIFQEHHMAER 460
+ R +G+ E + F A+R
Sbjct: 328 LADPDEREELGEAARELAENEFDSRVQAKR 357
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. Length = 365 |
| >gnl|CDD|99985 cd03814, GT1_like_2, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 32/100 (32%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT 408
+A A+ DV V S+ E FG + +EAMA LPV+ AGG +IV +G
Sbjct: 259 ELAAAYASADVFVFPSRT--ETFGLVVLEAMASGLPVV-------APDAGGPADIVTDGE 309
Query: 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448
GLL G A + L E R M R
Sbjct: 310 NGLLVEPGDAE--AFAAALAALLADPELRRRMAARARAEA 347
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes. Length = 364 |
| >gnl|CDD|233748 TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 341 VHFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA 397
+ ++NK L + L+ +V V S E G + +EAMA PV+ +A
Sbjct: 262 IIWINKMLPKEELVELLSNAEVFVCPSIY--EPLGIVNLEAMACGTPVV-------ASAT 312
Query: 398 GGTTEIVVNGTTGLLHPVGKEGITP----LAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453
GG E+VV+G TG L P LAK I L E MG G +R +E F
Sbjct: 313 GGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFS 372
Query: 454 EHHMAERIAVVLKEVL 469
+A++ + ++VL
Sbjct: 373 WGSIAKKTVEMYRKVL 388
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 388 |
| >gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTT 409
V + A+D+ V S A E +EAMA LPV+ TA GG E+V +G T
Sbjct: 266 VPALMQALDLFVLPSLA--EGISNTILEAMASGLPVI-------ATAVGGNPELVQHGVT 316
Query: 410 GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469
G L P G LA+ + + R G G R ++ F + M A + ++L
Sbjct: 317 GALVPPGDA--VALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. Length = 374 |
| >gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 49/182 (26%), Positives = 70/182 (38%), Gaps = 26/182 (14%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
L ++ V N + +L + D +F + ++ KG D + +F
Sbjct: 70 AARLLGIPLVLTVHGVNRSLLEGVPLSLLALSIGLADKVF--VGRLAPEKGLDDLIEAF- 126
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV---NKTLTV 350
K P + VI G + E + DRV F+ + +
Sbjct: 127 ------ALLKERGPDLKLVIAGDGPEREYLEELLAALL-----LLDRVIFLGGLDPEELL 175
Query: 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTG 410
A LAA DV V S E FG + +EAMA LPV+ T GG EIV +G TG
Sbjct: 176 ALLLAAADVFVLPS--LREGFGLVVLEAMACGLPVI-------ATDVGGPPEIVEDGLTG 226
Query: 411 LL 412
LL
Sbjct: 227 LL 228
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 229 |
| >gnl|CDD|185381 PRK15484, PRK15484, lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 52/262 (19%)
Query: 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED- 270
V +++ K ER +P+ + + N L + + ++R+ L + ++
Sbjct: 145 VPSQFLKKFYEER----LPNADISIVPNGFCLETYQSNP------QPNLRQQLNISPDET 194
Query: 271 -LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR 329
LL+A +S KG L + +F + KL V++G + ++ +
Sbjct: 195 VLLYA--GRISPDKGILLLMQAFEKLATAHSNLKL-------VVVGDPTASSKGEKAAYQ 245
Query: 330 NYVMQ--KKIQDRVHFVNKTLTVAP-----YLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382
V++ K+I DR + P Y D++V SQ E F + +EAMA
Sbjct: 246 KKVLEAAKRIGDRCIMLG---GQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAG 301
Query: 383 LPVLLQKCLYQGTAAGGTTEIVVNGTTG--LLHPVGKEGITPLAKNIVKLATHVE----- 435
PVL GG TE V+ G TG L P+ + I +I + E
Sbjct: 302 KPVLAST-------KGGITEFVLEGITGYHLAEPMTSDSI---ISDINRTLADPELTQIA 351
Query: 436 ---RRLTMGKRGYERVKEIFQE 454
+ K +E V + F+E
Sbjct: 352 EQAKDFVFSKYSWEGVTQRFEE 373
|
Length = 380 |
| >gnl|CDD|99984 cd03813, GT1_like_3, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 32/187 (17%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
K F+ + + ++P +IG E E R V ++D V
Sbjct: 306 KDIKTFIRAAAIVRK-------KIPDAEGWVIGPTDEDPEYAE-ECRELVESLGLEDNVK 357
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG 399
F N V YL +DVLV S + E + +EAMA +PV+ T G
Sbjct: 358 FTGFQN----VKEYLPKLDVLVLTSIS--EGQPLVILEAMAAGIPVV-------ATDVGS 404
Query: 400 TTEIVVNGTTGLLHPVGKEGITP------LAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453
E++ L P G + P LA+ I++L E R MG+ G +RV+ +
Sbjct: 405 CRELIEGADDEALGPAG--EVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYT 462
Query: 454 EHHMAER 460
M +
Sbjct: 463 LERMIDS 469
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes. Length = 475 |
| >gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 35/186 (18%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
KG DL + +F + E P H VI G D + + +EL+ ++DRV
Sbjct: 216 KGLDLLIEAF----AKLAE---RFPDWHLVIAGPD---EGGYRAELKQIAAALGLEDRVT 265
Query: 343 F---VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL-QKCLYQG---T 395
F + A A D+ V S + E FG + EA+A PV+ K +Q
Sbjct: 266 FTGMLYGEDKAAALADA-DLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY 322
Query: 396 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455
G + V+ LA + + +R MG+ G V+E F
Sbjct: 323 GCGWVVDDDVDA---------------LAAALRRALELPQRLKAMGENGRALVEERFSWT 367
Query: 456 HMAERI 461
+A+++
Sbjct: 368 AIAQQL 373
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. Length = 375 |
| >gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales peptide system | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 39/225 (17%)
Query: 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307
E V R+ +R+ LG ++ + + + KG D + +F ++K+ P
Sbjct: 205 EAIYLSEVERKKLRKKLGFSEDEKIILFVGRLDEIKGVDYLIEAF---KIVLKKD----P 257
Query: 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNS 364
+ VI+G D + + KKI ++ F ++K Y A DV V S
Sbjct: 258 NCRLVIVG-DGDYSRYLQ-------ECKKIWSKITFTGKLDKEKLYELYQIA-DVGVLPS 308
Query: 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG----- 419
E + IE M LP++ GT + G +E++ +G G P+ +
Sbjct: 309 FH--EQCSYVAIEMMMHGLPLI-------GTTSTGLSEMIEDGLNGYKIPIKEYRDYVEL 359
Query: 420 -ITPLAKNIVKLATHVERRLTMGKRGYERVKE-----IFQEHHMA 458
L + ++KL + + MGK R E + +E+ +
Sbjct: 360 DKKELVQKLLKLLSSSDEAKQMGKNARRRYLEKYSLEVMRENMKS 404
|
Members of this protein family are predicted glycosyltransferases that occur in conserved gene neighborhoods in various members of the Bacteroidales. These neighborhoods feature a radical SAM enzyme predicted to act in peptide modification (family TIGR04148), peptides from family TIGR04149 with a characteristic GG cleavage motif, and several other proteins. Length = 406 |
| >gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 24/195 (12%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R R LG+ + + A + + K D+ L + E L+ ++ L V ++G
Sbjct: 206 RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVI-----VVGG 260
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHF---VNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373
+ L + I DRV F V Y AA DV+ S + E FG
Sbjct: 261 PSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAA-DVVAVPS--YNESFGL 317
Query: 374 ITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLA 431
+ +EA A PV+ GG V +G TGLL +G P A + +L
Sbjct: 318 VAMEAQACGTPVV-------AARVGGLPVAVADGETGLL----VDGHDPADWADALARLL 366
Query: 432 THVERRLTMGKRGYE 446
R+ MG E
Sbjct: 367 DDPRTRIRMGAAAVE 381
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. Length = 405 |
| >gnl|CDD|99966 cd03792, GT1_Trehalose_phosphorylase, Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 42/165 (25%), Positives = 62/165 (37%), Gaps = 25/165 (15%)
Query: 296 LELIKEKKLEVPSVHAVIIGS----DMNAQTKFESELRNYVMQKKIQDRVHFVN----KT 347
++ ++ K VP V++GS D +E E+ Y + +H +
Sbjct: 209 IDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYE-EVLEY---AEGDPDIHVLTLPPVSD 264
Query: 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407
L V A V++Q S E FG EA+ PV+ GG + +G
Sbjct: 265 LEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVI-------AGPVGGIPLQIEDG 315
Query: 408 TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452
TG L +E A I+ L E R MG E V+E F
Sbjct: 316 ETGFLVDTVEE----AAVRILYLLRDPELRRKMGANAREHVRENF 356
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. Length = 372 |
| >gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN---GTTGL 411
A+ DV V S++ E G + +EAMA +PV+ AGG +I+ G TG
Sbjct: 330 ASGDVFVMPSES--ETLGFVVLEAMASGVPVV-------AARAGGIPDIIPPDQEGKTGF 380
Query: 412 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450
L+ G + + + L E R MG E V++
Sbjct: 381 LYTPGD--VDDCVEKLETLLADPELRERMGAAAREEVEK 417
|
Length = 465 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| TIGR03088 | 374 | stp2 sugar transferase, PEP-CTERM/EpsH1 system ass | 100.0 | |
| PLN02871 | 465 | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | 100.0 | |
| cd03796 | 398 | GT1_PIG-A_like This family is most closely related | 100.0 | |
| PRK14099 | 485 | glycogen synthase; Provisional | 100.0 | |
| PLN02316 | 1036 | synthase/transferase | 100.0 | |
| PRK00654 | 466 | glgA glycogen synthase; Provisional | 100.0 | |
| TIGR03449 | 405 | mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino | 100.0 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| PLN02939 | 977 | transferase, transferring glycosyl groups | 100.0 | |
| PRK15427 | 406 | colanic acid biosynthesis glycosyltransferase WcaL | 100.0 | |
| PRK10307 | 412 | putative glycosyl transferase; Provisional | 100.0 | |
| TIGR02472 | 439 | sucr_P_syn_N sucrose-phosphate synthase, putative, | 100.0 | |
| cd04962 | 371 | GT1_like_5 This family is most closely related to | 100.0 | |
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 100.0 | |
| TIGR02095 | 473 | glgA glycogen/starch synthases, ADP-glucose type. | 100.0 | |
| TIGR02149 | 388 | glgA_Coryne glycogen synthase, Corynebacterium fam | 100.0 | |
| PRK14098 | 489 | glycogen synthase; Provisional | 100.0 | |
| PRK15484 | 380 | lipopolysaccharide 1,2-N-acetylglucosaminetransfer | 100.0 | |
| cd04951 | 360 | GT1_WbdM_like This family is most closely related | 100.0 | |
| cd03792 | 372 | GT1_Trehalose_phosphorylase Trehalose phosphorylas | 100.0 | |
| cd03805 | 392 | GT1_ALG2_like This family is most closely related | 100.0 | |
| cd03819 | 355 | GT1_WavL_like This family is most closely related | 100.0 | |
| TIGR02468 | 1050 | sucrsPsyn_pln sucrose phosphate synthase/possible | 100.0 | |
| cd03807 | 365 | GT1_WbnK_like This family is most closely related | 100.0 | |
| cd03791 | 476 | GT1_Glycogen_synthase_DULL1_like This family is mo | 100.0 | |
| TIGR02470 | 784 | sucr_synth sucrose synthase. This model represents | 100.0 | |
| cd03818 | 396 | GT1_ExpC_like This family is most closely related | 100.0 | |
| PRK09922 | 359 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D | 100.0 | |
| cd03812 | 358 | GT1_CapH_like This family is most closely related | 100.0 | |
| cd05844 | 367 | GT1_like_7 Glycosyltransferases catalyze the trans | 100.0 | |
| KOG1111 | 426 | consensus N-acetylglucosaminyltransferase complex, | 100.0 | |
| cd03800 | 398 | GT1_Sucrose_synthase This family is most closely r | 100.0 | |
| PLN02949 | 463 | transferase, transferring glycosyl groups | 100.0 | |
| cd03799 | 355 | GT1_amsK_like This is a family of GT1 glycosyltran | 100.0 | |
| cd03825 | 365 | GT1_wcfI_like This family is most closely related | 100.0 | |
| cd03822 | 366 | GT1_ecORF704_like This family is most closely rela | 100.0 | |
| PLN02846 | 462 | digalactosyldiacylglycerol synthase | 100.0 | |
| cd03795 | 357 | GT1_like_4 This family is most closely related to | 100.0 | |
| PLN00142 | 815 | sucrose synthase | 100.0 | |
| PRK10125 | 405 | putative glycosyl transferase; Provisional | 100.0 | |
| cd03802 | 335 | GT1_AviGT4_like This family is most closely relate | 100.0 | |
| cd03821 | 375 | GT1_Bme6_like This family is most closely related | 100.0 | |
| cd03820 | 348 | GT1_amsD_like This family is most closely related | 100.0 | |
| cd03813 | 475 | GT1_like_3 This family is most closely related to | 100.0 | |
| cd03806 | 419 | GT1_ALG11_like This family is most closely related | 100.0 | |
| cd03814 | 364 | GT1_like_2 This family is most closely related to | 100.0 | |
| cd03816 | 415 | GT1_ALG1_like This family is most closely related | 100.0 | |
| cd04955 | 363 | GT1_like_6 This family is most closely related to | 100.0 | |
| cd03808 | 359 | GT1_cap1E_like This family is most closely related | 100.0 | |
| cd03817 | 374 | GT1_UGDG_like This family is most closely related | 100.0 | |
| cd03801 | 374 | GT1_YqgM_like This family is most closely related | 100.0 | |
| TIGR03087 | 397 | stp1 sugar transferase, PEP-CTERM/EpsH1 system ass | 100.0 | |
| cd03811 | 353 | GT1_WabH_like This family is most closely related | 100.0 | |
| cd03823 | 359 | GT1_ExpE7_like This family is most closely related | 100.0 | |
| cd03809 | 365 | GT1_mtfB_like This family is most closely related | 100.0 | |
| cd03794 | 394 | GT1_wbuB_like This family is most closely related | 100.0 | |
| cd03798 | 377 | GT1_wlbH_like This family is most closely related | 100.0 | |
| TIGR02918 | 500 | accessory Sec system glycosylation protein GtfA. M | 100.0 | |
| cd04946 | 407 | GT1_AmsK_like This family is most closely related | 100.0 | |
| PLN02501 | 794 | digalactosyldiacylglycerol synthase | 100.0 | |
| KOG0853 | 495 | consensus Glycosyltransferase [Cell wall/membrane/ | 100.0 | |
| PHA01630 | 331 | putative group 1 glycosyl transferase | 100.0 | |
| cd03804 | 351 | GT1_wbaZ_like This family is most closely related | 100.0 | |
| cd04949 | 372 | GT1_gtfA_like This family is most closely related | 100.0 | |
| PLN02275 | 371 | transferase, transferring glycosyl groups | 99.98 | |
| PHA01633 | 335 | putative glycosyl transferase group 1 | 99.98 | |
| COG0297 | 487 | GlgA Glycogen synthase [Carbohydrate transport and | 99.97 | |
| PRK00726 | 357 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.97 | |
| PRK05749 | 425 | 3-deoxy-D-manno-octulosonic-acid transferase; Revi | 99.97 | |
| TIGR02400 | 456 | trehalose_OtsA alpha,alpha-trehalose-phosphate syn | 99.96 | |
| cd03788 | 460 | GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a | 99.96 | |
| cd03785 | 350 | GT1_MurG MurG is an N-acetylglucosaminyltransferas | 99.96 | |
| PRK13609 | 380 | diacylglycerol glucosyltransferase; Provisional | 99.96 | |
| TIGR01133 | 348 | murG undecaprenyldiphospho-muramoylpentapeptide be | 99.96 | |
| cd03793 | 590 | GT1_Glycogen_synthase_GSY2_like Glycogen synthase, | 99.95 | |
| PF00534 | 172 | Glycos_transf_1: Glycosyl transferases group 1; In | 99.95 | |
| PLN02605 | 382 | monogalactosyldiacylglycerol synthase | 99.94 | |
| PLN03063 | 797 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.94 | |
| PRK13608 | 391 | diacylglycerol glucosyltransferase; Provisional | 99.94 | |
| PRK14501 | 726 | putative bifunctional trehalose-6-phosphate syntha | 99.93 | |
| cd01635 | 229 | Glycosyltransferase_GTB_type Glycosyltransferases | 99.91 | |
| cd04950 | 373 | GT1_like_1 Glycosyltransferases catalyze the trans | 99.91 | |
| KOG1387 | 465 | consensus Glycosyltransferase [Cell wall/membrane/ | 99.9 | |
| TIGR02398 | 487 | gluc_glyc_Psyn glucosylglycerol-phosphate synthase | 99.9 | |
| PRK00025 | 380 | lpxB lipid-A-disaccharide synthase; Reviewed | 99.89 | |
| TIGR00236 | 365 | wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras | 99.87 | |
| COG0438 | 381 | RfaG Glycosyltransferase [Cell envelope biogenesis | 99.86 | |
| cd03786 | 363 | GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th | 99.86 | |
| PRK09814 | 333 | beta-1,6-galactofuranosyltransferase; Provisional | 99.85 | |
| PLN03064 | 934 | alpha,alpha-trehalose-phosphate synthase (UDP-form | 99.83 | |
| TIGR00215 | 385 | lpxB lipid-A-disaccharide synthase. Lipid-A precur | 99.8 | |
| KOG2941 | 444 | consensus Beta-1,4-mannosyltransferase [Posttransl | 99.79 | |
| TIGR03713 | 519 | acc_sec_asp1 accessory Sec system protein Asp1. Th | 99.79 | |
| TIGR02094 | 601 | more_P_ylases alpha-glucan phosphorylases. This fa | 99.77 | |
| PF13692 | 135 | Glyco_trans_1_4: Glycosyl transferases group 1; PD | 99.74 | |
| PRK12446 | 352 | undecaprenyldiphospho-muramoylpentapeptide beta-N- | 99.67 | |
| COG0707 | 357 | MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami | 99.66 | |
| cd04299 | 778 | GT1_Glycogen_Phosphorylase_like This family is mos | 99.64 | |
| PF00982 | 474 | Glyco_transf_20: Glycosyltransferase family 20; In | 99.61 | |
| PF05693 | 633 | Glycogen_syn: Glycogen synthase; InterPro: IPR0086 | 99.57 | |
| PRK10117 | 474 | trehalose-6-phosphate synthase; Provisional | 99.57 | |
| PF13524 | 92 | Glyco_trans_1_2: Glycosyl transferases group 1 | 99.51 | |
| PLN02205 | 854 | alpha,alpha-trehalose-phosphate synthase [UDP-form | 99.49 | |
| TIGR02919 | 438 | accessory Sec system glycosyltransferase GtfB. Mem | 99.48 | |
| COG0380 | 486 | OtsA Trehalose-6-phosphate synthase [Carbohydrate | 99.44 | |
| TIGR03590 | 279 | PseG pseudaminic acid biosynthesis-associated prot | 99.43 | |
| COG1519 | 419 | KdtA 3-deoxy-D-manno-octulosonic-acid transferase | 99.42 | |
| PF13439 | 177 | Glyco_transf_4: Glycosyltransferase Family 4; PDB: | 99.41 | |
| TIGR03492 | 396 | conserved hypothetical protein. This protein famil | 99.35 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 99.32 | |
| PF13844 | 468 | Glyco_transf_41: Glycosyl transferase family 41; P | 99.29 | |
| PF02684 | 373 | LpxB: Lipid-A-disaccharide synthetase; InterPro: I | 99.27 | |
| cd03784 | 401 | GT1_Gtf_like This family includes the Gtfs, a grou | 99.25 | |
| TIGR03568 | 365 | NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, | 99.21 | |
| PF13528 | 318 | Glyco_trans_1_3: Glycosyl transferase family 1 | 99.19 | |
| COG0763 | 381 | LpxB Lipid A disaccharide synthetase [Cell envelop | 99.16 | |
| PF04007 | 335 | DUF354: Protein of unknown function (DUF354); Inte | 99.14 | |
| TIGR01426 | 392 | MGT glycosyltransferase, MGT family. This model de | 99.05 | |
| COG0381 | 383 | WecB UDP-N-acetylglucosamine 2-epimerase [Cell env | 99.0 | |
| PF13579 | 160 | Glyco_trans_4_4: Glycosyl transferase 4-like domai | 99.0 | |
| PRK01021 | 608 | lpxB lipid-A-disaccharide synthase; Reviewed | 98.98 | |
| COG3980 | 318 | spsG Spore coat polysaccharide biosynthesis protei | 98.82 | |
| TIGR00661 | 321 | MJ1255 conserved hypothetical protein. This model | 98.81 | |
| PF09314 | 185 | DUF1972: Domain of unknown function (DUF1972); Int | 98.75 | |
| COG1819 | 406 | Glycosyl transferases, related to UDP-glucuronosyl | 98.69 | |
| PF04464 | 369 | Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate | 98.67 | |
| COG4641 | 373 | Uncharacterized protein conserved in bacteria [Fun | 98.63 | |
| PRK14089 | 347 | ipid-A-disaccharide synthase; Provisional | 98.57 | |
| PRK02797 | 322 | 4-alpha-L-fucosyltransferase; Provisional | 98.54 | |
| PF02350 | 346 | Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; | 98.51 | |
| COG1817 | 346 | Uncharacterized protein conserved in archaea [Func | 98.49 | |
| PF07429 | 360 | Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc | 98.39 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.36 | |
| PF13477 | 139 | Glyco_trans_4_2: Glycosyl transferase 4-like | 98.24 | |
| PRK10017 | 426 | colanic acid biosynthesis protein; Provisional | 98.13 | |
| PF04101 | 167 | Glyco_tran_28_C: Glycosyltransferase family 28 C-t | 98.12 | |
| COG4671 | 400 | Predicted glycosyl transferase [General function p | 98.08 | |
| KOG3742 | 692 | consensus Glycogen synthase [Carbohydrate transpor | 98.03 | |
| COG0058 | 750 | GlgP Glucan phosphorylase [Carbohydrate transport | 97.93 | |
| PHA03392 | 507 | egt ecdysteroid UDP-glucosyltransferase; Provision | 97.9 | |
| PF08323 | 245 | Glyco_transf_5: Starch synthase catalytic domain; | 97.86 | |
| PRK14986 | 815 | glycogen phosphorylase; Provisional | 97.46 | |
| TIGR02093 | 794 | P_ylase glycogen/starch/alpha-glucan phosphorylase | 97.34 | |
| cd04300 | 797 | GT1_Glycogen_Phosphorylase This is a family of oli | 97.25 | |
| KOG1050 | 732 | consensus Trehalose-6-phosphate synthase component | 97.21 | |
| PF00343 | 713 | Phosphorylase: Carbohydrate phosphorylase; InterPr | 97.18 | |
| PF00201 | 500 | UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera | 96.95 | |
| PLN02448 | 459 | UDP-glycosyltransferase family protein | 96.88 | |
| PLN02670 | 472 | transferase, transferring glycosyl groups | 96.84 | |
| PRK14985 | 798 | maltodextrin phosphorylase; Provisional | 96.84 | |
| PF11440 | 355 | AGT: DNA alpha-glucosyltransferase; InterPro: IPR0 | 96.74 | |
| COG0859 | 334 | RfaF ADP-heptose:LPS heptosyltransferase [Cell env | 96.59 | |
| PLN02410 | 451 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 96.56 | |
| PF15024 | 559 | Glyco_transf_18: Glycosyltransferase family 18 | 96.48 | |
| PLN03004 | 451 | UDP-glycosyltransferase | 96.44 | |
| PLN03007 | 482 | UDP-glucosyltransferase family protein | 96.41 | |
| PLN00414 | 446 | glycosyltransferase family protein | 96.37 | |
| PLN02764 | 453 | glycosyltransferase family protein | 96.32 | |
| PLN02863 | 477 | UDP-glucoronosyl/UDP-glucosyl transferase family p | 96.24 | |
| PLN02562 | 448 | UDP-glycosyltransferase | 96.23 | |
| PLN02208 | 442 | glycosyltransferase family protein | 96.18 | |
| PLN02210 | 456 | UDP-glucosyl transferase | 96.13 | |
| COG3660 | 329 | Predicted nucleoside-diphosphate-sugar epimerase [ | 95.94 | |
| PLN02173 | 449 | UDP-glucosyl transferase family protein | 95.9 | |
| TIGR03609 | 298 | S_layer_CsaB polysaccharide pyruvyl transferase Cs | 95.8 | |
| PLN02555 | 480 | limonoid glucosyltransferase | 95.78 | |
| PLN02167 | 475 | UDP-glycosyltransferase family protein | 95.75 | |
| PF06258 | 311 | Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP | 95.73 | |
| PLN02554 | 481 | UDP-glycosyltransferase family protein | 95.73 | |
| PLN02992 | 481 | coniferyl-alcohol glucosyltransferase | 95.61 | |
| PLN02152 | 455 | indole-3-acetate beta-glucosyltransferase | 95.31 | |
| PF12000 | 171 | Glyco_trans_4_3: Gkycosyl transferase family 4 gro | 95.2 | |
| PF05159 | 269 | Capsule_synth: Capsule polysaccharide biosynthesis | 95.17 | |
| PF12038 | 168 | DUF3524: Domain of unknown function (DUF3524); Int | 95.14 | |
| TIGR02195 | 334 | heptsyl_trn_II lipopolysaccharide heptosyltransfer | 95.14 | |
| cd03789 | 279 | GT1_LPS_heptosyltransferase Lipopolysaccharide hep | 94.84 | |
| PLN02207 | 468 | UDP-glycosyltransferase | 94.78 | |
| TIGR02193 | 319 | heptsyl_trn_I lipopolysaccharide heptosyltransfera | 94.35 | |
| PRK10964 | 322 | ADP-heptose:LPS heptosyl transferase I; Provisiona | 94.35 | |
| PLN00164 | 480 | glucosyltransferase; Provisional | 94.0 | |
| PF01075 | 247 | Glyco_transf_9: Glycosyltransferase family 9 (hept | 93.77 | |
| PLN02534 | 491 | UDP-glycosyltransferase | 93.55 | |
| PRK10916 | 348 | ADP-heptose:LPS heptosyltransferase II; Provisiona | 93.44 | |
| PRK10422 | 352 | lipopolysaccharide core biosynthesis protein; Prov | 93.41 | |
| KOG1192 | 496 | consensus UDP-glucuronosyl and UDP-glucosyl transf | 92.75 | |
| PF04230 | 286 | PS_pyruv_trans: Polysaccharide pyruvyl transferase | 92.57 | |
| TIGR02201 | 344 | heptsyl_trn_III lipopolysaccharide heptosyltransfe | 92.44 | |
| COG2327 | 385 | WcaK Polysaccharide pyruvyl transferase family pro | 91.88 | |
| PF06925 | 169 | MGDG_synth: Monogalactosyldiacylglycerol (MGDG) sy | 91.48 | |
| PF08288 | 90 | PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP | 89.4 | |
| PF04413 | 186 | Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid | 89.31 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 89.24 | |
| PRK09739 | 199 | hypothetical protein; Provisional | 89.02 | |
| PLN03015 | 470 | UDP-glucosyl transferase | 88.18 | |
| PF03033 | 139 | Glyco_transf_28: Glycosyltransferase family 28 N-t | 88.15 | |
| PF03853 | 169 | YjeF_N: YjeF-related protein N-terminus; InterPro: | 87.97 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 86.09 | |
| KOG1021 | 464 | consensus Acetylglucosaminyltransferase EXT1/exost | 84.38 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 84.11 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 83.04 | |
| PRK06988 | 312 | putative formyltransferase; Provisional | 82.95 | |
| KOG3349 | 170 | consensus Predicted glycosyltransferase [General f | 82.11 | |
| PF03016 | 302 | Exostosin: Exostosin family; InterPro: IPR004263 H | 81.85 | |
| PRK05647 | 200 | purN phosphoribosylglycinamide formyltransferase; | 81.69 | |
| cd03146 | 212 | GAT1_Peptidase_E Type 1 glutamine amidotransferase | 81.63 |
| >TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=355.77 Aligned_cols=354 Identities=18% Similarity=0.225 Sum_probs=274.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------hh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QE 143 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----------~~ 143 (477)
.+|+++.+.+..||+++++.+++++|.+.|+++++++..... .+.......|+.++.+.. ..
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-------AFRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-------hhHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 579999999999999999999999999999999888854322 234445556776654432 13
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc-----cchhh-Hhh-cccccccceeeehhhHHH
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLD-YVK-HLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-----~~~~~-~~~-~~~~~~~~~~~s~~~~~~ 216 (477)
.+.+..+||+||+|+.............+.+ ..+++.|..... .+... ..+ .....+.+++.|....++
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~----~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~ 150 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGVP----ARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW 150 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCCC----eEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH
Confidence 4456689999999975433222222222221 123333332111 01111 111 223567778888777776
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+.+ .++++..++.+|+||+|.+.|.+.... +...++....++++++|+++||+.+.||++.+++|+.++.
T Consensus 151 ~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 151 LRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 554 567777899999999999887654321 1222333444567899999999999999999999999987
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
+..++ ..++++|+++|+| +..+++++.++++++.+++.|+|+.+++..+|+.||++|+||. .||||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDG-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCC-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 63221 1247999999998 6778899999999999999999999999999999999999999 999999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
|||+||+||| +++.||..|++.++.+|++++++| +++++++|.+++++++.+.++++++++.+.++|||+.
T Consensus 291 EAma~G~Pvv-------~s~~~g~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 291 EAMASGLPVI-------ATAVGGNPELVQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHcCCCEE-------EcCCCCcHHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999 999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011779 457 MAERIAVVLKEV 468 (477)
Q Consensus 457 ~~~~~~~~~~~~ 468 (477)
+++++.++|+++
T Consensus 362 ~~~~~~~~y~~~ 373 (374)
T TIGR03088 362 MVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=353.48 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=264.5
Q ss_pred CCCccEEEEEeccC---CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-----Eec---
Q 011779 71 FMKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISA--- 139 (477)
Q Consensus 71 ~~~~~~Il~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-----~~~--- 139 (477)
.+++|||+++.... ..||++.++.+++++|.++||+|+|++...+........... ......... ...
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~ 133 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVI-GSWSFPCPFYQKVPLSLALS 133 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceee-ccCCcCCccCCCceeeccCC
Confidence 37889999997543 239999999999999999999999999654431110000000 000000000 001
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh------------hHhhcccccccce
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------------DYVKHLPLVAGAM 207 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------------~~~~~~~~~~~~~ 207 (477)
.....+.+..+||+||+|++....+........ ...|++.+.|+....+... .....++..+.++
T Consensus 134 ~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~---~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii 210 (465)
T PLN02871 134 PRIISEVARFKPDLIHASSPGIMVFGALFYAKL---LCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTL 210 (465)
T ss_pred HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH---hCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEE
Confidence 112345566899999999865433332222221 1246777788643221110 0122335677888
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhC-CCCCCeEEEEEeecccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~il~vGrl~~~Kg~~ 286 (477)
+.|....+.+.+ ....+.+++.+||||+|.+.|.+.... ...+.++. .++++++|+++||+.+.||++
T Consensus 211 ~~S~~~~~~l~~----~~~~~~~kv~vi~nGvd~~~f~p~~~~-------~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~ 279 (465)
T PLN02871 211 VTSPALGKELEA----AGVTAANRIRVWNKGVDSESFHPRFRS-------EEMRARLSGGEPEKPLIVYVGRLGAEKNLD 279 (465)
T ss_pred ECCHHHHHHHHH----cCCCCcCeEEEeCCccCccccCCcccc-------HHHHHHhcCCCCCCeEEEEeCCCchhhhHH
Confidence 888877776654 223456789999999999988654321 33455553 335678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.++++++++ ++++|+|+|+| ++.+++++++++ .+|+|+|++ +++..+|+.||++|+||
T Consensus 280 ~li~a~~~~-----------~~~~l~ivG~G-----~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 280 FLKRVMERL-----------PGARLAFVGDG-----PYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred HHHHHHHhC-----------CCcEEEEEeCC-----hHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 999998765 78999999999 788888888774 379999997 78999999999999999
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec---CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
. .|+||++++|||++|+||| +++.||+.|++.+ +.+|++++++| +++++++|.++++|++.+++|+
T Consensus 340 ~--~E~~g~~vlEAmA~G~PVI-------~s~~gg~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 340 E--SETLGFVVLEAMASGVPVV-------AARAGGIPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred c--ccccCcHHHHHHHcCCCEE-------EcCCCCcHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHH
Confidence 9 9999999999999999999 9999999999998 99999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH-HHHHHHhhh
Q 011779 442 KRGYERVKEIFQEHHMAERIAV-VLKEVLKKS 472 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~-~~~~~~~~~ 472 (477)
+++++.+ ++|||+.+++++++ .|++++...
T Consensus 409 ~~a~~~~-~~fsw~~~a~~l~~~~Y~~~~~~~ 439 (465)
T PLN02871 409 AAAREEV-EKWDWRAATRKLRNEQYSAAIWFW 439 (465)
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 57999999999998 799987643
|
|
| >cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=347.99 Aligned_cols=344 Identities=18% Similarity=0.157 Sum_probs=264.7
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------- 140 (477)
||+++++.+.| ||.++++..++++|.++||+|+|++...+... .......|+.++..+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~-------~~~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRV-------GIRYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCC-------CcccccCceeEEEecceeccCCccccch
Confidence 68999987766 88899999999999999999999996543211 011112344443221
Q ss_pred -----chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceee
Q 011779 141 -----GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~ 209 (477)
..+......+||+||+|+.............+. ...+++++.|+..+.. ........++.++.+++.
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~--~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 151 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHART--MGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICV 151 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhh--cCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEe
Confidence 123444567999999998654432222222221 2257788888753211 111122234677888888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|....+.+.. ..+++..++.+||||+|.+.|.+.... .++++++|+++||+.++||++.++
T Consensus 152 s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li 212 (398)
T cd03796 152 SHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLV 212 (398)
T ss_pred cHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHH
Confidence 8877665432 345677889999999999887654321 135778999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~ 367 (477)
+|+..+.+ +.++++|+|+|+| +..+.++++++++++.++|.|+|+. +++..+|+.||++++||.
T Consensus 213 ~a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~-- 278 (398)
T cd03796 213 GIIPEICK-------KHPNVRFIIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL-- 278 (398)
T ss_pred HHHHHHHh-------hCCCEEEEEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--
Confidence 99998876 5689999999998 6788899999999999999999985 789999999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
.|+||++++|||+||+||| +++.||..|++.++ .+++++ .| .++++++|.++++++.....+++++++.
T Consensus 279 ~E~~g~~~~EAma~G~PVI-------~s~~gg~~e~i~~~-~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 347 (398)
T cd03796 279 TEAFCIAIVEAASCGLLVV-------STRVGGIPEVLPPD-MILLAE-PD--VESIVRKLEEAISILRTGKHDPWSFHNR 347 (398)
T ss_pred hhccCHHHHHHHHcCCCEE-------ECCCCCchhheeCC-ceeecC-CC--HHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 9999999999999999999 99999999999775 344444 46 8999999999999877777788999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 448 VKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 448 ~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
+.++|||+.+++++.++|+++++..
T Consensus 348 ~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 348 VKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998654
|
Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder. |
| >PRK14099 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=349.27 Aligned_cols=371 Identities=18% Similarity=0.190 Sum_probs=274.2
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh-----hhhh---------hhhcC
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS-----LEHK---------MWDRG 133 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-----~~~~---------~~~~g 133 (477)
|++|||+|++.+..| ||..-++..|.++|+++||+|.|+.+..+......... +... ....|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 577999999988666 99999999999999999999999998765542110000 0000 00123
Q ss_pred cEEEec--------cc--------------h-h---------hHH----HhcCCcEEEEcCcchhhHHHHHhhhCCCccc
Q 011779 134 VQVISA--------KG--------------Q-E---------TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (477)
Q Consensus 134 ~~v~~~--------~~--------------~-~---------~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (477)
+.++.+ .. . + .+. ...+|||||+|....+.....+..... ..
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~--~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGR--PA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCC--CC
Confidence 333211 00 0 0 000 135899999998655543322221111 22
Q ss_pred cceeeeeeeccccc-chh-------------------------hHhhcccccccceeeehhhHHHHHHHh-----Hhhhc
Q 011779 178 PNVLWWIHEMRGHY-FKL-------------------------DYVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLR 226 (477)
Q Consensus 178 ~~~i~~~h~~~~~~-~~~-------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~ 226 (477)
.+.+.++|+..... +.. ..+..+..++.++++|...++.+.+.. ...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 57889999864211 100 012234678888999999888776421 11223
Q ss_pred cCCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHH
Q 011779 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
....++.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3567899999999999988754321 12233567889999974 4688999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE-EEccccCCHHHHH-HhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYL-AAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v-~~~g~~~~l~~~~-~~aDv~v~pS~~~~E~~ 371 (477)
++.+ .+++|+|+|+|.. ++++.+++++++++ +++ .|+|+.+++..+| +.||+||+||. +|+|
T Consensus 319 ~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~f 382 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPC 382 (485)
T ss_pred HHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCC
Confidence 8865 5789999999842 36788888888764 455 7999988899987 57999999999 9999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHH---HHhCHHHHHH
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVK---LATHVERRLT 439 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~---ll~~~~~~~~ 439 (477)
|++++|||+||+|+| ++++||+.|+|.++ .+|++++++| +++++++|.+ +++|++.+++
T Consensus 383 Gl~~lEAma~G~ppV-------vs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai~~a~~l~~d~~~~~~ 453 (485)
T PRK14099 383 GLTQLCALRYGAVPV-------VARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAALRKTAALFADPVAWRR 453 (485)
T ss_pred cHHHHHHHHCCCCcE-------EeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999 99999999999875 5899999998 9999999997 6779999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 440 MGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 440 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++++++ +.|||++++++|+++|+++++..
T Consensus 454 l~~~~~~---~~fSw~~~a~~y~~lY~~l~~~~ 483 (485)
T PRK14099 454 LQRNGMT---TDVSWRNPAQHYAALYRSLVAER 483 (485)
T ss_pred HHHHhhh---hcCChHHHHHHHHHHHHHHHhhh
Confidence 9999863 67999999999999999998643
|
|
| >PLN02316 synthase/transferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=361.24 Aligned_cols=369 Identities=15% Similarity=0.137 Sum_probs=276.4
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhh--h------------hhhcC
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--K------------MWDRG 133 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~--~------------~~~~g 133 (477)
..+|+|++++.+..| ||...++..|+++|+++||+|.|+++..+.........+.. . ....|
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 356999999987666 89999999999999999999999998765421110000000 0 01124
Q ss_pred cEEEeccch----------------h----------hHH--HhcCCcEEEEcCcchhhHHHHHhhhCC---Cccccceee
Q 011779 134 VQVISAKGQ----------------E----------TIN--TALKADLIVLNTAVAGKWLDAVLKEDV---PRVLPNVLW 182 (477)
Q Consensus 134 ~~v~~~~~~----------------~----------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 182 (477)
+.++.+... . .+. ...+|||||+|....+.... +++... .....+++.
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~-llk~~~~~~~~~~~p~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAW-LFKDHYAHYGLSKARVVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHH-HHHHhhhhhccCCCCEEE
Confidence 444322210 0 111 12589999999854443222 222211 112257899
Q ss_pred eeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc--CCCCeEEEecCCchhhhhhhhhh----------
Q 011779 183 WIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI--KMPDTYVVHLGNSKELMEVAEDN---------- 250 (477)
Q Consensus 183 ~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~vi~ngvd~~~~~~~~~~---------- 250 (477)
++|+... ........+..++.++++|...+..+.. ...+ ...++.+|+||||.+.|.|..++
T Consensus 744 TiHnl~~--~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~ 817 (1036)
T PLN02316 744 TIHNLEF--GANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSEN 817 (1036)
T ss_pred EeCCccc--chhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchh
Confidence 9997632 1122334567889999999998877654 2222 34789999999999988765321
Q ss_pred --HHHHHHHHHHHHhhCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHH
Q 011779 251 --VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 251 --~~~~~~~~~~r~~~~~~~-~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 327 (477)
..+...+..+++++|++. +.++|+++|||.++||++.|++|+.++.+ ++++|+|+|+|+. .++++.
T Consensus 818 ~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~ 886 (1036)
T PLN02316 818 VVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQND 886 (1036)
T ss_pred hhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHH
Confidence 112234567899999984 67899999999999999999999999865 5799999999843 246788
Q ss_pred HHHHHHhcCC--CCcEEEccccCC-H-HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE
Q 011779 328 LRNYVMQKKI--QDRVHFVNKTLT-V-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI 403 (477)
Q Consensus 328 l~~~~~~~~l--~~~v~~~g~~~~-l-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~ 403 (477)
++++++++++ +++|.|.|..++ + ..+|++||+||+||. +|+||++.+|||++|+|+| ++++||++|+
T Consensus 887 l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppV-------vs~vGGL~Dt 957 (1036)
T PLN02316 887 FVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPV-------VRKTGGLFDT 957 (1036)
T ss_pred HHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeE-------EEcCCCcHhh
Confidence 9999998865 678999876644 3 379999999999999 9999999999999999999 9999999999
Q ss_pred eecC-------------CceeeecCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 404 VVNG-------------TTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 404 v~~~-------------~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
|.++ .+|+++++.| +++++++|.+++.+ ++.+..+++.+++.+.+.|||+.++++|+++|+++.
T Consensus 958 V~d~d~~~~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 958 VFDVDHDKERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred ccccccccccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 9874 6899999998 99999999999986 466677888899888899999999999999999875
|
|
| >PRK00654 glgA glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=349.44 Aligned_cols=368 Identities=16% Similarity=0.175 Sum_probs=269.5
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh--hhh---------hhhhcCcEEEec
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS--LEH---------KMWDRGVQVISA 139 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--~~~---------~~~~~g~~v~~~ 139 (477)
|||++++.+..| ||...++..|+++|+++||+|.|+++..+......... ... .....|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 689999987544 89999999999999999999999997765432110000 000 001245665432
Q ss_pred cch----------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhh-CCCccccceeeeeeeccccc
Q 011779 140 KGQ----------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKE-DVPRVLPNVLWWIHEMRGHY 191 (477)
Q Consensus 140 ~~~----------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~h~~~~~~ 191 (477)
... + .+.. ..+||+||+|....+.....+... .......++++++|+.....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g 160 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQG 160 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCC
Confidence 110 0 1111 148999999985554432222211 11111257899999864210
Q ss_pred -ch---------------hh----------HhhcccccccceeeehhhHHHHHHH-----hHhhhccCCCCeEEEecCCc
Q 011779 192 -FK---------------LD----------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNS 240 (477)
Q Consensus 192 -~~---------------~~----------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~i~vi~ngvd 240 (477)
+. .. ....+..++.++++|...++.+... +...++.+..++.+|+||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid 240 (466)
T PRK00654 161 LFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGID 240 (466)
T ss_pred cCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCC
Confidence 10 00 0112467788899998888776542 11123445678999999999
Q ss_pred hhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 241 KELMEVAEDNV-----------AKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 241 ~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~-~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
.+.|.|..++. .+...++.+++++|+++ +.++|+++||+.++||++.+++|++++.+ .+
T Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~ 311 (466)
T PRK00654 241 YDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QG 311 (466)
T ss_pred ccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cC
Confidence 99887653210 12234567899999985 67899999999999999999999999865 47
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
++|+|+|+|.. ++.+++++++++++ +++. +.|+.++ +..+|++||++|+||. +|+||++++|||+||+|+|
T Consensus 312 ~~lvivG~g~~---~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 312 GQLVLLGTGDP---ELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPI 384 (466)
T ss_pred CEEEEEecCcH---HHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEE
Confidence 99999999842 36788899998886 4565 4677644 5688999999999999 9999999999999999999
Q ss_pred eeccccccccCCCceEEeecC------CceeeecCCCCCHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 387 LQKCLYQGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
++++||+.|++.++ .+|++++++| +++++++|.++++ +++.+.+|++++.+ +.|||+++
T Consensus 385 -------~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~ 452 (466)
T PRK00654 385 -------VRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRALELYRQPPLWRALQRQAMA---QDFSWDKS 452 (466)
T ss_pred -------EeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHH
Confidence 99999999999888 8999999998 9999999999886 77778888887754 68999999
Q ss_pred HHHHHHHHHHHHh
Q 011779 458 AERIAVVLKEVLK 470 (477)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (477)
+++|+++|+++++
T Consensus 453 a~~~~~lY~~~~~ 465 (466)
T PRK00654 453 AEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
|
| >TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=344.58 Aligned_cols=344 Identities=20% Similarity=0.221 Sum_probs=264.7
Q ss_pred CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------------------hh
Q 011779 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------------------QE 143 (477)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------------------~~ 143 (477)
.||+++++.+|+++|.++||+|+|+|......... ......|++++.... .+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPP------VVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------ccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999653321110 011123555543310 00
Q ss_pred hHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------ch---h--hHhhcccccccce
Q 011779 144 TINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FK---L--DYVKHLPLVAGAM 207 (477)
Q Consensus 144 ~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~~---~--~~~~~~~~~~~~~ 207 (477)
.+.+ ..+||+||+|....+. ....... . ...+++.++|+..... .. . .....+..++.++
T Consensus 93 ~~~~~~~~~~Diih~h~~~~~~-~~~~~~~-~--~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi 168 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLSGQ-VGWLLRD-R--WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLI 168 (405)
T ss_pred HHhhccCCCCCeEEechHHHHH-HHHHHHH-h--cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEE
Confidence 1111 2479999999744332 2222221 1 1246788888753100 00 0 0122446777888
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ 287 (477)
+.|....+.+.+ .++.+..++.+||||+|.+.|.+.. +...++++++++++++|+++||+.+.||++.
T Consensus 169 ~~s~~~~~~~~~----~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 169 ANTDEEARDLVR----HYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ECCHHHHHHHHH----HcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHH
Confidence 887776665543 5577778999999999998876532 3456778898888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCcCc--eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEc
Q 011779 288 FLHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~--~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~p 363 (477)
+++|+.++.+ +.++ ++|+|+|++.....++.++++++++++++.++|.|+|+. +++..+|+.||++++|
T Consensus 237 li~a~~~l~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~p 309 (405)
T TIGR03449 237 LLRAVAELLD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVP 309 (405)
T ss_pred HHHHHHHHHh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEEC
Confidence 9999999876 4465 999999964322214678899999999999999999985 7899999999999999
Q ss_pred CCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 364 SQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 364 S~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
|. .|+||++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|.+++++++.+++|+++
T Consensus 310 s~--~E~~g~~~lEAma~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~ 378 (405)
T TIGR03449 310 SY--NESFGLVAMEAQACGTPVV-------AARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAA 378 (405)
T ss_pred CC--CCCcChHHHHHHHcCCCEE-------EecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99 9999999999999999999 999999999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 444 GYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++.+ ++|||+.+++++.++|.+++.
T Consensus 379 ~~~~~-~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 379 AVEHA-AGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhh
Confidence 99887 679999999999999998763
|
Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=353.19 Aligned_cols=353 Identities=16% Similarity=0.176 Sum_probs=260.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCc--------------EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT--------------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 141 (477)
||+++.+....||+|+++.+|+.+|.++++ +|.+++........ .+...+...|+++..+..
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~----~~~~~L~~~Gv~v~~l~~ 358 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD----FFAATLADAGIPVSVYSD 358 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc----hHHHHHHhCCCeEEEecc
Confidence 699999999999999999999999999854 45555322111100 123345556666643311
Q ss_pred ---------------------------------hhhHHHhcCCcEEEEcCcchhhHHHHHhh-hCCCccccceeeeeeec
Q 011779 142 ---------------------------------QETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 142 ---------------------------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~ 187 (477)
...+.+..+|||||+|+.....+...+.. .+. +.++.+.|+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gv----PvIv~t~h~~ 434 (694)
T PRK15179 359 MQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGV----PRIVLSVRTM 434 (694)
T ss_pred CCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCC----CEEEEEeCCC
Confidence 12345667999999998665443222221 222 2233345653
Q ss_pred ccccchhh----Hh---hccccccc--ceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHH
Q 011779 188 RGHYFKLD----YV---KHLPLVAG--AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (477)
Q Consensus 188 ~~~~~~~~----~~---~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (477)
........ +. ..+...+. ++++|....+. +.+.++++.+++.|||||+|.+.|.+.+... ..+.
T Consensus 435 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~----l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~---~~~~ 507 (694)
T PRK15179 435 PPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHR----YADWLGVDERRIPVVYNGLAPLKSVQDDACT---AMMA 507 (694)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHH----HHHHcCCChhHEEEECCCcCHHhcCCCchhh---HHHH
Confidence 22111111 11 11122233 23334333333 3346788888999999999988775432210 0011
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (477)
.++ ...+.+.++|+++||+.+.||++.+++|+.++.+ +.|+++|+|+|+| ++.+.++++++++++.
T Consensus 508 ~~~--~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QFD--ARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGG-----PLLESVREFAQRLGMG 573 (694)
T ss_pred hhc--cccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccC-----cchHHHHHHHHHcCCC
Confidence 111 2234567899999999999999999999999876 5689999999999 6788999999999999
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~ 418 (477)
++|+|+|+++++..+|+.+|++|+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|++++++|.
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVV-------at~~gG~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVV-------TTLAGGAGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEE-------EECCCChHHHccCCCCEEEeCCCCC
Confidence 999999999999999999999999999 9999999999999999999 9999999999999999999999885
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+.++++++|.+++.+......+++++++++.++|||+.+++++.++|+
T Consensus 645 ~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 645 TAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 567999999999887766778889999999999999999999999995
|
|
| >PLN02939 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=350.10 Aligned_cols=377 Identities=14% Similarity=0.103 Sum_probs=281.0
Q ss_pred CCccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh-----------hh--------
Q 011779 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----------HK-------- 128 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~-----------~~-------- 128 (477)
.+.|+|+|++.+..| ||..-++..|.++|+++||+|.|+++.++.........+. ..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 456899999988666 9999999999999999999999999877644311110000 00
Q ss_pred hhhcCcEEEeccc------h-------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhhC--CCcc
Q 011779 129 MWDRGVQVISAKG------Q-------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKED--VPRV 176 (477)
Q Consensus 129 ~~~~g~~v~~~~~------~-------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~ 176 (477)
....|++++.+.. . + .+.. ..+|||||+|....+.+...+.... -...
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~ 638 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFN 638 (977)
T ss_pred EEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCC
Confidence 0112455542210 0 0 1111 2589999999876655322222110 0112
Q ss_pred ccceeeeeeeccccc-ch----------hhH------------------hhcccccccceeeehhhHHHHHHH----hHh
Q 011779 177 LPNVLWWIHEMRGHY-FK----------LDY------------------VKHLPLVAGAMIDSHVTAEYWKNR----TRE 223 (477)
Q Consensus 177 ~~~~i~~~h~~~~~~-~~----------~~~------------------~~~~~~~~~~~~~s~~~~~~~~~~----~~~ 223 (477)
..++++++|+....- +. ... +..+.+++.++++|...+..+... +..
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~ 718 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQD 718 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHH
Confidence 257899999864211 00 000 012236788889999988877642 122
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCC---CCeEEEEEeecccCCCHHHHH
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~---~~~~il~vGrl~~~Kg~~~ll 289 (477)
.++....++.+|+||||.+.|.|..++ ..+...+..+++++|++. +.++|+++||+.++||++.++
T Consensus 719 ~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLl 798 (977)
T PLN02939 719 TLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIR 798 (977)
T ss_pred HhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHH
Confidence 345677899999999999999876432 122334678999999984 468999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCC--HHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~--l~~~~~~aDv~v~pS~~~ 367 (477)
+|+..+.+ ++++|+|+|+|+.. .+.+.++++++++++.++|.|+|..++ ...+|++||+||+||+
T Consensus 799 eA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr-- 865 (977)
T PLN02939 799 HAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM-- 865 (977)
T ss_pred HHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC--
Confidence 99998864 67899999998421 356888999999999899999998754 3579999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec---------CCceeeecCCCCCHHHHHHHHHHHHh----CH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN---------GTTGLLHPVGKEGITPLAKNIVKLAT----HV 434 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~---------~~~G~l~~~~d~~~~~la~~i~~ll~----~~ 434 (477)
+|+||++++|||+||+|+| ++++||+.|+|.+ +.+|++++++| +++++++|.+++. |+
T Consensus 866 ~EPfGLvqLEAMAyGtPPV-------Vs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~eaLa~AL~rAL~~~~~dp 936 (977)
T PLN02939 866 FEPCGLTQMIAMRYGSVPI-------VRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQGLNSALERAFNYYKRKP 936 (977)
T ss_pred ccCCcHHHHHHHHCCCCEE-------EecCCCCcceeecCCccccccCCCceEEecCCC--HHHHHHHHHHHHHHhccCH
Confidence 9999999999999999999 9999999999875 57999999998 9999999998875 79
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
+.+++|++++. .+.|||+.++++|+++|++++....
T Consensus 937 e~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~~~ 972 (977)
T PLN02939 937 EVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVARAR 972 (977)
T ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999988764 3779999999999999999987654
|
|
| >PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=340.72 Aligned_cols=349 Identities=18% Similarity=0.201 Sum_probs=266.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhc------------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDR------------------ 132 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~------------------ 132 (477)
|+|+++...++. -.|+++.+-..+|.++||+|.+++...+..... ..+.+.......
T Consensus 1 m~ia~~~~~~P~-~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPL-SSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCc-cchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 689999998874 457999999999999999999999554432100 000000000000
Q ss_pred --CcE----EEeccc------h---------hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc
Q 011779 133 --GVQ----VISAKG------Q---------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (477)
Q Consensus 133 --g~~----v~~~~~------~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~ 191 (477)
+.. ....+. . ....+..+||+||+|....+.....+..... ...+++.+.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~--~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGV--LRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCC--CCCCeEEEEccccccc
Confidence 000 000000 0 0111346899999998655443333222111 1134577888753221
Q ss_pred ------chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhC
Q 011779 192 ------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265 (477)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~ 265 (477)
+...+...+...+.+++.|....+.+. .+|.+.+++.+||||+|.+.|.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-----~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-----KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 112344556778888888887776654 347778899999999999987643211
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.+++.|+++||+.+.||++.+++|++.+.+ +.++++|+|+|+| +++++++++++++++.++|.|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999999876 5689999999999 78899999999999999999999
Q ss_pred cc--CCHHHHHHhcCEEEEcCCC----CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~----~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
++ +++.++|+.||++|+||.. ..||||++++|||++|+||| +|+.||++|++.++.+|++++++|
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI-------~t~~~g~~E~v~~~~~G~lv~~~d-- 356 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVV-------STLHSGIPELVEADKSGWLVPEND-- 356 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEE-------EeCCCCchhhhcCCCceEEeCCCC--
Confidence 86 7899999999999999972 03999999999999999999 999999999999999999999998
Q ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 420 ITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 420 ~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++++++|.++++ |++.+++|++++++.+.++|+|+.+++++.++|++
T Consensus 357 ~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 357 AQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999 99999999999999999999999999999999976
|
|
| >PRK10307 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=344.55 Aligned_cols=357 Identities=13% Similarity=0.086 Sum_probs=270.2
Q ss_pred cEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh--H--HhhhhhhhhhcCcEEEeccch------
Q 011779 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE--V--IYSLEHKMWDRGVQVISAKGQ------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~--~--~~~~~~~~~~~g~~v~~~~~~------ 142 (477)
|||++++..+.| ||++.++.+|+++|.++||+|+|+|......... . ...........|+++++.+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 789999987666 9999999999999999999999999653211100 0 000001111346666543211
Q ss_pred --h--------------hHHH--hcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccc------cch----
Q 011779 143 --E--------------TINT--ALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGH------YFK---- 193 (477)
Q Consensus 143 --~--------------~~~~--~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~---- 193 (477)
+ .+.+ ..+||+||+|.+..... .....+... ..++++++|+.... ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~---~~~~v~~~~d~~~~~~~~~~~~~~~~~ 157 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLS---GARTWLHIQDYEVDAAFGLGLLKGGKV 157 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhh---CCCEEEEeccCCHHHHHHhCCccCcHH
Confidence 0 0111 16899999998543221 121222211 13566777764311 000
Q ss_pred -----hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 011779 194 -----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (477)
Q Consensus 194 -----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (477)
......++.++.+++.|....+.+.+ ++.+..++.+||||+|.+.|.+.... .+..+++++++++
T Consensus 158 ~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~-----~~~~~~~i~vi~ngvd~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (412)
T PRK10307 158 ARLATAFERSLLRRFDNVSTISRSMMNKARE-----KGVAAEKVIFFPNWSEVARFQPVADA-----DVDALRAQLGLPD 227 (412)
T ss_pred HHHHHHHHHHHHhhCCEEEecCHHHHHHHHH-----cCCCcccEEEECCCcCHhhcCCCCcc-----chHHHHHHcCCCC
Confidence 01223356788888888888877653 46677889999999999887654221 1345788899988
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
++++|+|+|++.+.||++.+++|++++. +.++++|+|+|+| +..++++++++++++. +|.|+|++
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~-~v~f~G~~~ 293 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQG-----GGKARLEKMAQCRGLP-NVHFLPLQP 293 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCC-----hhHHHHHHHHHHcCCC-ceEEeCCCC
Confidence 8899999999999999999999998773 3478999999999 6788999999999986 79999985
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCc----ccHHHHHHHHcCCCEEeeccccccccCCC--ceEEeecCCceeeecCCCCCH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLLQKCLYQGTAAGG--TTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~----~g~~~lEAma~G~PvI~~~~~~~~~~~gg--~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+++..+|++||++++||. .|+ +|.+++|||++|+||| +++.|| ..+++. ++|++++++| +
T Consensus 294 ~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi-------~s~~~g~~~~~~i~--~~G~~~~~~d--~ 360 (412)
T PRK10307 294 YDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVV-------ATAEPGTELGQLVE--GIGVCVEPES--V 360 (412)
T ss_pred HHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEE-------EEeCCCchHHHHHh--CCcEEeCCCC--H
Confidence 689999999999999998 788 5777999999999999 998876 457775 5999999998 9
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
++++++|.++++|++.+++|++++++.++++|||+.+++++.++|++++..
T Consensus 361 ~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 361 EALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998764
|
|
| >TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=343.95 Aligned_cols=354 Identities=16% Similarity=0.148 Sum_probs=247.2
Q ss_pred CchhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------------------hh
Q 011779 87 SGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------------------QE 143 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------------------~~ 143 (477)
||++.++.+|+++|.++|| +|+|+|...+.......+.....-...|++++..+. ..
T Consensus 26 GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (439)
T TIGR02472 26 GGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADNLL 105 (439)
T ss_pred CCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHH
Confidence 8999999999999999997 999999543221000000000011134666654421 11
Q ss_pred hHHHh--cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------h-------------hHhhc
Q 011779 144 TINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------L-------------DYVKH 199 (477)
Q Consensus 144 ~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~-------------~~~~~ 199 (477)
...+. .+||+||+|+...+.. ........ ..|++.+.|+....... . .....
T Consensus 106 ~~~~~~~~~~DvIH~h~~~~~~~-~~~~~~~~---~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T TIGR02472 106 QHLRQQGHLPDLIHAHYADAGYV-GARLSRLL---GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEET 181 (439)
T ss_pred HHHHHcCCCCCEEEEcchhHHHH-HHHHHHHh---CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHH
Confidence 12222 3699999998544332 22222211 24678889964321100 0 01123
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
+...+.+++.+.. .+.+.+....+++.+++.+||||+|.+.|.+......... ....+++++.+++.++|+++||+
T Consensus 182 ~~~ad~ii~~s~~---~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vGrl 257 (439)
T TIGR02472 182 LAHASLVITSTHQ---EIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSE-IDNLLAPFLKDPEKPPILAISRP 257 (439)
T ss_pred HHhCCEEEECCHH---HHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchh-HHHHHHhhccccCCcEEEEEcCC
Confidence 4456666765432 2222222223677889999999999998876432211111 11223345556677899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc------hHHHHHHHHHHHhcCCCCcEEEccc--cCCHH
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNK--TLTVA 351 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~------~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~ 351 (477)
.+.||++.+++|++.+.+ ++ ..+++. +++|+|+... ..+.+++.++++++++.++|+|+|+ .+++.
T Consensus 258 ~~~Kg~~~li~A~~~l~~-~~----~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~ 331 (439)
T TIGR02472 258 DRRKNIPSLVEAYGRSPK-LQ----EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVP 331 (439)
T ss_pred cccCCHHHHHHHHHhChh-hh----hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHH
Confidence 999999999999986432 11 113333 3568764321 1133456677889999999999997 48899
Q ss_pred HHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHH
Q 011779 352 PYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 427 (477)
Q Consensus 352 ~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i 427 (477)
.+|+.| |+||+||. .|+||++++||||||+||| +|+.||+.|++.++.+|++++++| +++++++|
T Consensus 332 ~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV-------~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i 400 (439)
T TIGR02472 332 ELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIV-------ATDDGGPRDIIANCRNGLLVDVLD--LEAIASAL 400 (439)
T ss_pred HHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEE-------EeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHH
Confidence 999987 99999999 9999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 428 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.++++|++.+++|++++++++.++|||+.++++|++++
T Consensus 401 ~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 401 EDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998876
|
This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. |
| >cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=335.33 Aligned_cols=347 Identities=20% Similarity=0.241 Sum_probs=268.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--e--------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S-------------- 138 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~-------------- 138 (477)
|||+++++. ..||.++++.+++++|.+.||+|+|++...+..... ...++.+. +
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE---------YSPNIFFHEVEVPQYPLFQYPPYDL 70 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh---------hccCeEEEEecccccchhhcchhHH
Confidence 688888742 349999999999999999999999999654321110 00111110 0
Q ss_pred --ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeee
Q 011779 139 --AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 139 --~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s 210 (477)
.....+..+..+||+||+|.+....+..............++++++|+..... +.......++.++.+++.|
T Consensus 71 ~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 71 ALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcC
Confidence 01112334567999999997543222222111111112357788888643211 1122334456788888888
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .+ ....++.+||||+|...+.+.. ....+++++.++++++++++||+.+.||++.+++
T Consensus 151 ~~~~~~~~~----~~-~~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 151 ESLRQETYE----LF-DITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred HHHHHHHHH----hc-CCcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHH
Confidence 887776654 23 2456799999999988765432 2345677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
++.++.+ + ++++|+++|.| +..+.+++.++++++.++|.|+|+.+++..+|+.||++|+||. .|+
T Consensus 218 a~~~l~~-------~-~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~ 282 (371)
T cd04962 218 IFAKVRK-------E-VPARLLLVGDG-----PERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KES 282 (371)
T ss_pred HHHHHHh-------c-CCceEEEEcCC-----cCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCC
Confidence 9998864 2 56899999998 5677889999999998999999999999999999999999998 999
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
||++++|||++|+||| +++.||..|++.++.+|++++++| ++++++++.++++|++.+++|++++++.+.+
T Consensus 283 ~~~~~~EAma~g~PvI-------~s~~~~~~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (371)
T cd04962 283 FGLAALEAMACGVPVV-------ASNAGGIPEVVKHGETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAE 353 (371)
T ss_pred CccHHHHHHHcCCCEE-------EeCCCCchhhhcCCCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988 9999999999999999999999999999889
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 011779 451 IFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 451 ~fs~~~~~~~~~~~~~~~ 468 (477)
+|||+.+++++.++|+++
T Consensus 354 ~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 354 RFDSERIVPQYEALYRRL 371 (371)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 999999999999999863
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=326.71 Aligned_cols=352 Identities=19% Similarity=0.209 Sum_probs=253.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHH----HhCCc--------EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLL----RGVGT--------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-- 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L----~~~G~--------~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-- 141 (477)
.+++++.++..||+|+.+.+++-++ .+.|- .|.++|..-.+... ...+.......++.+..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELR--QDFFLKEVLEEQVEVLEIAKIT 240 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccC--cchhHHHHHhcCCceEEeeccc
Confidence 4899999999999999988555544 44443 57777733211110 11233344445555532211
Q ss_pred -------------------------------hhhHHHhcCCcEEEEcCcchhhHH-HHHhhhCCCccccceeeeeeeccc
Q 011779 142 -------------------------------QETINTALKADLIVLNTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRG 189 (477)
Q Consensus 142 -------------------------------~~~~~~~~~~DiV~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~ 189 (477)
...+.+..+||+||+|...+.... ..++..+. +.++.+.|....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagv----pviv~~~h~~~~ 316 (578)
T PRK15490 241 GNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGV----PRIQLGLRGLPP 316 (578)
T ss_pred hhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCC----CEEEEeecccCC
Confidence 124556789999999985543321 12222233 223444554222
Q ss_pred ccchhhHhh---c-------ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHH
Q 011779 190 HYFKLDYVK---H-------LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREH 259 (477)
Q Consensus 190 ~~~~~~~~~---~-------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~ 259 (477)
......... . ....+ .++.+..+++. +.+.++++++|+.+||||+|.+.|.+.... ...
T Consensus 317 ~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~----l~~~lgip~~KI~VIyNGVD~~rf~p~~~~------~~~ 385 (578)
T PRK15490 317 VVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRH----YADWLKLEAKHFQVVYNGVLPPSTEPSSEV------PHK 385 (578)
T ss_pred cchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHH----HHHHhCCCHHHEEEEeCCcchhhcCccchh------hHH
Confidence 111111100 0 11112 44444444444 334668899999999999999887764321 112
Q ss_pred HHH--hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 260 VRE--SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 260 ~r~--~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
.++ ..+++++.++|+++||+.+.||++.+++++.++.+ +.|+++|+|+|+| +++++++++++++++
T Consensus 386 ~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG-----~~~eeLk~la~elgL 453 (578)
T PRK15490 386 IWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDG-----DLRAEAQKRAEQLGI 453 (578)
T ss_pred HHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCc-----hhHHHHHHHHHHcCC
Confidence 222 23445667889999999999999999999998876 5689999999999 788999999999999
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
.++|+|+|+.+++..+|+.+|+||+||. +||||++++|||++|+||| +++.||..|+|.++.+|++++++|
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVV-------ATdvGG~~EiV~dG~nG~LVp~~D 524 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVI-------STPAGGSAECFIEGVSGFILDDAQ 524 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEE-------EeCCCCcHHHcccCCcEEEECCCC
Confidence 9999999999999999999999999999 9999999999999999999 999999999999999999999988
Q ss_pred CCHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNI---VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 418 ~~~~~la~~i---~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
++++++++ ..+..+.+.+..|+++++++++++|||+.++++|.++|..
T Consensus 525 --~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 525 --TVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 88888876 4455555566789999999999999999999999999975
|
|
| >TIGR02095 glgA glycogen/starch synthases, ADP-glucose type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=339.02 Aligned_cols=365 Identities=19% Similarity=0.177 Sum_probs=266.9
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh----------hh--------hhhhhc
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS----------LE--------HKMWDR 132 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~----------~~--------~~~~~~ 132 (477)
|||++++.+..| ||...++..|+++|+++||+|.|+++..+......... +. ......
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 689999988555 89999999999999999999999997766432211000 00 001112
Q ss_pred CcEEEeccch-------------------h---------hHH--HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceee
Q 011779 133 GVQVISAKGQ-------------------E---------TIN--TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (477)
Q Consensus 133 g~~v~~~~~~-------------------~---------~~~--~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (477)
|++++.+... + .+. ...+||+||+|....+.... .++........++++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~-~l~~~~~~~~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPA-LLKAVYRPNPIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHH-HHHhhccCCCCCEEE
Confidence 4444321100 0 011 12589999999865544322 222221110257889
Q ss_pred eeeecccc-cchhh-------------------------HhhcccccccceeeehhhHHHHHHH-----hHhhhccCCCC
Q 011779 183 WIHEMRGH-YFKLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPD 231 (477)
Q Consensus 183 ~~h~~~~~-~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~ 231 (477)
++|+.... .+... ....+..++.++++|...++.+... +...+..+..+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 99986421 11100 0123457788888888877766532 00011224578
Q ss_pred eEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 011779 232 TYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (477)
Q Consensus 232 i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (477)
+.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999887643211 12234567899999986 78999999999999999999999999865
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
.+++|+|+|+|.+ ++.+++++++++++ +++.+.+.. +++..+|++||++++||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~~---~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGDP---ELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCCH---HHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 4699999999842 46778888887764 577776653 447789999999999999 999999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecC------CceeeecCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG------TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYE 446 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~------~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~ 446 (477)
|||++|+||| +++.||..|++.++ .+|++++++| +++++++|.+++. +++.+++|++++.+
T Consensus 384 EAma~G~pvI-------~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 454 (473)
T TIGR02095 384 YAMRYGTVPI-------VRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGALLAALSRALRLYRQDPSLWEALQKNAMS 454 (473)
T ss_pred HHHHCCCCeE-------EccCCCccceEecCCCCCCCCceEEeCCCC--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 9999999999 99999999999988 8999999998 9999999999888 99999999998863
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|||++++++|+++|+++
T Consensus 455 ---~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 455 ---QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred ---cCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999863
|
This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate. |
| >TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=327.14 Aligned_cols=344 Identities=20% Similarity=0.205 Sum_probs=263.9
Q ss_pred cEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh--------
Q 011779 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-------- 143 (477)
Q Consensus 75 ~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~-------- 143 (477)
|||++++..++| ||.+.++.+|+++|.++ ++|.|++...+. ....++++...+...
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------------FDSEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------------hcCCCeEEEEecChhhccchhhh
Confidence 689999998876 88889999999999987 777777754321 112344443222110
Q ss_pred --h-------HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------------chhhHhhccc
Q 011779 144 --T-------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------FKLDYVKHLP 201 (477)
Q Consensus 144 --~-------~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------~~~~~~~~~~ 201 (477)
. .....++|+||+|+.........+.+ . ...+++++.|+..... ........+.
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~--~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKK--L--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIE 143 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHH--h--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHh
Confidence 0 01124799999998554432121111 1 1256788899864211 0111223456
Q ss_pred ccccceeeehhhHHHHHHHhHhhh-ccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
.++.+++.|....+.+.+ .+ +++..++.+||||+|.+.+.+.. +...++++++++++++|+++||+.
T Consensus 144 ~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~ 211 (388)
T TIGR02149 144 AADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRIT 211 (388)
T ss_pred hCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccc
Confidence 778888888887776654 33 56678899999999998776532 355778889888889999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC-CCcEEEcc-cc--CCHHHHHHh
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVN-KT--LTVAPYLAA 356 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g-~~--~~l~~~~~~ 356 (477)
+.||++.+++|++++. ++++++++|+|... ..+.+.+++.+.+++. .++|.+++ .. +++..+|+.
T Consensus 212 ~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 212 RQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred cccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 9999999999999873 46889998876432 2356777887777765 34577654 43 789999999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH------HHHHHHHHHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKL 430 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~------~~la~~i~~l 430 (477)
||++|+||. .|+||++++|||++|+||| +++.||..|++.++.+|++++++| + ++++++|.++
T Consensus 281 aDv~v~ps~--~e~~g~~~lEA~a~G~PvI-------~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l 349 (388)
T TIGR02149 281 AEVFVCPSI--YEPLGIVNLEAMACGTPVV-------ASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINIL 349 (388)
T ss_pred CCEEEeCCc--cCCCChHHHHHHHcCCCEE-------EeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHH
Confidence 999999999 9999999999999999999 999999999999999999999988 7 8999999999
Q ss_pred HhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++|++.+++|++++++.+.++|||+.+++++.++|++++
T Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 350 LADPELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999863
|
This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. |
| >PRK14098 glycogen synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=330.05 Aligned_cols=368 Identities=17% Similarity=0.153 Sum_probs=268.3
Q ss_pred ccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhH--H-h-----hh----hhh---------
Q 011779 74 SKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV--I-Y-----SL----EHK--------- 128 (477)
Q Consensus 74 ~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~-~-----~~----~~~--------- 128 (477)
+|||+|++.+..| ||..-++..|.++|+++||+|.|+.+..+...... . . .+ ...
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 4899999988666 99999999999999999999999998765443210 0 0 00 000
Q ss_pred -hhhcCcEEEeccch-----------------------h---------hHHH--hcCCcEEEEcCcchhhHHHHHhhhCC
Q 011779 129 -MWDRGVQVISAKGQ-----------------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLKEDV 173 (477)
Q Consensus 129 -~~~~g~~v~~~~~~-----------------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~ 173 (477)
....+++++.+... + .+.. ..+|||||+|....+.... .++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~-~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPL-LLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH-HHHHHh
Confidence 00012333211000 0 1111 2489999999854433222 222111
Q ss_pred ----Cccccceeeeeeeccccc-chh---------h--------------HhhcccccccceeeehhhHHHHHHHhHhhh
Q 011779 174 ----PRVLPNVLWWIHEMRGHY-FKL---------D--------------YVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (477)
Q Consensus 174 ----~~~~~~~i~~~h~~~~~~-~~~---------~--------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (477)
.....+++.++|+..... +.. . .+..+..++.++++|...++.+.......+
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 011368899999864211 000 0 111235778889999988887654111123
Q ss_pred cc------CCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHH
Q 011779 226 RI------KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 226 ~~------~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~ 286 (477)
|+ ...++.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++
T Consensus 244 gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d 323 (489)
T PRK14098 244 GLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAE 323 (489)
T ss_pred ChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHH
Confidence 33 367899999999999988754321 12234678888999873 568999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+.++.+ ++++|+|+|+|+. ++++.++++++++ +++|.|+|.. +++..+|++||++|+||
T Consensus 324 ~li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~--~~~V~~~g~~~~~~~~~~~a~aDi~l~PS 389 (489)
T PRK14098 324 LLAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEH--PEQVSVQTEFTDAFFHLAIAGLDMLLMPG 389 (489)
T ss_pred HHHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHC--CCCEEEEEecCHHHHHHHHHhCCEEEeCC
Confidence 99999999865 5899999999842 3678899998877 4789999975 45789999999999999
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec----CCceeeecCCCCCHHHHHHHHHHHH---hCHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN----GTTGLLHPVGKEGITPLAKNIVKLA---THVERR 437 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~----~~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~ 437 (477)
. .|+||++.+|||++|+|+| ++++||+.|.+.+ +.+|++++++| +++++++|.+++ +|++.+
T Consensus 390 ~--~E~~Gl~~lEAma~G~ppV-------v~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 390 K--IESCGMLQMFAMSYGTIPV-------AYAGGGIVETIEEVSEDKGSGFIFHDYT--PEALVAKLGEALALYHDEERW 458 (489)
T ss_pred C--CCCchHHHHHHHhCCCCeE-------EecCCCCceeeecCCCCCCceeEeCCCC--HHHHHHHHHHHHHHHcCHHHH
Confidence 9 9999999999999999999 9999999998864 67999999998 999999999865 588888
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++++++. .+.|||++++++|+++|+++++
T Consensus 459 ~~~~~~~~---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 459 EELVLEAM---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHh---cCCCChHHHHHHHHHHHHHHhc
Confidence 88877664 4789999999999999999864
|
|
| >PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=320.32 Aligned_cols=339 Identities=17% Similarity=0.258 Sum_probs=253.5
Q ss_pred cEEEEEec-cCC--C---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE--Eeccc-----
Q 011779 75 KLVLLVSH-ELS--L---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAKG----- 141 (477)
Q Consensus 75 ~~Il~v~~-~~~--~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v--~~~~~----- 141 (477)
.||++++. .++ + ||+|+++..+++.|.. +|++++...+...+ ......|+.+ +++..
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 72 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPE-------YTKVNDNCDIHYIGFSRIYKRL 72 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCc-------hhhccCCCceEEEEeccccchh
Confidence 35666554 332 2 8889999999999943 99999965543111 0112223333 22211
Q ss_pred ------------hhhH---HH---hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhccccc
Q 011779 142 ------------QETI---NT---ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLV 203 (477)
Q Consensus 142 ------------~~~~---~~---~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~ 203 (477)
...+ .. ..++|+||+|+..... ..+....+. .+++.++|+.. ... .+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~---~~~~~~~~~--~~~v~~~h~~~----~~~---~~~~~ 140 (380)
T PRK15484 73 FQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY---RQIRERAPQ--AKLVMHMHNAF----EPE---LLDKN 140 (380)
T ss_pred hhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH---HHHHhhCCC--CCEEEEEeccc----Chh---HhccC
Confidence 0111 11 2569999999854322 112222221 46778888642 111 22355
Q ss_pred ccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC
Q 011779 204 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK 283 (477)
Q Consensus 204 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K 283 (477)
+.+++.|....+.+.+. .+..++.+||||+|.+.|.+.. ...++++++++++..+|+++||+.+.|
T Consensus 141 ~~ii~~S~~~~~~~~~~------~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~K 206 (380)
T PRK15484 141 AKIIVPSQFLKKFYEER------LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDK 206 (380)
T ss_pred CEEEEcCHHHHHHHHhh------CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCcccc
Confidence 77888887777665542 3556899999999988776532 245677888888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc----chHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
|++.+++|+.++.+ +.|+++|+|+|+|... ...+.+.+++++++++ ++|.|+|++ +++..+|+.|
T Consensus 207 g~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~a 277 (380)
T PRK15484 207 GILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLA 277 (380)
T ss_pred CHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhC
Confidence 99999999999876 6689999999987532 2235567777777665 589999986 6899999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCcee-eecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~-l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|+||. +.|+||++++|||+||+||| +++.||++|++.++.+|+ ++++.| +++++++|.++++|++.
T Consensus 278 Dv~v~pS~-~~E~f~~~~lEAma~G~PVI-------~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~ 347 (380)
T PRK15484 278 DLVVVPSQ-VEEAFCMVAVEAMAAGKPVL-------ASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL 347 (380)
T ss_pred CEEEeCCC-CccccccHHHHHHHcCCCEE-------EeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH
Confidence 99999997 25999999999999999999 999999999999999998 567777 99999999999999985
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
.+|++++++.+.++|||++++++++++|++..
T Consensus 348 -~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 348 -TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999998754
|
|
| >cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=320.28 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=260.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcE-EEec-----------cchh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISA-----------KGQE 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~-----------~~~~ 143 (477)
+||++++....||+++.+.+++++|.++||+|++++.......... ...... .+.. ....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP--------IDATIILNLNMSKNPLSFLLALWKLR 72 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch--------hhccceEEecccccchhhHHHHHHHH
Confidence 4889998888899999999999999999999999985433221100 000000 0000 1123
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh-h-HhhcccccccceeeehhhHHHHHHHh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-YVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-~-~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
.+.+..+||+||+|......+.. +.+... ..++++.+.|+........ . +.......+..++.+....+.+.
T Consensus 73 ~~~~~~~pdiv~~~~~~~~~~~~-l~~~~~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~--- 146 (360)
T cd04951 73 KILRQFKPDVVHAHMFHANIFAR-LLRLFL--PSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFI--- 146 (360)
T ss_pred HHHHhcCCCEEEEcccchHHHHH-HHHhhC--CCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHH---
Confidence 44566799999999865443322 222211 2256778888764321111 1 11111233334444444444433
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
+..+++..++.++|||+|...+.+.... ...+++++++++++++++++|++.+.||++.+++++.++.+
T Consensus 147 -~~~~~~~~~~~~i~ng~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~---- 215 (360)
T cd04951 147 -ASKAFNANKSFVVYNGIDTDRFRKDPAR------RLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS---- 215 (360)
T ss_pred -hccCCCcccEEEEccccchhhcCcchHH------HHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh----
Confidence 3445677899999999998877554321 45678889988889999999999999999999999999876
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
+.|+++|+|+|+| +..+++++.++++++.++|.|+|+++++..+|+.||++++||. .|+||++++|||++
T Consensus 216 ---~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~ 285 (360)
T cd04951 216 ---DYLDIKLLIAGDG-----PLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMAC 285 (360)
T ss_pred ---hCCCeEEEEEcCC-----CcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHc
Confidence 5689999999998 5678899999999998999999999999999999999999999 89999999999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
|+||| +++.|+..|++.+ +|++++++| +++++++|.++++ +++.+..++++ ++.+.+.|||+.++++
T Consensus 286 G~PvI-------~~~~~~~~e~i~~--~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 286 ELPVV-------ATDAGGVREVVGD--SGLIVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQ 353 (360)
T ss_pred CCCEE-------EecCCChhhEecC--CceEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHH
Confidence 99999 9999999999966 899999988 9999999999995 66777777766 8888899999999999
Q ss_pred HHHHHH
Q 011779 461 IAVVLK 466 (477)
Q Consensus 461 ~~~~~~ 466 (477)
|.++|+
T Consensus 354 ~~~~y~ 359 (360)
T cd04951 354 WLTLYT 359 (360)
T ss_pred HHHHhh
Confidence 999996
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have |
| >cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=323.16 Aligned_cols=351 Identities=19% Similarity=0.189 Sum_probs=255.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------hhH-
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------ETI- 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------~~~- 145 (477)
||+++++.+..||.++++.+++++|.+.||+|++++.................. .|..+ .+... ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~ 77 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADI-ELSEEEKEIYLEWNEENA 77 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCC-CCCHHHHHHHHHHHHHHh
Confidence 589999988889999999999999999999999998654332111000111101 13332 11111 011
Q ss_pred ---HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh---hHhhcccccccceeeehhhHHHHHH
Q 011779 146 ---NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKHLPLVAGAMIDSHVTAEYWKN 219 (477)
Q Consensus 146 ---~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (477)
....+||+||+|++....+ ..+... ...+++++.|......... .....+..++.+++.+ .+..
T Consensus 78 ~~~~~~~~~Dvv~~h~~~~~~~-~~~~~~----~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~-- 147 (372)
T cd03792 78 ERPLLDLDADVVVIHDPQPLAL-PLFKKK----RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYV-- 147 (372)
T ss_pred ccccccCCCCEEEECCCCchhH-HHhhhc----CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhc--
Confidence 1245899999998764322 222221 1256778888754322211 1123334555555444 2221
Q ss_pred HhHhhhccCCCCeEEEecCCchhh-hhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHH
Q 011779 220 RTRERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (477)
Q Consensus 220 ~~~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~ 298 (477)
..+++..++ +||||+|... +..... ......+++++|+++++++|+++||+.+.||++.+++|++.+.+
T Consensus 148 ----~~~~~~~~~-vipngvd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~- 217 (372)
T cd03792 148 ----PPQVPPRKV-IIPPSIDPLSGKNRELS----PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE- 217 (372)
T ss_pred ----CCCCCCceE-EeCCCCCCCccccCCCC----HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh-
Confidence 123444555 9999999653 111111 11245678889998899999999999999999999999999866
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc----CCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~----~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.++++|+++|+|+..+....+.++++.+..++.++|.|+|.. +++..+|++||++++||. .||||++
T Consensus 218 ------~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~ 289 (372)
T cd03792 218 ------RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLT 289 (372)
T ss_pred ------hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHH
Confidence 4588999999998643333344456666667788899999874 679999999999999999 9999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 454 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 454 (477)
++|||+||+||| +++.||..+++.++.+|+++++ .++++++|.+++.|++.+++|++++++.+.++|+|
T Consensus 290 ~lEA~a~G~Pvv-------~s~~~~~~~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~ 358 (372)
T cd03792 290 VTEALWKGKPVI-------AGPVGGIPLQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLI 358 (372)
T ss_pred HHHHHHcCCCEE-------EcCCCCchhhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCH
Confidence 999999999999 9999999999999999999874 57889999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHH
Q 011779 455 HHMAERIAVVLKEV 468 (477)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (477)
+.+++++.++|+++
T Consensus 359 ~~~~~~~~~~~~~~ 372 (372)
T cd03792 359 TRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999863
|
The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases. |
| >cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=328.77 Aligned_cols=344 Identities=22% Similarity=0.266 Sum_probs=258.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-----c-h------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----G-Q------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-----~-~------ 142 (477)
||||++++++..||+++++.+|+++|.++||+|+++|...+.... .......++.+.... . .
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC------FEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc------chhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 789999999989999999999999999999999999965332110 011111123221110 0 0
Q ss_pred ----hh--------HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------cchhh--------H
Q 011779 143 ----ET--------INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLD--------Y 196 (477)
Q Consensus 143 ----~~--------~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~~~--------~ 196 (477)
+. .....++|+||+++......+.... .+ .++++++|..... ..... .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~---~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLF---SP---SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHh---cC---CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 00 1334689999998754433322111 11 4677888843211 11111 1
Q ss_pred hhcccccccceeeehhhHHHHHHHhHhhhcc-CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEE
Q 011779 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (477)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~ 275 (477)
...++.++.+++.|....+.+.+. ++. ...++.+|+||+|.+.|.+.... ..++.....++.++|++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFKKT----FPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHHHH----hcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 123567788888888888776553 332 33345699999999887654321 12233445577899999
Q ss_pred EeecccCCCHHHHHHHHHHHHHHHHhhccCc---CceEEEEEecCCCc---chHHHHHHHHHHHh-cCCCCcEEEcccc-
Q 011779 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEV---PSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT- 347 (477)
Q Consensus 276 vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~---~~~~l~ivG~g~~~---~~~~~~~l~~~~~~-~~l~~~v~~~g~~- 347 (477)
+||+.+.||++.+++|+.++.+ +. ++++|+++|+|+.. +..+.+++++++++ +++.++|.|+|++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~-------~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKD-------KLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred EeeecccCChHHHHHHHHHHHh-------hcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 9999999999999999999876 44 78999999998532 22356889999999 9999999999986
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
+++..+|+.||++++||. .|+||++++|||++|+||| +++.||..|++.++.+|+++++ | +++++++
T Consensus 290 ~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI-------~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~ 357 (392)
T cd03805 290 DSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVI-------ACNSGGPLETVVDGETGFLCEP-T--PEEFAEA 357 (392)
T ss_pred hHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEE-------EECCCCcHHHhccCCceEEeCC-C--HHHHHHH
Confidence 567899999999999999 9999999999999999999 9999999999999999999976 6 8999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.+++++++.+++|++++++.++++|||+.+++++
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999999999999999998764
|
ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
| >cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=320.02 Aligned_cols=336 Identities=21% Similarity=0.240 Sum_probs=263.0
Q ss_pred eccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------------hhhHH
Q 011779 81 SHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------------QETIN 146 (477)
Q Consensus 81 ~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--------------~~~~~ 146 (477)
.+.+..||+++++.+++++|.++||+|++++..... ...+...|++++.... .....
T Consensus 4 ~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (355)
T cd03819 4 LPALESGGVERGTLELARALVERGHRSLVASAGGRL---------VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLI 74 (355)
T ss_pred chhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch---------HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHH
Confidence 355667999999999999999999999999864321 1223334554433211 12344
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
+..+||+||+|+.........+... ...++++++|+...... .+...+...+.+++.|....+.+.+ .++
T Consensus 75 ~~~~~dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~~~~----~~~ 144 (355)
T cd03819 75 REEKVDIVHARSRAPAWSAYLAARR----TRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADHIRE----NYG 144 (355)
T ss_pred HHcCCCEEEECCCchhHHHHHHHHh----cCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHHHHH----hcC
Confidence 5689999999985443322222211 12578888997643221 3344456778888888877776653 567
Q ss_pred cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCc
Q 011779 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 306 (477)
Q Consensus 227 ~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~ 306 (477)
++..++.+||||+|.+.+.+..... .....+|++++.+++.++++++||+.+.||++.+++++..+.+ ..
T Consensus 145 ~~~~k~~~i~ngi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~ 214 (355)
T cd03819 145 VDPDRIRVIPRGVDLDRFDPGAVPP---ERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DD 214 (355)
T ss_pred CChhhEEEecCCccccccCccccch---HHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cC
Confidence 7888999999999998876543211 1123367888888889999999999999999999999999876 45
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC-CCCCCcccHHHHHHHHcCCCE
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS-QAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS-~~~~E~~g~~~lEAma~G~Pv 385 (477)
++++|+|+|.+...+ .+.+.+.+.++++++.++|.|+|+.+++..+|+.||++++|| . .|+||++++|||++|+||
T Consensus 215 ~~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~--~e~~~~~l~EA~a~G~Pv 291 (355)
T cd03819 215 PDVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE--PEAFGRTAVEAQAMGRPV 291 (355)
T ss_pred CCeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC--CCCCchHHHHHHhcCCCE
Confidence 789999999985332 356667788888899899999999999999999999999999 5 899999999999999999
Q ss_pred EeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
| +++.||..|++.++.+|++++++| +++++++|..++. +++.+++++++|++.+.++|+|+++
T Consensus 292 I-------~~~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 292 I-------ASDHGGARETVRPGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred E-------EcCCCCcHHHHhCCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9 999999999999998999999988 9999999975555 8999999999999999999999864
|
WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core. |
| >TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.17 Aligned_cols=378 Identities=16% Similarity=0.137 Sum_probs=268.6
Q ss_pred CCccEEEEEecc-C--------C----CCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHh--h---h------
Q 011779 72 MKSKLVLLVSHE-L--------S----LSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIY--S---L------ 125 (477)
Q Consensus 72 ~~~~~Il~v~~~-~--------~----~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~--~---~------ 125 (477)
.++|.|++++.. . . .||...++.+|+++|+++| |+|+|+|...........| + +
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~ 246 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSE 246 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccc
Confidence 456788888743 1 1 1566689999999999998 8999999654322100000 0 0
Q ss_pred ---hhhhhhcCcEEEeccc------hh----------------hHHHh--------------cCCcEEEEcCcchhhHHH
Q 011779 126 ---EHKMWDRGVQVISAKG------QE----------------TINTA--------------LKADLIVLNTAVAGKWLD 166 (477)
Q Consensus 126 ---~~~~~~~g~~v~~~~~------~~----------------~~~~~--------------~~~DiV~~~~~~~~~~~~ 166 (477)
.......|+.+++++. .. ..... ..||+||+|...++....
T Consensus 247 ~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 247 NDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAA 326 (1050)
T ss_pred cccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHH
Confidence 0111224677654331 10 11110 149999999866555433
Q ss_pred HHhhhCCCccccceeeeeeecccccc------------------h--hh---HhhcccccccceeeehhhHHHHHHHhH-
Q 011779 167 AVLKEDVPRVLPNVLWWIHEMRGHYF------------------K--LD---YVKHLPLVAGAMIDSHVTAEYWKNRTR- 222 (477)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~h~~~~~~~------------------~--~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~- 222 (477)
.+... ...|++.+.|....... . .. ....+..++.+++.+......+...+.
T Consensus 327 ~L~~~----lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 327 LLSGA----LNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHHh----hCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 33222 22578899996421100 0 00 122356778888888777765433210
Q ss_pred -----------------hhhccCCCCeEEEecCCchhhhhhhhhhHHHH-------------HHHHHHHHhhCCCCCCeE
Q 011779 223 -----------------ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR-------------VLREHVRESLGVRNEDLL 272 (477)
Q Consensus 223 -----------------~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~-------------~~~~~~r~~~~~~~~~~~ 272 (477)
.-||...+++.|||||+|++.|.|........ .....++ ++..++++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~~pdkpv 481 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFTNPRKPM 481 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcccCCCcE
Confidence 01233356999999999999998753221100 0012333 3445678889
Q ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc------chHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 273 il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~------~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
|+++||+.++||++.||+|+..+.+.. ..+++. +|+|+++.. ..++..+++++++++++.++|.|+|+
T Consensus 482 IL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~ 555 (1050)
T TIGR02468 482 ILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH 555 (1050)
T ss_pred EEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC
Confidence 999999999999999999999986421 125665 467876321 12345678899999999999999997
Q ss_pred c--CCHHHHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 347 T--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 347 ~--~~l~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
. +++..+|+.| |+||+||. +|+||++++||||||+||| +|+.||+.|++.++.+|++++++| +
T Consensus 556 v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVV-------ASdvGG~~EII~~g~nGlLVdP~D--~ 624 (1050)
T TIGR02468 556 HKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMV-------ATKNGGPVDIHRVLDNGLLVDPHD--Q 624 (1050)
T ss_pred CCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEE-------EeCCCCcHHHhccCCcEEEECCCC--H
Confidence 4 8899999988 69999999 9999999999999999999 999999999999999999999999 9
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++++|.++++|++.+++|++++++.+. +|+|+.++++|++.|..+..+.
T Consensus 625 eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 625 QAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999985 6999999999999999887544
|
Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein. |
| >cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=314.81 Aligned_cols=345 Identities=23% Similarity=0.302 Sum_probs=271.3
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------hh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------QE 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------~~ 143 (477)
||+++.+.+.+||+++.+..++++|.+.|++|.+++...... ....+...+++++.... ..
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-------LGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-------hhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 589999999999999999999999999999999998654321 12233334666543321 12
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---chh----hHhhcccccccceeeehhhHHH
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FKL----DYVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---~~~----~~~~~~~~~~~~~~~s~~~~~~ 216 (477)
.+.+..+||+||++......+....... . ..++++++.|+..... ... .........+.+++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARL-A--GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHh-c--CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 3445679999999875433322222221 1 1257888888865441 111 1122334555557777666666
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+.+ ++++..++.+++||+|...+.+.... ....+++++++++.++|+++|++.+.||++.+++++.++.
T Consensus 151 ~~~-----~~~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 HQA-----IGYPPKKIVVIPNGVDTERFSPDLDA------RARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred HHH-----cCCChhheeEeCCCcCHHhcCCcccc------hHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 553 36777889999999998877654322 3456788999889999999999999999999999999987
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH-hcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
+ +.++++|+++|.+ +....++.... +.++.++|.++|..+++..+|+.||++++||. .|++|+++
T Consensus 220 ~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 K-------KFPNARLLLVGDG-----PDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred H-------hCCCeEEEEecCC-----cchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 6 5689999999998 34555566665 78888999999999999999999999999999 89999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
+|||++|+||| +++.|+..|++.+ +|++++++| +++++++|.+++++++.+.++++++++.+.++|||+
T Consensus 286 ~Ea~a~g~PvI-------~~~~~~~~e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 354 (365)
T cd03807 286 LEAMACGLPVV-------ATDVGDNAELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIE 354 (365)
T ss_pred HHHHhcCCCEE-------EcCCCChHHHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999 9999999999966 899999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011779 456 HMAERIAVVLK 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
++++++.++|+
T Consensus 355 ~~~~~~~~~y~ 365 (365)
T cd03807 355 AMVEAYEELYR 365 (365)
T ss_pred HHHHHHHHHhC
Confidence 99999999884
|
WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. |
| >cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.72 Aligned_cols=363 Identities=20% Similarity=0.169 Sum_probs=264.6
Q ss_pred EEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh------------------hhhhhcC
Q 011779 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------------------HKMWDRG 133 (477)
Q Consensus 76 ~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------------------~~~~~~g 133 (477)
||++++++..| ||...++..|+++|+++||+|.|+++..+........... ......|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 58999988554 9999999999999999999999999766543221100000 0011235
Q ss_pred cEEEeccchh------------------------------hHHH--hcCCcEEEEcCcchhhHHHHHhhhCC--Cccccc
Q 011779 134 VQVISAKGQE------------------------------TINT--ALKADLIVLNTAVAGKWLDAVLKEDV--PRVLPN 179 (477)
Q Consensus 134 ~~v~~~~~~~------------------------------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (477)
++++.+.... .+.. ..+||+||+|....+.....+..... .....+
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 5554331110 1112 26899999998655443332222210 012368
Q ss_pred eeeeeeeccccc-chh--------------------------hHhhcccccccceeeehhhHHHHHHH-----hHhhhcc
Q 011779 180 VLWWIHEMRGHY-FKL--------------------------DYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRI 227 (477)
Q Consensus 180 ~i~~~h~~~~~~-~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~ 227 (477)
+++++|+..... +.. .....+..++.+++.|....+.+.+. +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999864211 000 11123456788888888887766531 1112233
Q ss_pred CCCCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCC--CCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 228 KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 228 ~~~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~--~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
...++.+|+||+|.+.|.+...+. .+...+..+++++|++ ++.++|+++||+.++||++.+++++.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 457899999999999887754332 1234467789999985 788999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEc-ccc-CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKT-LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~-g~~-~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ .+++|+++|+|.. ++.+.++++++++ .+++.+. |.. +.+..+|+.||++++||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 865 4599999999842 4567778777765 4677765 444 446789999999999999 99999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCC------ceeeecCCCCCHHHHHHHHHHHHh---CHHHHHHHHHH
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKR 443 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~ 443 (477)
++++|||++|+||| +++.||+.|++.++. +|++++++| +++++++|.++++ +++.+.+++++
T Consensus 385 l~~lEAma~G~pvI-------~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~ 455 (476)
T cd03791 385 LTQMYAMRYGTVPI-------VRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRRALALYRDPEAWRKLQRN 455 (476)
T ss_pred HHHHHHhhCCCCCE-------ECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999 999999999999987 999999998 9999999999875 67778888777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+.+ +.|||+.++++|.++|+
T Consensus 456 ~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 456 AMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred Hhc---cCCChHHHHHHHHHHHh
Confidence 654 57999999999999996
|
Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
| >TIGR02470 sucr_synth sucrose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=325.21 Aligned_cols=372 Identities=17% Similarity=0.167 Sum_probs=256.2
Q ss_pred CCccEEEEEeccC----C-------CCchhhHHHHHHHHH--------HhCCc----EEEEEecCCCCChhhH-Hhhhhh
Q 011779 72 MKSKLVLLVSHEL----S-------LSGGPLLLMELAFLL--------RGVGT----KVNWITIQKPSEEDEV-IYSLEH 127 (477)
Q Consensus 72 ~~~~~Il~v~~~~----~-------~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~~-~~~~~~ 127 (477)
.|.|+|++++... . .||...++.+++++| +++|| +|+|+|...+...... ...+..
T Consensus 253 p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~ 332 (784)
T TIGR02470 253 PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEK 332 (784)
T ss_pred CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccc
Confidence 3568999998654 2 256568999999974 68999 7889996544321100 000111
Q ss_pred hhhhcCcEEEecc--c---------h-----------------hhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccc
Q 011779 128 KMWDRGVQVISAK--G---------Q-----------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (477)
Q Consensus 128 ~~~~~g~~v~~~~--~---------~-----------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (477)
.-...++.+++.+ . . +.+.. ..+||+||+|...++... ..++.+. .
T Consensus 333 ~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva-~lla~~l---g 408 (784)
T TIGR02470 333 VYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA-SLLARKL---G 408 (784)
T ss_pred ccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH-HHHHHhc---C
Confidence 1112355554322 1 0 01111 246999999986665433 3333222 2
Q ss_pred cceeeeeeecccc-------cch---hh---------HhhcccccccceeeehhhHHHHHHHhH-----------hhh--
Q 011779 178 PNVLWWIHEMRGH-------YFK---LD---------YVKHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL-- 225 (477)
Q Consensus 178 ~~~i~~~h~~~~~-------~~~---~~---------~~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~-- 225 (477)
.+.+.+.|..... ++. .. ....+..++.+++.+..-.....+.+. ..+
T Consensus 409 VP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~v 488 (784)
T TIGR02470 409 VTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRV 488 (784)
T ss_pred CCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeee
Confidence 4666777854211 111 00 112334567777776432111111110 112
Q ss_pred --cc--CCCCeEEEecCCchhhhhhhhhhHHHH-H----------HHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHH
Q 011779 226 --RI--KMPDTYVVHLGNSKELMEVAEDNVAKR-V----------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 226 --~~--~~~~i~vi~ngvd~~~~~~~~~~~~~~-~----------~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~l 288 (477)
|+ +.+|+.+||+|+|.+.|.|........ . .+.+.++.+|+ ++++++|+++||+.+.||++.+
T Consensus 489 vnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~L 568 (784)
T TIGR02470 489 VHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGL 568 (784)
T ss_pred ecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHH
Confidence 22 557999999999999887643321110 0 12344567775 5678899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHH---
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA--- 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~--- 355 (477)
++|+.++.. ..++++|+|+|++... ...+.+++.++++++++.++|.|+|.+ .++.++|+
T Consensus 569 IeA~~~l~~-------l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA 641 (784)
T TIGR02470 569 VECYGRSPK-------LRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA 641 (784)
T ss_pred HHHHHHhHh-------hCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh
Confidence 999987643 2257899999987421 112456788899999999999999974 45566664
Q ss_pred -hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH---
Q 011779 356 -AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA--- 431 (477)
Q Consensus 356 -~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll--- 431 (477)
.+|+||+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|+++++.| +++++++|.+++
T Consensus 642 d~adVfV~PS~--~EpFGLvvLEAMAcGlPVV-------AT~~GG~~EiV~dg~tGfLVdp~D--~eaLA~aL~~ll~kl 710 (784)
T TIGR02470 642 DTKGIFVQPAL--YEAFGLTVLEAMTCGLPTF-------ATRFGGPLEIIQDGVSGFHIDPYH--GEEAAEKIVDFFEKC 710 (784)
T ss_pred ccCcEEEECCc--ccCCCHHHHHHHHcCCCEE-------EcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHh
Confidence 3579999999 9999999999999999999 999999999999999999999999 999999999876
Q ss_pred -hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 432 -THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 432 -~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.|++.+++|++++++++.++|||+.++++++++.
T Consensus 711 l~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 711 DEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999998765
|
This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria. |
| >cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=318.87 Aligned_cols=333 Identities=17% Similarity=0.219 Sum_probs=241.1
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------- 142 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~------------- 142 (477)
||||+++.++. ....|+++|.++||+|+++|........ . |++++.++..
T Consensus 1 ~il~~~~~~p~-----~~~~la~~L~~~G~~v~~~~~~~~~~~~-----------~-~v~~~~~~~~~~~~~~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFPG-----QFRHLAPALAAQGHEVVFLTEPNAAPPP-----------G-GVRVVRYRPPRGPTSGTHPYLRE 63 (396)
T ss_pred CEEEECCCCch-----hHHHHHHHHHHCCCEEEEEecCCCCCCC-----------C-CeeEEEecCCCCCCCCCCccchh
Confidence 58999988862 4678999999999999999966553211 0 4555433211
Q ss_pred ---------------hhH-HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeee------eeccccc-----ch--
Q 011779 143 ---------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI------HEMRGHY-----FK-- 193 (477)
Q Consensus 143 ---------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------h~~~~~~-----~~-- 193 (477)
..+ .+..+||+||+|......... +...+. .+++.++ |+....+ ..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l---~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
T cd03818 64 FEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFL---KDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhH---HHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchh
Confidence 011 133579999999754433221 111121 2233322 2211111 00
Q ss_pred --hh-------HhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhh
Q 011779 194 --LD-------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (477)
Q Consensus 194 --~~-------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (477)
.. ....+..++.+++.|....+.+... + ..++.+||||+|.+.|.+.+.. ....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~----~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~ 205 (396)
T cd03818 139 DALRLRNRNALILLALAQADAGVSPTRWQRSTFPAE----L---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGR 205 (396)
T ss_pred HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHh----h---ccceEEeCCCccccccCCCchh------hhcccccc
Confidence 11 1123567888888888777765432 2 2689999999999988765322 11223333
Q ss_pred CCCCCCeEEEEEee-cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHHHHHHH-hc
Q 011779 265 GVRNEDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVM-QK 335 (477)
Q Consensus 265 ~~~~~~~~il~vGr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l~~~~~-~~ 335 (477)
+++++.++|+++|| +.+.||++.+++|+.++.+ +.|+++|+|+|++... ...+.+.+.+... ++
T Consensus 206 ~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 206 VLTPGDEVITFVARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred cCCCCCeEEEEECCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 45567889999998 9999999999999999876 5689999999974210 0012333322222 22
Q ss_pred CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeee
Q 011779 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLH 413 (477)
Q Consensus 336 ~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~ 413 (477)
+ .++|+|+|++ +++..+|+.||++++||. .|++|++++||||||+||| +++.||..|++.++.+|+++
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVI-------as~~~g~~e~i~~~~~G~lv 348 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVV-------GSDTAPVREVITDGENGLLV 348 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEE-------EcCCCCchhhcccCCceEEc
Confidence 2 4799999986 789999999999999999 9999999999999999999 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 414 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 414 ~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+++| +++++++|.++++|++.+++|++++++.+.++|||+.++++|.
T Consensus 349 ~~~d--~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 349 DFFD--PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9998 9999999999999999999999999999999999999999885
|
ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II). |
| >PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=313.06 Aligned_cols=341 Identities=13% Similarity=0.139 Sum_probs=246.5
Q ss_pred cEEEEEeccCC-CCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--e----ccchhhH
Q 011779 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S----AKGQETI 145 (477)
Q Consensus 75 ~~Il~v~~~~~-~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~----~~~~~~~ 145 (477)
|||+++.+..+ .||+++++.+++++|.++ ||+|.+++.......... ...........+.+. . ......+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-KEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-HhcchhcccccchhhhhcccHHHHHHHHH
Confidence 78999998764 499999999999999999 899999986554321110 000000000011111 0 1122355
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhh-CCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKE-DVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (477)
.+..+||+||+|++....+...+.+. +.+ .+++.+.|........ .....+...+.+++.|....+.+. .
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~~~~~-~~~~~~~~~d~~i~~S~~~~~~~~-----~ 150 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANKARKKSGKQ---FKIFSWPHFSLDHKKH-AECKKITCADYHLAISSGIKEQMM-----A 150 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHHHHHHhCCC---CeEEEEecCcccccch-hhhhhhhcCCEEEEcCHHHHHHHH-----H
Confidence 67789999999986554332222221 222 2345555643211111 111224677888888888777654 3
Q ss_pred hccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhh
Q 011779 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++++.+++.+||||+|.+.+...... ..++++++++||+.. .||++.+++++.++.
T Consensus 151 ~~~~~~ki~vi~N~id~~~~~~~~~~----------------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------ 208 (359)
T PRK09922 151 RGISAQRISVIYNPVEIKTIIIPPPE----------------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------ 208 (359)
T ss_pred cCCCHHHEEEEcCCCCHHHccCCCcc----------------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC------
Confidence 46777889999999996644321100 135688999999964 699999999998762
Q ss_pred ccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC----CHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~----~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
++++|+++|+| +..+.+++++++++++++|.|+|+++ ++..+|+.+|++|+||. .||||++++||
T Consensus 209 ----~~~~l~ivG~g-----~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEA 277 (359)
T PRK09922 209 ----GEWQLHIIGDG-----SDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEA 277 (359)
T ss_pred ----CCeEEEEEeCC-----ccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHH
Confidence 47999999999 67888999999999999999999864 46777888999999999 99999999999
Q ss_pred HHcCCCEEeecccccccc-CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 379 MAFQLPVLLQKCLYQGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~-~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
||||+||| +++ .||..|++.++.+|++++++| +++++++|.++++|++.+. .++......+|+.+.+
T Consensus 278 ma~G~Pvv-------~s~~~~g~~eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 345 (359)
T PRK09922 278 MSYGIPCI-------SSDCMSGPRDIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLY 345 (359)
T ss_pred HHcCCCEE-------EeCCCCChHHHccCCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHH
Confidence 99999999 999 899999999999999999998 9999999999999987541 2233334466888999
Q ss_pred HHHHHHHHHHHHh
Q 011779 458 AERIAVVLKEVLK 470 (477)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (477)
.+++.++|..+.+
T Consensus 346 ~~~~~~~~~~~~~ 358 (359)
T PRK09922 346 FKNLNNALFSKLQ 358 (359)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
|
|
| >cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=308.77 Aligned_cols=329 Identities=17% Similarity=0.187 Sum_probs=252.0
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----------hhh
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QET 144 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----------~~~ 144 (477)
||+++++.+..||+++++.+++++|.+.||+|++++....... ........++.++.... ...
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGD------YDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcc------hHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 6899999988899999999999999999999999996654321 12233444565543211 123
Q ss_pred HHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--hh-h-----HhhcccccccceeeehhhHHH
Q 011779 145 INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KL-D-----YVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~-~-----~~~~~~~~~~~~~~s~~~~~~ 216 (477)
+.+..+||+||+|+...........+. .. .+.++.+.|....... .. . .......++.+++.+....+.
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKK-AG--VKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKW 151 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhh-CC--CCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHH
Confidence 345679999999986543333322222 11 1344566676432211 11 1 122345667778888777766
Q ss_pred HHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
+... ....++.+||||+|.+.+.+.... ++. +++.+...++++|+++||+.++||++.+++++..+.
T Consensus 152 ~~~~------~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 152 LFGK------VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred HHhC------CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 5432 356789999999999877654322 122 566777788999999999999999999999999997
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
+ +.++++++|+|+| +..+.+++.++++++.++|.|+|+.+++.++|+.||++|+||. .|+||++++
T Consensus 219 ~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~l 284 (358)
T cd03812 219 K-------KNPNAKLLLVGDG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLI 284 (358)
T ss_pred H-------hCCCeEEEEEeCC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHH
Confidence 6 6689999999999 6788899999999999999999999999999999999999999 899999999
Q ss_pred HHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
|||++|+||| +++.||..|++.+ ..|++..+++ +++++++|.++++|++.++.++..+......
T Consensus 285 EAma~G~PvI-------~s~~~~~~~~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 285 EAQASGLPCI-------LSDTITKEVDLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLDA 348 (358)
T ss_pred HHHHhCCCEE-------EEcCCchhhhhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccchh
Confidence 9999999999 9999999999988 4666666666 8999999999999999999998888775544
|
capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1). |
| >cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=310.53 Aligned_cols=331 Identities=20% Similarity=0.215 Sum_probs=255.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE-----------------e
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-----------------S 138 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~-----------------~ 138 (477)
+|+++.+.+.++ +++++.++++.|. |++|++++......... .....++..+ .
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAPL-------GALAVRLADLAGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCCC-------cccceeeeecccchhHHHHHHHHhcccc
Confidence 477888777665 7899999999995 78888887543322110 0001111111 1
Q ss_pred ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccc
Q 011779 139 AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGA 206 (477)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~ 206 (477)
......+.+..+||+||+|....+.....+.+. ...+++++.|+...... .......++.++.+
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 146 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALF 146 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEE
Confidence 112233456789999999975544433332222 22567888886432111 11223344677888
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.|....+.+.+ ++++..++.+++||+|.+.+.+... ..++.+++++|++.+.||++
T Consensus 147 i~~s~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~ 204 (367)
T cd05844 147 IAVSQFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPL 204 (367)
T ss_pred EECCHHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChH
Confidence 8888887776653 3677788999999999887754321 14567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+..+.+ +.++++|+++|+| ++.++++++++++++.++|+|+|++ +++..+|+.||++++||
T Consensus 205 ~li~a~~~l~~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps 272 (367)
T cd05844 205 LLLEAFARLAR-------RVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPS 272 (367)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECc
Confidence 99999999876 5689999999998 7788899999999999999999986 77999999999999999
Q ss_pred CC----CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 365 QA----WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 365 ~~----~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.. ..||||++++|||++|+||| +++.++..|++.++.+|++++++| +++++++|.++++|++.+++|
T Consensus 273 ~~~~~~~~E~~~~~~~EA~a~G~PvI-------~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~ 343 (367)
T cd05844 273 VTAPSGDAEGLPVVLLEAQASGVPVV-------ATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARM 343 (367)
T ss_pred ccCCCCCccCCchHHHHHHHcCCCEE-------EeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHH
Confidence 62 14999999999999999999 999999999999999999999888 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
++++++.+.++|||+.+++++.+
T Consensus 344 ~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 344 GAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999999999999999875
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=291.17 Aligned_cols=342 Identities=20% Similarity=0.186 Sum_probs=268.6
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------------- 139 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-------------- 139 (477)
+|+++++.+-| ||.+.+++.|++.|.+.||.|.++|-..+.. ..-.....|.+++..
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r-------~girylt~glkVyylp~~v~~n~tT~ptv 74 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNR-------VGIRYLTNGLKVYYLPAVVGYNQTTFPTV 74 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCc-------cceeeecCCceEEEEeeeeeecccchhhh
Confidence 68888887666 9999999999999999999999999666542 122223345555432
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch------hhHhhcccccccceee
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMID 209 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~~~~~~~~~~~ 209 (477)
+..+.+...++..+||.|++++...-..++..+. .+-+.+++-|...+..-- ....-.+...++++|.
T Consensus 75 ~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcV 152 (426)
T KOG1111|consen 75 FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICV 152 (426)
T ss_pred hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEE
Confidence 3345666667999999999887766555554433 446788999987554322 1122234678889999
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|.+..+-.. -+-.++++++.+|||.++.+.|.|.+.... +.+...++.+||+.++||+|+++
T Consensus 153 shtskentv----lr~~L~p~kvsvIPnAv~~~~f~P~~~~~~--------------S~~i~~ivv~sRLvyrKGiDll~ 214 (426)
T KOG1111|consen 153 SHTSKENTV----LRGALAPAKVSVIPNAVVTHTFTPDAADKP--------------SADIITIVVASRLVYRKGIDLLL 214 (426)
T ss_pred eecCCCceE----EEeccCHhHeeeccceeeccccccCccccC--------------CCCeeEEEEEeeeeeccchHHHH
Confidence 988876432 134578899999999999999998643311 13448899999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~ 367 (477)
+++.++++ ++|+++|+|+|+| |.+..+++..+++.++++|.++|.+ +++.+.|...|+|++||.
T Consensus 215 ~iIp~vc~-------~~p~vrfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl-- 280 (426)
T KOG1111|consen 215 EIIPSVCD-------KHPEVRFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL-- 280 (426)
T ss_pred HHHHHHHh-------cCCCeeEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH--
Confidence 99999988 8899999999999 7888899999999999999999985 889999999999999999
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
.|.||++++|||+||+||| +|++||++|++-++ .-++..++ ++++++++++.+..-. ..-+...++
T Consensus 281 TEafc~~ivEAaScGL~VV-------sTrVGGIpeVLP~d-~i~~~~~~---~~dl~~~v~~ai~~~~---~~p~~~h~~ 346 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVV-------STRVGGIPEVLPED-MITLGEPG---PDDLVGAVEKAITKLR---TLPLEFHDR 346 (426)
T ss_pred HHHHHHHHHHHHhCCCEEE-------EeecCCccccCCcc-ceeccCCC---hHHHHHHHHHHHHHhc---cCchhHHHH
Confidence 9999999999999999999 99999999999554 33334443 7888888888886321 113445677
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 448 VKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 448 ~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
+++.|+|+.++++.+++|.++....
T Consensus 347 v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 347 VKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcc
Confidence 8889999999999999999987654
|
|
| >cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=312.91 Aligned_cols=337 Identities=23% Similarity=0.231 Sum_probs=255.0
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc---------------------hhhH
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------------------QETI 145 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------------------~~~~ 145 (477)
||+++++.+|+++|+++||+|+|++......... ......++.++.... ....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPP------IVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRF 94 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCC------ccccccceEEEecccccccCCChhhcchhHHHHHHHHHHH
Confidence 8999999999999999999999999544322110 011122444432211 0112
Q ss_pred HHhc--CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch--------------hhHhhcccccccceee
Q 011779 146 NTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------------LDYVKHLPLVAGAMID 209 (477)
Q Consensus 146 ~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--------------~~~~~~~~~~~~~~~~ 209 (477)
.+.. +||+||+|....+.....+.+. ...+++++.|........ ......+..++.+++.
T Consensus 95 ~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 170 (398)
T cd03800 95 LRREGGRPDLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIAS 170 (398)
T ss_pred HHhcCCCccEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEc
Confidence 2334 9999999975444332222211 124677788875321110 0112344577788888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
|....+.+.+ .++.+..++.+||||+|.+.+.+.... ...++.++.+.++++|+++||+.+.||++.++
T Consensus 171 s~~~~~~~~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll 239 (398)
T cd03800 171 TPQEAEELYS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLDPRKGIDTLI 239 (398)
T ss_pred CHHHHHHHHH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccccccCHHHHH
Confidence 8777666554 444455679999999999877654322 12255566667889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchH-HHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~-~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~ 366 (477)
+++..+.+ +.++++|+++|++.....+ +...++++++++++.++|.|+|++ +++..+|+.||++++||.
T Consensus 240 ~a~~~l~~-------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~- 311 (398)
T cd03800 240 RAYAELPE-------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL- 311 (398)
T ss_pred HHHHHHHH-------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc-
Confidence 99999876 4578999999998543222 345678888999998999999996 689999999999999999
Q ss_pred CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
.|+||++++|||++|+||| +++.+|..|++.++++|++++++| +++++++|.+++++++.+++|++++++
T Consensus 312 -~e~~~~~l~Ea~a~G~Pvi-------~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~a~~ 381 (398)
T cd03800 312 -YEPFGLTALEAMACGLPVV-------ATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSRAGLR 381 (398)
T ss_pred -ccccCcHHHHHHhcCCCEE-------ECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988 999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIA 462 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~ 462 (477)
.++++|||+.++++|+
T Consensus 382 ~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 382 RARARYTWERVAARLL 397 (398)
T ss_pred HHHHhCCHHHHHHHHh
Confidence 9999999999999876
|
The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. |
| >PLN02949 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.03 Aligned_cols=352 Identities=16% Similarity=0.149 Sum_probs=255.1
Q ss_pred ccEEEEEeccCCCC-chhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCc------EEEecc--ch
Q 011779 74 SKLVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISAK--GQ 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~------~v~~~~--~~ 142 (477)
+++|+|++|+.+.| |+|+.+.+.+.+|++.|+ +|+++|.+.+...+.. +.......++ .++.++ .+
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~---l~~~~~~~~i~~~~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSL---AARARDRFGVELLSPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHH---HHHHHhhcceecCCCceEEEeccccc
Confidence 46899999999885 999999999999999998 8888886654433221 1111112233 112120 00
Q ss_pred ----------------hhH------HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------
Q 011779 143 ----------------ETI------NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------- 191 (477)
Q Consensus 143 ----------------~~~------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------- 191 (477)
+.+ .....| .|++.+......+..+... ..++++++|......
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p-~v~vDt~~~~~~~pl~~~~-----~~~v~~yvH~p~~~~dm~~~v~~~ 183 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTP-LYFFDTSGYAFTYPLARLF-----GCKVVCYTHYPTISSDMISRVRDR 183 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCC-CEEEeCCCcccHHHHHHhc-----CCcEEEEEeCCcchHHHHHHHhhc
Confidence 111 111344 5777664422222222211 257889999542110
Q ss_pred ------------------chhhHhh--------cccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhh
Q 011779 192 ------------------FKLDYVK--------HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 245 (477)
Q Consensus 192 ------------------~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~ 245 (477)
.+..+++ ....++.++++|..+.+.+.+ .++. ..++.+++||+|.+.+.
T Consensus 184 ~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~ 258 (463)
T PLN02949 184 SSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQ 258 (463)
T ss_pred ccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHcc
Confidence 0011111 125677888998888877754 2333 35789999999987553
Q ss_pred hhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-chHH
Q 011779 246 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKF 324 (477)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~ 324 (477)
..+.. .++++..++++||+.++||++.+|+|++++.+++.+ +.++++|+|+|++... +.++
T Consensus 259 ~~~~~---------------~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~ 320 (463)
T PLN02949 259 ALPLE---------------RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEER 320 (463)
T ss_pred cCCcc---------------ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHH
Confidence 21110 013456889999999999999999999998764332 3478999999997432 2356
Q ss_pred HHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce-
Q 011779 325 ESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT- 401 (477)
Q Consensus 325 ~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~- 401 (477)
.+++++++++++++++|.|+|+. +++..+|+.||++++||. .|+||++++|||++|+||| +++.||..
T Consensus 321 ~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVI-------a~~~gGp~~ 391 (463)
T PLN02949 321 LQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPI-------AHNSAGPKM 391 (463)
T ss_pred HHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEE-------EeCCCCCcc
Confidence 78899999999999999999986 789999999999999998 9999999999999999999 99999974
Q ss_pred EEeec---CCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 402 EIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 402 e~v~~---~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
|++.+ +.+|++++ | +++++++|.++++ +++.+++|++++++.+ ++|||+++++++.+.|+++++.
T Consensus 392 eIV~~~~~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 392 DIVLDEDGQQTGFLAT--T--VEEYADAILEVLRMRETERLEIAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred eeeecCCCCcccccCC--C--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 78765 67899974 5 9999999999998 6888999999999998 6699999999999999998764
|
|
| >cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=300.95 Aligned_cols=334 Identities=21% Similarity=0.192 Sum_probs=260.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE-------ec---cchhhH
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-------SA---KGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~-------~~---~~~~~~ 145 (477)
|||++++.++++ +++++.++++.|.++||+|++++...+...... ......+..+. .. ......
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVH-----PEDRAELARTRYLARSLALLAQALVLARE 74 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCccccccc-----ccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 599999988665 789999999999999999999996544321100 00000000000 00 011122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh--hHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL--DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
.+..++|+||+|.......+........ ..++++++|......... .....++.++.+++.+....+.+.+
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~---- 147 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR---- 147 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----
Confidence 3457999999998644333333222211 256777888654332222 4556667888999988888877665
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
.++.+..++.++|||+|.+.+.+.. .....+++.|+++|++.+.||++.+++++.++.+
T Consensus 148 ~~~~~~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~------ 206 (355)
T cd03799 148 LLGCDPDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD------ 206 (355)
T ss_pred hcCCCcccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh------
Confidence 3467778999999999988775432 0112567889999999999999999999999876
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCC------CcccHHH
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRIT 375 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~------E~~g~~~ 375 (477)
+.++++|+++|.+ +..+.+++.++++++.++|.|.|+. +++..+|+.||++++||. . |+||+++
T Consensus 207 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~ 278 (355)
T cd03799 207 -RGIDFRLDIVGDG-----PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVL 278 (355)
T ss_pred -cCCCeEEEEEECC-----ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHH
Confidence 5579999999998 5678889999999999999999997 789999999999999999 7 9999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
+|||++|+||| +++.|+..+++.++.+|++++++| +++++++|.+++++++.+.++++++++.++++|||+
T Consensus 279 ~Ea~a~G~Pvi-------~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~ 349 (355)
T cd03799 279 MEAMAMGLPVI-------STDVSGIPELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIR 349 (355)
T ss_pred HHHHHcCCCEE-------ecCCCCcchhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999 999999999999998999999988 999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011779 456 HMAER 460 (477)
Q Consensus 456 ~~~~~ 460 (477)
.++++
T Consensus 350 ~~~~~ 354 (355)
T cd03799 350 KQAAR 354 (355)
T ss_pred HHhhc
Confidence 99875
|
amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. |
| >cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=305.14 Aligned_cols=326 Identities=21% Similarity=0.214 Sum_probs=248.7
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
|||++++.....||+++++..++++|.++||+|++++.... .........+||+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 78999998877799999999999999999999999995533 11223446799999
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-----------------------------h-hHh---hcc-
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------------------L-DYV---KHL- 200 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----------------------------~-~~~---~~~- 200 (477)
|+|......+......... ...++++++|+....... . .+. ..+
T Consensus 56 h~~~~~~~~~~~~~~~~~~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKLL--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWA 133 (365)
T ss_pred EEEccccCccCHHHHHHHH--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 9987433222111111111 125788888875321100 0 000 001
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
...+.+++.+....+.+. ..+.++..++.++|||+|.+.+.+.. +...++.+++++++.++++.|+..
T Consensus 134 ~~~~~~v~~s~~~~~~~~----~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~ 201 (365)
T cd03825 134 DLNLTIVAPSRWLADCAR----SSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGG 201 (365)
T ss_pred cCCcEEEehhHHHHHHHH----hccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCC
Confidence 122334555555444443 34446778999999999998775432 345677788888888888887776
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC---CHHHHHH
Q 011779 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLA 355 (477)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~---~l~~~~~ 355 (477)
. .||++.+++++..+.+. ..++++++++|++. .... .++.++|.++|+.. ++..+|+
T Consensus 202 ~~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~-----~~~~-------~~~~~~v~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 202 TDPRKGFDELIEALKRLAER------WKDDIELVVFGASD-----PEIP-------PDLPFPVHYLGSLNDDESLALIYS 263 (365)
T ss_pred CccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCc-----hhhh-------ccCCCceEecCCcCCHHHHHHHHH
Confidence 5 89999999999988641 14789999999983 2211 14557899999875 5889999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.||++++||. .|+||++++|||++|+||| +++.||..|++.++.+|++++..| ++++++++.+++++++
T Consensus 264 ~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI-------~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 264 AADVFVVPSL--QENFPNTAIEALACGTPVV-------AFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPD 332 (365)
T ss_pred hCCEEEeccc--cccccHHHHHHHhcCCCEE-------EecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHH
Confidence 9999999999 9999999999999999999 999999999999988999999988 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.+.++++++++.+.++|||+.++++|.++|+++
T Consensus 333 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 333 EREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999863
|
wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis. |
| >cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=300.70 Aligned_cols=348 Identities=20% Similarity=0.181 Sum_probs=251.3
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE------eccchhhHHHh
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI------SAKGQETINTA 148 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~------~~~~~~~~~~~ 148 (477)
||+|+++..+ .||.++++.+|+++|.+.||+|++++............ ...+.... .........+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGG------EQEVVRVIVLDNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCC------cccceeeeecCCchhHHHHHHHHhh
Confidence 6899998877 49999999999999999999999998544332110000 00011111 11122345567
Q ss_pred cCCcEEEEcCcc--hhhHHHHHhhhCCCccccceeeeeeeccccc----chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 149 LKADLIVLNTAV--AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 149 ~~~DiV~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.+||+||++... ..................++++++|+..... ........++.++.+++.| .+...+...
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~~ 151 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALLL 151 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHHh
Confidence 899999997621 1111111111111112257889999862111 1223344567888899886 222222211
Q ss_pred hhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
.. ...++.++|||++...+..... .++...+.++++++++|++.+.||++.+++|+.++.+
T Consensus 152 ~~---~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~----- 212 (366)
T cd03822 152 RA---YPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA----- 212 (366)
T ss_pred hc---CCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-----
Confidence 11 1468999999999876543221 1334445678999999999999999999999999876
Q ss_pred ccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc-c--CCHHHHHHhcCEEEEcCCCCCC--cccHHHHH
Q 011779 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITIE 377 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~-~--~~l~~~~~~aDv~v~pS~~~~E--~~g~~~lE 377 (477)
+.++++|+++|++............++++++++.++|.|+|. . +++..+|+.||++++||. .| ++|++++|
T Consensus 213 --~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~E 288 (366)
T cd03822 213 --KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAY 288 (366)
T ss_pred --hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHH
Confidence 568999999999853221111111134788899999999986 3 789999999999999999 89 99999999
Q ss_pred HHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 011779 378 AMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 457 (477)
Q Consensus 378 Ama~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~ 457 (477)
||++|+||| +++.|+ .+.+.++.+|++++++| +++++++|..+++|++.+.+|++++++.+++ |||+.+
T Consensus 289 a~a~G~PvI-------~~~~~~-~~~i~~~~~g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~ 357 (366)
T cd03822 289 AIGFGKPVI-------STPVGH-AEEVLDGGTGLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERV 357 (366)
T ss_pred HHHcCCCEE-------ecCCCC-hheeeeCCCcEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHH
Confidence 999999999 999999 77777788999999998 9999999999999999999999999999977 999999
Q ss_pred HHHHHHHHH
Q 011779 458 AERIAVVLK 466 (477)
Q Consensus 458 ~~~~~~~~~ 466 (477)
++++.++|+
T Consensus 358 ~~~~~~~~~ 366 (366)
T cd03822 358 AERYLRLLA 366 (366)
T ss_pred HHHHHHHhC
Confidence 999999874
|
ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides. |
| >PLN02846 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=300.20 Aligned_cols=337 Identities=12% Similarity=0.090 Sum_probs=235.2
Q ss_pred CccEEEEEeccCCC--CchhhHHHHHHHHHHhCC-cEEEEEecCCCCChhhH--------------Hhhhh----hh-hh
Q 011779 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEV--------------IYSLE----HK-MW 130 (477)
Q Consensus 73 ~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~--------------~~~~~----~~-~~ 130 (477)
++|||++++..+.| +|.......++.+|+++| |+|+|+.+..+..+... ..... .. ..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 56999999998877 898889999999999999 89999997654211000 00000 00 00
Q ss_pred hcCcEE--Eec------------cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh--
Q 011779 131 DRGVQV--ISA------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-- 194 (477)
Q Consensus 131 ~~g~~v--~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-- 194 (477)
..++++ ++- ......++..+||+||++++....+.........+ . ..++.++|+...+|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-CcEEEEECCChHHHHHHhc
Confidence 011111 111 11335556789999999998887775222222111 1 23677888844333211
Q ss_pred ------hHh----hcc--cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 195 ------DYV----KHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 195 ------~~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
... .++ ...+.+++.|....+ +. ..+....+|||.+.|.+.... .++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~~---------~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKLK---------LEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCccc---------Hhh
Confidence 011 111 124555666643322 11 124445689999988765321 222
Q ss_pred hhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 263 SLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 263 ~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
..+ ..+ .++++|+||+.++||++.+++|++++.+ ..++++|+|+|+| |.+++++++++++++..+
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~-------~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQK-------ELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHh-------hCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEE
Confidence 222 233 3468899999999999999999998866 5588999999999 789999999999988644
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+ |.|. .+..++|+.+|+||+||. .|+||++++||||||+||| +++.++ .+++.++.+|++++ | .
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVV-------a~~~~~-~~~v~~~~ng~~~~--~--~ 350 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVV-------CANHPS-NEFFKQFPNCRTYD--D--G 350 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEE-------EecCCC-cceeecCCceEecC--C--H
Confidence 4 7786 566689999999999999 9999999999999999999 999987 59999999999984 5 8
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++++++.+++.++. +.++.+++ +.|||+..+++++++|+-
T Consensus 351 ~~~a~ai~~~l~~~~--~~~~~~a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 351 KGFVRATLKALAEEP--APLTDAQR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHHHHHHHHccCc--hhHHHHHH----HhCCHHHHHHHHHHHhcc
Confidence 999999999998532 23333333 479999999999999864
|
|
| >cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=298.96 Aligned_cols=332 Identities=26% Similarity=0.259 Sum_probs=252.2
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
|||++++.++| ||.++++.+++++|.++||+|++++......... ....+.++.....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD--------EERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh--------hhccCceEEEeecccccccccccHH
Confidence 68999988776 8899999999999999999999999665432211 1111222221110
Q ss_pred -hhhH-HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeeehhh
Q 011779 142 -QETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 142 -~~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~ 213 (477)
...+ ....+||+||+|.+............ ...+.+.++|+..... +.......+..++.+++.|...
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 0111 23678999999986554333322222 1246677788632111 1222233556778888888777
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
.+.+.. .... ..++.++|||+|.+.+.+.... +. .....+.+.++|+++||+.+.||++.+++|+.
T Consensus 149 ~~~~~~----~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 149 AETSPV----LRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred HHHHHH----hcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHH
Confidence 765543 2222 3689999999999877654221 00 22334467789999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~ 371 (477)
++ .+++|+|+|+| +....+++.+++.++.++|+|+|++ +++..+|+.||++++||....|+|
T Consensus 215 ~l-----------~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 215 AL-----------PDAPLVIVGEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred hc-----------cCcEEEEEeCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 87 37999999999 6788899999889999999999997 568999999999999996336999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 450 (477)
|++++|||++|+||| +++.++..+.+.+ +.+|++++++| +++++++|.++++|++.+++|++++++.+++
T Consensus 279 g~~~~Ea~~~g~Pvi-------~~~~~~~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 279 GIVLLEAMAFGKPVI-------STEIGTGGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred chHHHHHHHcCCCEE-------ecCCCCchhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999998876 88999999988 9999999999999999999999999999999
Q ss_pred hcCHHHHH
Q 011779 451 IFQEHHMA 458 (477)
Q Consensus 451 ~fs~~~~~ 458 (477)
+|||+.++
T Consensus 350 ~~s~~~~~ 357 (357)
T cd03795 350 EFTADRMV 357 (357)
T ss_pred hcchHhhC
Confidence 99999864
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >PLN00142 sucrose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=312.20 Aligned_cols=219 Identities=18% Similarity=0.248 Sum_probs=177.8
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHH-----------HHHHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAK-----------RVLREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~-----------~~~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+++.+||+|+|...|.|....... .......++.+|+ ++++++|+++||+.+.||++.+++|+.++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 5689999999999988754321110 0011223456675 45667899999999999999999999987
Q ss_pred HHHHHhhccCcCceEEEEEecCCC-c---ch---HHHHHHHHHHHhcCCCCcEEEcccc------CCHHHHHH-hcCEEE
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMN-A---QT---KFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLV 361 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~-~---~~---~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~~~~~-~aDv~v 361 (477)
.+ ..++++|+|+|+|.+ . +. ...+++.++++++++.++|.|+|.+ .++..+++ ++|+||
T Consensus 599 ~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfV 671 (815)
T PLN00142 599 KR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFV 671 (815)
T ss_pred HH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEE
Confidence 54 346899999998721 1 11 1235678889999999999999863 23555555 479999
Q ss_pred EcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH----hCHHHH
Q 011779 362 QNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----THVERR 437 (477)
Q Consensus 362 ~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~~~~~ 437 (477)
+||. +|+||++++|||+||+||| +|+.||+.|+|.++.+|++++++| +++++++|.+++ .|++.+
T Consensus 672 lPS~--~EgFGLvvLEAMA~GlPVV-------ATdvGG~~EIV~dG~tG~LV~P~D--~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 672 QPAL--YEAFGLTVVEAMTCGLPTF-------ATCQGGPAEIIVDGVSGFHIDPYH--GDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred eCCc--ccCCCHHHHHHHHcCCCEE-------EcCCCCHHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHHHhcCCHHHH
Confidence 9999 9999999999999999999 999999999999999999999999 999999987654 699999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++|+++|++++.++|||+.++++++++.
T Consensus 741 ~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 741 NKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999998765
|
|
| >PRK10125 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=302.31 Aligned_cols=334 Identities=13% Similarity=0.079 Sum_probs=224.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh---h--------hhhhh-----hhcCcEE-E
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY---S--------LEHKM-----WDRGVQV-I 137 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~---~--------~~~~~-----~~~g~~v-~ 137 (477)
||||++......||+++.+.+|++.|.++||+|.++............. . ..... +..+... .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 7999999999999999999999999999999999998554332210000 0 00000 0000000 0
Q ss_pred eccch-hhHHHhcCCcEEEEcCcchh---hH-HHHHh-hhCCCccccceeeeeeeccccc--------------------
Q 011779 138 SAKGQ-ETINTALKADLIVLNTAVAG---KW-LDAVL-KEDVPRVLPNVLWWIHEMRGHY-------------------- 191 (477)
Q Consensus 138 ~~~~~-~~~~~~~~~DiV~~~~~~~~---~~-~~~~~-~~~~~~~~~~~i~~~h~~~~~~-------------------- 191 (477)
..... +.+.+..+|||||+|..... .. +.... .........|++|+.|+.....
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 11111 22325779999999985442 21 11110 0111223368999999976331
Q ss_pred ----chh--------hH-------hhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHH
Q 011779 192 ----FKL--------DY-------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (477)
Q Consensus 192 ----~~~--------~~-------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (477)
+.. .+ ...+...+.+++.|....+.+.. .++ ..++.+||||+|.+.+.+.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~----~~~--~~~i~vI~NGid~~~~~~~~~~-- 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNS----LYG--PGRCRIINNGIDMATEAILAEL-- 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHH----HcC--CCCEEEeCCCcCcccccccccc--
Confidence 100 00 00011223456666666655432 333 4689999999997543221110
Q ss_pred HHHHHHHHHHhhCCCCCCeEEEEEeec--ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHH
Q 011779 253 KRVLREHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (477)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~il~vGrl--~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (477)
...+ .++++.+|+++|+. .+.||++.+++|+..+. ++++|+++|+|++ ..
T Consensus 233 -----~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~-----~~---- 284 (405)
T PRK10125 233 -----PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSP-----FT---- 284 (405)
T ss_pred -----cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCc-----cc----
Confidence 0001 12566789999994 36899999999998752 5799999998731 10
Q ss_pred HHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 331 YVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 331 ~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
.++|.++|+. .++.++|++||+||+||. .|+||++++||||||+||| +|++||++|++.++
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVV-------at~~gG~~Eiv~~~ 348 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVI-------ATHSDAAREVLQKS 348 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEE-------EeCCCChHHhEeCC
Confidence 1468888864 568999999999999999 9999999999999999999 99999999999775
Q ss_pred CceeeecCCCCCHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 408 TTGLLHPVGKEGITPLAKNIVKLATHVERRLT----MGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 408 ~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~----~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+|++++++| +++|++.+ +++.+++ +.+++++.+.+.||++.++++|+++|+++
T Consensus 349 -~G~lv~~~d--~~~La~~~-----~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 349 -GGKTVSEEE--VLQLAQLS-----KPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred -cEEEECCCC--HHHHHhcc-----CHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999 99999854 3343333 23568888889999999999999999863
|
|
| >cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=299.23 Aligned_cols=321 Identities=16% Similarity=0.133 Sum_probs=233.2
Q ss_pred cEEEEEeccC------CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhh--cCcE---EEeccchh
Q 011779 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQ---VISAKGQE 143 (477)
Q Consensus 75 ~~Il~v~~~~------~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~--~g~~---v~~~~~~~ 143 (477)
|||+++++.+ ..||+++++.+|+++|.++||+|++++...+................ .... ........
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 7999999876 34899999999999999999999999966543211100000000000 0000 00011223
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
.+.+..+||+||+|+.....+ .... ...+++++.|+........ ........+..++.+......+..
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~--~~~~-----~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~---- 148 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP--FARP-----LPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP---- 148 (335)
T ss_pred HHHhcCCCCEEEecCcccchh--hhcc-----cCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc----
Confidence 455668999999998666554 1111 2256888999875443332 233334555666666666554332
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
..++.+||||+|.+.|.+.+ .++..++++||+.+.||++.+++++++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~~-------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFRG-------------------PKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred -----ccccEEecCCcChhhCCCCC-------------------CCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 16899999999998775421 455688999999999999999998754
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (477)
.+++|+++|+|. ..+.+.....+.. +.++|+|+|++ +++..+|+.+|++++||. +.|+||++++|||+
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHh
Confidence 578999999983 3444444444443 56899999986 557899999999999997 26999999999999
Q ss_pred cCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 381 FQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 381 ~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
||+||| +++.||..|++.++.+|+++++ +++++++|.++...+ .+++++.+.++|||+.++++
T Consensus 267 ~G~PvI-------~~~~~~~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~ 329 (335)
T cd03802 267 CGTPVI-------AFRRGAVPEVVEDGVTGFLVDS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDD 329 (335)
T ss_pred cCCCEE-------EeCCCCchhheeCCCcEEEeCC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHH
Confidence 999999 9999999999999999999974 799999999986543 24677788899999999999
Q ss_pred HHHHHH
Q 011779 461 IAVVLK 466 (477)
Q Consensus 461 ~~~~~~ 466 (477)
|.++|+
T Consensus 330 ~~~~y~ 335 (335)
T cd03802 330 YLALYR 335 (335)
T ss_pred HHHHhC
Confidence 999984
|
aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue. |
| >cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=299.09 Aligned_cols=348 Identities=19% Similarity=0.172 Sum_probs=249.6
Q ss_pred EEEEEeccCC--CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh--------hhh-hhhcCcEEEeccc-hh
Q 011779 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--------EHK-MWDRGVQVISAKG-QE 143 (477)
Q Consensus 76 ~Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--------~~~-~~~~g~~v~~~~~-~~ 143 (477)
||+++++.+. .||+++++.+++++|.+.||+|++++.............. ... ........+.... ..
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 5899998874 4888999999999999999999999965543221110000 000 0000000000000 11
Q ss_pred hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--hhh----------Hhhcccccccceeeeh
Q 011779 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD----------YVKHLPLVAGAMIDSH 211 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--~~~----------~~~~~~~~~~~~~~s~ 211 (477)
......++|+||+|+.............+. ...+++++.|+....+. ... ....+...+.+++.+.
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARK--YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHH--hCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCH
Confidence 222346899999997433222221111111 22567788887543321 000 1112233444555543
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
....... ......++.++|||+|.+.+.+.... .. |+.++.+.++++++++||+.+.||++.++++
T Consensus 159 ~~~~~~~------~~~~~~~~~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 159 QEAAEIR------RLGLKAPIAVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred HHHHHHH------hhCCcccEEEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHH
Confidence 3333222 12455789999999999877654321 11 6777778889999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.++.+ +.++++|+++|.+.. .+...++.+++++++.++|.|+|++ +++..+|+.||++++||. .|
T Consensus 225 ~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e 292 (375)
T cd03821 225 FAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SE 292 (375)
T ss_pred HHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cC
Confidence 999876 568999999998742 3556666667889999999999997 489999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
+||++++|||++|+||| +++.+|..+++.+ ..|++++.+ .++++++|.+++++++.++++++++++.+.
T Consensus 293 ~~~~~~~Eama~G~PvI-------~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 361 (375)
T cd03821 293 NFGIVVAEALACGTPVV-------TTDKVPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVE 361 (375)
T ss_pred CCCcHHHHHHhcCCCEE-------EcCCCCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999988 788888754 699999999999999999999999999989
Q ss_pred HhcCHHHHHHHHH
Q 011779 450 EIFQEHHMAERIA 462 (477)
Q Consensus 450 ~~fs~~~~~~~~~ 462 (477)
++|+|+.+++++.
T Consensus 362 ~~~s~~~~~~~~~ 374 (375)
T cd03821 362 ERFSWTAIAQQLL 374 (375)
T ss_pred HhcCHHHHHHHhh
Confidence 9999999999875
|
Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide. |
| >cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=292.54 Aligned_cols=325 Identities=22% Similarity=0.265 Sum_probs=252.4
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe---------------c
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS---------------A 139 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~---------------~ 139 (477)
||+++++.+. .||+++.+..++++|.+.||+|++++........ ... ..++.+.. .
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 72 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF---YEL-----DPKIKVIDLGDKRDSKLLARFKKL 72 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc---ccc-----CCccceeecccccccchhccccch
Confidence 5889998887 6999999999999999999999999965543000 000 11222211 1
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhh-----HhhcccccccceeeehhhH
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~ 214 (477)
.....+.+..+||+||++......++.. ...+. .+++.+.|.......... ....++.++.+++.+....
T Consensus 73 ~~~~~~l~~~~~d~i~~~~~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~ 147 (348)
T cd03820 73 RRLRKLLKNNKPDVVISFLTSLLTFLAS-LGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDR 147 (348)
T ss_pred HHHHHhhcccCCCEEEEcCchHHHHHHH-Hhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHH
Confidence 2223455668999999998662222222 22211 367777887643332211 3345678888888888776
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
.. .......++.++|||++...+... .+.+++.++++|++.+.||++.+++++.+
T Consensus 148 ~~-------~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~ 202 (348)
T cd03820 148 AL-------YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAK 202 (348)
T ss_pred HH-------hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHH
Confidence 11 223466789999999998765432 12567899999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.+ ..++++|+|+|++ +....+++.+++.++.++|.+.|..+++..+|+.||++++||. .|++|++
T Consensus 203 l~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~ 268 (348)
T cd03820 203 IAK-------KHPDWKLRIVGDG-----PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMV 268 (348)
T ss_pred HHh-------cCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHH
Confidence 876 5689999999998 5677788889999999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCC-ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg-~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
++|||++|+||| +++.++ ..+++.++.+|+++++.| +++++++|.++++|++.+++|++++++.+ +.|+
T Consensus 269 ~~Ea~a~G~Pvi-------~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~ 338 (348)
T cd03820 269 LLEAMAFGLPVI-------SFDCPTGPSEIIEDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARESA-ERFS 338 (348)
T ss_pred HHHHHHcCCCEE-------EecCCCchHhhhccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhC
Confidence 999999999999 998754 567777777999999988 99999999999999999999999997655 7799
Q ss_pred HHHHHHHHH
Q 011779 454 EHHMAERIA 462 (477)
Q Consensus 454 ~~~~~~~~~ 462 (477)
|++++++|.
T Consensus 339 ~~~~~~~~~ 347 (348)
T cd03820 339 IENIIKQWE 347 (348)
T ss_pred HHHHHHHhc
Confidence 999999875
|
AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran. |
| >cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=309.68 Aligned_cols=276 Identities=22% Similarity=0.249 Sum_probs=226.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc--------------cchhhH--------hhcccccccc
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--------------YFKLDY--------VKHLPLVAGA 206 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------~~~~~~--------~~~~~~~~~~ 206 (477)
.++|+||+|+.....++....+.. ...|++++.|+.... ..+..+ ...++.++.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 478999999864443433333322 225788999975211 001111 1234577788
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.+....+... .+|.+.+|+.+||||+|.+.|.+.... ..+++.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 888777665433 567788899999999999887654321 1235778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~ 366 (477)
.+++|++.+.+ +.|+++|+|+|+|+ .+..+.++++++++++++.++|+|+| .+++.++|+.+|++|+||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTD-EDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCC-cChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999999876 56899999999884 23357889999999999999999999 7899999999999999999
Q ss_pred CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec------CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~------~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.|+||++++|||+||+||| +|+.||..|++.+ |.+|++++++| +++++++|.++++|++.+++|
T Consensus 380 -~Eg~p~~vlEAma~G~PVV-------atd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~ 449 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVV-------ATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAM 449 (475)
T ss_pred -hhcCChHHHHHHHcCCCEE-------ECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999 9999999999988 56999999998 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++.+++.|+|++++++|.++|+
T Consensus 450 ~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 450 GEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99999999999999999999999984
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=294.64 Aligned_cols=342 Identities=21% Similarity=0.171 Sum_probs=243.9
Q ss_pred EEEEEeccCCCC-chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhh---hhcCcEEEecc-c---h---
Q 011779 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKM---WDRGVQVISAK-G---Q--- 142 (477)
Q Consensus 76 ~Il~v~~~~~~g-G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~---~~~g~~v~~~~-~---~--- 142 (477)
.|.|++|+.+.| |+||++.+.+.+|.+. |++|+|+|.................+ ...++.++... . .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 588999999996 8999999999999998 89999999776554321111111111 12344432221 0 0
Q ss_pred ------------h------hHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeeccc--ccc---------
Q 011779 143 ------------E------TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRG--HYF--------- 192 (477)
Q Consensus 143 ------------~------~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~--~~~--------- 192 (477)
. ......+||+++.++.... ..+...+. ..+++.++|-... ...
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~------~~~~i~y~h~P~~~~d~l~~~~~~~~~ 155 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG------GCPVGAYVHYPTISTDMLQKVRSREAS 155 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc------CCeEEEEecCCcchHHHHHHHhhcccc
Confidence 0 1111347999988874433 22222222 1478888993200 000
Q ss_pred ----------------hh--------hHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhh
Q 011779 193 ----------------KL--------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 248 (477)
Q Consensus 193 ----------------~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~ 248 (477)
+. .+...+..++.++++|..+.+.+.+. ++. ..++.+|+||+|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~----~~~-~~~~~vi~~gvd~~~~~~~~ 230 (419)
T cd03806 156 YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL----WKR-NTKPSIVYPPCDVEELLKLP 230 (419)
T ss_pred ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH----hCc-CCCcEEEcCCCCHHHhcccc
Confidence 00 11223467788899988888777653 332 24799999999988765432
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-chHHHHH
Q 011779 249 DNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESE 327 (477)
Q Consensus 249 ~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~ 327 (477)
. ....+..+|+++||+.+.||++.+++|+.++.+..++. ..++++|+|+|++... +.++.++
T Consensus 231 ~---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~ 293 (419)
T cd03806 231 L---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVED 293 (419)
T ss_pred c---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHH
Confidence 1 01245679999999999999999999999987632110 0135999999987432 2347788
Q ss_pred HHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-eEEe
Q 011779 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIV 404 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v 404 (477)
++++++++++.++|+|+|.. +++..+|+.||++|+||. .|+||++++||||+|+||| +++.||. .|++
T Consensus 294 L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvI-------a~~~ggp~~~iv 364 (419)
T cd03806 294 LKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPL-------AHASGGPLLDIV 364 (419)
T ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEE-------EEcCCCCchhee
Confidence 99999999999999999985 789999999999999998 8999999999999999999 9999885 5788
Q ss_pred e---cCCceeeecCCCCCHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 405 V---NGTTGLLHPVGKEGITPLAKNIVKLATHVE-RRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 405 ~---~~~~G~l~~~~d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
. ++.+|++++ | +++++++|.+++++++ .++.+ .++++.+.++||++.+.+
T Consensus 365 ~~~~~g~~G~l~~--d--~~~la~ai~~ll~~~~~~~~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 365 VPWDGGPTGFLAS--T--AEEYAEAIEKILSLSEEERLRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred eccCCCCceEEeC--C--HHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhhCHHHhcc
Confidence 8 889999974 5 9999999999999654 45555 555556778999998754
|
ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. |
| >cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=296.29 Aligned_cols=342 Identities=20% Similarity=0.208 Sum_probs=251.5
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH--hhh-hhhh-hhcCcEE--EeccchhhHHH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI--YSL-EHKM-WDRGVQV--ISAKGQETINT 147 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~--~~~-~~~~-~~~g~~v--~~~~~~~~~~~ 147 (477)
||+++++.+++ ||++.++..++++|.++||+|++++........... ..+ .... ....... ..........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 58999987766 788899999999999999999999965432111000 000 0000 0001111 11122234445
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccceeeehhhHH
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s~~~~~ 215 (477)
..+||+||+++.....+........ ...+++.++|+....+. .......++.++.+++.+....+
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~ 157 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARR---LGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLAD 157 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHH---cCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHH
Confidence 6799999999754433323222221 22467777886432211 11122334567777887777766
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+.. ....++.+++||+|.+.+.+.... ...+++++ +.++++++++|++.+.||++.+++++.++
T Consensus 158 ~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l 222 (364)
T cd03814 158 ELRA-------RGFRRVRLWPRGVDTELFHPRRRD-------EALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPL 222 (364)
T ss_pred HHhc-------cCCCceeecCCCccccccCccccc-------HHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHh
Confidence 3332 234679999999999877654321 23344555 46678999999999999999999999998
Q ss_pred HHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
.+ + ++++|+++|.| ++.+.++ +..++|.|+|+ .+++..+|+.||++++||. .|+||+
T Consensus 223 ~~-------~-~~~~l~i~G~~-----~~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~ 281 (364)
T cd03814 223 RR-------R-PPVRLVIVGDG-----PARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGL 281 (364)
T ss_pred hh-------c-CCceEEEEeCC-----chHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCc
Confidence 65 4 78999999998 4455444 44579999996 4789999999999999999 999999
Q ss_pred HHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 374 ITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
+++|||++|+||| +++.++..|++.++.+|+++++.| .++++++|.+++.|++.++++++++++.+ +.|+
T Consensus 282 ~~lEa~a~g~PvI-------~~~~~~~~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~ 351 (364)
T cd03814 282 VVLEAMASGLPVV-------APDAGGPADIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRS 351 (364)
T ss_pred HHHHHHHcCCCEE-------EcCCCCchhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcC
Confidence 9999999999999 999999999999989999999988 99999999999999999999999999988 7799
Q ss_pred HHHHHHHHHHHHH
Q 011779 454 EHHMAERIAVVLK 466 (477)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (477)
|+.+++++.++|+
T Consensus 352 ~~~~~~~~~~~~~ 364 (364)
T cd03814 352 WEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=296.07 Aligned_cols=347 Identities=13% Similarity=0.066 Sum_probs=243.6
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh---------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~--------- 143 (477)
+.++|++++... .|.+.++.+++++|+++||+|+|++...+... .......|+.++.+....
T Consensus 2 ~~~~~~~~~~~~--~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGD--IGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-------DEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEecc--cCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-------HHHhcCCCEEEEECCCCccccccchHH
Confidence 356788877533 67777789999999999999999996543321 111234566665543211
Q ss_pred ----------------hHHHhcCCcEEEEcCcchh--hHHHHHhhhCCCccccceeeeeeeccccc--------------
Q 011779 144 ----------------TINTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------- 191 (477)
Q Consensus 144 ----------------~~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------- 191 (477)
.+....+||+||+|++... .+...+..... ..+++.++|+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~---~~~~V~~~h~~~~~~~~~~~~~~~~~~~~ 149 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR---RTKLIIDWHNYGYTILALKLGENHPLVRL 149 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh---CCeEEEEcCCchHHHHhcccCCCCHHHHH
Confidence 0223468999999874432 11122212111 256778888753100
Q ss_pred chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH---------
Q 011779 192 FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--------- 262 (477)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~--------- 262 (477)
+.......++.++.+++.|....+.+.+ ++.+.+++.+||||. ...|.+.+.... ...+++
T Consensus 150 ~~~~e~~~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~ 219 (415)
T cd03816 150 AKWYEKLFGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTRE 219 (415)
T ss_pred HHHHHHHHhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccccc
Confidence 0011122346788899998888877653 467889999999994 455555432211 111111
Q ss_pred ----hhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 263 ----SLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 263 ----~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
..++ +++..+++++||+.+.||++.+++|+..+.+...+. ...|+++|+|+|+| +.+++++++++++++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l 293 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKG-----PLKEKYLERIKELKL 293 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecC-----ccHHHHHHHHHHcCC
Confidence 1122 244567888999999999999999999986532110 02478999999999 678999999999999
Q ss_pred CCcEEEcccc--CCHHHHHHhcCEEEEcCCC-CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 338 QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~-~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
.+.+.+.|++ +++..+|++||+++.|+.. ..|++|++++||||||+||| +++.||..|++.++.+|++++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI-------~s~~~~~~eiv~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC-------ALDFKCIDELVKHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEE-------EeCCCCHHHHhcCCCCEEEEC
Confidence 7555556764 8999999999999975431 15889999999999999999 999999999999999999994
Q ss_pred CCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 415 VGKEGITPLAKNIVKLATH---VERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
| +++++++|.++++| ++.+++|++++++..+ ++|+...++
T Consensus 367 --d--~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~ 409 (415)
T cd03816 367 --D--SEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDR 409 (415)
T ss_pred --C--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHH
Confidence 6 99999999999999 9999999999998774 566554443
|
The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik. |
| >cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=290.61 Aligned_cols=330 Identities=16% Similarity=0.189 Sum_probs=237.6
Q ss_pred EEEEEecc-CCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------
Q 011779 76 LVLLVSHE-LSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (477)
Q Consensus 76 ~Il~v~~~-~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------- 142 (477)
||+++... +++ ||+++++.+++++|.++||+|+|++........ .....|++++..+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHH
Confidence 57888654 333 999999999999999999999999965443211 112345555433211
Q ss_pred --hhHHH----hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--ch---hh-----Hhhcccccccc
Q 011779 143 --ETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK---LD-----YVKHLPLVAGA 206 (477)
Q Consensus 143 --~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--~~---~~-----~~~~~~~~~~~ 206 (477)
..+.. ..++|+||...+....+...+.. ...++++++|+..... +. .. ....+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFLPLLRL-----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHHHHHHh-----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 11111 23444444444433222222111 1257788888753211 00 11 11234567788
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
++.|....+.+.+ .++.+ . .+||||+|...+.+ +...++.++.+++. .++++||+.+.||++
T Consensus 148 i~~s~~~~~~~~~----~~~~~--~-~~i~ngv~~~~~~~----------~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEYLKE----KYGRD--S-TYIPYGADHVVSSE----------EDEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHHHHH----hcCCC--C-eeeCCCcChhhcch----------hhhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 8888888777653 45533 2 89999999876543 12234455655544 577999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH-hcCCCCcEEEcccc--CCHHHHHHhcCEEEEc
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~p 363 (477)
.+++|++++. ++++|+++|+|+. ...+.+.+. .+++.++|+|+|++ +++..+|+.||++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999999873 3799999999842 233333333 56777899999986 6688999999999999
Q ss_pred CCCCC-CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 364 SQAWG-ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 364 S~~~~-E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
|. . |+||++++|||++|+||| +++.|+..|++.+ +|++++++| . ++++|.+++++++.+.++++
T Consensus 275 s~--~~e~~~~~~~EAma~G~PvI-------~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 275 GH--SVGGTNPSLLEAMAYGCPVL-------ASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAK 339 (363)
T ss_pred Cc--cCCCCChHHHHHHHcCCCEE-------EecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHH
Confidence 98 6 999999999999999999 9999999999955 889998765 3 99999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++.+.++|||+.++++++++|+
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999889999999999999884
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog |
| >cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=288.98 Aligned_cols=331 Identities=22% Similarity=0.267 Sum_probs=251.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------------- 141 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-------------- 141 (477)
||+++++. .||.+.++..++++|.+.||+|++++....... .....++.++..+.
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 58899887 678889999999999999999999996654421 12233444432211
Q ss_pred --hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------hhHhhcccccccceeee
Q 011779 142 --QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 142 --~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~~~~~~~~~~~~~~~~s 210 (477)
.....+..+||+||+++.....+....... . ..+++++..|+....... ......+...+.+++.|
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 146 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARL-A--GVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQN 146 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHH-c--CCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcC
Confidence 123445679999999975443322222221 1 124566777765322111 11223345667888888
Q ss_pred hhhHHHHHHHhHhhhccC-CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
....+.+.+. ...+ ..++.++++|+|.+.+.+.... .+.++++|+++|++.+.||++.++
T Consensus 147 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li 207 (359)
T cd03808 147 EDDRDLALKL----GIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELL 207 (359)
T ss_pred HHHHHHHHHh----cCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHH
Confidence 8887776643 2222 4567888999998876544320 125778999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHH-HHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~-~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~ 368 (477)
+++..+.+ +.++++|+|+|.+.. ...... .+.+.+..++|.|+|+.+++.++|+.||++++||. .
T Consensus 208 ~~~~~l~~-------~~~~~~l~i~G~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~ 273 (359)
T cd03808 208 EAARILKA-------KGPNVRLLLVGDGDE-----ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--R 273 (359)
T ss_pred HHHHHHHh-------cCCCeEEEEEcCCCc-----chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--c
Confidence 99999865 568999999999843 222222 36667777899999999999999999999999999 8
Q ss_pred CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 369 E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
|++|++++|||++|+||| +++.++..+++.++.+|++++++| +++++++|.+++.|++.++++++++++.+
T Consensus 274 e~~~~~~~Ea~~~G~Pvi-------~s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 344 (359)
T cd03808 274 EGLPRVLLEAMAMGRPVI-------ATDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRA 344 (359)
T ss_pred cCcchHHHHHHHcCCCEE-------EecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999899999999988 99999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHH
Q 011779 449 KEIFQEHHMAERIA 462 (477)
Q Consensus 449 ~~~fs~~~~~~~~~ 462 (477)
.++|+|+.+++++.
T Consensus 345 ~~~~s~~~~~~~~~ 358 (359)
T cd03808 345 EEEFDEEIVVKKLL 358 (359)
T ss_pred HHhcCHHHHHHHhh
Confidence 99999999999875
|
cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. |
| >cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=290.73 Aligned_cols=347 Identities=21% Similarity=0.285 Sum_probs=259.8
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhh-------hcCcEEEeccchhhHH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-------DRGVQVISAKGQETIN 146 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~-------~~g~~v~~~~~~~~~~ 146 (477)
||++++..++| ||++..+..++++|.+.||+|++++................... ................
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 58899988766 88889999999999999999999996554322110000000000 0000000011112335
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------------hhHhhcccccccceeeeh
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------------LDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------------~~~~~~~~~~~~~~~~s~ 211 (477)
+..+||+||++++............. ...++++++|.....+.. ......+..++.+++.+.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARK---LGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHH---cCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 66899999999875443333322222 125677888864321110 122334567788888888
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
...+.+.+ ++.+ .++.++|||+|...+.+... ...++.++.++++++|+++|++.+.||++.++++
T Consensus 158 ~~~~~~~~-----~~~~-~~~~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~ 223 (374)
T cd03817 158 KIADLLRE-----YGVK-RPIEVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRA 223 (374)
T ss_pred HHHHHHHh-----cCCC-CceEEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHH
Confidence 76666553 3433 45999999999887765432 2236667777888999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+..+.+ +.++++|+++|+| +..+.+++.++++++.++|.|+|++ +++..+|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e 289 (374)
T cd03817 224 FARLLK-------EEPDVKLVIVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TE 289 (374)
T ss_pred HHHHHH-------hCCCeEEEEEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--cc
Confidence 998876 4578999999998 6788899999999999999999986 789999999999999999 99
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
++|++++|||++|+||| +++.|+..+++.++.+|+++++.+ . +++++|.+++++++.+++|++++++.++
T Consensus 290 ~~~~~~~Ea~~~g~PvI-------~~~~~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 290 TQGLVLLEAMAAGLPVV-------AVDAPGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CcChHHHHHHHcCCcEE-------EeCCCChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999877 5 9999999999999999999999999886
Q ss_pred HhcCHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~ 467 (477)
+.+ +.+++.++|++
T Consensus 360 ~~~----~~~~~~~~~~~ 373 (374)
T cd03817 360 KFS----FAKKVEKLYEE 373 (374)
T ss_pred HHH----HHHHHHHHHhc
Confidence 644 66777777654
|
UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. |
| >cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=289.57 Aligned_cols=351 Identities=25% Similarity=0.272 Sum_probs=269.9
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE--------EeccchhhH
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--------ISAKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v--------~~~~~~~~~ 145 (477)
||+++++.+++ ||+..++..+++.|.+.||+|.+++......................... ........+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58888887655 78889999999999999999999996654432111000000000000000 000112344
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc-----------hhhHhhcccccccceeeehhhH
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-----------KLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
.+..+||+||++............. . ...++++++|+...... .......+...+.+++.+....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~--~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAAR--L--LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHH--h--cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 4567999999998665544331111 1 12578888998654332 1223344567788888888877
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+ .++.+..++.++|||++...+.+.. ...+.......+.++++++|++...||++.+++++..
T Consensus 157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 157 EELRE----LGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred HHHHh----cCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 77665 4444446899999999988765432 2233344555778999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ +.++++|+++|++ +....+++.+++++..++|.+.|++ +++..+|+.||++++|+. .|++|
T Consensus 224 ~~~-------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~ 289 (374)
T cd03801 224 LRK-------EYPDVRLVIVGDG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFG 289 (374)
T ss_pred Hhh-------hcCCeEEEEEeCc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hcccc
Confidence 876 5578999999988 7888889998889999999999997 999999999999999999 89999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.++..+++.++.+|+++++.| +++++++|.+++++++.+.++++++++.+.+.|
T Consensus 290 ~~~~Ea~~~g~pvI-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03801 290 LVLLEAMAAGLPVV-------ASDVGGIPEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERF 360 (374)
T ss_pred chHHHHHHcCCcEE-------EeCCCChhHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 999999999999889999999988 999999999999999999999999998899999
Q ss_pred CHHHHHHHHHHHHH
Q 011779 453 QEHHMAERIAVVLK 466 (477)
Q Consensus 453 s~~~~~~~~~~~~~ 466 (477)
+|+++++++.++|+
T Consensus 361 ~~~~~~~~~~~~~~ 374 (374)
T cd03801 361 SWDRVAARTEEVYY 374 (374)
T ss_pred CHHHHHHHHHHhhC
Confidence 99999999998873
|
Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. |
| >TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=291.41 Aligned_cols=340 Identities=16% Similarity=0.130 Sum_probs=236.6
Q ss_pred EEEEeccC--CC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------
Q 011779 77 VLLVSHEL--SL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (477)
Q Consensus 77 Il~v~~~~--~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------- 140 (477)
||++++.+ ++ +|+...+++++++|++. |+|++++......+......+...+. .+.+++..
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 77 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCE--EVCVVPLDPRVARLRSLLGLL 77 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhh--eeEEeecCcHHHHHHHHhhhc
Confidence 67888763 33 77788999999999886 99999996543322111111111111 11111110
Q ss_pred -----------------chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----------h
Q 011779 141 -----------------GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------K 193 (477)
Q Consensus 141 -----------------~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------~ 193 (477)
..+...+..++|+||+++.....++.. . . ...+.+++.|+.....+ .
T Consensus 78 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~-~---~--~~~p~i~~~~d~~~~~~~~~~~~~~~~~ 151 (397)
T TIGR03087 78 TGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP-H---V--RGVPRIVDFVDVDSDKWLQYARTKRWPL 151 (397)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc-c---c--cCCCeEeehhhHHHHHHHHHHhccCcch
Confidence 012333457999999997644433221 0 1 11356667776421110 0
Q ss_pred ------------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHH
Q 011779 194 ------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (477)
Q Consensus 194 ------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (477)
......++.++.+++.|....+.+.+ ..+....++.+||||+|.+.|.+.... .
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~----------~ 217 (397)
T TIGR03087 152 RWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY----------P 217 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc----------c
Confidence 01122346778888888887776654 233455789999999999987654211 0
Q ss_pred HhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 262 ~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
...+.++.+|+|+|++.+.||++.+++++.++...+.+ +.|+++|+|+|+|+ . .+++ +++..++|
T Consensus 218 --~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~~----~l~~~~~V 282 (397)
T TIGR03087 218 --NPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAVR----ALAALPGV 282 (397)
T ss_pred --CCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHHH----HhccCCCe
Confidence 01224567899999999999999998655544333332 56899999999983 2 2233 33445689
Q ss_pred EEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHH
Q 011779 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~ 421 (477)
+|+|+++++..+|+.||++|+||. +.||+|++++|||++|+||| +|+.++. .+...+++|++++ +| ++
T Consensus 283 ~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV-------~t~~~~~-~i~~~~~~g~lv~-~~--~~ 350 (397)
T TIGR03087 283 TVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVV-------ASPEAAE-GIDALPGAELLVA-AD--PA 350 (397)
T ss_pred EEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEE-------ecCcccc-cccccCCcceEeC-CC--HH
Confidence 999999999999999999999997 26999999999999999999 8887542 3333456788887 66 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++++|.++++|++.+++|++++++++.++|||+.+++++.++|+
T Consensus 351 ~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 351 DFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999875
|
Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate. |
| >cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=288.59 Aligned_cols=337 Identities=24% Similarity=0.275 Sum_probs=258.6
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcC------cEEEeccchhhHHHhc
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG------VQVISAKGQETINTAL 149 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g------~~v~~~~~~~~~~~~~ 149 (477)
||+++++.+..||+++++..++++|.+.||+|.+++...................... ...........+.+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 5899999988899999999999999999999999996554322111000000000000 0001112224555667
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh------hHhhcccccccceeeehhhHHHHHHHhHh
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (477)
+||+||++.. ....+........ ..++++++|+........ .....+...+.+++.+....+.+.+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~---- 152 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK---- 152 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH----
Confidence 9999999987 2222222222221 357888999875433221 2345667888899988888877765
Q ss_pred hhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc
Q 011779 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 224 ~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
.++.+..++.++|||+|.+.+...... .. +++.+.++++++++|++.+.||++.+++++..+.+
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~------ 216 (353)
T cd03811 153 LLGIPPDKIEVIYNPIDIEEIRALAEE-------PL---ELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK------ 216 (353)
T ss_pred hhcCCccccEEecCCcChhhcCcccch-------hh---hcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh------
Confidence 444456789999999998877554321 00 34556788999999999999999999999999876
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
+.++++|+++|.+ +..+.+++.++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+
T Consensus 217 -~~~~~~l~i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G~ 288 (353)
T cd03811 217 -EGPDARLVILGDG-----PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALGT 288 (353)
T ss_pred -cCCCceEEEEcCC-----ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhCC
Confidence 5578999999998 6778888999999999999999999999999999999999999 8999999999999999
Q ss_pred CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 384 PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPL---AKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~l---a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
||| +++.||..|++.++.+|++++++| .+++ ++++..+..+++.++++++++++.+.++|+
T Consensus 289 PvI-------~~~~~~~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 289 PVV-------ATDCPGPREILEDGENGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred CEE-------EcCCCChHHHhcCCCceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999988 8888 788888888999999999988988888886
|
WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
| >cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=283.84 Aligned_cols=335 Identities=18% Similarity=0.169 Sum_probs=242.8
Q ss_pred EEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhh-------cCc-----E---EE
Q 011779 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD-------RGV-----Q---VI 137 (477)
Q Consensus 76 ~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~-------~g~-----~---v~ 137 (477)
||+++++.+++ ||+++++.+++++|.++||+|++++.................... ... . ..
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 58999988766 788899999999999999999999965443211100000000000 000 0 00
Q ss_pred ---eccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhH
Q 011779 138 ---SAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 138 ---~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
.....+.+.+..+||+||+++.............. ...+++.++|+........... ....+.+++.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~hd~~~~~~~~~~~--~~~~d~ii~~s~~~~ 155 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD---RGIPIVLTLHDYWLICPRQGLF--KKGGDAVIAPSRFLL 155 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh---cCCCEEEEEeeeeeecchhhhh--ccCCCEEEEeCHHHH
Confidence 00112345566899999999853222111111111 1257788888764322211111 123377888888777
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+. +....++.+++||+|...+.+... +.+.++++++++|++.+.||++.+++++.+
T Consensus 156 ~~~~~~-----~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~ 215 (359)
T cd03823 156 DRYVAN-----GLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKR 215 (359)
T ss_pred HHHHHc-----CCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHH
Confidence 766542 333568999999999987654321 234677899999999999999999999998
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ ++++|+++|.+. ......... +..++|.++|+. +++.++|+.||++++||.. .|++|
T Consensus 216 l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~-~e~~~ 277 (359)
T cd03823 216 LPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIW-PENFP 277 (359)
T ss_pred HHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcc-cCCCC
Confidence 854 689999999983 333332222 556799999997 8999999999999999973 79999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.++..|++.++.+|++++++| +++++++|.++++|++.++.+++++++....
T Consensus 278 ~~~~Ea~a~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-- 346 (359)
T cd03823 278 LVIREALAAGVPVI-------ASDIGGMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRSI-- 346 (359)
T ss_pred hHHHHHHHCCCCEE-------ECCCCCHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhhH--
Confidence 99999999999999 999999999999988999999998 9999999999999999999999999876633
Q ss_pred CHHHHHHHHHHHHH
Q 011779 453 QEHHMAERIAVVLK 466 (477)
Q Consensus 453 s~~~~~~~~~~~~~ 466 (477)
+.++++++++|+
T Consensus 347 --~~~~~~~~~~~~ 358 (359)
T cd03823 347 --EDQAEEYLKLYR 358 (359)
T ss_pred --HHHHHHHHHHhh
Confidence 889999999886
|
ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II). |
| >cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=291.83 Aligned_cols=340 Identities=18% Similarity=0.134 Sum_probs=252.2
Q ss_pred EEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhh-h-hcCcEEE-----eccchhhH
Q 011779 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-W-DRGVQVI-----SAKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~-~~g~~v~-----~~~~~~~~ 145 (477)
||++++..+.+ ||+++++.+++++|.+.|++|++++.................. . ....... ........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 58888887765 9999999999999999999999999655432211110000000 0 0000000 00111122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------------hhhHhhcccccccceeeehhh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s~~~ 213 (477)
....++|+||+++...... +. ...++++++|+...... .......+...+.+++.|...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~-------~~--~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL-------RL--RGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc-------cC--CCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 2346899999998655443 11 23578888997542211 112334456778888888877
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~ 293 (477)
.+.+.+ .++.+..++.++|||+|...+...... . +.+.....++++|+++|++.+.||++.+++++.
T Consensus 152 ~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 KRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred HHHHHH----HhCcCHHHEEeeccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 777665 455567789999999998877554321 1 334445567889999999999999999999999
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcc
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~ 371 (477)
.+.+ ..++++|+++|.+... .....+..++.++.++|+++|+. +++..+|+.||++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 9876 4567999999987432 23333333677888999999987 889999999999999999 8999
Q ss_pred cHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 011779 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451 (477)
Q Consensus 372 g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 451 (477)
|++++|||++|+||| +++.|+..|++ +.+|+++++.| +++++++|.++++|++.+.++++++++.+ +.
T Consensus 286 ~~~~~Ea~a~G~pvI-------~~~~~~~~e~~--~~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~ 353 (365)
T cd03809 286 GLPVLEAMACGTPVI-------ASNISSLPEVA--GDAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KR 353 (365)
T ss_pred CCCHHHHhcCCCcEE-------ecCCCCcccee--cCceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999 99999999998 45789999888 99999999999999999999999999655 67
Q ss_pred cCHHHHHHHHH
Q 011779 452 FQEHHMAERIA 462 (477)
Q Consensus 452 fs~~~~~~~~~ 462 (477)
|+|+++++++.
T Consensus 354 ~sw~~~~~~~~ 364 (365)
T cd03809 354 FSWEKTARRTL 364 (365)
T ss_pred CCHHHHHHHHh
Confidence 99999999875
|
mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide. |
| >cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=285.85 Aligned_cols=344 Identities=21% Similarity=0.221 Sum_probs=258.0
Q ss_pred EEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-----------
Q 011779 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------- 142 (477)
Q Consensus 76 ~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~----------- 142 (477)
||+++++.+++ ||++.++..++++|.++||+|++++............. .......++++......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 58999998776 88899999999999999999999996544322110000 00011223443222110
Q ss_pred -----------hhHH-HhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeeccccc----------------ch
Q 011779 143 -----------ETIN-TALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------------FK 193 (477)
Q Consensus 143 -----------~~~~-~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------------~~ 193 (477)
.... +..+||+||++++... ........... ..++++++|+..... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLK---GAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhc---CCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 0111 3678999999983322 22222222211 257888888753221 11
Q ss_pred hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE
Q 011779 194 LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (477)
Q Consensus 194 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i 273 (477)
......+..++.+++.+....+.+. ..+.+..++.++|||++...+.+.... .. +.+.....++++|
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 1122345677888888888777665 345677899999999998877554321 11 3445556788999
Q ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHH
Q 011779 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 351 (477)
Q Consensus 274 l~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~ 351 (477)
+++|++.+.||++.+++++.++.+ . ++++|+++|+| +..+.+++.+...++ ++|.++|+. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~-----~~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDG-----PEKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCc-----ccHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998865 3 68999999998 566777777766666 589999975 7899
Q ss_pred HHHHhcCEEEEcCCCCCCcc-----cHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 352 PYLAAIDVLVQNSQAWGECF-----GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~~-----g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
++|+.||++++||. .|++ |++++|||++|+||| +++.++..+++.++.+|++++++| +++++++
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~ 358 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVL-------ASVDGESAELVEEAGAGLVVPPGD--PEALAAA 358 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEE-------EecCCCchhhhccCCcceEeCCCC--HHHHHHH
Confidence 99999999999999 6765 788999999999999 999999999998888999999988 9999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.+++.|++.++++++++++.+.++|||+.++++|
T Consensus 359 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 359 ILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 99999999999999999999999899999999886
|
wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase. |
| >cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=283.99 Aligned_cols=350 Identities=26% Similarity=0.343 Sum_probs=268.1
Q ss_pred EEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh------hhhhhcCcEE--------Eec
Q 011779 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------HKMWDRGVQV--------ISA 139 (477)
Q Consensus 77 Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~------~~~~~~g~~v--------~~~ 139 (477)
||++++.+++ ||++.++..++++|.+.||+|++++............... .......... ...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5788888776 8888999999999999999999999654433221110000 0000000000 001
Q ss_pred cchhhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc------hhhHhhcccccccceeeeh
Q 011779 140 KGQETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------KLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------~~~~~~~~~~~~~~~~~s~ 211 (477)
.......+ ..+||+||++.......+........ ..++++++|+...... .......+..++.+++.+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 11234445 78999999997555444443333221 1577888887654332 2223445678888898888
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
...+.+.+. +.+..++.+++||+|...+.+.... .. .+++...++++++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKAL-----GIDPEKVTVIPNGVDTERFSPADRA-------EA--RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHHh-----cCCCCceEEcCCCcCcccCCCcchH-------HH--HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 888776642 2567889999999999877654321 11 344555678999999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCC
Q 011779 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+..+.+ ++++++++++|.+ +..+.+++.+++.++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 999876 5678999999998 5677788888888988999999986 679999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
++|++++|||++|+||| +++.|+..+++.++.+|++++++| +++++++|.+++++++. ++++++++.+.
T Consensus 290 ~~~~~~~Ea~~~G~pvI-------~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~ 358 (377)
T cd03798 290 GFGLVLLEAMACGLPVV-------ATDVGGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVA 358 (377)
T ss_pred cCChHHHHHHhcCCCEE-------EecCCChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHH
Confidence 99999999999999999 999999999999999999999988 99999999999999887 78889999999
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|+|+.+++++.++|+++
T Consensus 359 ~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 359 ERFSWENVAERLLELYREV 377 (377)
T ss_pred HHhhHHHHHHHHHHHHhhC
Confidence 9999999999999998763
|
wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
| >TIGR02918 accessory Sec system glycosylation protein GtfA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=285.46 Aligned_cols=273 Identities=18% Similarity=0.286 Sum_probs=214.3
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---------chhhH---hhcccccccceeeehhhHH
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDY---VKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~ 215 (477)
..++|++|++.+....+. ++....+ .+.+.++|..+... +...+ ......++.+++.|....+
T Consensus 209 ~~~~di~i~dr~~~~~~~--~~~~~~~---~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA--VLENKGP---AKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchH--HHhcCCC---ceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 458999999875543322 1222111 46667788643111 11111 2334567888888888888
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 295 (477)
.+.+.+.. ++...+++.+||||++...+.+.. ..++.+|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~~-~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFKK-YYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhhh-hcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 77765432 334467899999998755432210 13457899999999999999999999998
Q ss_pred HHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
.+ +.|+++|+|+|+| +..+.++++++++++.++|.|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 76 6799999999999 6788999999999999999999975 89999999999999998 99999999
Q ss_pred HHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCC--CC----HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGK--EG----ITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d--~~----~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
+||||||+||| +++.+ |.+|+|.+|.+|+++++++ .| ++++|++|.++++ ++.+++|++++++.+
T Consensus 410 lEAma~G~PVI-------~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 410 MEAVGSGLGMI-------GFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA 481 (500)
T ss_pred HHHHHhCCCEE-------EecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 99999999999 99986 8999999999999998542 12 7889999999994 567999999999976
Q ss_pred HHhcCHHHHHHHHHHHHHHH
Q 011779 449 KEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 449 ~~~fs~~~~~~~~~~~~~~~ 468 (477)
+.|||+.++++|.++++++
T Consensus 482 -~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 482 -EGFLTANIIEKWKKLVREV 500 (500)
T ss_pred -HhcCHHHHHHHHHHHHhhC
Confidence 6799999999999998763
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. |
| >cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.15 Aligned_cols=341 Identities=19% Similarity=0.164 Sum_probs=248.6
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh------------------------------hh-
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY------------------------------SL- 125 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------------------------------~~- 125 (477)
+++++..++.+-+|.++.+-.+.|.+.+.+|+++............. .+
T Consensus 2 ~~l~t~~~p~~~~~~f~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 81 (407)
T cd04946 2 LILLTNTFPGAKGESFIEPEIKYLSKSFDKIIILPTNVGKEREKVRPNGVSNIIISNYRQDKSRAKLIFLALSVFSLPFY 81 (407)
T ss_pred EEEEecCCCCCCcccccHHHHHHHHhcCCEEEEEecccccccccCCCccccceEEeecccchhhHHHHHHHHHhhhHHHH
Confidence 56778888777778999999999999999999987443321110000 00
Q ss_pred hhhhhhcCcEEE---ec----cch-hh------H-------HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeee
Q 011779 126 EHKMWDRGVQVI---SA----KGQ-ET------I-------NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI 184 (477)
Q Consensus 126 ~~~~~~~g~~v~---~~----~~~-~~------~-------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (477)
.......+.... .. ... +. . ....++|++|++...........+..+.. .++++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~sy~~~~~~~~~~~l~~~~~--~~~~i~~~ 159 (407)
T cd04946 82 KELLKKLKRRRKNIKYFLLLLYFIKRSILLKLKYLHLLIYNSIDGQGTVFYSYWLHETAYALALLKKEYL--RKRVISRA 159 (407)
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceEEEEecCchHHHHHHHHHHhcC--CceEEEEe
Confidence 000000111000 00 000 00 0 01245677777653333322332333221 13578889
Q ss_pred eecccc--c----chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHH
Q 011779 185 HEMRGH--Y----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (477)
Q Consensus 185 h~~~~~--~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~ 258 (477)
|+.... . +.......+..++.+++.|....+++.+ .++....++.+++||++...+.+..
T Consensus 160 Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~----~~~~~~~ki~vi~~gv~~~~~~~~~---------- 225 (407)
T cd04946 160 HGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK----RYPAYKEKIKVSYLGVSDPGIISKP---------- 225 (407)
T ss_pred ccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH----HCCCccccEEEEECCcccccccCCC----------
Confidence 965321 1 1112233457888999999888887765 5667778999999999987553321
Q ss_pred HHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC--ceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 259 ~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
..++.+.|+++|++.+.||++.+++|+.++.+ +.| +++++++|+| +..+.+++++++.+
T Consensus 226 -------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~-------~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~ 286 (407)
T cd04946 226 -------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK-------ARPSIKIKWTHIGGG-----PLEDTLKELAESKP 286 (407)
T ss_pred -------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-------hCCCceEEEEEEeCc-----hHHHHHHHHHHhcC
Confidence 12567899999999999999999999999976 444 5778889998 67888999998888
Q ss_pred CCCcEEEcccc--CCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceee
Q 011779 337 IQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL 412 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l 412 (477)
..++|.|+|++ +++.++|+. +|++++||. .||+|++++|||++|+||| +++.||.+|++.++.+|++
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVI-------as~vgg~~e~i~~~~~G~l 357 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVI-------ATNVGGTPEIVDNGGNGLL 357 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEE-------eCCCCCcHHHhcCCCcEEE
Confidence 88899999997 578899975 789999999 9999999999999999999 9999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+++++ |+++++++|.++++|++.+++|+++|++.++++|+|+.+.+++.
T Consensus 358 ~~~~~-~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 358 LSKDP-TPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred eCCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 98752 29999999999999999999999999999999999999998875
|
AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea. |
| >PLN02501 digalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=277.54 Aligned_cols=334 Identities=13% Similarity=0.118 Sum_probs=234.0
Q ss_pred ccEEEEEeccCCC--CchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhh--------------hhhhh-hhcC--
Q 011779 74 SKLVLLVSHELSL--SGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYS--------------LEHKM-WDRG-- 133 (477)
Q Consensus 74 ~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~--------------~~~~~-~~~g-- 133 (477)
+++|++++.-.-| .|...--.--|-+|++. |++|+++.++-...+....++ +...+ ...|
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 4679999865444 77665555557778877 799999986544332221111 11222 1122
Q ss_pred --cEE--Ee------------ccchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccccchhh
Q 011779 134 --VQV--IS------------AKGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFKLD 195 (477)
Q Consensus 134 --~~v--~~------------~~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~ 195 (477)
.++ ++ .......+..++|||||+++|....+. ......+. .+++..+|+....|....
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl----~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF----NHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc----CCeEEEEeCCcHHHHhHh
Confidence 222 22 222245666789999999998776666 33333332 257788888654443211
Q ss_pred H------------hhcccc--cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHH
Q 011779 196 Y------------VKHLPL--VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (477)
Q Consensus 196 ~------------~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r 261 (477)
. ..++.. ++.+++.|..+.. + +.. +....||||.+.|.+.... ..+
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L----------~~~-vI~nVnGVDte~F~P~~r~--------~~~ 537 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-L----------PKS-VICNVHGVNPKFLKIGEKV--------AEE 537 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-h----------ccc-ceeecccccccccCCcchh--------HHH
Confidence 1 012222 4666666644442 1 112 2222379999998875431 122
Q ss_pred HhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 262 ~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
+++|++.....++|+||+.++||++.|++|++.+.+ +.++++|+|+|+| +.++++++++.++++ +|
T Consensus 538 r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDG-----P~reeLe~la~eLgL--~V 603 (794)
T PLN02501 538 RELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNG-----EDAHEVQRAAKRLDL--NL 603 (794)
T ss_pred HhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCC-----ccHHHHHHHHHHcCC--EE
Confidence 456765555568899999999999999999998865 5588999999999 788999999999887 59
Q ss_pred EEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHH
Q 011779 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~ 421 (477)
.|+|..++...+|+.+|+||+||. .|+||++++||||||+||| +++.+|.. ++.++.+|+++ +| .+
T Consensus 604 ~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVV-------ATd~pG~e-~V~~g~nGll~--~D--~E 669 (794)
T PLN02501 604 NFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVV-------CADHPSNE-FFRSFPNCLTY--KT--SE 669 (794)
T ss_pred EecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEE-------EecCCCCc-eEeecCCeEec--CC--HH
Confidence 999999889899999999999999 9999999999999999999 99998854 46677788865 56 99
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++++|.+++.++..+..+++ ...|||+.+++++++.-
T Consensus 670 afAeAI~~LLsd~~~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 670 DFVAKVKEALANEPQPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred HHHHHHHHHHhCchhhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 999999999998775544332 23699999999998753
|
|
| >KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=261.27 Aligned_cols=383 Identities=28% Similarity=0.310 Sum_probs=286.8
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHh---------CCcEEEEEecCCCCChhhHHhhhh----------------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRG---------VGTKVNWITIQKPSEEDEVIYSLE---------------- 126 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~~~~~~~---------------- 126 (477)
+..+++++.++....||.++...+.+-.+.. .|++|.+++.+......+......
T Consensus 32 ~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~ 111 (495)
T KOG0853|consen 32 KPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDW 111 (495)
T ss_pred ccchhheeeccccccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEee
Confidence 3456788999999889999888888888888 999999999765544211111111
Q ss_pred ----------hhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhh-
Q 011779 127 ----------HKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD- 195 (477)
Q Consensus 127 ----------~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~- 195 (477)
......+++++..+....+.-..+.|.|+.....++.++...+.. |...++++|++|.....+.++.
T Consensus 112 lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g 189 (495)
T KOG0853|consen 112 LPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLG 189 (495)
T ss_pred cCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccC
Confidence 111222333333333222222367899999888777777776665 7778899999999776654432
Q ss_pred -----H--------hhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 196 -----Y--------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 196 -----~--------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
+ .......+.+++++..++..+...+. .++..++.+.+.++|.+.+.+... ..+...+...|.
T Consensus 190 ~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~~-~~~~~~~~~~r~ 265 (495)
T KOG0853|consen 190 VLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFV---SLSNSDITSTYPEIDGSWFTYGQY-ESHLELRLPVRL 265 (495)
T ss_pred ccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhh---hcCCCCcceeeccccchhcccccc-ccchhcccccce
Confidence 1 11123556678888888888777644 345555889999999887765211 112233456667
Q ss_pred hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecC-----CCcchHHHHHHHHHHHhcCC
Q 011779 263 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 263 ~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g-----~~~~~~~~~~l~~~~~~~~l 337 (477)
+.+....+..+..+.++.+.||++.+++++..+...+++. ..++.+++++|+. ..++..+.++++++++++++
T Consensus 266 ~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l 343 (495)
T KOG0853|consen 266 YRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL 343 (495)
T ss_pred eeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc
Confidence 7788777889999999999999999999999998866543 4577899999943 34455689999999999988
Q ss_pred -CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 338 -QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 338 -~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+.|.|+....+...+...+|..+.-+....|+||++++|||+||+||| |++.||..|+|.++.+|++++++
T Consensus 344 ~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvv-------At~~GGP~EiV~~~~tG~l~dp~ 416 (495)
T KOG0853|consen 344 LGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVV-------ATNNGGPAEIVVHGVTGLLIDPG 416 (495)
T ss_pred cCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEE-------EecCCCceEEEEcCCcceeeCCc
Confidence 5788888887777777777776444443337999999999999999999 99999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++.+..+++++.++..||+.+.+|+++++++++++|+|..+.+++.++..+..
T Consensus 417 ~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 417 QEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 42223799999999999999999999999999999999999999998887653
|
|
| >PHA01630 putative group 1 glycosyl transferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=253.07 Aligned_cols=295 Identities=17% Similarity=0.156 Sum_probs=207.9
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHHHHhh
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLK 170 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~ 170 (477)
++-.-+.+.|...|++|+++-...-. +..+.. +++..+.|+.....+ ..
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~-~~~~~~~~~~~~~~~----~~ 62 (331)
T PHA01630 14 RQKKLLEEHLKMLGHKVTVFEKPTLT--------------------------KYQLPP-GYPIYIYYTIFNSML----FW 62 (331)
T ss_pred HHHHHHHHHHHHhCCeeEEEeccchh--------------------------hhhcCC-CCceeeehhhhhHHH----HH
Confidence 55666778888889999887522110 011111 344444554333222 22
Q ss_pred hCCCccccceeeeeeecccccchhhHhhc--ccccccceeeehhhHHHHHHHhHhhhccC-CCCeEEEecCCchhhhhhh
Q 011779 171 EDVPRVLPNVLWWIHEMRGHYFKLDYVKH--LPLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVA 247 (477)
Q Consensus 171 ~~~~~~~~~~i~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~i~vi~ngvd~~~~~~~ 247 (477)
.+++..+.++++.+|... .....+..+ ...++.+++.|....+.+.+ .+++ .+++.+||||+|.+.|.+.
T Consensus 63 ~~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 63 KGIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred hhccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCCC
Confidence 233445567888888742 222223332 46789999999998887754 2443 4689999999999887643
Q ss_pred hhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHH
Q 011779 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 327 (477)
... ..++++++++|++.++||++.+++|++++.+ +.++++++++|++. ....
T Consensus 136 ~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~~ 187 (331)
T PHA01630 136 PKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDPR 187 (331)
T ss_pred ccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cchh
Confidence 211 1355777788899999999999999999876 55899999999762 2222
Q ss_pred HHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 328 LRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
+ .++.+ +......+++..+|+.||++|+||. .|+||++++||||||+||| +|+.||..|++.++
T Consensus 188 l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVI-------as~~gg~~E~i~~~ 251 (331)
T PHA01630 188 L------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVV-------VTEKGAWSEWVLSN 251 (331)
T ss_pred h------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEE-------EeCCCCchhhccCC
Confidence 1 12222 1111223889999999999999999 8999999999999999999 99999999999999
Q ss_pred CceeeecCC-----------------CCCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 408 TTGLLHPVG-----------------KEGITPLAKNIVKLATHV--ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 408 ~~G~l~~~~-----------------d~~~~~la~~i~~ll~~~--~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
.+|++++.+ +.|.+++++++.+++.|+ +.++++..++.+.+.++|||++++++++++|++
T Consensus 252 ~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 252 LDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred CceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 888887643 112788999999988863 445555555555667899999999999999974
|
|
| >cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=260.06 Aligned_cols=313 Identities=19% Similarity=0.195 Sum_probs=212.1
Q ss_pred EEEEEeccCC-CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH-----hhhhhhh--hhcCc-EEEe-ccchhhH
Q 011779 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-----YSLEHKM--WDRGV-QVIS-AKGQETI 145 (477)
Q Consensus 76 ~Il~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~--~~~g~-~v~~-~~~~~~~ 145 (477)
||+++++.+. .||+|+.+.++++.|.+.+ |..+............ ....... ..... ...+ .......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDAD--IFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCCC--EEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5888888776 4999999999999987532 3222222111110000 0000000 00000 0000 0001122
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc-------------------------hhhHhhcc
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF-------------------------KLDYVKHL 200 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------------~~~~~~~~ 200 (477)
....++|+|++++......+. .. ...+.++++|......+ .....+.+
T Consensus 79 ~~~~~~D~v~~~~~~~~~~~~--~~-----~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 79 FDLSGYDLVISSSHAVAKGVI--TR-----PDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred ccccCCCEEEEcCcHHhcccc--CC-----CCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 334689999998753333211 11 11345566665211000 00112334
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~ 280 (477)
+.++.+++.|....+.+.+. ++ .+..+|+||+|.+.+.+.. .....++++||+.
T Consensus 152 ~~~d~ii~~S~~~~~~~~~~----~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~~ 205 (351)
T cd03804 152 ARVDYFIANSRFVARRIKKY----YG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRLV 205 (351)
T ss_pred cCCCEEEECCHHHHHHHHHH----hC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcCc
Confidence 77888999999888887653 33 3468999999988775432 2334688999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcC
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aD 358 (477)
+.||++.+++|++++ + ++|+|+|+| +..+.+++ +..++|+|+|++ +++.++|+.||
T Consensus 206 ~~K~~~~li~a~~~~-----------~-~~l~ivG~g-----~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 206 PYKRIDLAIEAFNKL-----------G-KRLVVIGDG-----PELDRLRA-----KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred cccChHHHHHHHHHC-----------C-CcEEEEECC-----hhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 999999999999865 5 899999999 55566655 445899999997 55999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
++++||. |+||++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|..+++|++
T Consensus 264 ~~v~ps~---e~~g~~~~Eama~G~Pvi-------~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~--- 328 (351)
T cd03804 264 AFLFPAE---EDFGIVPVEAMASGTPVI-------AYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED--- 328 (351)
T ss_pred EEEECCc---CCCCchHHHHHHcCCCEE-------EeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---
Confidence 9999984 999999999999999999 999999999999999999999988 9999999999999884
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
.+++++++.+ ++|+|+++.+++
T Consensus 329 ~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 329 FDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred cCHHHHHHHH-HhcCHHHHHHHh
Confidence 2333444444 459999988765
|
wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea. |
| >cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=261.93 Aligned_cols=263 Identities=20% Similarity=0.286 Sum_probs=211.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc--------h---hhHhhcccccccceeeehhhHHHH
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------K---LDYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------~---~~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
.++|+++++.+....+.. .....+ .+.+.++|+.+.... . ......+..++.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~--~~~~~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQAL--LNMKKA---AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhH--HhccCC---ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 689999999866555411 221111 235667776432211 1 112233467778888888777776
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~ 297 (477)
.+ .++.. .++.+||||++...+.+... ...++..++++||+.+.||++.+++++.++.+
T Consensus 173 ~~----~~~~~-~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGNY-NPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCCC-CceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 55 33322 34899999999876654210 01456788999999999999999999999977
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
+.|+++|+|+|.| +....+++.+++++++++|.|.|+.+++.++|+.||++|+||. .||||++++|
T Consensus 232 -------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYG-----DEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeC-----chHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 6799999999999 5677788888999999999999998999999999999999999 9999999999
Q ss_pred HHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 378 AMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 378 Ama~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
||++|+||| +++.+ |..+++.++.+|++++++| +++++++|..+++|++.+++|++++++.+ ++|||++
T Consensus 298 Ama~G~PvI-------~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~ 367 (372)
T cd04949 298 ALSHGLPVI-------SYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYENA-ERYSEEN 367 (372)
T ss_pred HHhCCCCEE-------EecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHH
Confidence 999999999 99987 7899999999999999998 99999999999999999999999999985 7899999
Q ss_pred HHHHH
Q 011779 457 MAERI 461 (477)
Q Consensus 457 ~~~~~ 461 (477)
++++|
T Consensus 368 ~~~~w 372 (372)
T cd04949 368 VWEKW 372 (372)
T ss_pred HHhcC
Confidence 98864
|
In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra |
| >PLN02275 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-31 Score=254.96 Aligned_cols=307 Identities=12% Similarity=0.070 Sum_probs=211.8
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCc-EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc---ch-------h-
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQ-------E- 143 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~---~~-------~- 143 (477)
++.+++- +-.|++.++..++..|.++|+ +|++++...+.. ........|++++..+ .. +
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~-------~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~ 76 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEP-------IPALLNHPSIHIHLMVQPRLLQRLPRVLYA 76 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC-------CHHHhcCCcEEEEECCCcccccccccchHH
Confidence 4444442 346778899999999998875 899999544321 1222334456665543 10 0
Q ss_pred -----h------------HHHhcCCcEEEEcCcchhh--HHHHHhhhCCCccccceeeeeeeccccc-------------
Q 011779 144 -----T------------INTALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHY------------- 191 (477)
Q Consensus 144 -----~------------~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------- 191 (477)
. ..+..+||+||+|++.... .......... ..+++.++|+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~---~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 153 (371)
T PLN02275 77 LALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLR---RAKFVIDWHNFGYTLLALSLGRSHPLVR 153 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHh---CCCEEEEcCCccHHHHhcccCCCCHHHH
Confidence 0 1234799999998754322 1222222111 146777888752110
Q ss_pred -chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCC
Q 011779 192 -FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 270 (477)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 270 (477)
........++.++.+++.|....+.+.+ .+|++ +.+||||. .+.|.+.... . .+. +++.
T Consensus 154 ~~~~~e~~~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-------~----~~~-~~~~ 213 (371)
T PLN02275 154 LYRWYERHYGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-------I----RLR-PNRP 213 (371)
T ss_pred HHHHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-------h----ccc-CCCc
Confidence 0111223456788899988888877654 34543 88999995 4555443211 0 111 1344
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc----------cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~----------~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
.+++++||+.++||++.+++|+..+..++...+ ...|+++|+|+|+| +.+++++++++++++++
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRH- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCc-
Confidence 677899999999999999999998754322100 03588999999999 67899999999999975
Q ss_pred EEEcc-c--cCCHHHHHHhcCEEEEcCC-CCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 341 VHFVN-K--TLTVAPYLAAIDVLVQNSQ-AWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 341 v~~~g-~--~~~l~~~~~~aDv~v~pS~-~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
+.|.+ + .+++..+|+.||++|+|+. .+.|++|++++||||||+||| +++.||.+|++.++.+|++++
T Consensus 288 v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVV-------a~~~gg~~eiv~~g~~G~lv~-- 358 (371)
T PLN02275 288 VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVC-------AVSYSCIGELVKDGKNGLLFS-- 358 (371)
T ss_pred eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEE-------EecCCChHHHccCCCCeEEEC--
Confidence 77765 4 3899999999999998642 125899999999999999999 999999999999999999997
Q ss_pred CCCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLA 431 (477)
Q Consensus 417 d~~~~~la~~i~~ll 431 (477)
| +++++++|.+++
T Consensus 359 ~--~~~la~~i~~l~ 371 (371)
T PLN02275 359 S--SSELADQLLELL 371 (371)
T ss_pred C--HHHHHHHHHHhC
Confidence 5 899999998874
|
|
| >PHA01633 putative glycosyl transferase group 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=240.73 Aligned_cols=307 Identities=18% Similarity=0.167 Sum_probs=210.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
||-++++..+ +....+..+++..|++.|.-|++.+....-. . .+.-+-.+++
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~--------------- 52 (335)
T PHA01633 1 MKTAILTMNY--SSISNVSEDIAEVLRENGEIVTITKNPFYIP----------K-AEKLIVFIPF--------------- 52 (335)
T ss_pred CceEEEEech--hhhhhHHHHHHHHHHhCCcEEEEecCCcccC----------c-cceEEEEeec---------------
Confidence 3445555444 3445788899999999998888887432110 0 0000111111
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEE
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (477)
|-+....++..... +. ...+++.++|+... ...+.+.+.+-+.++++|..+.+.+.+ .|++.. + +
T Consensus 53 --~~~~~~~~~~~~~~--~~-~~~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~-i-~ 117 (335)
T PHA01633 53 --HPPSLNPYLYAYYQ--FK-GKKYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQE-----VGLQVD-L-P 117 (335)
T ss_pred --CCcccchHHhhhhh--hc-CCCceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc-e-e
Confidence 11222222221111 11 11457778887643 234455555566788999888887663 355544 3 5
Q ss_pred EecCCchhhhhhhhhhHHHHHHHHHHHHhhCCC-CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC----ce
Q 011779 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP----SV 309 (477)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~----~~ 309 (477)
|+||+|.+.|.+.... ..++|++++.. ++.++|+++||+.++||++.+++|++++.+ +.| ++
T Consensus 118 I~~GVD~~~f~p~~~~------~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~-------~~p~~~~~i 184 (335)
T PHA01633 118 VFHGINFKIVENAEKL------VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNT-------KYPDIAKKI 184 (335)
T ss_pred eeCCCChhhcCccchh------hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHH-------hCCCccccE
Confidence 7899999988764321 24566666643 467899999999999999999999999876 344 46
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc---c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g---~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
+++++|.+ ..++++++++|+|+| + .+++.++|++||++|+||. .|+||++++|||+||+|
T Consensus 185 ~l~ivG~~-------------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~P 249 (335)
T PHA01633 185 HFFVISHK-------------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTP 249 (335)
T ss_pred EEEEEcHH-------------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCC
Confidence 78888742 124567788999995 3 3679999999999999999 99999999999999999
Q ss_pred EEeeccccccccCCCceEEee----------------c--CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 385 VLLQKCLYQGTAAGGTTEIVV----------------N--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 385 vI~~~~~~~~~~~gg~~e~v~----------------~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
|| +++.||++|++. + ...|++++..| +++++++|..++...+ +..++.++++
T Consensus 250 VV-------as~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~ 319 (335)
T PHA01633 250 VI-------HQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKE 319 (335)
T ss_pred EE-------EccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHH
Confidence 99 888888888643 1 22466888777 9999999999866322 3333667777
Q ss_pred HHHHhcCHHHHHHHHHH
Q 011779 447 RVKEIFQEHHMAERIAV 463 (477)
Q Consensus 447 ~~~~~fs~~~~~~~~~~ 463 (477)
.+ +.|+|+++.++|++
T Consensus 320 ~a-~~f~~~~~~~~~~~ 335 (335)
T PHA01633 320 LA-KKYDIRNLYTRFLE 335 (335)
T ss_pred HH-HhcCHHHHHHHhhC
Confidence 66 66999999999863
|
|
| >COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=236.68 Aligned_cols=371 Identities=19% Similarity=0.135 Sum_probs=265.1
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhh------------------h-h
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM------------------W-D 131 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~------------------~-~ 131 (477)
|||++++.+..| ||..-.+..|.++|++.|++|.|+.+..+.........+.... . .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 689999987655 8988999999999999999999999777632221111000000 0 0
Q ss_pred cCcEEEeccch------------------h---------hHH-Hh---cCCcEEEEcCcchhhHHHHHhhhCCCccccce
Q 011779 132 RGVQVISAKGQ------------------E---------TIN-TA---LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (477)
Q Consensus 132 ~g~~v~~~~~~------------------~---------~~~-~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (477)
.+++++-+... + ... .. ..|||||+|+...+................+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 01222111000 0 001 11 36999999986665543333332111223688
Q ss_pred eeeeeeccccc--c--------------h----------hhHhhcccccccceeeehhhHHHHHHH-----hHhhhccCC
Q 011779 181 LWWIHEMRGHY--F--------------K----------LDYVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKM 229 (477)
Q Consensus 181 i~~~h~~~~~~--~--------------~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~ 229 (477)
++++|+..... . . ...+..+..++.+.++|.+.+..+... +...+....
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~ 240 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRS 240 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhcc
Confidence 99999853211 0 0 111223457777888888888766511 001112233
Q ss_pred CCeEEEecCCchhhhhhhhhhH-----------HHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHH
Q 011779 230 PDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESL 296 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~~-----------~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~ 296 (477)
.++.-|.||+|.+.+.|..++. .+...+..+++++|++. +.+++.++||+..+||+|.+++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 6789999999999988765531 25567789999999983 5699999999999999999999999998
Q ss_pred HHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+ ..+++++.|.|. ..+++.+..+++.+.. ++. ..|+.+. ...+|+.+|++++||+ +|++|++
T Consensus 321 ~---------~~~~~vilG~gd---~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ 384 (487)
T COG0297 321 E---------QGWQLVLLGTGD---PELEEALRALASRHPG--RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLT 384 (487)
T ss_pred H---------hCceEEEEecCc---HHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHH
Confidence 7 449999999983 2688889998887753 443 3455544 5566999999999999 9999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCCceEEeec--------CCceeeecCCCCCHHHHHHHHHHHHh---CHHH-HHHHHH
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--------GTTGLLHPVGKEGITPLAKNIVKLAT---HVER-RLTMGK 442 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--------~~~G~l~~~~d~~~~~la~~i~~ll~---~~~~-~~~~~~ 442 (477)
-++||.+|+++| +..+||.+|.|.+ ..+|+++.+.+ +++++.+|.+.+. +++. .+.+..
T Consensus 385 ql~amryGtvpI-------v~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~--~~~l~~al~rA~~~y~~~~~~w~~~~~ 455 (487)
T COG0297 385 QLYAMRYGTLPI-------VRETGGLADTVVDRNEWLIQGVGTGFLFLQTN--PDHLANALRRALVLYRAPPLLWRKVQP 455 (487)
T ss_pred HHHHHHcCCcce-------EcccCCccceecCccchhccCceeEEEEecCC--HHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999999999 9999999998875 47999999987 9999999998876 4444 666666
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
++.. ..|+|+..+.+|.++|+.+++...
T Consensus 456 ~~m~---~d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 456 NAMG---ADFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred hhcc---cccCchhHHHHHHHHHHHHhcccc
Confidence 6655 679999999999999999987654
|
|
| >PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=238.50 Aligned_cols=323 Identities=15% Similarity=0.090 Sum_probs=223.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
||||+++.... ||.+++..+|+++|.++||+|++++...... .......|++++....
T Consensus 1 ~~~i~i~~~g~--gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~l 70 (357)
T PRK00726 1 MKKILLAGGGT--GGHVFPALALAEELKKRGWEVLYLGTARGME--------ARLVPKAGIEFHFIPSGGLRRKGSLANL 70 (357)
T ss_pred CcEEEEEcCcc--hHhhhHHHHHHHHHHhCCCEEEEEECCCchh--------hhccccCCCcEEEEeccCcCCCChHHHH
Confidence 38898888555 6888889999999999999999999654211 1111223554433221
Q ss_pred ------------hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 142 ------------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 142 ------------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
.+++.+..+||+||+|+.........+.+. . ..|++++.|..... ...+..+...+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~~~---~~~r~~~~~~d~ii~~ 143 (357)
T PRK00726 71 KAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARL-L---GIPLVIHEQNAVPG---LANKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHH-c---CCCEEEEcCCCCcc---HHHHHHHHHhchheEC
Confidence 023445678999999985433322211111 1 14555554432111 1111223456666655
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
+... +. . .+..++++++||++.+.+.+.. .+.+++++++.++|+++|+....|++..++
T Consensus 144 ~~~~---~~-----~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---FP-----E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---hh-----c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 5421 11 1 4678999999999987654311 123466667778888999888888875555
Q ss_pred -HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCC
Q 011779 290 -HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 290 -~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~ 368 (477)
+|+.++.+ . + ..++++|+| +. +.+.+..+ +++. |.|.|+++++.++|+.||+++.+|.
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g-----~~-~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g--- 261 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKG-----DL-EEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG--- 261 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCC-----cH-HHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC---
Confidence 88887743 2 3 567788998 33 44555555 7663 9999999999999999999997653
Q ss_pred CcccHHHHHHHHcCCCEEeeccccccccCCC--------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 369 ECFGRITIEAMAFQLPVLLQKCLYQGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 369 E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+.+++|||++|+||| ++..++ ..+.+.+..+|+++++.|.++++++++|.++++|++.+++|
T Consensus 262 ---~~~~~Ea~~~g~Pvv-------~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 331 (357)
T PRK00726 262 ---ASTVAELAAAGLPAI-------LVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAM 331 (357)
T ss_pred ---HHHHHHHHHhCCCEE-------EecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 689999999999999 766543 23556677799999887656899999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++.+ +.++.+.+++.+.++.+
T Consensus 332 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 332 AEAARALG-KPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHhcC-CcCHHHHHHHHHHHHhh
Confidence 99999876 66899999988887654
|
|
| >PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=236.65 Aligned_cols=332 Identities=15% Similarity=0.127 Sum_probs=222.6
Q ss_pred chhhHHHHHHHHHHhCCcEEEE--EecCCCCChhhHHhhhhhhhhhcCcEE--Eeccc---hhhHHHhcCCcEEEEcCcc
Q 011779 88 GGPLLLMELAFLLRGVGTKVNW--ITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAKG---QETINTALKADLIVLNTAV 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~~~~~~~~~~~~~~~g~~v--~~~~~---~~~~~~~~~~DiV~~~~~~ 160 (477)
|-...+..|++.|.++++++.| .+...... .........++.+ ++... .+.+.+..+||+||++...
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~------~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTPTGS------ERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCccHH------HHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecc
Confidence 4448899999999998766444 22222111 1111111223433 33332 3466678899999987432
Q ss_pred hhh-HHHHHhhhCCCccccceeeeeeeccccc------chhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeE
Q 011779 161 AGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTY 233 (477)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~ 233 (477)
... .+..+...+ .+++...|...... +.......++.++.+++.|....+.+. .+|++.+ +.
T Consensus 135 ~~~~~l~~~~~~~-----ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~ 203 (425)
T PRK05749 135 LWPNLIAELKRRG-----IPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VT 203 (425)
T ss_pred hhHHHHHHHHHCC-----CCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cE
Confidence 211 222222222 33443333321111 122233455678888988888887765 3466666 88
Q ss_pred EEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE
Q 011779 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313 (477)
Q Consensus 234 vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i 313 (477)
+++|+ +.+.+.+... ......+|++++ +++.+++++|+. .|+.+.+++|++++.+ ++|+++|+|
T Consensus 204 vi~n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~-------~~~~~~lii 267 (425)
T PRK05749 204 VTGNL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLK-------QFPNLLLIL 267 (425)
T ss_pred ecccc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHH-------hCCCcEEEE
Confidence 88885 3332211111 112456777777 455677777763 6889999999999876 568999999
Q ss_pred EecCCCcchHHH-HHHHHHHHhcCCCC-------------cEEEccccCCHHHHHHhcCEEEE-cCCCCCCcccHHHHHH
Q 011779 314 IGSDMNAQTKFE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEA 378 (477)
Q Consensus 314 vG~g~~~~~~~~-~~l~~~~~~~~l~~-------------~v~~~g~~~~l~~~~~~aDv~v~-pS~~~~E~~g~~~lEA 378 (477)
+|+| +.+ ++++++++++|+.. .|.+.+...++..+|+.||++++ +|. .|++|.+++||
T Consensus 268 vG~g-----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEA 340 (425)
T PRK05749 268 VPRH-----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEP 340 (425)
T ss_pred cCCC-----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHH
Confidence 9998 554 78999999988742 34444445689999999999655 666 79999999999
Q ss_pred HHcCCCEEeeccccccccC-CCceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Q 011779 379 MAFQLPVLLQKCLYQGTAA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 456 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~~-gg~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~ 456 (477)
|++|+||| +++. ++..|+++.. ++|.+++++| +++++++|.++++|++.+++|++++++.+.++ ..
T Consensus 341 ma~G~PVI-------~g~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~ 408 (425)
T PRK05749 341 AAFGVPVI-------SGPHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QG 408 (425)
T ss_pred HHhCCCEE-------ECCCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---cc
Confidence 99999999 7654 4556655442 4688888888 99999999999999999999999999998664 46
Q ss_pred HHHHHHHHHHHHHhh
Q 011779 457 MAERIAVVLKEVLKK 471 (477)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (477)
.++++.+++.+.++.
T Consensus 409 ~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 409 ALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHHHHhccc
Confidence 778888888776654
|
|
| >TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=233.94 Aligned_cols=289 Identities=17% Similarity=0.135 Sum_probs=205.7
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++...+. .++.+.+|...+.. +.....+.+-.+|.+...+...+..+....
T Consensus 126 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLL-PAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhHH-HHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3458999998655443 3344444443 46778888643221 222333344455555555555555555444
Q ss_pred Hhhhcc-----------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+.+|. ...++.++|||||.+.|.+...........+.+|++++ ++++|+++||+.+.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CCeEEEEccccccccCHHHHHH
Confidence 433332 33468899999999999775433222223345777773 6788999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCc----eEEEEEecCCCcchHHHHHHHHHHHhc--------CCCC--cEEEcc-c--cCCHHHH
Q 011779 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVN-K--TLTVAPY 353 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~l~~--~v~~~g-~--~~~l~~~ 353 (477)
|++++.+ ++|+ +.|+++|.....+.+...++++.++++ +..+ .+++++ . .+++..+
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9999876 4454 568877632212224455555555543 1111 144544 3 3889999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 429 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 429 (477)
|++||++|+||. .||||++++||||||+| || +|+.+|..+.+. +|++++|.| +++++++|.+
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vV-------lS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~ 418 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLI-------LSEFAGAAQELN---GALLVNPYD--IDGMADAIAR 418 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEE-------EeCCCCChHHhC---CcEEECCCC--HHHHHHHHHH
Confidence 999999999999 99999999999999999 99 999888887773 799999999 9999999999
Q ss_pred HHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 430 LAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 430 ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++ +++.++++.+++++++. .||+..+++++++-+
T Consensus 419 aL~~~~~er~~r~~~~~~~v~-~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 419 ALTMPLEEREERHRAMMDKLR-KNDVQRWREDFLSDL 454 (456)
T ss_pred HHcCCHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHh
Confidence 998 77889999999999985 599999999987644
|
This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib |
| >cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=238.93 Aligned_cols=288 Identities=16% Similarity=0.114 Sum_probs=200.6
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
...|+|++|........ ..+....+. .++++.+|...+.. ......+.+-.+|.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~llp-~~lr~~~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLLP-QMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHHH-HHHHhhCCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 36799999987554433 334443332 47888889653322 111222233334444444444444433333
Q ss_pred Hhhhcc------------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
....+. ...++.++|||||.+.|.+...... .++.+++..+..+++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPE---VQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCch---hHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222222 2246899999999999876543211 1233344445556888999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhcCCC------CcEEE-ccc--cCCHHH
Q 011779 290 HSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQKKIQ------DRVHF-VNK--TLTVAP 352 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~~l~------~~v~~-~g~--~~~l~~ 352 (477)
+|++.+.+ ++|+ ++|+++|.+...+ ..+.+++++++.+.+.. ..|++ .|. .+++..
T Consensus 284 ~A~~~ll~-------~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~ 356 (460)
T cd03788 284 LAFERLLE-------RYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAA 356 (460)
T ss_pred HHHHHHHH-------hChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHH
Confidence 99999876 4454 6788887643211 23445555555543321 23544 454 489999
Q ss_pred HHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
+|+.||++|+||. .||||++++|||+||+| || +++.+|..+. +.+|++++++| +++++++|.
T Consensus 357 ~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV-------~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~ 422 (460)
T cd03788 357 LYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLI-------LSEFAGAAEE---LSGALLVNPYD--IDEVADAIH 422 (460)
T ss_pred HHHhccEEEeCcc--ccccCcccceeEEEecCCCceEE-------Eeccccchhh---cCCCEEECCCC--HHHHHHHHH
Confidence 9999999999999 99999999999999999 88 8888888776 46899999999 999999999
Q ss_pred HHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 429 KLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 429 ~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
++++ +++.++.+++++++.+ +.||++.++++++.-
T Consensus 423 ~~l~~~~~e~~~~~~~~~~~v-~~~~~~~w~~~~l~~ 458 (460)
T cd03788 423 RALTMPLEERRERHRKLREYV-RTHDVQAWANSFLDD 458 (460)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHh
Confidence 9998 5578888899999888 569999999988753
|
It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain. |
| >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=230.48 Aligned_cols=313 Identities=15% Similarity=0.121 Sum_probs=212.2
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--c--------------
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--K-------------- 140 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--~-------------- 140 (477)
|++.+... ||..+++..++++|.++||+|++++....... ......|+++..+ .
T Consensus 2 ~~~~~~~~--gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (350)
T cd03785 2 ILIAGGGT--GGHIFPALALAEELRERGAEVLFLGTKRGLEA--------RLVPKAGIPLHTIPVGGLRRKGSLKKLKAP 71 (350)
T ss_pred EEEEecCc--hhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--------hcccccCCceEEEEecCcCCCChHHHHHHH
Confidence 55555433 78889899999999999999999996543211 1111223433221 1
Q ss_pred --------chhhHHHhcCCcEEEEcCcchhhHHHH-HhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeeh
Q 011779 141 --------GQETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~ 211 (477)
....+.+..+||+||+|+......... +...+ .+++.+.|.... ....+..+...+.+++.+.
T Consensus 72 ~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~-----~p~v~~~~~~~~---~~~~~~~~~~~~~vi~~s~ 143 (350)
T cd03785 72 FKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLG-----IPLVIHEQNAVP---GLANRLLARFADRVALSFP 143 (350)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhC-----CCEEEEcCCCCc---cHHHHHHHHhhCEEEEcch
Confidence 012344667999999997544332221 22222 244443333211 1111222344677777666
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH-HHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLH 290 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~-ll~ 290 (477)
...++ ++..++.+++||+|.+.+.+.+ . ++++++++++++++++|+....|+.+. +++
T Consensus 144 ~~~~~----------~~~~~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~ 202 (350)
T cd03785 144 ETAKY----------FPKDKAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPE 202 (350)
T ss_pred hhhhc----------CCCCcEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHH
Confidence 55443 3567899999999987664321 1 677888888888888887777777654 558
Q ss_pred HHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCC
Q 011779 291 SFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E 369 (477)
++..+.+ +++++ +++|+| ..+++++.++++ .++|+|.|+++++.++|+.||++|.+|.
T Consensus 203 a~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg---- 261 (350)
T cd03785 203 ALAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG---- 261 (350)
T ss_pred HHHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC----
Confidence 8877742 45654 477876 346677777766 4789999999999999999999997652
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCC--------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg--------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
+++++|||++|+||| +++.++ ..+.+.+..+|+++++++.|+++++++|.++++|++.+++|+
T Consensus 262 --~~t~~Eam~~G~Pvv-------~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 332 (350)
T cd03785 262 --ASTVAELAALGLPAI-------LIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMA 332 (350)
T ss_pred --HhHHHHHHHhCCCEE-------EeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 689999999999999 665543 245666677999999872229999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHH
Q 011779 442 KRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~ 459 (477)
+++++++ +.+..+++++
T Consensus 333 ~~~~~~~-~~~~~~~i~~ 349 (350)
T cd03785 333 EAARSLA-RPDAAERIAD 349 (350)
T ss_pred HHHHhcC-CCCHHHHHHh
Confidence 9999877 4566666553
|
It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PRK13609 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=226.68 Aligned_cols=338 Identities=11% Similarity=0.073 Sum_probs=225.3
Q ss_pred CccEEEEEeccCCCC-chhhHHHHHHHHHHhCCcEEEEEecCCCCCh---hhH-H--h-------hhhhhhhhcCc-EEE
Q 011779 73 KSKLVLLVSHELSLS-GGPLLLMELAFLLRGVGTKVNWITIQKPSEE---DEV-I--Y-------SLEHKMWDRGV-QVI 137 (477)
Q Consensus 73 ~~~~Il~v~~~~~~g-G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~---~~~-~--~-------~~~~~~~~~g~-~v~ 137 (477)
++|||++++..+ | |....+..++++|.++|++|++++....... ... . | +....+...+. ...
T Consensus 3 ~~~rili~t~~~--G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 80 (380)
T PRK13609 3 KNPKVLILTAHY--GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIY 80 (380)
T ss_pred CCCeEEEEEcCC--CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 567999999777 5 4447789999999999998777764332111 000 0 0 00000001000 000
Q ss_pred e-----------ccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccc
Q 011779 138 S-----------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (477)
Q Consensus 138 ~-----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (477)
. ......+.+..+||+||++.+..... .+.+... ...|++..+++... .....++.++.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~--~~~~~~~--~~ip~~~~~td~~~-----~~~~~~~~ad~i 151 (380)
T PRK13609 81 DKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVP--ELKKQTG--ISIPTYNVLTDFCL-----HKIWVHREVDRY 151 (380)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHH--HHHHhcC--CCCCeEEEeCCCCC-----CcccccCCCCEE
Confidence 0 12234556678999999987654432 2222211 11344433333211 111234578888
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCC-eEEEEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~il~vGrl~~~Kg~ 285 (477)
++.+....+.+. .+|++.+++.+++++++..+.... . +..+++++++++++ +++++.|++...|++
T Consensus 152 ~~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~-~-------~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 152 FVATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKI-N-------PDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred EECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcC-C-------HHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 888887766655 357788889888777764332111 1 24578889998765 456667888889999
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCC
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~ 365 (477)
+.+++++.+ .++++++++|++. .+.++.+++++++.+ ++|+|+|+++++.++|+.||+++.
T Consensus 219 ~~li~~l~~-----------~~~~~~viv~G~~---~~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~--- 279 (380)
T PRK13609 219 KELCQSLMS-----------VPDLQVVVVCGKN---EALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT--- 279 (380)
T ss_pred HHHHHHHhh-----------CCCcEEEEEeCCC---HHHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe---
Confidence 999888753 2688988775421 146778888877665 689999999999999999999883
Q ss_pred CCCCcccHHHHHHHHcCCCEEeecccccccc-CCCce----EEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 366 AWGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 366 ~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~~----e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
++.|++++|||++|+||| +++ .+|.. +++. ++|..+...| +++++++|.++++|++.+++|
T Consensus 280 ---~~gg~t~~EA~a~g~PvI-------~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m 345 (380)
T PRK13609 280 ---KPGGITLSEAAALGVPVI-------LYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQM 345 (380)
T ss_pred ---CCCchHHHHHHHhCCCEE-------ECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHH
Confidence 345899999999999999 764 45421 2332 3455555667 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
++++++.. +.++++++++.+++.+...
T Consensus 346 ~~~~~~~~-~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 346 KEAMKSLY-LPEPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHhC-CCchHHHHHHHHHHhhhhh
Confidence 99998766 5589999999998887654
|
|
| >TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=226.56 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=206.8
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc--------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------- 140 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-------------- 140 (477)
|||+|++... ||......+|+++|.++||+|++++...+... ......|+++....
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--------~~~~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--------RLVPKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--------cccccCCCceEEEeccCcCCCChHHHHH
Confidence 4788888555 45555667999999999999999985432110 01122344443221
Q ss_pred ----------chhhHHHhcCCcEEEEcCcchhhHHHH-HhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 141 ----------GQETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
...++.+..+||+||+|.......... ....+ .+++.+.+.. ..........+.++.+++.
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~---~~~~~~~~~~~~~d~ii~~ 142 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLG-----IPLFHHEQNA---VPGLTNKLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcC-----CCEEEECCCC---CccHHHHHHHHHhCeeEEC
Confidence 112445667899999997544332221 12222 2333322211 1111122233567777777
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHH-H
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-F 288 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~-l 288 (477)
+....+++ +..+|+||++...+.+.. .+++++++++.++++++|+....|++.. +
T Consensus 143 ~~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 198 (348)
T TIGR01133 143 FPGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELV 198 (348)
T ss_pred chhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHH
Confidence 76554432 247999999977654321 1235677788889999998777888654 5
Q ss_pred HHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~ 367 (477)
+++++.+.+ ++++++ ++|++ ..+.+++.++++++.+.+.|. . .++.++|+.||++|.+|.
T Consensus 199 ~~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~-~~~~~~l~~ad~~v~~~g-- 259 (348)
T TIGR01133 199 PKALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-D-ENMAAAYAAADLVISRAG-- 259 (348)
T ss_pred HHHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-c-cCHHHHHHhCCEEEECCC--
Confidence 578877744 345554 44444 346788888888876666666 3 389999999999997542
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCC-------ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg-------~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
|++++|||++|+|+| +++.++ ..+++.++.+|++++++|.++++++++|.++++|++.+++|
T Consensus 260 ----~~~l~Ea~~~g~Pvv-------~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 328 (348)
T TIGR01133 260 ----ASTVAELAAAGVPAI-------LIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAM 328 (348)
T ss_pred ----hhHHHHHHHcCCCEE-------EeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 689999999999999 666543 23577788899999887645999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~ 459 (477)
++++++++. .+..+++++
T Consensus 329 ~~~~~~~~~-~~~~~~i~~ 346 (348)
T TIGR01133 329 AEAARKLAK-PDAAKRIAE 346 (348)
T ss_pred HHHHHhcCC-ccHHHHHHh
Confidence 999987663 345554443
|
RL J Bacteriol 1993 Mar;175(6):1841-3 |
| >cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=224.00 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=199.1
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc---h-----------------------h---hHhhc
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---K-----------------------L---DYVKH 199 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---~-----------------------~---~~~~~ 199 (477)
.++|++|+|....+..+..+.+...+ .+.+++.|....... . . ..+..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~---VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVD---VSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCC---CCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 57999999987666655544433222 478889996432211 0 0 01122
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHH---------HHHHHHHHHHhhCCCCCC
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA---------KRVLREHVRESLGVRNED 270 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~---------~~~~~~~~r~~~~~~~~~ 270 (477)
...++.++++|..+...+.. .|+.++++ |||||+|.+.|....+... ....+..++.++++++++
T Consensus 224 a~~Ad~fttVS~it~~E~~~----Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEH----LLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHHH----HhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 34667777777777776654 66777765 9999999999876542210 111234567778888777
Q ss_pred eEEEE-Eeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc-------chHHHHHH-------------
Q 011779 271 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESEL------------- 328 (477)
Q Consensus 271 ~~il~-vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l------------- 328 (477)
.++++ +||+.. +||+|.+|+|+.++...++..+.+..=+-|+++-.+... ..+..+++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77777 799998 999999999999998877652111111334443322110 00111111
Q ss_pred ------------------------------------------------------HHHHHhcCCC----Cc--EEEccc--
Q 011779 329 ------------------------------------------------------RNYVMQKKIQ----DR--VHFVNK-- 346 (477)
Q Consensus 329 ------------------------------------------------------~~~~~~~~l~----~~--v~~~g~-- 346 (477)
...+++.++- ++ |+|++.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 1122222232 22 566552
Q ss_pred -------cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc----eEEeecC-Cceeeec
Q 011779 347 -------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT----TEIVVNG-TTGLLHP 414 (477)
Q Consensus 347 -------~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~----~e~v~~~-~~G~l~~ 414 (477)
-.+..++|+.||++|+||. +||||++++||||||+||| +|+.+|+ .|++.++ ..|+.+.
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI-------~t~~~gf~~~v~E~v~~~~~~gi~V~ 528 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSI-------TTNLSGFGCFMEEHIEDPESYGIYIV 528 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEE-------EccCcchhhhhHHHhccCCCceEEEe
Confidence 1457889999999999999 9999999999999999999 9999998 5555444 3566665
Q ss_pred CCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 415 VGK-----EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 415 ~~d-----~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+.+ +++++++++|.++++. +.++.+..+++ +...+.|+|++.++.|.+.|..+++
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 211 1378899999998854 56666666644 3444789999999999999998775
|
GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity. |
| >PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=203.21 Aligned_cols=169 Identities=29% Similarity=0.504 Sum_probs=153.3
Q ss_pred HHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 257 ~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
++..+.+.+.+.++++|+++||+.+.||++.+++++..+.+. ..+++.++|+|.+ ++...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~------~~~~~~l~i~G~~-----~~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEK------KNPNYKLVIVGDG-----EYKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHH------HHTTEEEEEESHC-----CHHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhh------cCCCeEEEEEccc-----cccccccccccccc
Confidence 567788888889999999999999999999999999998652 1388999999977 68888999999999
Q ss_pred CCCcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 337 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 337 l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
+.++++|+|... ++..+|+.||++|+||. .|+||++++|||++|+||| +++.|+..|++.++.+|++++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI-------~~~~~~~~e~~~~~~~g~~~~ 141 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVI-------ASDIGGNNEIINDGVNGFLFD 141 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEE-------EESSTHHHHHSGTTTSEEEES
T ss_pred ccccccccccccccccccccccceecccccc--cccccccccccccccccee-------eccccCCceeeccccceEEeC
Confidence 999999999975 99999999999999999 8999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Q 011779 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYER 447 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~ 447 (477)
+.| +++++++|.+++++++.++.|+++++++
T Consensus 142 ~~~--~~~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 142 PND--IEELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 998 9999999999999999999999999874
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B .... |
| >PLN02605 monogalactosyldiacylglycerol synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=218.54 Aligned_cols=274 Identities=13% Similarity=0.072 Sum_probs=188.8
Q ss_pred hHHHhcCCcEEEEcCcchhh----HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHH
Q 011779 144 TINTALKADLIVLNTAVAGK----WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKN 219 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (477)
+++++.+||+||++.+.... .+........ ...+++..+++... .......+.++.+++.+....+.+.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~--~~~p~~~~~tD~~~----~~~~w~~~~~d~~~~~s~~~~~~l~- 166 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELG--KKIPFTTVVTDLGT----CHPTWFHKGVTRCFCPSEEVAKRAL- 166 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccC--CCCCEEEEECCCCC----cCcccccCCCCEEEECCHHHHHHHH-
Confidence 45567899999997655322 2222111111 12355544544311 1112223677888887777666554
Q ss_pred HhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHH
Q 011779 220 RTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299 (477)
Q Consensus 220 ~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 299 (477)
.+|++.+++.+++++++.+++.+.. .+..+|+++|++++.++|+++|+....|++..+++++..+....
T Consensus 167 ----~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~ 235 (382)
T PLN02605 167 ----KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDK 235 (382)
T ss_pred ----HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccc
Confidence 4578889999999999876543321 14668999999999999999999988999999999987653100
Q ss_pred HhhccCcCceE-EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 300 KEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 300 ~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
.. ..++.+ ++++|.+. ..++++++. ....+|+|+|+++++.++|++||++|.++ .|++++||
T Consensus 236 ~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EA 298 (382)
T PLN02605 236 NL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEA 298 (382)
T ss_pred cc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHH
Confidence 00 125565 56777662 234555543 22357999999999999999999999754 37899999
Q ss_pred HHcCCCEEeecccccccc------CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Q 011779 379 MAFQLPVLLQKCLYQGTA------AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEI 451 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~------~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~~~ 451 (477)
|+||+||| +++ .|+...+ .++..|+.. +| +++++++|.+++.| ++.+++|++++++.. ..
T Consensus 299 ma~g~PvI-------~~~~~pgqe~gn~~~i-~~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~-~~ 365 (382)
T PLN02605 299 LIRGLPII-------LNGYIPGQEEGNVPYV-VDNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLA-RP 365 (382)
T ss_pred HHcCCCEE-------EecCCCccchhhHHHH-HhCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC
Confidence 99999999 666 3444334 444566654 56 99999999999998 999999999999877 44
Q ss_pred cCHHHHHHHHHHHH
Q 011779 452 FQEHHMAERIAVVL 465 (477)
Q Consensus 452 fs~~~~~~~~~~~~ 465 (477)
.+.+.+++.+.+..
T Consensus 366 ~a~~~i~~~l~~~~ 379 (382)
T PLN02605 366 EAVFDIVHDLHELV 379 (382)
T ss_pred chHHHHHHHHHHHh
Confidence 67777777666543
|
|
| >PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=230.07 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=211.7
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.-|+|.+|....... ..+++...|. .++.+.+|...+.. +.....+.+-.+|.+-..+...+..+.+...
T Consensus 147 ~~d~vWvhDYhL~ll-p~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLMFL-PQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhhhH-HHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 458999998554443 4444444544 47788888754332 2223334444555555555555555554433
Q ss_pred hhhccC-----------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
..++.. ..++.++|||||.+.|.+.............++++++ ++.+|+++||+.+.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 333322 2468899999999988765432222222335566654 56788999999999999999999
Q ss_pred HHHHHHHHHhhccCcCce----EEEEEecCCCcchHHHHHHHHHHHhcC--CCCc--------EEEcc-cc--CCHHHHH
Q 011779 292 FYESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-KT--LTVAPYL 354 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~----~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~--------v~~~g-~~--~~l~~~~ 354 (477)
++.+.+ ++|++ .|+.++.....+.+..+++++.++++. +.++ |++++ .. +++..+|
T Consensus 301 fe~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 999877 55664 455444322222356667777777663 3222 33333 22 7899999
Q ss_pred HhcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
+.||+||+||. .||||++++||||||+| +| .|+.+|..+.+ +.+|++++|.| ++++|++|.++
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlV-------lSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~a 440 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLV-------LSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEA 440 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEE-------eeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHH
Confidence 99999999999 99999999999999999 99 99999998876 56899999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
++ +++.++++.++.++++ ..++|..+++.+++.++++..+
T Consensus 441 L~m~~~er~~r~~~~~~~v-~~~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 441 LNMSDEERETRHRHNFQYV-KTHSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HhCCHHHHHHHHHHHHHhh-hhCCHHHHHHHHHHHHHHHhhh
Confidence 99 8888988889899888 5589999999999999887653
|
|
| >PRK13608 diacylglycerol glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=211.02 Aligned_cols=340 Identities=11% Similarity=0.090 Sum_probs=215.3
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhCC---cEEEEEe---cCCCCChhhHHhhhhh-----------hhhhcCc
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVG---TKVNWIT---IQKPSEEDEVIYSLEH-----------KMWDRGV 134 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G---~~V~v~~---~~~~~~~~~~~~~~~~-----------~~~~~g~ 134 (477)
.+||||+++.++ |||. ..+..|.++|.++| .+|.++- ...+.........+.. .+.....
T Consensus 4 ~~~~vlil~~~~--G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~ 81 (391)
T PRK13608 4 QNKKILIITGSF--GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPD 81 (391)
T ss_pred CCceEEEEECCC--CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCch
Confidence 457899999665 5555 77889999998875 4565444 1212111100000000 0000000
Q ss_pred EE-------EeccchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccce
Q 011779 135 QV-------ISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (477)
Q Consensus 135 ~v-------~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (477)
.. ........+.+..+||+|+++.+.... ..+...+. ...|++...++.. .... ...+.++.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~~--~~iP~~~v~td~~---~~~~--w~~~~~d~~~ 152 (391)
T PRK13608 82 KLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVM--SVLTEQFN--INIPVATVMTDYR---LHKN--WITPYSTRYY 152 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHH--HHHHHhcC--CCCCEEEEeCCCC---cccc--cccCCCCEEE
Confidence 00 011223455667899999998765432 22222111 1134433233221 1111 1235677788
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~~~Kg~~ 286 (477)
+.+....+.+. ..|++.+++.++.++++..+.... .+...++++|++++++ ++++.|+++..||++
T Consensus 153 v~s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~--------~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~ 219 (391)
T PRK13608 153 VATKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPI--------DQKQWLIDNNLDPDKQTILMSAGAFGVSKGFD 219 (391)
T ss_pred ECCHHHHHHHH-----HcCCCHHHEEEECeecChHhcccc--------cHHHHHHHcCCCCCCCEEEEECCCcccchhHH
Confidence 87777766654 347888899998888875533211 1345677889886654 556789999899999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~ 366 (477)
.+++++.+ ..+++++++++++.. ...+++++. .+..++|.++|+++++.++|+.||++|.
T Consensus 220 ~li~~~~~----------~~~~~~~vvv~G~~~---~l~~~l~~~---~~~~~~v~~~G~~~~~~~~~~~aDl~I~---- 279 (391)
T PRK13608 220 TMITDILA----------KSANAQVVMICGKSK---ELKRSLTAK---FKSNENVLILGYTKHMNEWMASSQLMIT---- 279 (391)
T ss_pred HHHHHHHh----------cCCCceEEEEcCCCH---HHHHHHHHH---hccCCCeEEEeccchHHHHHHhhhEEEe----
Confidence 99998532 336788876643310 233444433 3444689999999999999999999995
Q ss_pred CCCcccHHHHHHHHcCCCEEeecccccccc-CCCc----eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~----~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
.+.|++++|||++|+|+| +++ .+|. ..++.+.+.|+. .+| .++++++|.++++|++.+++|+
T Consensus 280 --k~gg~tl~EA~a~G~PvI-------~~~~~pgqe~~N~~~~~~~G~g~~--~~~--~~~l~~~i~~ll~~~~~~~~m~ 346 (391)
T PRK13608 280 --KPGGITISEGLARCIPMI-------FLNPAPGQELENALYFEEKGFGKI--ADT--PEEAIKIVASLTNGNEQLTNMI 346 (391)
T ss_pred --CCchHHHHHHHHhCCCEE-------ECCCCCCcchhHHHHHHhCCcEEE--eCC--HHHHHHHHHHHhcCHHHHHHHH
Confidence 235889999999999999 664 3331 223334445544 446 8999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++++.. +.|+++.+++.+.+++....+
T Consensus 347 ~~~~~~~-~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 347 STMEQDK-IKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHhhhhhh
Confidence 9999876 559999999999998876543
|
|
| >PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=221.05 Aligned_cols=294 Identities=16% Similarity=0.160 Sum_probs=202.2
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++...+. .++.+.+|...+.. +.....+.+-.+|.+--.+......+.+..
T Consensus 132 ~~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 46778888754322 222223333344444444555454444444
Q ss_pred Hhhhcc-----------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 222 ~~~~~~-----------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+.++. ...++.++|||||.+.|.+...........+.+|+.+ +++++|+++||+.+.||++.+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 333331 1235899999999999987643322222234456554 46679999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhcC----C---CCcEEEcccc--CCHHHH
Q 011779 291 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQKK----I---QDRVHFVNKT--LTVAPY 353 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~~----l---~~~v~~~g~~--~~l~~~ 353 (477)
|+.++.+ ++|+ ++|+++|.+.... .+++.++.+++.+.+ . .+.+.|.|.. +++..+
T Consensus 286 A~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~l 358 (726)
T PRK14501 286 AFERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVAL 358 (726)
T ss_pred HHHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHH
Confidence 9999877 4564 7899887442221 123444444443322 1 1234566653 889999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcC-----CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ-----LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G-----~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
|+.||++++||. .||||++++|||+|| .||+ +...|+..+++ .|++++|.| +++++++|.
T Consensus 359 y~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vl-------s~~~G~~~~l~----~~llv~P~d--~~~la~ai~ 423 (726)
T PRK14501 359 YRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLIL-------SEMAGAAAELA----EALLVNPND--IEGIAAAIK 423 (726)
T ss_pred HHhccEEEeccc--ccccCcccceEEEEcCCCCceEEE-------ecccchhHHhC----cCeEECCCC--HHHHHHHHH
Confidence 999999999999 999999999999994 5677 77778888775 489999999 999999999
Q ss_pred HHHhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 429 KLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 429 ~ll~~-~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
+++.+ ++.+.+..+++++.+ ..|||+.+++++++.|+++..+
T Consensus 424 ~~l~~~~~e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 424 RALEMPEEEQRERMQAMQERL-RRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhh
Confidence 99984 455566667788887 5799999999999999988654
|
|
| >cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=185.42 Aligned_cols=224 Identities=27% Similarity=0.271 Sum_probs=161.5
Q ss_pred EEEEeccCC--CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 77 Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
|+++++... .||.+++...+++.|.++||+|+++. . .........+..+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~----~---------------------~~~~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVA----L---------------------LLLLLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEE----e---------------------chHHHHHHHhhcCCCEE
Confidence 456666655 47888999999999999999999998 0 00111223335799999
Q ss_pred EEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEE
Q 011779 155 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 234 (477)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~v 234 (477)
|+++............. . ...++++++|+........... ..+...
T Consensus 56 ~~~~~~~~~~~~~~~~~-~--~~~~~i~~~h~~~~~~~~~~~~-----------------~~~~~~-------------- 101 (229)
T cd01635 56 HAHGYYPAPLALLLAAR-L--LGIPLVLTVHGVNRSLLEGVPL-----------------SLLALS-------------- 101 (229)
T ss_pred EEcCCCcHHHHHHHHHh-h--CCCCEEEEEcCccHhhcccCcH-----------------HHHHHH--------------
Confidence 99986665544311111 1 2257888888764332211000 000000
Q ss_pred EecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE
Q 011779 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314 (477)
Q Consensus 235 i~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv 314 (477)
.......++|++.+.||++.+++++..+.+ +.++++++++
T Consensus 102 ---------------------------------~~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~ 141 (229)
T cd01635 102 ---------------------------------IGLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIA 141 (229)
T ss_pred ---------------------------------HhhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEE
Confidence 000011189999999999999999999976 5579999999
Q ss_pred ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccc
Q 011779 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391 (477)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~ 391 (477)
|.+ +.....+..+.+.+..++|.++|+. +++..+++.||+++.||. .|++|++++|||++|+|+|
T Consensus 142 G~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi----- 209 (229)
T cd01635 142 GDG-----PEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVI----- 209 (229)
T ss_pred eCC-----CChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEE-----
Confidence 998 3444455546677778899999983 556666777999999999 8999999999999999999
Q ss_pred cccccCCCceEEeecCCceeee
Q 011779 392 YQGTAAGGTTEIVVNGTTGLLH 413 (477)
Q Consensus 392 ~~~~~~gg~~e~v~~~~~G~l~ 413 (477)
+++.++..|++.++++|+++
T Consensus 210 --~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 210 --ATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred --EcCCCCcceEEECCCceEEC
Confidence 99999999999999999874
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=195.16 Aligned_cols=324 Identities=14% Similarity=0.018 Sum_probs=200.6
Q ss_pred EEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCC-CChhhHHhhhhhhhhhcCcEEE------------------
Q 011779 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVI------------------ 137 (477)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~~~g~~v~------------------ 137 (477)
++++......++....-..++..|+++||.|.++.+... ..... .......+.
T Consensus 6 ~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T cd04950 6 DILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQP--------RGRDWVRVVLRLRAALRRPRRLDPLIP 77 (373)
T ss_pred eEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCC--------CCcccEEeeecccccccCccccCcccc
Confidence 333333334455567788999999999999999885432 11000 000011110
Q ss_pred ecc------chh-hHH-----HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch------hhHhhc
Q 011779 138 SAK------GQE-TIN-----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKH 199 (477)
Q Consensus 138 ~~~------~~~-~~~-----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~ 199 (477)
+.. ... .+. ...+..+++++.+....+... . ...++++++++....... ......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~ 150 (373)
T cd04950 78 ARRRRLLRLLLNALLFWAQLELGFGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRL 150 (373)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHH
Confidence 000 000 111 134455666666655443332 1 124677887765432211 123455
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
++.++.+++.|....+.+.+ ++ .++.+||||+|.+.|.+...... ..+... ..++++++|+|++
T Consensus 151 ~~~ad~vi~~S~~l~~~~~~-----~~---~~i~~i~ngvd~~~f~~~~~~~~------~~~~~~--~~~~~~i~y~G~l 214 (373)
T cd04950 151 LKRADLVFTTSPSLYEAKRR-----LN---PNVVLVPNGVDYEHFAAARDPPP------PPADLA--ALPRPVIGYYGAI 214 (373)
T ss_pred HHhCCEEEECCHHHHHHHhh-----CC---CCEEEcccccCHHHhhcccccCC------ChhHHh--cCCCCEEEEEecc
Confidence 67888888888887766543 23 68999999999998866432110 001111 2466899999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
.+.++++.+.++++ ..|+++|+++|++.. ...... +...+||+|+|++ +++..+|+.+
T Consensus 215 ~~~~d~~ll~~la~-----------~~p~~~~vliG~~~~-----~~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 215 AEWLDLELLEALAK-----------ARPDWSFVLIGPVDV-----SIDPSA----LLRLPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred ccccCHHHHHHHHH-----------HCCCCEEEEECCCcC-----ccChhH----hccCCCEEEeCCCCHHHHHHHHHhC
Confidence 99888776655443 238999999999721 111111 1113689999986 8899999999
Q ss_pred CEEEEcCCC---CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 358 DVLVQNSQA---WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 358 Dv~v~pS~~---~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
|++++|+.. ..+++|++++||||+|+||| +++.++..+ ....+++ .++| +++++++|.+++.++
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVV-------at~~~~~~~---~~~~~~~-~~~d--~~~~~~ai~~~l~~~ 341 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVV-------ATPLPEVRR---YEDEVVL-IADD--PEEFVAAIEKALLED 341 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEE-------ecCcHHHHh---hcCcEEE-eCCC--HHHHHHHHHHHHhcC
Confidence 999999862 12468999999999999999 888765443 3333444 4556 999999999976633
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 435 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
..... +++++ +.+.|||+..++++.+.+.+
T Consensus 342 ~~~~~--~~~~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 342 GPARE--RRRLR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred CchHH--HHHHH-HHHHCCHHHHHHHHHHHHHh
Confidence 22111 12222 45679999999999865543
|
The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center |
| >KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-21 Score=168.10 Aligned_cols=356 Identities=17% Similarity=0.157 Sum_probs=237.8
Q ss_pred ccEEEEEeccCCC-CchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhh----hhhhhhhcCcEEEeccchh---
Q 011779 74 SKLVLLVSHELSL-SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKGQE--- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~----~~~~~~~~g~~v~~~~~~~--- 143 (477)
.+.+.|++|+.+. ||+|+++..-.+.+++.- +...|.+.+-+..++..... +.-.+...++..+.++...
T Consensus 43 ~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVe 122 (465)
T KOG1387|consen 43 VKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVE 122 (465)
T ss_pred ceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeee
Confidence 4679999999888 677799999999988753 34444444433333322221 1222333445544332210
Q ss_pred ---------------------hHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------------
Q 011779 144 ---------------------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------------ 190 (477)
Q Consensus 144 ---------------------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------ 190 (477)
..+-...||+.+-.-..+.. ....... ...|++.++|-..-.
T Consensus 123 a~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs-~p~~r~l----~~~~V~aYvHYP~iS~DML~~l~qrq~ 197 (465)
T KOG1387|consen 123 ASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFS-YPIFRRL----RRIPVVAYVHYPTISTDMLKKLFQRQK 197 (465)
T ss_pred cccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcch-hHHHHHH----ccCceEEEEecccccHHHHHHHHhhhh
Confidence 11124688887655322211 1111111 115677777752110
Q ss_pred -----cchhhHhhcc--------cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHH
Q 011779 191 -----YFKLDYVKHL--------PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 257 (477)
Q Consensus 191 -----~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 257 (477)
+-+..+++.+ ..++.++++|..+.+.+.+ ..+ ...+.+++.+++.+..+..
T Consensus 198 s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~q----iW~--~~~~~iVyPPC~~e~lks~---------- 261 (465)
T KOG1387|consen 198 SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQ----IWQ--SNTCSIVYPPCSTEDLKSK---------- 261 (465)
T ss_pred cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHH----Hhh--ccceeEEcCCCCHHHHHHH----------
Confidence 0111122221 3455566666666555443 222 2568899999987743322
Q ss_pred HHHHHhhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC-CcchHHHHHHHHHHHhc
Q 011779 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQK 335 (477)
Q Consensus 258 ~~~r~~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~ 335 (477)
.+- ..+...++++|.+.|+|++. +++.++-...+.+.. +..++++|+++|+-- ..+...-+.++++++++
T Consensus 262 ------~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~-a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L 333 (465)
T KOG1387|consen 262 ------FGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLE-ASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL 333 (465)
T ss_pred ------hcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchh-hccCCceEEEEeccCChhhHHHHHHHHHHHHhc
Confidence 222 25668899999999999999 555554433221110 044679999999853 33445677889999999
Q ss_pred CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc-eEEeec---CCc
Q 011779 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT-TEIVVN---GTT 409 (477)
Q Consensus 336 ~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~-~e~v~~---~~~ 409 (477)
+++++|.|.-.. +++..+|..|.+-|..-- .|.||+.+.|+||+|+-.| +.+.||. -|+|.+ ..+
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi-------~h~SgGP~lDIV~~~~G~~t 404 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPI-------VHNSGGPLLDIVTPWDGETT 404 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEE-------EeCCCCCceeeeeccCCccc
Confidence 999999997764 899999999999998886 9999999999999999999 9999987 688865 347
Q ss_pred eeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 410 GLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++.+. .++.++++.+++. +++.|..|+++||..+ .+|+..++.+.+.+.+..+++..
T Consensus 405 GFla~t----~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 405 GFLAPT----DEEYAEAILKIVKLNYDERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred eeecCC----hHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhccc
Confidence 999853 6899999999998 8888999999999877 67999999999999999888654
|
|
| >TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=185.65 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=206.3
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|.-..... ...+....+. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.+..
T Consensus 131 ~~~d~vWVhDYhL~ll-p~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~ 207 (487)
T TIGR02398 131 AEGATVWVHDYNLWLV-PGYIRQLRPD--LKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAA 207 (487)
T ss_pred CCCCEEEEecchhhHH-HHHHHHhCCC--CeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 3458999998554443 3444444443 46778888754332 222233333344444444444444444433
Q ss_pred HhhhccC--------------------------------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC
Q 011779 222 RERLRIK--------------------------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE 269 (477)
Q Consensus 222 ~~~~~~~--------------------------------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 269 (477)
.+.+|.. .-++.++|.|||.+.|.............+.+|++++ +
T Consensus 208 ~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~ 284 (487)
T TIGR02398 208 RGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA---G 284 (487)
T ss_pred HHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---C
Confidence 3333221 1137899999999999765443333344567888887 6
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc----eEEEEEecCCCcc----hHHHHHHHHHHHhc------
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS----VHAVIIGSDMNAQ----TKFESELRNYVMQK------ 335 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~----~~l~ivG~g~~~~----~~~~~~l~~~~~~~------ 335 (477)
+.+|+.++|+++.||++..++||.++++ ++|+ +.|+++|.+.... ..+..++++++.+.
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~-------~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~ 357 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLE-------RRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFAR 357 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHH-------hCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCC
Confidence 7889999999999999999999999987 5564 7999998764322 23556666666654
Q ss_pred -CCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCC
Q 011779 336 -KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGT 408 (477)
Q Consensus 336 -~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~ 408 (477)
+..+-+.|.+.. +++..+|+.||+++.+|. .||++++..|+|+|+. |+| .|..+|..+.+ .
T Consensus 358 ~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLI-------LSefaGaa~~l---~ 425 (487)
T TIGR02398 358 IGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLV-------LSEFAGAAVEL---K 425 (487)
T ss_pred CCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEE-------Eeccccchhhc---C
Confidence 444556777774 889999999999999999 9999999999999998 999 99999998666 3
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
.+++++|.| ++++|++|.+.++ ..+.+++.-+..++.+ ..++...+++.+++-+.
T Consensus 426 ~AllVNP~d--~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 426 GALLTNPYD--PVRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRWADEFLAAVS 481 (487)
T ss_pred CCEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHhh
Confidence 689999999 9999999999999 4555666666677777 55899999988875443
|
Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise. |
| >PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=190.09 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=206.5
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe--------------c
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------A 139 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~--------------~ 139 (477)
+|||++++... |+..+...++++|++.++++.++........... +...+....+.+.. .
T Consensus 1 ~~ki~i~~Ggt---~G~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 74 (380)
T PRK00025 1 PLRIAIVAGEV---SGDLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIR 74 (380)
T ss_pred CceEEEEecCc---CHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHH
Confidence 46888887544 4455555699999998888888874332111000 00000000111111 1
Q ss_pred cchhhHHHhcCCcEEEEcCcc-hh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHH
Q 011779 140 KGQETINTALKADLIVLNTAV-AG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
...+.+.+..+||+||++... .. .....+...+ .|++.+.+.....+......+..+.++.+++.+....+.+
T Consensus 75 ~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~-----ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~ 149 (380)
T PRK00025 75 RRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAG-----IPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFY 149 (380)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCC-----CCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHH
Confidence 112455567899999998632 11 1122222223 3444444432111222223334566788888887766665
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEe-ecccC-CCHHHHHHHHHH
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIIN-SVSRG-KGQDLFLHSFYE 294 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vG-rl~~~-Kg~~~ll~a~~~ 294 (477)
.+ +|. ++.++.|++...... .+ .+..++++++++++.+++ ++.| |.... ++++.+++++..
T Consensus 150 ~~-----~g~---~~~~~G~p~~~~~~~-~~-------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~ 213 (380)
T PRK00025 150 DK-----LGV---PVTFVGHPLADAIPL-LP-------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQL 213 (380)
T ss_pred Hh-----cCC---CeEEECcCHHHhccc-cc-------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 43 332 255555554332111 01 135678889988776654 4445 33333 447889999988
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
+.+ +.|+++++++|+++ +.++++++.+++. ++. +.+.. .++..+|+.||++|.+| |.
T Consensus 214 l~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~ 271 (380)
T PRK00025 214 LQQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GT 271 (380)
T ss_pred HHH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cH
Confidence 865 55789999998632 5677788888776 553 55543 58999999999999987 57
Q ss_pred HHHHHHHcCCCEEeecc----ccc------cccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 374 ITIEAMAFQLPVLLQKC----LYQ------GTAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~----~~~------~~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
+++|||++|+|+|+++. ++. ..+.+++++++.++. .+++.+..| ++++++++.++++|++.+++|+
T Consensus 272 ~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~ 349 (380)
T PRK00025 272 VTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALL 349 (380)
T ss_pred HHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHH
Confidence 88899999999993311 100 014566677776654 456666666 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++.+..+. . ....++++.+.+.+++.
T Consensus 350 ~~~~~~~~~-~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 350 EGFTELHQQ-L-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHH-h-CCCHHHHHHHHHHHHhh
Confidence 998655543 2 22345555555555543
|
|
| >TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-20 Score=178.17 Aligned_cols=332 Identities=15% Similarity=0.120 Sum_probs=197.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcE--E-Eec-----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISA----------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~--v-~~~----------- 139 (477)
|||++++..-+-- ..+..+.++|.+. ++++.++...... .. ........++. + +..
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 71 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EM---LDQVLDLFHLPPDYDLNIMSPGQTLGEIT 71 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HH---HHHHHHhcCCCCCeeeecCCCCCCHHHHH
Confidence 5788887443211 3577888999875 5666555532211 11 11111122221 1 111
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccc--cc--chhhH-hhcc-cccccce
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG--HY--FKLDY-VKHL-PLVAGAM 207 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~--~~--~~~~~-~~~~-~~~~~~~ 207 (477)
.....+.+..+||+||+|+.....+.. .+...++ |++..-++... .+ +.... +... +.++.++
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~i-----pv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~ 146 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQI-----PVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHF 146 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCC-----CEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhcc
Confidence 112355567899999999743322211 2233333 34322222211 11 11111 1112 2346667
Q ss_pred eeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHH
Q 011779 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQD 286 (477)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~ 286 (477)
+.+....+.+. ..|++++++.+++||+....+...... .+..++++++. ++.++++..+|. ...||++
T Consensus 147 ~~s~~~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~~~-----~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~ 215 (365)
T TIGR00236 147 APTEQAKDNLL-----RENVKADSIFVTGNTVIDALLTNVEIA-----YSSPVLSEFGE-DKRYILLTLHRRENVGEPLE 215 (365)
T ss_pred CCCHHHHHHHH-----HcCCCcccEEEeCChHHHHHHHHHhhc-----cchhHHHhcCC-CCCEEEEecCchhhhhhHHH
Confidence 77776666654 348888999999999743332221110 12456667763 334444444454 2468999
Q ss_pred HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS 364 (477)
.+++|+.++.+ +.|+++++++|.+.. ..... +.+.++..++|+|+|.. .++..+|+.+|+++.+|
T Consensus 216 ~ll~a~~~l~~-------~~~~~~~vi~~~~~~---~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S 282 (365)
T TIGR00236 216 NIFKAIREIVE-------EFEDVQIVYPVHLNP---VVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS 282 (365)
T ss_pred HHHHHHHHHHH-------HCCCCEEEEECCCCh---HHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC
Confidence 99999998865 457889988865421 22222 33334556789999975 56778899999999876
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
|..++|||++|+||| ++ +.|+..+++.++ .+.+++ .| ++++++++.++++|++.+++|+++
T Consensus 283 -------g~~~~EA~a~g~PvI-------~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~ 344 (365)
T TIGR00236 283 -------GGVQEEAPSLGKPVL-------VLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNA 344 (365)
T ss_pred -------hhHHHHHHHcCCCEE-------ECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhc
Confidence 345899999999999 75 678888888765 555664 45 999999999999999999888776
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~ 463 (477)
...+. +..+++++++.+.+
T Consensus 345 ~~~~g-~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 345 SNPYG-DGEASERIVEELLN 363 (365)
T ss_pred CCCCc-CchHHHHHHHHHHh
Confidence 63322 23344555554444
|
Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. |
| >COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=170.98 Aligned_cols=203 Identities=30% Similarity=0.456 Sum_probs=171.1
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
++.+++++++.+.+... ..++..+ ...++++||+.+.||++.+++++..+.+ ..++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKK-------RGPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhh-------hcCC
Confidence 78999999999876542 1122233 3789999999999999999999999876 3455
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.++++|.+... ...+...+.+.+..+++.|+|... ++..+++.+|++++||. .|+||++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998421 356666888888778999999864 78888999999999999 7999999999999999999
Q ss_pred eeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 387 LQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++.++..+++.++.+|++++..| ++++++++..++++++.++.+++.+++.+.+.|+|+..++++.+++.
T Consensus 305 -------~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 305 -------ASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred -------ECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999998877788777666 99999999999999888888888777777688999999999999998
Q ss_pred HHHh
Q 011779 467 EVLK 470 (477)
Q Consensus 467 ~~~~ 470 (477)
....
T Consensus 376 ~~~~ 379 (381)
T COG0438 376 ELLA 379 (381)
T ss_pred HHHh
Confidence 8764
|
|
| >cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=177.48 Aligned_cols=328 Identities=17% Similarity=0.121 Sum_probs=200.4
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEE-Eecc------------
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQV-ISAK------------ 140 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v-~~~~------------ 140 (477)
||++++..-+-- ..+.-+.++|++. |+++.++... +-....... +.......+..+ ....
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 75 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVT--FFEILFIIKPDYDLLLGSDSQSLGAQTAG 75 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHH--HHHhhCCCCCCEEEecCCCCCCHHHHHHH
Confidence 467777433211 3577888999887 8999976643 222111111 111101111111 1111
Q ss_pred ---chhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccc----ccchhhHhhcccccccceeeeh
Q 011779 141 ---GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG----HYFKLDYVKHLPLVAGAMIDSH 211 (477)
Q Consensus 141 ---~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~----~~~~~~~~~~~~~~~~~~~~s~ 211 (477)
.........+||+||+|......+.. .+...+ .|++...|+... ..+........+..+.+++.+.
T Consensus 76 ~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~-----iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~ 150 (363)
T cd03786 76 LLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLG-----IPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTE 150 (363)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcC-----CCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCH
Confidence 01233455799999999743322222 222222 345443333221 1111111112345566677777
Q ss_pred hhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc---CCCHHH
Q 011779 212 VTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDL 287 (477)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~---~Kg~~~ 287 (477)
...+.+. .+|++.+++.+++||+ |...+...... ....++.++++++++++++.||... .||++.
T Consensus 151 ~~~~~l~-----~~G~~~~kI~vign~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~ 219 (363)
T cd03786 151 EARRNLL-----QEGEPPERIFVVGNTMIDALLRLLELAK------KELILELLGLLPKKYILVTLHRVENVDDGEQLEE 219 (363)
T ss_pred HHHHHHH-----HcCCCcccEEEECchHHHHHHHHHHhhc------cchhhhhcccCCCCEEEEEeCCccccCChHHHHH
Confidence 7666554 4588889999999996 43322211110 1223457788777788888998775 799999
Q ss_pred HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC-CCcEEEccc--cCCHHHHHHhcCEEEEcC
Q 011779 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK--TLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~v~~~g~--~~~l~~~~~~aDv~v~pS 364 (477)
++++++++.+ .++.+++.|.+ +..+.+++.+.++++ .++|.|+|. .+++..+|+.||++|.+|
T Consensus 220 l~~al~~l~~---------~~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~S 285 (363)
T cd03786 220 ILEALAELAE---------EDVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDS 285 (363)
T ss_pred HHHHHHHHHh---------cCCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcC
Confidence 9999998854 25677776766 567788888888876 678999975 378999999999999998
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCC-CCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
. | +..|||++|+||| +++. +...+.+. +|..+..+ | +++++++|.++++++..+..|.
T Consensus 286 g------g-i~~Ea~~~g~PvI-------~~~~~~~~~~~~~---~g~~~~~~~~--~~~i~~~i~~ll~~~~~~~~~~- 345 (363)
T cd03786 286 G------G-IQEEASFLGVPVL-------NLRDRTERPETVE---SGTNVLVGTD--PEAILAAIEKLLSDEFAYSLMS- 345 (363)
T ss_pred c------c-HHhhhhhcCCCEE-------eeCCCCccchhhh---eeeEEecCCC--HHHHHHHHHHHhcCchhhhcCC-
Confidence 3 3 4799999999999 7654 33556654 44444443 4 8999999999999988776663
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
...|.-...++++.++
T Consensus 346 ------~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 346 ------INPYGDGNASERIVEI 361 (363)
T ss_pred ------CCCCCCCHHHHHHHHH
Confidence 2334444455555444
|
The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st |
| >PRK09814 beta-1,6-galactofuranosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=172.28 Aligned_cols=290 Identities=10% Similarity=0.088 Sum_probs=189.8
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC-cEEEEcCcchhh-H
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA-DLIVLNTAVAGK-W 164 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-DiV~~~~~~~~~-~ 164 (477)
.|+...-.+..+.+.+.|+++..+......... .. ..... ...+....++ |+||+++|.... .
T Consensus 15 ~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~~~-~~-~~~~~-------------~~~~~~~~~~~Dvv~~~~P~~~~~~ 79 (333)
T PRK09814 15 SAALKAKNDVTKIAKQLGFEELGIYFYNIKRDS-LS-ERSKR-------------LDGILASLKPGDIVIFQFPTWNGFE 79 (333)
T ss_pred chHHHHHHHHHHHHHHCCCeEeEEEecccccch-HH-HHHHH-------------HHHHHhcCCCCCEEEEECCCCchHH
Confidence 567788889999999999998766533211100 00 00001 1123334556 999999875532 1
Q ss_pred HHHHhhhCCCccccceeeeeeecccccch------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC
Q 011779 165 LDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (477)
+...+...+.....+++.++|+....... ......++.++.+++.|....+++.+ .|++..++.++++.
T Consensus 80 ~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~~-----~g~~~~~i~~~~~~ 154 (333)
T PRK09814 80 FDRLFVDKLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLVE-----EGLTTDKIIVQGIF 154 (333)
T ss_pred HHHHHHHHHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHHH-----cCCCcCceEecccc
Confidence 11111111112236889999997643221 22345667889999999998888764 36666778777766
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCC
Q 011779 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (477)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~ 318 (477)
.+....... . .+...+.|+|+|++...+++ . + ..++++|+|+|+|+
T Consensus 155 ~~~~~~~~~--------------~---~~~~~~~i~yaG~l~k~~~l----~------~-------~~~~~~l~i~G~g~ 200 (333)
T PRK09814 155 DYLNDIELV--------------K---TPSFQKKINFAGNLEKSPFL----K------N-------WSQGIKLTVFGPNP 200 (333)
T ss_pred ccccccccc--------------c---cccCCceEEEecChhhchHH----H------h-------cCCCCeEEEECCCc
Confidence 543211100 0 01345689999999843211 1 1 12679999999983
Q ss_pred CcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC---------CCCcccHHHHHHHHcCCCEEe
Q 011779 319 NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---------WGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 319 ~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~---------~~E~~g~~~lEAma~G~PvI~ 387 (477)
... ...++|+|+|+. +++..+|+. |+.+.+... ..-.+|.++.|+||+|+|||
T Consensus 201 -----~~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI- 264 (333)
T PRK09814 201 -----EDL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVI- 264 (333)
T ss_pred -----ccc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEE-
Confidence 222 234799999986 889999988 665544320 01257888999999999999
Q ss_pred eccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 388 QKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 388 ~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
+++.++..++|+++.+|++++ + .+++++++..+ +++.+++|++++++.+ +++.--.+++
T Consensus 265 ------~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~-~~~~~g~~~~ 323 (333)
T PRK09814 265 ------VWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKIS-KLLRNGYFTK 323 (333)
T ss_pred ------ECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHH-HHHhcchhHH
Confidence 999999999999999999998 4 78999999885 4577899999999877 4444444433
|
|
| >PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=179.84 Aligned_cols=293 Identities=15% Similarity=0.151 Sum_probs=202.3
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.-|+|.+|...... +..+++...|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.....
T Consensus 231 ~gD~VWVHDYHL~L-lP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLMF-LPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhhH-HHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 44899999855443 34445555554 46778888754332 2222333333445554455555544444333
Q ss_pred hhhccC-----------CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHH
Q 011779 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (477)
Q Consensus 223 ~~~~~~-----------~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a 291 (477)
+.+|.. .-++.+.|.|||.+.|.............+.++++++ ++.+|+.++|+++.||+...++|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 333322 1236678999999999876444333444567888876 56799999999999999999999
Q ss_pred HHHHHHHHHhhccCcCceE--EEEE--ecCCCcchHHHHH----HHHHHHhc----CCCC--cEEEccc---cCCHHHHH
Q 011779 292 FYESLELIKEKKLEVPSVH--AVII--GSDMNAQTKFESE----LRNYVMQK----KIQD--RVHFVNK---TLTVAPYL 354 (477)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~--l~iv--G~g~~~~~~~~~~----l~~~~~~~----~l~~--~v~~~g~---~~~l~~~~ 354 (477)
|.++++ ++|+++ ++++ ......+.+..++ +.+++.+. |-.+ -|+++.. .+++..+|
T Consensus 385 fE~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY 457 (934)
T PLN03064 385 FEKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALY 457 (934)
T ss_pred HHHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHH
Confidence 999887 556643 4444 2211111133334 44443332 2111 1444443 28899999
Q ss_pred HhcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 355 AAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 355 ~~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
+.||++|+||. .||++++..|||+|+. ++| .+..+|..+.+ +..+++++|.| ++++|++|.+.
T Consensus 458 ~~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLI-------LSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~A 524 (934)
T PLN03064 458 AVTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLI-------LSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQA 524 (934)
T ss_pred HhCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeE-------EeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHH
Confidence 99999999999 9999999999999965 566 67888887777 55789999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
+. +++.++++.++.++++ ..+++..+++.+++-+.++.
T Consensus 525 L~M~~~Er~~r~~~~~~~V-~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 525 LNMPEEEREKRHRHNFMHV-TTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HhCCHHHHHHHHHHHHhhc-ccCCHHHHHHHHHHHHHHHH
Confidence 98 8999999999999988 55999999999888777664
|
|
| >TIGR00215 lpxB lipid-A-disaccharide synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=159.59 Aligned_cols=334 Identities=16% Similarity=0.102 Sum_probs=197.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH---hhhhhhhhhcCc-EEE--------eccch
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI---YSLEHKMWDRGV-QVI--------SAKGQ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~g~-~v~--------~~~~~ 142 (477)
.||++.+... ||..+-..++++|+++|+++.++....+.-..... +.+. .+...|+ .++ .....
T Consensus 6 ~ki~i~aGgt---sGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~-~l~v~G~~~~l~~~~~~~~~~~~~ 81 (385)
T TIGR00215 6 PTIALVAGEA---SGDILGAGLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSME-ELSVMGLREVLGRLGRLLKIRKEV 81 (385)
T ss_pred CeEEEEeCCc---cHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCccccChH-HhhhccHHHHHHHHHHHHHHHHHH
Confidence 3576666443 44566559999999999999998855322110000 0000 0111111 000 00111
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHH
Q 011779 143 ETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
+++.+..+||+|++.......+.. ++...+ .|+++++.-....+-....+...+.++.+++.+....+.+.+
T Consensus 82 ~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~g-----ip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~- 155 (385)
T TIGR00215 82 VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPG-----IKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAFYQK- 155 (385)
T ss_pred HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCC-----CCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHHHHh-
Confidence 355567899999999843322222 233333 345543321111111222333446778888888877766542
Q ss_pred hHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEE-e-eccc-CCCHHHHHHHHHHHHH
Q 011779 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYESLE 297 (477)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~v-G-rl~~-~Kg~~~ll~a~~~l~~ 297 (477)
.| .+..++.|++..+.....+ .+...|+++|+++++++|+++ | |..+ .|+++.+++++..+.+
T Consensus 156 ----~g---~~~~~vGnPv~~~~~~~~~-------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~ 221 (385)
T TIGR00215 156 ----KN---VPCRFVGHPLLDAIPLYKP-------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ 221 (385)
T ss_pred ----cC---CCEEEECCchhhhccccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH
Confidence 22 3566788887433221101 135568889998887776655 3 6555 6899999999998866
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
..|++++++.+.+. ...+.+++..+.++...+|.+.+. +...+|++||++|.+| |.+.+|
T Consensus 222 -------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlE 281 (385)
T TIGR00215 222 -------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALE 281 (385)
T ss_pred -------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHH
Confidence 56888887765432 345666666666666566766653 6778999999999998 467779
Q ss_pred HHHcCCCEEee----cccccccc------CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH----HHHHHHHHH
Q 011779 378 AMAFQLPVLLQ----KCLYQGTA------AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV----ERRLTMGKR 443 (477)
Q Consensus 378 Ama~G~PvI~~----~~~~~~~~------~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~----~~~~~~~~~ 443 (477)
||++|+|+|.+ +.++...+ .-+.+.++.+......+-.++.+++.+++.+.++++|+ +.++++.+.
T Consensus 282 a~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~ 361 (385)
T TIGR00215 282 AALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQF 361 (385)
T ss_pred HHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99999999954 22220000 12233444333333333334445899999999999999 888888776
Q ss_pred HHHHHHHhcC
Q 011779 444 GYERVKEIFQ 453 (477)
Q Consensus 444 a~~~~~~~fs 453 (477)
..+.. +...
T Consensus 362 ~~~~~-~~l~ 370 (385)
T TIGR00215 362 FEELR-QRIY 370 (385)
T ss_pred HHHHH-HHhc
Confidence 65543 4444
|
Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA |
| >KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-16 Score=139.28 Aligned_cols=355 Identities=16% Similarity=0.142 Sum_probs=230.9
Q ss_pred ccEEE-EEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch----------
Q 011779 74 SKLVL-LVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------- 142 (477)
Q Consensus 74 ~~~Il-~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------- 142 (477)
+++++ +|..+. |-+-++..-|..|++.|++|.++....+.+ ..+.+....++++.....
T Consensus 12 k~ra~vvVLGDv---GRSPRMqYHA~Sla~~gf~VdliGy~~s~p-------~e~l~~hprI~ih~m~~l~~~~~~p~~~ 81 (444)
T KOG2941|consen 12 KKRAIVVVLGDV---GRSPRMQYHALSLAKLGFQVDLIGYVESIP-------LEELLNHPRIRIHGMPNLPFLQGGPRVL 81 (444)
T ss_pred cceEEEEEeccc---CCChHHHHHHHHHHHcCCeEEEEEecCCCC-------hHHHhcCCceEEEeCCCCcccCCCchhh
Confidence 34444 444444 444668888999999999999999655542 233344556666544322
Q ss_pred --------------hhHHHhcCCcEEEEcCcchhhHHHHHh-hhCCCccccceeeeeeecccc-cchh---------hHh
Q 011779 143 --------------ETINTALKADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGH-YFKL---------DYV 197 (477)
Q Consensus 143 --------------~~~~~~~~~DiV~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~-~~~~---------~~~ 197 (477)
..+.-...+|++.+++|.+...+.... .... .+.+++.++|++... .... ...
T Consensus 82 ~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l--~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~ 159 (444)
T KOG2941|consen 82 FLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSIL--TGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLV 159 (444)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHH--hcceEEEEehhhHHHHHHHhhcCCCCchHHHH
Confidence 122234789999999866544333222 2122 226788888986432 1000 001
Q ss_pred hcc-cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCc-----hh----hhhhhhh---------hHHHHHHHH
Q 011779 198 KHL-PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS-----KE----LMEVAED---------NVAKRVLRE 258 (477)
Q Consensus 198 ~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd-----~~----~~~~~~~---------~~~~~~~~~ 258 (477)
+++ +.+......+..+.+.+++.+.+..|+. +..|++.-.. .+ .|.+... +..+..++.
T Consensus 160 ~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~t 237 (444)
T KOG2941|consen 160 RWLEKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERT 237 (444)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhh
Confidence 111 1122222333344455555555577764 3445442221 11 1222111 111222223
Q ss_pred HHHHhhC------CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 259 HVRESLG------VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 259 ~~r~~~~------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
.+-++.. .++.+.+++..-+..+..++..+++|+...-+++.+.+...|.+-.+|.|.| |..+.+.+.+
T Consensus 238 af~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y~~~I 312 (444)
T KOG2941|consen 238 AFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKYSQEI 312 (444)
T ss_pred hHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHHHHHH
Confidence 3333332 3355567777778899999999999999766666655557799999999999 8999999999
Q ss_pred HhcCCCCcEEEc-cc--cCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC
Q 011779 333 MQKKIQDRVHFV-NK--TLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG 407 (477)
Q Consensus 333 ~~~~l~~~v~~~-g~--~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~ 407 (477)
+++++. +|.+. .+ .+|.+.+++.||+ ++..|.+ .=..|++++....||+||+ +-+..-+.|+|+++
T Consensus 313 ~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvc-------A~~fkcl~ELVkh~ 383 (444)
T KOG2941|consen 313 HEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVC-------AVNFKCLDELVKHG 383 (444)
T ss_pred HHhccc-ceeeeecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCcee-------eecchhHHHHHhcC
Confidence 999886 55543 44 4999999999996 4566653 5568999999999999999 99999999999999
Q ss_pred CceeeecCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011779 408 TTGLLHPVGKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIA 462 (477)
Q Consensus 408 ~~G~l~~~~d~~~~~la~~i~~ll~----~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 462 (477)
+||++|. | -+++++++..+.+ +.....++.+++++.. ...|+..-++..
T Consensus 384 eNGlvF~--D--s~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~--e~RW~~~W~~~~ 436 (444)
T KOG2941|consen 384 ENGLVFE--D--SEELAEQLQMLFKNFPDNADELNQLKKNLREEQ--ELRWDESWERTA 436 (444)
T ss_pred CCceEec--c--HHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHH--hhhHHHHHHHhh
Confidence 9999998 5 7999999999998 8888999999998864 256665554443
|
|
| >TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-17 Score=163.07 Aligned_cols=219 Identities=12% Similarity=0.134 Sum_probs=172.7
Q ss_pred hcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEe
Q 011779 198 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 277 (477)
Q Consensus 198 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vG 277 (477)
..+..++.+++.+......+..++.... ...++..||.+.- ... +.... ..+..+++++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~--~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~ 326 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENY--VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFW 326 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcc--cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEE
Confidence 4456777778777666666665443211 1234667775543 211 11100 2334566778
Q ss_pred --ecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-----------------
Q 011779 278 --SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ----------------- 338 (477)
Q Consensus 278 --rl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~----------------- 338 (477)
|+ ++|.++.+++++.++.+ ++|+++|.+.|.+.. ..+.+.+++.++++++.
T Consensus 327 idrL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 327 IDGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNND--NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred cCCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCc--hhHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 99 99999999999999987 789999999998742 13457777777777666
Q ss_pred ------------CcEEEccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe
Q 011779 339 ------------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV 404 (477)
Q Consensus 339 ------------~~v~~~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v 404 (477)
++|.|.|... ++.+.|..+.++|.+|. .|+|+ +.+||++.|+|+| +. |..++|
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---------ny-g~~~~V 463 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---------NK-VETDYV 463 (519)
T ss_pred hcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---------ec-CCceee
Confidence 7999999886 99999999999999999 99999 9999999999999 22 457999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 405 VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 405 ~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.+++||+++ +| .++|++++..++.+++.+.++...+.+.+ +.||-+++.++|.+++
T Consensus 464 ~d~~NG~li--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~-~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 464 EHNKNGYII--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLI-DDYSSENIIERLNELI 519 (519)
T ss_pred EcCCCcEEe--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhhC
Confidence 999999999 56 99999999999999999999999999988 6699999999998753
|
This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >TIGR02094 more_P_ylases alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=160.77 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=146.7
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch---HHHHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~---~~~~~l~~~~~~~~l~~~v~ 342 (477)
++++.+++++++|+..+||+++++.++.++.+.+.+ ...+++|++.|.+.+.+. .+.+.+.+++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~---~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNN---PERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhC---CCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 457788999999999999999999999998754332 113699999999864321 25666777777655667888
Q ss_pred Ecc-ccCCHHH-HHHhcCEEEE-cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC----
Q 011779 343 FVN-KTLTVAP-YLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV---- 415 (477)
Q Consensus 343 ~~g-~~~~l~~-~~~~aDv~v~-pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~---- 415 (477)
|+- +...++. ++++||++++ ||+. .|++|++-+-||..|.+.+ ++.-|...|.. ++.||+.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~-------sv~DG~~~E~~-~~~nGf~f~~~~~~ 532 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNL-------SILDGWWGEGY-DGDNGWAIGDGEEY 532 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCcee-------ecccCcccccC-CCCcEEEECCCccc
Confidence 865 5444544 5899999999 9985 8999999999999999999 88888887876 6679999984
Q ss_pred --------CCCCHHHHHHHHHHHH-----hC-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 416 --------GKEGITPLAKNIVKLA-----TH-----VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 416 --------~d~~~~~la~~i~~ll-----~~-----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.| .++|.++|++.+ ++ |..+.+|.+++.+.....|||++++++|.+.|
T Consensus 533 ~~~~~~d~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 533 DDEEEQDRLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred cccccccCCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997655 23 55678888888776555799999999999887
|
This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343. |
| >PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-18 Score=140.79 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=97.4
Q ss_pred CeEEEEEeecccCCCHHHHHH-HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 270 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~-a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
-++|+++|++.+.|+++.+++ ++.++.+ +.|+++|+|+|.++ . +++++ ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 468899999999999999999 9999877 67899999999974 2 23333 225999999998
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
++.++|+.||+++.|+.. .++++.+++|||++|+||| +++. +..+++.....|.++ .+| +++++++|.
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi-------~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~ 130 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVI-------ASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIE 130 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EE-------EEHH-HCHCHS---SEEEE--TT---HHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEE-------ECCc-chhhheeecCCeEEE-CCC--HHHHHHHHH
Confidence 999999999999999963 6799999999999999999 8888 566666555677777 666 999999999
Q ss_pred HHHhC
Q 011779 429 KLATH 433 (477)
Q Consensus 429 ~ll~~ 433 (477)
++++|
T Consensus 131 ~l~~d 135 (135)
T PF13692_consen 131 RLLND 135 (135)
T ss_dssp HHHH-
T ss_pred HHhcC
Confidence 99875
|
|
| >PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-14 Score=134.27 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=178.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec-----cc-------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG------- 141 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-----~~------- 141 (477)
|++|++.+... ||--.-...++++|.++||+|.+++...+-... .+...|+....+ +.
T Consensus 1 ~~~i~~~~GGT--GGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~ 70 (352)
T PRK12446 1 MKKIVFTGGGS--AGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNI 70 (352)
T ss_pred CCeEEEEcCCc--HHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHH
Confidence 34676666332 332244789999999999999999966543211 111223322111 10
Q ss_pred ------------hhhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccccchhhHhhccccccccee
Q 011779 142 ------------QETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMI 208 (477)
Q Consensus 142 ------------~~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~ 208 (477)
...+.+..+||+||.+....+.. ..++...++| ..+|+.+... ....+...++++.++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p-------~~i~e~n~~~-g~~nr~~~~~a~~v~~ 142 (352)
T PRK12446 71 KDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVP-------VLLHESDMTP-GLANKIALRFASKIFV 142 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCC-------EEEECCCCCc-cHHHHHHHHhhCEEEE
Confidence 01445678999999987544322 2233333332 2356654322 2222223344444443
Q ss_pred eehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
....... +++.+++.+..|++..+..... ++..++.+++++++++|+.+|.-. |-..+
T Consensus 143 ~f~~~~~----------~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS~---Ga~~i 200 (352)
T PRK12446 143 TFEEAAK----------HLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGSL---GAKKI 200 (352)
T ss_pred Eccchhh----------hCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCcc---chHHH
Confidence 3322111 2455678888888877653211 244566788877777776665422 33333
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-CCHHHHHHhcCEEEEcCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-~~l~~~~~~aDv~v~pS~~ 366 (477)
-+++.++...+. .++++++ +|.. .+.+.... . .++...++. +++.++|+.||++|.-+
T Consensus 201 n~~~~~~l~~l~------~~~~vv~~~G~~-----~~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIsr~-- 260 (352)
T PRK12446 201 NETVREALPELL------LKYQIVHLCGKG-----NLDDSLQN----K---EGYRQFEYVHGELPDILAITDFVISRA-- 260 (352)
T ss_pred HHHHHHHHHhhc------cCcEEEEEeCCc-----hHHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEECC--
Confidence 333333322211 2366554 5544 22222221 1 244556777 78999999999999443
Q ss_pred CCCcccHHHHHHHHcCCCEEeecccccccc---CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHH
Q 011779 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTA---AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 443 (477)
Q Consensus 367 ~~E~~g~~~lEAma~G~PvI~~~~~~~~~~---~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~ 443 (477)
-+.++.|++++|+|.|..+.++ ... .-...+.+.+...|..+...+.+++.+.+++.++++|++.+++ +
T Consensus 261 ----G~~t~~E~~~~g~P~I~iP~~~-~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~ 332 (352)
T PRK12446 261 ----GSNAIFEFLTLQKPMLLIPLSK-FASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---A 332 (352)
T ss_pred ----ChhHHHHHHHcCCCEEEEcCCC-CCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---H
Confidence 4789999999999999655443 111 1122344555556777666655689999999999988876532 2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 011779 444 GYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+ +.+.....++++.+++.
T Consensus 333 ~-----~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 333 L-----KKYNGKEAIQTIIDHIS 350 (352)
T ss_pred H-----HHcCCCCHHHHHHHHHH
Confidence 2 22444455555555443
|
|
| >COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-14 Score=132.93 Aligned_cols=300 Identities=17% Similarity=0.116 Sum_probs=181.5
Q ss_pred CchhhHHHHHHHHHHhCCcE-EEEEecCCCCChhhHHhhhhhhhhhcCcEEEec--cc----------------------
Q 011779 87 SGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KG---------------------- 141 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--~~---------------------- 141 (477)
||--.-...++++|.++|++ |.++.....-... .....++++..+ ..
T Consensus 11 GGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~--------l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (357)
T COG0707 11 GGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF--------LVKQYGIEFELIPSGGLRRKGSLKLLKAPFKLLKGVLQ 82 (357)
T ss_pred ccchhHHHHHHHHHHhhCccEEEEecccccceee--------eccccCceEEEEecccccccCcHHHHHHHHHHHHHHHH
Confidence 34336688999999999995 5555332221110 111113333211 00
Q ss_pred hhhHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHH
Q 011779 142 QETINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
.+.+.+..+||+|+....... ....++...++| + .+|+... .....++...++++.+.......
T Consensus 83 a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iP-----v--~ihEqn~-~~G~ank~~~~~a~~V~~~f~~~------- 147 (357)
T COG0707 83 ARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIP-----V--IIHEQNA-VPGLANKILSKFAKKVASAFPKL------- 147 (357)
T ss_pred HHHHHHHcCCCEEEecCCccccHHHHHHHhCCCC-----E--EEEecCC-CcchhHHHhHHhhceeeeccccc-------
Confidence 135667799999999764333 223333333333 3 3666532 22222222223333333322221
Q ss_pred hHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHH
Q 011779 221 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 300 (477)
Q Consensus 221 ~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~ 300 (477)
.-+.+.+++.+..|++..+.+. .+. ...+.... .++++|+++|.- .|...+-+++.++...+.
T Consensus 148 ---~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~--~~~~~ilV~GGS---~Ga~~ln~~v~~~~~~l~ 210 (357)
T COG0707 148 ---EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGR--LDKKTILVTGGS---QGAKALNDLVPEALAKLA 210 (357)
T ss_pred ---cccCCCCceEEecCcccHHhhc-cch--------hhhhhhcc--CCCcEEEEECCc---chhHHHHHHHHHHHHHhh
Confidence 1234556799999999888765 222 11222222 256666666542 344444444444443222
Q ss_pred hhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH
Q 011779 301 EKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 301 ~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
.+++++. +|.+ ..++++....+++. +.+.++.+++..+|++||++|.-+ -++++.|..
T Consensus 211 ------~~~~v~~~~G~~------~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsRa------Ga~Ti~E~~ 269 (357)
T COG0707 211 ------NRIQVIHQTGKN------DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISRA------GALTIAELL 269 (357)
T ss_pred ------hCeEEEEEcCcc------hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeCC------cccHHHHHH
Confidence 1466654 4444 35666666666654 889999999999999999999443 469999999
Q ss_pred HcCCCEEeeccccccccCC--CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 380 AFQLPVLLQKCLYQGTAAG--GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 380 a~G~PvI~~~~~~~~~~~g--g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++|+|+|..|.+. +.+.- -.+..+++...|.+++..+..++.+.+.|.+++++++..++|.+++++..
T Consensus 270 a~g~P~IliP~p~-~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 270 ALGVPAILVPYPP-GADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeCCCC-CccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999999887776 43221 13455666678888887776789999999999999999999999998755
|
|
| >cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=143.52 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=147.2
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH---HHHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~v~ 342 (477)
++++.++|+++.|+..+||.++++..+.++.+.+.+. ..+++|+|.|.+.+.+.+ +.+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 4577789999999999999999999999987655431 135999999998654432 3445555565545667888
Q ss_pred Ecc-ccCCHH-HHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC---
Q 011779 343 FVN-KTLTVA-PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK--- 417 (477)
Q Consensus 343 ~~g-~~~~l~-~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d--- 417 (477)
|+. +...++ .+++.||++++||+.-.|..|++-+-||..|.+-+ ++.-|...|.- ++.||+.+..+.
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~Lnl-------SvlDGww~E~~-~g~nGwaig~~~~~~ 622 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNL-------SVLDGWWDEGY-DGENGWAIGDGDEYE 622 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeee-------ecccCcccccc-CCCCceEeCCCcccc
Confidence 875 444444 45899999999998668999999999999999999 88888888877 788999998832
Q ss_pred -------CCHHHHHHHHHHHHh----C------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 418 -------EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 418 -------~~~~~la~~i~~ll~----~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.+.++|.+.|++-+- + |..+.+|.+++.+.+...|||++|+++|.+-|
T Consensus 623 ~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 623 DDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred ChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 236777777755333 3 66788888888887778999999999997644
|
Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea. |
| >PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-13 Score=130.62 Aligned_cols=296 Identities=17% Similarity=0.126 Sum_probs=178.0
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|....... ...++.+.|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+....
T Consensus 140 ~~~D~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTH-HHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHH-HHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 4679999998655443 4455555554 57888888754322 222333334455555555555565555555
Q ss_pred HhhhccC--C-----------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 222 RERLRIK--M-----------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 222 ~~~~~~~--~-----------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
.+.+|.. . -++.+.|-|||.+.+.............+.++++++ .+..+|+.+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4454432 1 137788999999988765544333444567888876 345888899999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH----HHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHH
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~ 355 (477)
+.||+++.+..++ -..++.|+-++.......+ +..++.+++.+ +|-.+ .|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~---~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPE---YRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GG---GTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcC---ccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 9999999986665 2355788766654332222 45555555543 33322 2555543 388999999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCC----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~P----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
.||+++.+|. .+|+-++..|+.+|..+ +| .|...|..+.+ ++..++++|.| ++++|++|.+.+
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLi-------LSefaGaa~~L--~~~al~VNP~d--~~~~A~ai~~AL 438 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLI-------LSEFAGAAEQL--SEAALLVNPWD--IEEVADAIHEAL 438 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEE-------EETTBGGGGT---TTS-EEE-TT---HHHHHHHHHHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceE-------eeccCCHHHHc--CCccEEECCCC--hHHHHHHHHHHH
Confidence 9999999999 99999999999999875 55 78888888877 33459999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+ .++.++..-+..++.+ ..++...+++.+++-++
T Consensus 439 ~M~~~Er~~r~~~~~~~v-~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 439 TMPPEERKERHARLREYV-REHDVQWWAESFLRDLK 473 (474)
T ss_dssp T--HHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-HhCCHHHHHHHHHHHhh
Confidence 9 7777777777778877 45899999998876554
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B. |
| >PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-13 Score=129.56 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=146.6
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhH-HHHHHHH---H-HHHhh----CCC-CCC
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV-AKRVLRE---H-VRESL----GVR-NED 270 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~-~~~~~~~---~-~r~~~----~~~-~~~ 270 (477)
..++.+.++|..++.....- ++ ...-.|+|||++.+.|....+-. .+...++ + ++..+ +++ ++.
T Consensus 220 ~~AdvFTTVSeITa~Ea~~L----L~--r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~t 293 (633)
T PF05693_consen 220 HYADVFTTVSEITAKEAEHL----LK--RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKT 293 (633)
T ss_dssp HHSSEEEESSHHHHHHHHHH----HS--S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGE
T ss_pred HhcCeeeehhhhHHHHHHHH----hC--CCCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccce
Confidence 46677778888888776653 22 23347889999998765543211 1111122 2 23332 333 345
Q ss_pred eEEEEEeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCC------------------------------
Q 011779 271 LLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN------------------------------ 319 (477)
Q Consensus 271 ~~il~vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~------------------------------ 319 (477)
+.|...||... .||+|.+|+|+.+|...++..+....=+-|+|+-....
T Consensus 294 l~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~ 373 (633)
T PF05693_consen 294 LYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKR 373 (633)
T ss_dssp EEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899877 89999999999999876665211111133444433211
Q ss_pred ----------------cc----------------------------hHHHHHHHHHHHhcCCC----Cc--EEEccc---
Q 011779 320 ----------------AQ----------------------------TKFESELRNYVMQKKIQ----DR--VHFVNK--- 346 (477)
Q Consensus 320 ----------------~~----------------------------~~~~~~l~~~~~~~~l~----~~--v~~~g~--- 346 (477)
-. ....+.+...++++++. ++ |+|++.
T Consensus 374 ~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~ 453 (633)
T PF05693_consen 374 LFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLS 453 (633)
T ss_dssp HHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---
T ss_pred HHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecccc
Confidence 00 00123344444555542 22 566652
Q ss_pred ------cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-----CCcee-eec
Q 011779 347 ------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-----GTTGL-LHP 414 (477)
Q Consensus 347 ------~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-----~~~G~-l~~ 414 (477)
.-+..+++..||+.|+||+ +|+||.+.+|+.++|+|.| +|+..|....+.+ ...|. +++
T Consensus 454 ~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsI-------TTnLsGFG~~~~~~~~~~~~~GV~Vvd 524 (633)
T PF05693_consen 454 GTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSI-------TTNLSGFGCWMQEHIEDPEEYGVYVVD 524 (633)
T ss_dssp TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EE-------EETTBHHHHHHHTTS-HHGGGTEEEE-
T ss_pred CCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCcee-------eccchhHHHHHHHhhccCcCCcEEEEe
Confidence 1568899999999999999 9999999999999999999 9999987755542 23444 444
Q ss_pred CCCCCHHH----HHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 415 VGKEGITP----LAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 415 ~~d~~~~~----la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
-.+.+.++ +++.|..+.. +...+..++.++.+.. +.++|+++...|.+.|..++++.
T Consensus 525 R~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS-~~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 525 RRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS-DLADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG-GGGBHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhc
Confidence 44444444 5555555554 6666777777776544 78999999999999999888754
|
Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D. |
| >PRK10117 trehalose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-12 Score=123.50 Aligned_cols=297 Identities=10% Similarity=0.040 Sum_probs=200.5
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|.+|.-..... ...+....+. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.+..
T Consensus 122 ~~~D~VWVHDYhL~ll-p~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLPF-ASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhHH-HHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 3458999998655443 3334444443 46778888754322 222233333344444444444444444433
Q ss_pred HhhhccCC------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 222 RERLRIKM------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 222 ~~~~~~~~------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
...+|... -++.+.|-|||.+.|........ ....+.++++++ ++.+|+.+.|++.-||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 33332211 23678899999998876544322 233567777775 466888899999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcc----hHHHHHHHHHHHhc----CCCC--cEEEccc---cCCHHHHHHh
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLAA 356 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~~----~l~~--~v~~~g~---~~~l~~~~~~ 356 (477)
+||+++.+..++ -..++.|+-+...+-.+ ..++.++++++.+. |-.+ -|.++.. .+++..+|+.
T Consensus 275 ~Afe~fL~~~Pe---~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQ---HHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChh---hcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 999999885554 22457777665432222 23445555555432 3222 2455443 2778899999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCC-----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQL-----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
||+++.++. .+|+-++..|+.+|.. ++| .|...|..+.+. ..++++|.| ++++|++|.+.+
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLI-------LSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL 417 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLV-------LSQFAGAANELT---SALIVNPYD--RDEVAAALDRAL 417 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEE-------EecccchHHHhC---CCeEECCCC--HHHHHHHHHHHH
Confidence 999999999 9999999999999975 266 888888887772 479999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+ .++.+++.-+..++.+ ..++...+++.+++-+..+..
T Consensus 418 ~Mp~~Er~~R~~~l~~~v-~~~dv~~W~~~fL~~L~~~~~ 456 (474)
T PRK10117 418 TMPLAERISRHAEMLDVI-VKNDINHWQECFISDLKQIVP 456 (474)
T ss_pred cCCHHHHHHHHHHHHHHh-hhCCHHHHHHHHHHHHHHhhh
Confidence 9 6777777777777777 558999999999888877643
|
|
| >PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-14 Score=106.93 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.5
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
+++.|+. .++++..++|+||||+||| +.+.++..+++.++..++.++ | ++++.+++..+++||+.++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi-------~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~ 67 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVI-------SDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERR 67 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEE-------ECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHH
Confidence 4677888 7999999999999999999 999999999999998999988 5 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
+++++|++.++++|+|+..++++++
T Consensus 68 ~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 68 RIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 9999999999999999999998863
|
|
| >PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-11 Score=126.58 Aligned_cols=297 Identities=10% Similarity=0.053 Sum_probs=198.3
Q ss_pred cEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHhHhh
Q 011779 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (477)
|+|.+|....... ..+++...|. .++.+.+|...+.. +.....+.+-.+|.+--.+...+..+.....+.
T Consensus 203 d~VWVhDYhL~ll-P~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVL-PTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHH-HHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999998655443 3444454554 47778888754332 222333333445555455555554444433333
Q ss_pred hccCC---------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 225 LRIKM---------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 225 ~~~~~---------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
+|+.. -++.+.|-|||.+.|.............++++++++- +++.+|+-+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 33321 2367889999999887654433333345677887762 3567888999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcc----hHHHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHHh
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLAA 356 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~~ 356 (477)
.||+++++..++ -..++.|+-+....... ..+..++.+++.+ +|-.+ .|+++.. .+++..+|+.
T Consensus 359 ~A~e~~L~~~P~---~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPE---WQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCcc---ccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 999999884333 11245676555432211 1234444455443 33222 3566543 2889999999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCC-------------------CEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~-------------------PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
||+++.++. .+|+-++..|+.+|.. .+| .|...|....+. ..++++|.|
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLi-------LSEfaGaa~~L~---~Ai~VNP~d 503 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLV-------VSEFIGCSPSLS---GAIRVNPWN 503 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceE-------eeeccchhHHhC---cCeEECCCC
Confidence 999999999 9999999999999854 255 677777766552 479999999
Q ss_pred CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 418 EGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 418 ~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++|++|.+.+. .++.++..-+..++++ ..++...+++.++.-++++..
T Consensus 504 --~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 504 --IDAVADAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERTCR 554 (854)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 5566666666777777 558999999998877776643
|
|
| >TIGR02919 accessory Sec system glycosyltransferase GtfB | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-12 Score=122.21 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=138.2
Q ss_pred ccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec
Q 011779 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (477)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl 279 (477)
....+.+++.+......+.+++ . +..++.++|-|+=.. + .... ..+..+++++.
T Consensus 237 ~~~~~~iIv~T~~q~~di~~r~----~-~~~~~~~ip~g~i~~-~--~~~~-----------------r~~~~~l~~t~- 290 (438)
T TIGR02919 237 ETRNKKIIIPNKNEYEKIKELL----D-NEYQEQISQLGYLYP-F--KKDN-----------------KYRKQALILTN- 290 (438)
T ss_pred ccccCeEEeCCHHHHHHHHHHh----C-cccCceEEEEEEEEe-e--cccc-----------------CCcccEEEECC-
Confidence 3677777777766566555533 2 245677788776522 1 0000 12234445552
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC-CHHHHHHhcC
Q 011779 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAID 358 (477)
Q Consensus 280 ~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-~l~~~~~~aD 358 (477)
+..|+++.++.+ +.|+++|.| |.+. +....|.++ +++ ++.+.+.|... ++.++|..||
T Consensus 291 ------s~~I~~i~~Lv~-------~lPd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~d 349 (438)
T TIGR02919 291 ------SDQIEHLEEIVQ-------ALPDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCD 349 (438)
T ss_pred ------HHHHHHHHHHHH-------hCCCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhcc
Confidence 889999999988 779999999 8774 335777777 666 56777888765 9999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
+++..|. .|++++++.||+..|+|++ +.+.. |..+++.+ |.+++.++ +++++++|.+++.+++..
T Consensus 350 lyLdin~--~e~~~~al~eA~~~G~pI~-------afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~ 415 (438)
T TIGR02919 350 IYLDINH--GNEILNAVRRAFEYNLLIL-------GFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQF 415 (438)
T ss_pred EEEEccc--cccHHHHHHHHHHcCCcEE-------EEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHH
Confidence 9999999 9999999999999999999 77654 45677755 89999998 999999999999999776
Q ss_pred HHHHHHHHHHH
Q 011779 438 LTMGKRGYERV 448 (477)
Q Consensus 438 ~~~~~~a~~~~ 448 (477)
++.-..-++.+
T Consensus 416 ~~~~~~q~~~a 426 (438)
T TIGR02919 416 RELLEQQREHA 426 (438)
T ss_pred HHHHHHHHHHh
Confidence 66555444443
|
Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. |
| >COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=111.20 Aligned_cols=296 Identities=15% Similarity=0.124 Sum_probs=199.9
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
.+=|+|.+|.-.... +..+++..+|.. ++.+.+|...+.. +...+...+-.++.+--.+...+.-+....
T Consensus 146 ~~gDiIWVhDYhL~L-~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLLL-VPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhhh-hHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 456999999755543 345566666653 6778888654321 222233333334444444444444443333
Q ss_pred Hhhhc-------------cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHH
Q 011779 222 RERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (477)
Q Consensus 222 ~~~~~-------------~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~l 288 (477)
.+..+ -..-++...|-|+|...|............-.++++.++ .++.+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCcHHH
Confidence 22221 122357788999999988776544333333566777776 447888899999999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchH----HHHHHHHHHHh----cCCCC--cEEEccc---cCCHHHHHH
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~----~~l~~--~v~~~g~---~~~l~~~~~ 355 (477)
+.||.+++...++ -..++.|+-++..+..+-+ ++.++++.+.+ +|-.+ -|+|+.. .+++..+|.
T Consensus 301 l~Afe~lL~~~Pe---~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPE---WRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChh---hhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 9999999985554 2345777777765444333 34444444443 23211 3455543 277999999
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCC----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQL----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
.||+++.++. .+|+-++..|+.+|-- |.| -|...|....+.+ .++++|.| .++++++|.+.+
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~Li-------LSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL 443 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLI-------LSEFAGAASELRD---ALIVNPWD--TKEVADAIKRAL 443 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEE-------Eeccccchhhhcc---CEeECCCC--hHHHHHHHHHHh
Confidence 9999999999 9999999999999854 666 7777777766633 79999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+ .++.+++.-+..++.+ ..++...+++.+++-+..
T Consensus 444 ~m~~eEr~~r~~~~~~~v-~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 444 TMSLEERKERHEKLLKQV-LTHDVARWANSFLDDLAQ 479 (486)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHh
Confidence 9 7777777667777777 457999999887766654
|
|
| >TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-11 Score=110.07 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=146.5
Q ss_pred EEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------hh
Q 011779 76 LVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QE 143 (477)
Q Consensus 76 ~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------~~ 143 (477)
||+|.+....- |.|. .+...||++|.++|++|.+++...+. .+...+...|..++.++. ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~-------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPG-------DLIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH-------HHHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 47777765444 5444 77899999999999999999976543 234456677888865543 22
Q ss_pred hHHHhcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 144 TINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
...+..+||+|++..... ..+... .+... +++ ..+.+.....+ .+|.++..+.. .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~~-~k~~~----~~l-~~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEKL-IKEFG----RKI-LVIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHH-HHHhC----CeE-EEEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 445566899999976433 333333 33222 222 22333211111 23433333332 22111
Q ss_pred hhhc-cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 223 ERLR-IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 223 ~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
..+ .+... ...-|.+.-...+...... .....+ .+.+.++++.|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~eF~~~~----~~~~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLREEFYQLA----TANKRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhHHHHHhh----Hhhhcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 111 23232 2344665443322211100 000011 023456778888777666677778777542
Q ss_pred hccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH
Q 011779 302 KKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (477)
Q Consensus 302 ~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma 380 (477)
+++++ +++|.+. +..+++++.++.. +++.+.++++++.++|+.||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~----~~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSN----PNLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCC----cCHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 23333 3777764 3456777777654 4899999999999999999999963 3689999999
Q ss_pred cCCCEE
Q 011779 381 FQLPVL 386 (477)
Q Consensus 381 ~G~PvI 386 (477)
+|+|+|
T Consensus 259 ~g~P~i 264 (279)
T TIGR03590 259 LGLPSL 264 (279)
T ss_pred cCCCEE
Confidence 999999
|
This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases. |
| >COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-10 Score=103.29 Aligned_cols=332 Identities=16% Similarity=0.155 Sum_probs=201.6
Q ss_pred chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE--ecc---chhhHHHhcCCcEEEEcCcc
Q 011779 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SAK---GQETINTALKADLIVLNTAV 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~~---~~~~~~~~~~~DiV~~~~~~ 160 (477)
|-.+.+..|.++|.++ ++.+.+-|..+... + .....+.. .+.+. |+. ..+++.+..+||++++--..
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~-e----~a~~~~~~-~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtE 133 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGA-E----RAAALFGD-SVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETE 133 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHH-H----HHHHHcCC-CeEEEecCcCchHHHHHHHHhcCCCEEEEEecc
Confidence 5458899999999998 66666655332221 1 01112211 23333 332 23567778899998775422
Q ss_pred -hhhHHHHHhhhCCCccccceeeeeeecccc-cchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC
Q 011779 161 -AGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 161 -~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng 238 (477)
-...+......++|.+...--.+.+..... ..+......++.++.+++.+....+.+. .+|.++ +.+.-|=
T Consensus 134 lWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GNl 206 (419)
T COG1519 134 LWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGNL 206 (419)
T ss_pred ccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecce
Confidence 222333344445543322111111111111 1223345566788889988888887766 456544 5554442
Q ss_pred CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhccCcCceEEEEEecC
Q 011779 239 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 317 (477)
Q Consensus 239 vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g 317 (477)
-.+. .+ +.........+|..++.+ +.+++..+. ..|= +.++++++.+++ ++|+..+++|=.-
T Consensus 207 -Kfd~-~~---~~~~~~~~~~~r~~l~~~--r~v~iaaST---H~GEeei~l~~~~~l~~-------~~~~~llIlVPRH 269 (419)
T COG1519 207 -KFDI-EP---PPQLAAELAALRRQLGGH--RPVWVAAST---HEGEEEIILDAHQALKK-------QFPNLLLILVPRH 269 (419)
T ss_pred -eecC-CC---ChhhHHHHHHHHHhcCCC--CceEEEecC---CCchHHHHHHHHHHHHh-------hCCCceEEEecCC
Confidence 1111 11 111122356788888754 556666665 3444 448899999887 7899999999876
Q ss_pred CCcchHHHHHHHHHHHhcCCC------------C-cEEEccccCCHHHHHHhcCEEEEc-CCCCCCcccHHHHHHHHcCC
Q 011779 318 MNAQTKFESELRNYVMQKKIQ------------D-RVHFVNKTLTVAPYLAAIDVLVQN-SQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 318 ~~~~~~~~~~l~~~~~~~~l~------------~-~v~~~g~~~~l~~~~~~aDv~v~p-S~~~~E~~g~~~lEAma~G~ 383 (477)
+ +-...+++++++.|+. + +|.+....-++..+|..+|+.++- |. .+--|--++|+.++|+
T Consensus 270 p----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~~~ 343 (419)
T COG1519 270 P----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAFGT 343 (419)
T ss_pred h----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHcCC
Confidence 4 4567788888887762 1 222222237799999999996554 54 4455788999999999
Q ss_pred CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 384 PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
|||. +|+ ..+...+.+-+...+.|+.++ | .+.+++++..++.|++.+++|++++.+.+.++ ....+++.+
T Consensus 344 pvi~--Gp~-~~Nf~ei~~~l~~~ga~~~v~--~--~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~---~gal~r~l~ 413 (419)
T COG1519 344 PVIF--GPY-TFNFSDIAERLLQAGAGLQVE--D--ADLLAKAVELLLADEDKREAYGRAGLEFLAQN---RGALARTLE 413 (419)
T ss_pred CEEe--CCc-cccHHHHHHHHHhcCCeEEEC--C--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---hHHHHHHHH
Confidence 9994 333 345555555455555677766 4 68899999988889999999999999988653 224444444
Q ss_pred HH
Q 011779 464 VL 465 (477)
Q Consensus 464 ~~ 465 (477)
.+
T Consensus 414 ~l 415 (419)
T COG1519 414 AL 415 (419)
T ss_pred Hh
Confidence 43
|
|
| >PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-13 Score=118.03 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=83.7
Q ss_pred EEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHH-hhhhhh-hhhcCcEE---EeccchhhHHHhcC
Q 011779 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHK-MWDRGVQV---ISAKGQETINTALK 150 (477)
Q Consensus 77 Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~~~-~~~~g~~v---~~~~~~~~~~~~~~ 150 (477)
|+++... ...||+++++.+|+++|+++||+|++++........... ...... ........ ..........+..+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 3455544 344999999999999999999999999966554322110 000000 00000000 01111234556679
Q ss_pred CcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc-------c-c-chh----hHhhcccccccceeeehhhHHHH
Q 011779 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------H-Y-FKL----DYVKHLPLVAGAMIDSHVTAEYW 217 (477)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------~-~-~~~----~~~~~~~~~~~~~~~s~~~~~~~ 217 (477)
||+||+|......+...... ..+++++.|+... . . ... .....++..+.+++.|..+.+.+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l 154 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDEL 154 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHH
Confidence 99999998554433332222 2578889998752 0 1 111 11222467888999998888876
Q ss_pred HHHhHhhhccCCCCeEEEecCCchhhh
Q 011779 218 KNRTRERLRIKMPDTYVVHLGNSKELM 244 (477)
Q Consensus 218 ~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (477)
.+ +|+++.++.|||||+|.+.|
T Consensus 155 ~~-----~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 155 IK-----FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HH-----HT--SS-EEE----B-CCCH
T ss_pred HH-----hCCcccCCEEEECCccHHHc
Confidence 63 57888999999999999877
|
|
| >TIGR03492 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=111.29 Aligned_cols=318 Identities=13% Similarity=0.033 Sum_probs=172.6
Q ss_pred Cchh-hHHHHHHHHHHh--CCcEEE---EEecCCCCChhhHHh-hhhhhhhhcCcEEEec-c--------------chhh
Q 011779 87 SGGP-LLLMELAFLLRG--VGTKVN---WITIQKPSEEDEVIY-SLEHKMWDRGVQVISA-K--------------GQET 144 (477)
Q Consensus 87 gG~~-~~~~~l~~~L~~--~G~~V~---v~~~~~~~~~~~~~~-~~~~~~~~~g~~v~~~-~--------------~~~~ 144 (477)
|-+| .....++++|.+ .|++|. ++....+........ .-...+...|+.-... . ....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g~~~~~~sgg~~~~~~~~~~~~~~~gl~~~~~~~~~ 85 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIGPTKELPSGGFSYQSLRGLLRDLRAGLVGLTLGQWR 85 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeCCCCCCCCCCccCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 4445 778899999998 699999 665443321100000 0000001111110000 0 0013
Q ss_pred HHHhc--CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--------------chhh------Hhhcc-c
Q 011779 145 INTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLD------YVKHL-P 201 (477)
Q Consensus 145 ~~~~~--~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------~~~~------~~~~~-~ 201 (477)
+.+.. +||+|++..... .+..+...++|.. ++-.|+....+ +... ..+.. +
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v--~~~aA~~~~~p~~----~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~ 159 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIV--PLLFAWLSGKPYA----FVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSR 159 (396)
T ss_pred HHHHHhhcCCEEEEECcHH--HHHHHHHcCCCce----EEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhch
Confidence 33456 999999987655 2333444455433 32334432110 0101 12222 4
Q ss_pred ccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~ 280 (477)
.++.+++......+.+.+ .| .++.++-|++-....... + .+++++.. ++++-|+-.
T Consensus 160 ~a~~v~~~~~~t~~~l~~-----~g---~k~~~vGnPv~d~l~~~~---------~------~~l~~~~~~lllLpGSR~ 216 (396)
T TIGR03492 160 RCLAVFVRDRLTARDLRR-----QG---VRASYLGNPMMDGLEPPE---------R------KPLLTGRFRIALLPGSRP 216 (396)
T ss_pred hhCEEeCCCHHHHHHHHH-----CC---CeEEEeCcCHHhcCcccc---------c------cccCCCCCEEEEECCCCH
Confidence 455555555555555442 23 267777777643322110 0 03444443 444444432
Q ss_pred c--CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC--------------CcEEEc
Q 011779 281 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVHFV 344 (477)
Q Consensus 281 ~--~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--------------~~v~~~ 344 (477)
. .++.+.+++++.++.+ + +++++++.-.+. ...+.+++..++.+.. +++.+.
T Consensus 217 ae~~~~lp~~l~al~~L~~-------~-~~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~ 284 (396)
T TIGR03492 217 PEAYRNLKLLLRALEALPD-------S-QPFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVL 284 (396)
T ss_pred HHHHccHHHHHHHHHHHhh-------C-CCeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEE
Confidence 2 5677899999998854 4 677777654221 2445566666654543 236666
Q ss_pred cccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCc---eEEeecC----CceeeecCCC
Q 011779 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT---TEIVVNG----TTGLLHPVGK 417 (477)
Q Consensus 345 g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~---~e~v~~~----~~G~l~~~~d 417 (477)
.+..++..+|+.||++|..| |.+..|++++|+|+|. ....+. ..+.+.. ..+......+
T Consensus 285 ~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Il-------ip~~~~q~na~~~~~~~~l~g~~~~l~~~~ 350 (396)
T TIGR03492 285 LGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQ-------LPGKGPQFTYGFAEAQSRLLGGSVFLASKN 350 (396)
T ss_pred echHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEE-------EeCCCCHHHHHHHHhhHhhcCCEEecCCCC
Confidence 66788999999999999776 4566999999999994 332111 1222220 1334444444
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
++.+++++.++++|++.+++|.+++++...+....+++++.+
T Consensus 351 --~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 351 --PEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred --HHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 899999999999999998888765554443334444444443
|
This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=104.04 Aligned_cols=346 Identities=13% Similarity=0.106 Sum_probs=209.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-----hhhH
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----QETI 145 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-----~~~~ 145 (477)
..++.||.++++.+..--....+..+.+.+.+.-+||..+....+. .+. +...+...--+.++... ...-
T Consensus 256 ~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~-~da----l~~rI~a~~~~~~~~~~~dd~e~a~~ 330 (620)
T COG3914 256 NGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPH-TDA----LQERISAAVEKWYPIGRMDDAEIANA 330 (620)
T ss_pred cccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCC-chh----HHHHHHHhhhheeccCCcCHHHHHHH
Confidence 4567899999999877555577778888887777999888865332 221 22222222223333332 1233
Q ss_pred HHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeee----hhhHHHHHHHh
Q 011779 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS----HVTAEYWKNRT 221 (477)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~ 221 (477)
+.....||.+--+.........++..+. .|+..++-+..+... .+..+.++... .....++.+.+
T Consensus 331 I~~d~IdILvDl~g~T~d~r~~v~A~Rp----APiqvswlGy~aT~g-------~p~~DY~I~D~y~vPp~ae~yysEkl 399 (620)
T COG3914 331 IRTDGIDILVDLDGHTVDTRCQVFAHRP----APIQVSWLGYPATTG-------SPNMDYFISDPYTVPPTAEEYYSEKL 399 (620)
T ss_pred HHhcCCeEEEeccCceeccchhhhhcCC----CceEEeecccccccC-------CCcceEEeeCceecCchHHHHHHHHH
Confidence 3456788776433111111112222211 234333333322111 12333333322 44445554432
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
. .++ ..+-++| .+.+... ..-|..+|++++.+++++.++ ..|-...+.+...++.+
T Consensus 400 ~---RLp-----~cy~p~d--~~~~v~p--------~~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~---- 455 (620)
T COG3914 400 W---RLP-----QCYQPVD--GFEPVTP--------PPSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS---- 455 (620)
T ss_pred H---hcc-----cccCCCC--CcccCCC--------CcchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH----
Confidence 2 111 2222333 2222211 123677999999999988776 45777778887777776
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
..|+..|++.|.|++ ....+.+++++++.|+. ++++|.+.. ++..+.|.-||+++=+. .-+-..+.+||
T Consensus 456 ---~vP~Svl~L~~~~~~--~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~da 527 (620)
T COG3914 456 ---AVPNSVLLLKAGGDD--AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTASDA 527 (620)
T ss_pred ---hCCCcEEEEecCCCc--HHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccchHHH
Confidence 679999999998733 35688999999999984 789999974 66777899999988554 45557899999
Q ss_pred HHcCCCEEee--ccccccccCCCceEEeec-CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcC
Q 011779 379 MAFQLPVLLQ--KCLYQGTAAGGTTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQ 453 (477)
Q Consensus 379 ma~G~PvI~~--~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs 453 (477)
+-+|+|||+- ++. +++.|+. ++.. |..-++++ + .++..+.-..+-.|..++++.+..-++.... .|+
T Consensus 528 Lwm~vPVlT~~G~~F--asR~~~s--i~~~agi~e~vA~--s--~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d 599 (620)
T COG3914 528 LWMGVPVLTRVGEQF--ASRNGAS--IATNAGIPELVAD--S--RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFD 599 (620)
T ss_pred HHhcCceeeeccHHH--HHhhhHH--HHHhcCCchhhcC--C--HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccC
Confidence 9999999943 222 3344321 1111 22223333 2 5677777777777887777776665555444 699
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 011779 454 EHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (477)
.+.++++++.+|.++++..
T Consensus 600 ~~~far~le~~y~~M~~~y 618 (620)
T COG3914 600 PKAFARKLETLYWGMWSEY 618 (620)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988754
|
|
| >PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=111.30 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=125.9
Q ss_pred HHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-
Q 011779 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 338 (477)
Q Consensus 260 ~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~- 338 (477)
.|+.+|++++.++++...++ .|=-+..++++.++.+ +.|+.+|++...+. ..++.+++.+++.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~-------~vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILK-------AVPNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHH-------HSTTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 37889999999999888876 4778899999999988 77999998876543 2467888899999985
Q ss_pred CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecC
Q 011779 339 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~ 415 (477)
+++.|.+.. ++.-..|+.+|+++=+. .-+-+.+.+||+.+|+|||+-+...-+++.|. .++.. |-..++..
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~a--SiL~~lGl~ElIA~- 415 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGA--SILRALGLPELIAD- 415 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHH--HHHHHHT-GGGB-S-
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHH--HHHHHcCCchhcCC-
Confidence 789998864 44555678899999764 34457899999999999993322221222220 11111 22223333
Q ss_pred CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHH
Q 011779 416 GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~ 469 (477)
| .+++.+...+|..|++.+++++++-++...+ .|+...+++.+++.|++++
T Consensus 416 -s--~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 416 -S--EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp -S--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred -C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 3 8999999999999999999999998876643 5899999999999998864
|
|
| >PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-09 Score=99.34 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=181.6
Q ss_pred EEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec------------------
Q 011779 78 LLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------ 139 (477)
Q Consensus 78 l~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~------------------ 139 (477)
++++.+. .|..+...|+++|++++-++.++....+. +...|++.+.-
T Consensus 2 ~i~AGE~---SGD~~ga~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~ 66 (373)
T PF02684_consen 2 FISAGEA---SGDLHGARLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPK 66 (373)
T ss_pred EEEeeCc---cHHHHHHHHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHH
Confidence 4444443 23588999999999998888887755432 22233333110
Q ss_pred -----cchhhHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhh
Q 011779 140 -----KGQETINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 213 (477)
+.........+||+|++-. +.....++...+...+. .++++++--.-..|-..+....-+.+|..++...+-
T Consensus 67 ~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~--~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE 144 (373)
T PF02684_consen 67 LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP--IKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFE 144 (373)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC--ceEEEEECCceeeeCccHHHHHHHHHhheeECCccc
Confidence 0112333568999998865 44444445444443321 236666554333333334444556778888888888
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEee-ccc-CCCHHHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS-VSR-GKGQDLFLH 290 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGr-l~~-~Kg~~~ll~ 290 (477)
.+++.+. | -++..+.|+.-... .+.. .+...++.+ +++++.+| +.-|+ -.. .+....+++
T Consensus 145 ~~~y~~~-----g---~~~~~VGHPl~d~~-~~~~-------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 145 PEFYKKH-----G---VPVTYVGHPLLDEV-KPEP-------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HHHHhcc-----C---CCeEEECCcchhhh-ccCC-------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 8877742 3 34667776653221 1111 135556666 66666544 44453 322 455688888
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
++.++.+ ++|++++++..... ...+.+++.....+....+... ..+-.+.|+.||+.+..|
T Consensus 208 aa~~l~~-------~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S------ 268 (373)
T PF02684_consen 208 AAKLLKK-------QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS------ 268 (373)
T ss_pred HHHHHHH-------hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC------
Confidence 8888877 77999999887652 2334455665555433233222 357788999999999887
Q ss_pred ccHHHHHHHHcCCCEEeeccccc----------cccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQ----------GTAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~----------~~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
|.+.+|++.+|+|.|...-.+. -.+.=|.+.++.+.+ --++-+. .+++.+++++..++.|++.++
T Consensus 269 -GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~--~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 269 -GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQED--ATPENIAAELLELLENPEKRK 345 (373)
T ss_pred -CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhccc--CCHHHHHHHHHHHhcCHHHHH
Confidence 6999999999999985310000 001113333332211 0122222 238999999999999987755
Q ss_pred HHHHHH
Q 011779 439 TMGKRG 444 (477)
Q Consensus 439 ~~~~~a 444 (477)
......
T Consensus 346 ~~~~~~ 351 (373)
T PF02684_consen 346 KQKELF 351 (373)
T ss_pred HHHHHH
Confidence 443333
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process |
| >cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-09 Score=107.96 Aligned_cols=94 Identities=17% Similarity=0.040 Sum_probs=67.4
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCcee
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGL 411 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~ 411 (477)
.++++|.+.++. ....+|..||++|. .|...++.||+++|+|+| .....+ ..+.+.....|.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~------hgG~~t~~eal~~GvP~v-------~~P~~~dQ~~~a~~~~~~G~g~ 350 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVH------HGGAGTTAAALRAGVPQL-------VVPFFGDQPFWAARVAELGAGP 350 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeee------cCCchhHHHHHHcCCCEE-------eeCCCCCcHHHHHHHHHCCCCC
Confidence 456899999996 46788999999993 334589999999999999 444433 344455556777
Q ss_pred eecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 412 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 412 l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
..+..+.+.+++.+++.++++++ .+++..+.+
T Consensus 351 ~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~~ 382 (401)
T cd03784 351 ALDPRELTAERLAAALRRLLDPP-SRRRAAALL 382 (401)
T ss_pred CCCcccCCHHHHHHHHHHHhCHH-HHHHHHHHH
Confidence 77665434899999999998853 444443333
|
Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics. |
| >TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-09 Score=100.51 Aligned_cols=330 Identities=15% Similarity=0.127 Sum_probs=171.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecC-CCCChhhHHhhhhhhhhhcCcEE-----Eec--------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQV-----ISA-------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~-~~~~~~~~~~~~~~~~~~~g~~v-----~~~-------- 139 (477)
|||++++..-+-- ..+..+.++|.+. ++++.++... +-..... . ....+...|+.+ +.+
T Consensus 1 ~ki~~v~GtRpe~---iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (365)
T TIGR03568 1 KKICVVTGTRADY---GLLRPLLKALQDDPDLELQLIVTGMHLSPEYG--N-TVNEIEKDGFDIDEKIEILLDSDSNAGM 74 (365)
T ss_pred CeEEEEEecChhH---HHHHHHHHHHhcCCCCcEEEEEeCCCCChhhc--c-HHHHHHHcCCCCCCccccccCCCCCCCH
Confidence 5788888443211 3577888888874 7887776633 2211100 0 011111122211 001
Q ss_pred --------cchhhHHHhcCCcEEEEcCcchhhH--HHHHhhhCCCccccceeeeeeecccccch-hh-Hhhccccc-ccc
Q 011779 140 --------KGQETINTALKADLIVLNTAVAGKW--LDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LD-YVKHLPLV-AGA 206 (477)
Q Consensus 140 --------~~~~~~~~~~~~DiV~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~-~~~~~~~~-~~~ 206 (477)
.....+....+||+|+++....... ..++...++| + .++|.....+.. .. .+.....+ +..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IP-----v-~HveaG~rs~~~~eE~~r~~i~~la~l~ 148 (365)
T TIGR03568 75 AKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIP-----I-AHIHGGEVTEGAIDESIRHAITKLSHLH 148 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCc-----E-EEEECCccCCCCchHHHHHHHHHHHhhc
Confidence 1113555678999999997432221 2233444443 2 234443211111 11 11111122 233
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCC-CeEEEEEeecc--cCC
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGK 283 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~il~vGrl~--~~K 283 (477)
++.+....+.+. +.|.++.++.++.|..-......... .++.+.+++|++.+ +++++.+-+-. ...
T Consensus 149 f~~t~~~~~~L~-----~eg~~~~~i~~tG~~~iD~l~~~~~~------~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~ 217 (365)
T TIGR03568 149 FVATEEYRQRVI-----QMGEDPDRVFNVGSPGLDNILSLDLL------SKEELEEKLGIDLDKPYALVTFHPVTLEKES 217 (365)
T ss_pred cCCCHHHHHHHH-----HcCCCCCcEEEECCcHHHHHHhhhcc------CHHHHHHHhCCCCCCCEEEEEeCCCcccccC
Confidence 334434333333 34777788888876543222211111 13567788888644 55545444432 333
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecC-CCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEE
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-MNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g-~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~ 360 (477)
..+.+.+.++.+.+ ...++ +++... .+......+.+++...+ .++|.+.+.. .++..+++.||++
T Consensus 218 ~~~~l~~li~~L~~-------~~~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~v 285 (365)
T TIGR03568 218 AEEQIKELLKALDE-------LNKNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAV 285 (365)
T ss_pred chHHHHHHHHHHHH-------hccCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEE
Confidence 34444444444433 11234 333221 11111233444444221 3589999964 8899999999999
Q ss_pred EEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 361 VQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
|-.|. |. +.||.++|+||| + .++-+|.+..|.+.+++.. | .+++.+++.++ .++..++.+
T Consensus 286 itdSS------gg-i~EA~~lg~Pvv-------~--l~~R~e~~~~g~nvl~vg~-~--~~~I~~a~~~~-~~~~~~~~~ 345 (365)
T TIGR03568 286 IGNSS------SG-IIEAPSFGVPTI-------N--IGTRQKGRLRADSVIDVDP-D--KEEIVKAIEKL-LDPAFKKSL 345 (365)
T ss_pred EEcCh------hH-HHhhhhcCCCEE-------e--ecCCchhhhhcCeEEEeCC-C--HHHHHHHHHHH-hChHHHHHH
Confidence 96653 23 389999999999 3 3456777777778777743 4 89999999995 454433332
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 441 GKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 441 ~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
.....-|...+.++++.++
T Consensus 346 -----~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 346 -----KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred -----hhCCCCCCCChHHHHHHHh
Confidence 1122346666666666554
|
This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate. |
| >PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-10 Score=107.75 Aligned_cols=126 Identities=14% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
+.+.+++++|..... .++++++++ ++..++++|.+. .+ ...+||.+.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~-------~~--------~~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNA-------AD--------PRPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCc-------cc--------ccCCCEEEeecC
Confidence 456788888876544 556666654 778999997751 00 014799999987
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
.++.++|+.||++|...- -.++.||+++|+|+|+.+.+. ..+.....+.++....|...+..+.+++.+.++
T Consensus 241 ~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~P~l~ip~~~-~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~ 313 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKGG------YTTISEALALGKPALVIPRPG-QDEQEYNARKLEELGLGIVLSQEDLTPERLAEF 313 (318)
T ss_pred hHHHHHHHHhCCEEEECCC------HHHHHHHHHcCCCEEEEeCCC-CchHHHHHHHHHHCCCeEEcccccCCHHHHHHH
Confidence 899999999999995442 346999999999999433221 112222233444555677766655557888888
Q ss_pred HHHH
Q 011779 427 IVKL 430 (477)
Q Consensus 427 i~~l 430 (477)
|+++
T Consensus 314 l~~~ 317 (318)
T PF13528_consen 314 LERL 317 (318)
T ss_pred HhcC
Confidence 8753
|
|
| >COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-08 Score=92.33 Aligned_cols=328 Identities=17% Similarity=0.144 Sum_probs=180.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh--hhhhhhcCc-EEEe-c----cchh--
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL--EHKMWDRGV-QVIS-A----KGQE-- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~g~-~v~~-~----~~~~-- 143 (477)
+++|.+++.+.+ |..+-..|.++|+++=-+|.++....+.-.......+ ..++...|+ .+++ + +..+
T Consensus 1 ~~ki~i~AGE~S---GDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 1 MLKIALSAGEAS---GDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred CceEEEEecccc---hhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 468888886663 2467788999998763377777644332111000000 000111111 0000 0 0011
Q ss_pred -hHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 144 -TINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 144 -~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+.....+||++++-. +.....+...++...|. .++++++--....|...+.....+.+|.+.+.-.+-..++.+
T Consensus 78 ~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~--i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~k-- 153 (381)
T COG0763 78 VRYILANKPDVLILIDSPDFNLRVAKKLRKAGPK--IKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYDK-- 153 (381)
T ss_pred HHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCC--CCeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHHHHh--
Confidence 222358999998866 44444445445544443 345444443322233333445557888888888888887664
Q ss_pred HhhhccCCCCeEEEecCCchhh-hhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEee-ccc-CCCHHHHHHHHHHHHH
Q 011779 222 RERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS-VSR-GKGQDLFLHSFYESLE 297 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGr-l~~-~Kg~~~ll~a~~~l~~ 297 (477)
+|.+ ++.|.++.-.+. +.+ .++..|+++|++.+..++ +.-|+ -+. .+-...+.+++.++.+
T Consensus 154 ---~g~~---~~yVGHpl~d~i~~~~---------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 154 ---FGLP---CTYVGHPLADEIPLLP---------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred ---cCCC---eEEeCChhhhhccccc---------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3433 556655543222 211 257799999998777554 34453 222 3445566666666655
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh-cCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
++|+.++++--.. +..+.++....+ ......+++.+ .+-.+.|.+||+.+..| |.+.+
T Consensus 219 -------~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~tL 277 (381)
T COG0763 219 -------RYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTATL 277 (381)
T ss_pred -------hCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHHH
Confidence 7799999998776 333334333332 22212233333 45678999999999877 68999
Q ss_pred HHHHcCCCEEeeccccc----------cccCCCceEEeecCCc--eeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 377 EAMAFQLPVLLQKCLYQ----------GTAAGGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 377 EAma~G~PvI~~~~~~~----------~~~~gg~~e~v~~~~~--G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
|+|.+|+|.|.+.-..- -...-+.+.++.+... -++-. +..++.+++++..++.|...++++.+..
T Consensus 278 E~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~--~~~pe~la~~l~~ll~~~~~~~~~~~~~ 355 (381)
T COG0763 278 EAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQE--DCTPENLARALEELLLNGDRREALKEKF 355 (381)
T ss_pred HHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhh--hcCHHHHHHHHHHHhcChHhHHHHHHHH
Confidence 99999999995400000 0111233333322110 01111 1228999999999999986666665554
Q ss_pred HH
Q 011779 445 YE 446 (477)
Q Consensus 445 ~~ 446 (477)
.+
T Consensus 356 ~~ 357 (381)
T COG0763 356 RE 357 (381)
T ss_pred HH
Confidence 43
|
|
| >PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=95.77 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=159.5
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------ 142 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~------------ 142 (477)
|||++-....+ --.+...+++.|.++||+|.|.+...+. ....+...|+....+...
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 56766553321 1267889999999999999999977653 344445556655433211
Q ss_pred ------hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHH
Q 011779 143 ------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEY 216 (477)
Q Consensus 143 ------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (477)
..+.+..+||++++..+......+ ...++ |.+....+-+... ..+-.++.++.+++........
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~~va--~~lgi-----P~I~f~D~e~a~~---~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAARVA--FGLGI-----PSIVFNDTEHAIA---QNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHHHHH--HHhCC-----CeEEEecCchhhc---cceeehhcCCeeECCcccCHHH
Confidence 133345799999987654443223 33333 3333333321111 1223345666666665555444
Q ss_pred HHHHhHhhhccCCCCeEEE-ecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC-----CH-HHHH
Q 011779 217 WKNRTRERLRIKMPDTYVV-HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK-----GQ-DLFL 289 (477)
Q Consensus 217 ~~~~~~~~~~~~~~~i~vi-~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K-----g~-~~ll 289 (477)
+. .+|.+ -.+. +||++...+-....+ ..++.+++|+++++++++ |..+.+ |- +.+-
T Consensus 140 ~~-----~~G~~---~~i~~y~G~~E~ayl~~F~P------d~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~~i~~ 202 (335)
T PF04007_consen 140 LK-----RFGAK---NQIRTYNGYKELAYLHPFKP------DPEVLKELGLDDEPYIVV---RPEAWKASYDNGKKSILP 202 (335)
T ss_pred HH-----hcCCc---CCEEEECCeeeEEeecCCCC------ChhHHHHcCCCCCCEEEE---EeccccCeeecCccchHH
Confidence 33 44533 2344 788775332211111 256788899876665553 444422 22 2233
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.++++.+ ..+. ++++.... +. ....+++ ++.+....-+..+++..||++| .+
T Consensus 203 ~ii~~L~~--------~~~~-vV~ipr~~----~~----~~~~~~~----~~~i~~~~vd~~~Ll~~a~l~I------g~ 255 (335)
T PF04007_consen 203 EIIEELEK--------YGRN-VVIIPRYE----DQ----RELFEKY----GVIIPPEPVDGLDLLYYADLVI------GG 255 (335)
T ss_pred HHHHHHHh--------hCce-EEEecCCc----ch----hhHHhcc----CccccCCCCCHHHHHHhcCEEE------eC
Confidence 44444433 1333 55665441 11 1223333 2555555556778999999999 44
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
| |....||...|+|.| .+-.| +..+.+ -+.|+++...| ++++.+.+.+..
T Consensus 256 g-gTMa~EAA~LGtPaI-------s~~~g~~~~vd~~L--~~~Gll~~~~~--~~ei~~~v~~~~ 308 (335)
T PF04007_consen 256 G-GTMAREAALLGTPAI-------SCFPGKLLAVDKYL--IEKGLLYHSTD--PDEIVEYVRKNL 308 (335)
T ss_pred C-cHHHHHHHHhCCCEE-------EecCCcchhHHHHH--HHCCCeEecCC--HHHHHHHHHHhh
Confidence 3 588999999999999 65433 333333 24688999888 898888666544
|
They are found in archaea and some bacteria and have no known function. |
| >TIGR01426 MGT glycosyltransferase, MGT family | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=99.00 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=79.8
Q ss_pred CCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
++++|.+.+++.. ..+|..||++|..+- ..+++||+++|+|+|+.+. ..+...+.+.+.+...|..++..
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~---~~dq~~~a~~l~~~g~g~~l~~~ 342 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQ---GADQPMTARRIAELGLGRHLPPE 342 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCC---cccHHHHHHHHHHCCCEEEeccc
Confidence 4578999998754 588999999996543 3589999999999993111 11222223344455577777655
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+.+.++++++|.+++.|++.++++.+- ++.+...-..+..++.+++++
T Consensus 343 ~~~~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 343 EVTAEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 545799999999999998876666443 334445456777776666554
|
This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. |
| >COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-07 Score=85.05 Aligned_cols=335 Identities=19% Similarity=0.187 Sum_probs=190.0
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCC-cEEEEEe-cCCCCChhhHHhhhhhhhhhcCcE-------EE-----
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQ-------VI----- 137 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~-~~~~~~~~~~~~~~~~~~~~~g~~-------v~----- 137 (477)
|.+|||+++...-+- -.-+..+.+++.+.+ .+..|+. .++-.++- ....+...++. +.
T Consensus 1 m~~~Kv~~I~GTRPE---~iKmapli~~~~~~~~~~~~vi~TGQH~d~em-----~~~~le~~~i~~pdy~L~i~~~~~t 72 (383)
T COG0381 1 MKMLKVLTIFGTRPE---AIKMAPLVKALEKDPDFELIVIHTGQHRDYEM-----LDQVLELFGIRKPDYDLNIMKPGQT 72 (383)
T ss_pred CCceEEEEEEecCHH---HHHHhHHHHHHHhCCCCceEEEEecccccHHH-----HHHHHHHhCCCCCCcchhccccCCC
Confidence 568899998843211 045778899999887 7766555 33332111 11111222222 11
Q ss_pred -------eccchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccc-----cchhhHhhcc--c
Q 011779 138 -------SAKGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLDYVKHL--P 201 (477)
Q Consensus 138 -------~~~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~-----~~~~~~~~~~--~ 201 (477)
-+.....+....+||+|.+|.-....+. .+++..++| + .|--.+. +++....+.+ .
T Consensus 73 l~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip-----V---~HvEAGlRt~~~~~PEE~NR~l~~~ 144 (383)
T COG0381 73 LGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP-----V---GHVEAGLRTGDLYFPEEINRRLTSH 144 (383)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc-----e---EEEecccccCCCCCcHHHHHHHHHH
Confidence 0112246667899999999973332222 233333333 2 3332221 1232222222 1
Q ss_pred ccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHh-hCCCCCCeEEEEEeecc
Q 011779 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVS 280 (477)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~il~vGrl~ 280 (477)
-.+..++.+....+.+. +-|++.+++.++.|.+-....... .... ........ ++...++++++..=|-.
T Consensus 145 ~S~~hfapte~ar~nLl-----~EG~~~~~IfvtGnt~iDal~~~~-~~~~---~~~~~~~~~~~~~~~~~iLvT~HRre 215 (383)
T COG0381 145 LSDLHFAPTEIARKNLL-----REGVPEKRIFVTGNTVIDALLNTR-DRVL---EDSKILAKGLDDKDKKYILVTAHRRE 215 (383)
T ss_pred hhhhhcCChHHHHHHHH-----HcCCCccceEEeCChHHHHHHHHH-hhhc---cchhhHHhhhccccCcEEEEEcchhh
Confidence 22223344444444433 558899999999987533222111 1000 01111222 45444556666665544
Q ss_pred c-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH-HhcCCCCcEEEcccc--CCHHHHHHh
Q 011779 281 R-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAA 356 (477)
Q Consensus 281 ~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~v~~~g~~--~~l~~~~~~ 356 (477)
. .+++..+++++.++.+ +++++.++.--.. +..+++.. ..++-.++|++..+. .+...++..
T Consensus 216 N~~~~~~~i~~al~~i~~-------~~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~ 281 (383)
T COG0381 216 NVGEPLEEICEALREIAE-------EYPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKN 281 (383)
T ss_pred cccccHHHHHHHHHHHHH-------hCCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHh
Confidence 4 3888889999988877 5577776654432 13333333 445555678888765 677888888
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
|-+.+--| |...=||-..|+||+ +-+. ..-+|.+..| +-.++.. | .+.+.+++..++++++
T Consensus 282 a~~iltDS-------GgiqEEAp~lg~Pvl-------~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 282 AFLILTDS-------GGIQEEAPSLGKPVL-------VLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEE 343 (383)
T ss_pred ceEEEecC-------CchhhhHHhcCCcEE-------eeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChH
Confidence 87666444 456789999999999 5443 4457766443 3344444 3 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.+++|+... ..|.-.+..+++.+++..-
T Consensus 344 ~~~~m~~~~-----npYgdg~as~rIv~~l~~~ 371 (383)
T COG0381 344 FYERMSNAK-----NPYGDGNASERIVEILLNY 371 (383)
T ss_pred HHHHHhccc-----CCCcCcchHHHHHHHHHHH
Confidence 998886543 4466555666666666544
|
|
| >PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-10 Score=93.89 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=72.5
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------------hhHH--Hhc
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------------ETIN--TAL 149 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~---------------~~~~--~~~ 149 (477)
||+++++.+++++|.++||+|++++...+.... .....++.+..++.. ..+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDD--------EEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG---------SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCccc--------ccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 799999999999999999999999966554311 122345555432111 2233 557
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc---ch-----hhHhhcccccccceeeehhhHHHHHHHh
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK-----LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+||+||+|++.... +....+.. ...+++.++|+..... +. ......+..++.+++.|....+.+.+
T Consensus 73 ~~Dvv~~~~~~~~~-~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-- 146 (160)
T PF13579_consen 73 RPDVVHAHSPTAGL-VAALARRR---RGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR-- 146 (160)
T ss_dssp --SEEEEEHHHHHH-HHHHHHHH---HT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH--
T ss_pred CCeEEEecccchhH-HHHHHHHc---cCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH--
Confidence 99999999854332 22222211 2267889999853221 11 12234567888889888888877663
Q ss_pred HhhhccCCCCeEEEecC
Q 011779 222 RERLRIKMPDTYVVHLG 238 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ng 238 (477)
+|.+.+|+.|||||
T Consensus 147 ---~g~~~~ri~vipnG 160 (160)
T PF13579_consen 147 ---YGVPPDRIHVIPNG 160 (160)
T ss_dssp ---H---GGGEEE----
T ss_pred ---hCCCCCcEEEeCcC
Confidence 57888999999998
|
|
| >PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.2e-07 Score=90.28 Aligned_cols=318 Identities=10% Similarity=0.045 Sum_probs=179.8
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEe---------------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------- 138 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~--------------- 138 (477)
..+|.+++.+.+ |..+..+|+++|+++.-++.+.....+. +...|++.+.
T Consensus 226 ~~kIfI~AGE~S---GDlhgA~Li~aLk~~~P~i~~~GvGG~~------------M~aaG~e~l~d~~eLsVmG~~EVL~ 290 (608)
T PRK01021 226 NTSCFISAGEHS---GDTLGGNLLKEIKALYPDIHCFGVGGPQ------------MRAEGFHPLFNMEEFQVSGFWEVLL 290 (608)
T ss_pred CCeEEEEecccc---HHHHHHHHHHHHHhcCCCcEEEEEccHH------------HHhCcCcccCChHHhhhhhHHHHHH
Confidence 347888886652 3578889999999987777777644332 2222333211
Q ss_pred -c-------cchhhHHHhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 139 -A-------KGQETINTALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 139 -~-------~~~~~~~~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
+ +...+.....+||++++-+ |.....++...+... +..|+++++--....|-..+....-+.+|..++.
T Consensus 291 ~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~G--i~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~I 368 (608)
T PRK01021 291 ALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRG--YKGKIVHYVCPSIWAWRPKRKTILEKYLDLLLLI 368 (608)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcC--CCCCEEEEECccceeeCcchHHHHHHHhhhheec
Confidence 0 0112333457999999865 444444444443321 1125665555433333334445555778889998
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEee-ccc-CCCHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINS-VSR-GKGQD 286 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGr-l~~-~Kg~~ 286 (477)
..+-.+++++ .| -++..+.|+.-.. ..... .+++.|+++|++++.. +-+.-|+ -.. .+..+
T Consensus 369 fPFE~~~y~~-----~g---v~v~yVGHPL~d~-i~~~~-------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 369 LPFEQNLFKD-----SP---LRTVYLGHPLVET-ISSFS-------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred CccCHHHHHh-----cC---CCeEEECCcHHhh-cccCC-------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 8888888764 23 3356666664222 11111 1456788999975654 4445553 222 45667
Q ss_pred HHHHHHH--HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 287 LFLHSFY--ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 287 ~ll~a~~--~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+++|++ .+. ++.++++..... .+.+.+++..++.++ -.+.+... ++-.++|++||+.+..|
T Consensus 433 v~l~aa~~~~l~----------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~-~~~~~~m~aaD~aLaaS 496 (608)
T PRK01021 433 IQVQAFLASSLA----------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPS-QFRYELMRECDCALAKC 496 (608)
T ss_pred HHHHHHHHHHhc----------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecC-cchHHHHHhcCeeeecC
Confidence 7888876 332 357787754431 235666666654331 02233321 12478999999999887
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeecccccc------------ccCCCceEEeecCC--ceeeecCCCCCHHHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQG------------TAAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~------------~~~gg~~e~v~~~~--~G~l~~~~d~~~~~la~~i~~l 430 (477)
|.+.+|++.+|+|.|...-..-. .+.=+.+.++.+.+ --++-...|.+++.+++++ ++
T Consensus 497 -------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~l 568 (608)
T PRK01021 497 -------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DI 568 (608)
T ss_pred -------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HH
Confidence 69999999999999953100000 01112222222111 1122101233489999996 88
Q ss_pred HhCHHHHHHHHHHHHHHH
Q 011779 431 ATHVERRLTMGKRGYERV 448 (477)
Q Consensus 431 l~~~~~~~~~~~~a~~~~ 448 (477)
+.|++.++++.+...+.-
T Consensus 569 L~d~~~r~~~~~~l~~lr 586 (608)
T PRK01021 569 LKTSQSKEKQKDACRDLY 586 (608)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 889888887776665533
|
|
| >COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-07 Score=78.79 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=159.6
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
|+|+|++....- |+|. .+...||++|.++|..+..++.+.... .+.. ...++.+.-.+... .++..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~------~~~~--~~~~f~~~~~~~~n-~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA------IIHK--VYEGFKVLEGRGNN-LIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh------hhhh--hhhhccceeeeccc-ccccccCC
Confidence 789999976544 5555 778999999999999998888554221 1111 12233332222222 56778999
Q ss_pred EEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCe
Q 011779 153 LIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (477)
Q Consensus 153 iV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i 232 (477)
++++.+.....-....++... ..+++. +.+.....+. ..+.++ +...+ -.+.++.-+.+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~e~---~~k~l~-fDd~~~~~~~--------d~d~iv-------N~~~~-a~~~y~~v~~k~ 131 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKEEA---GSKILI-FDDENAKSFK--------DNDLIV-------NAILN-ANDYYGLVPNKT 131 (318)
T ss_pred EEEEeccCCCHHHHHHHHHHh---CCcEEE-ecCCCccchh--------hhHhhh-------hhhhc-chhhccccCcce
Confidence 999987444332222233111 123322 2222111111 111111 11111 111334444433
Q ss_pred EEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE
Q 011779 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312 (477)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ 312 (477)
-++-|.+.-..++... ..+++.+++ +-+-+++..|. ...||+ .+++++.+.+ .++.+.
T Consensus 132 -~~~lGp~y~~lr~eF~-----~~r~~~~~r----~~r~ilI~lGG-sDpk~l--t~kvl~~L~~---------~~~nl~ 189 (318)
T COG3980 132 -RYYLGPGYAPLRPEFY-----ALREENTER----PKRDILITLGG-SDPKNL--TLKVLAELEQ---------KNVNLH 189 (318)
T ss_pred -EEEecCCceeccHHHH-----HhHHHHhhc----chheEEEEccC-CChhhh--HHHHHHHhhc---------cCeeEE
Confidence 3444655544333221 113333333 22324445554 345654 5677776644 334443
Q ss_pred -EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccc
Q 011779 313 -IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCL 391 (477)
Q Consensus 313 -ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~ 391 (477)
++|++. |....+++.++++ +++.+.-..++++++|..||+.+... |.++.||...|+|.++- +.
T Consensus 190 iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~l~l-~~ 254 (318)
T COG3980 190 IVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPSLVL-PL 254 (318)
T ss_pred EEecCCC----cchhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCceEE-ee
Confidence 456553 4566677777766 68889888899999999999988543 68999999999994310 00
Q ss_pred cccccCCCceEEeecCCceeeecCC--CCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 392 YQGTAAGGTTEIVVNGTTGLLHPVG--KEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 392 ~~~~~~gg~~e~v~~~~~G~l~~~~--d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
+.+.-....... ..|.....+ . ..+.....+.++..|+..|+.+....
T Consensus 255 --a~NQ~~~a~~f~--~lg~~~~l~~~l-~~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 255 --AENQIATAKEFE--ALGIIKQLGYHL-KDLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred --eccHHHHHHHHH--hcCchhhccCCC-chHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 222222222221 122222221 1 14677788888888888777665433
|
|
| >TIGR00661 MJ1255 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-07 Score=86.29 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=57.0
Q ss_pred CCcEEEcccc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE------EeecCCce
Q 011779 338 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE------IVVNGTTG 410 (477)
Q Consensus 338 ~~~v~~~g~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e------~v~~~~~G 410 (477)
++++.+.++. +++.++|+.||++|..+- ..++.||+++|+|+| .....+..| .+.+.+.|
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l-------~ip~~~~~eQ~~na~~l~~~g~~ 294 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLI-------VIPDLGQFEQGNNAVKLEDLGCG 294 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEE-------EEcCCCcccHHHHHHHHHHCCCE
Confidence 4689999987 589999999999996553 357999999999999 555444323 35555678
Q ss_pred eeecCCCCCHHHHHHHHHHHHhC
Q 011779 411 LLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 411 ~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
...+..+ . ++.+++...+.+
T Consensus 295 ~~l~~~~--~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 295 IALEYKE--L-RLLEAILDIRNM 314 (321)
T ss_pred EEcChhh--H-HHHHHHHhcccc
Confidence 7777665 4 455555554444
|
This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases. |
| >PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=79.05 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=95.4
Q ss_pred ccEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchh-------
Q 011779 74 SKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE------- 143 (477)
Q Consensus 74 ~~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~------- 143 (477)
|++|+++..---| ||-|+++.+|+..|.++||+|+|.|........ .....|++++.++..+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeCCCCCCchHHH
Confidence 5789999876433 999999999999999999999999965443211 2223466664432211
Q ss_pred ---------hH--HH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc--chh--------hHhhcc
Q 011779 144 ---------TI--NT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FKL--------DYVKHL 200 (477)
Q Consensus 144 ---------~~--~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--~~~--------~~~~~~ 200 (477)
.+ .+ ..+.|+|+++....+.++....+. ++..+.+++...|+..... |.. ..+...
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~-~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~av 151 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK-LRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAV 151 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh-hhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 11 125789999876533332222221 2222346777777754222 111 122233
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCc
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd 240 (477)
+..+.++++|..+.+++.++ |+ ..++.+|++|.|
T Consensus 152 k~ad~lIaDs~~I~~y~~~~----y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYIKER----YG--RKKSTFIAYGAD 185 (185)
T ss_pred HhCCEEEEcCHHHHHHHHHH----cC--CCCcEEecCCCC
Confidence 68888999999999998874 44 467899999976
|
|
| >COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-06 Score=82.08 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=101.1
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~ 348 (477)
.+++.+..|..... ..+++.+-+... .-+.++++...+. +. ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~--------~l~~~vi~~~~~~------~~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALA--------DLDVRVIVSLGGA------RD------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHh--------cCCcEEEEecccc------cc------ccccCCCceEEecCCC
Confidence 34555556665543 334444333322 1467777766431 00 1225678898888863
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHH
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 428 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~ 428 (477)
...++..||++|...- -.++.||+.+|+|+|+.+. ..|.....+.+++-..|...+......+.++++|.
T Consensus 294 -~~~~l~~ad~vI~hGG------~gtt~eaL~~gvP~vv~P~---~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~ 363 (406)
T COG1819 294 -QLELLPRADAVIHHGG------AGTTSEALYAGVPLVVIPD---GADQPLNAERVEELGAGIALPFEELTEERLRAAVN 363 (406)
T ss_pred -HHHHhhhcCEEEecCC------cchHHHHHHcCCCEEEecC---CcchhHHHHHHHHcCCceecCcccCCHHHHHHHHH
Confidence 3459999999996543 4689999999999993221 12333345566666788888854444999999999
Q ss_pred HHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 429 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 429 ~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++.|+..++...+.. +.+.+.-..+.+++.++++.
T Consensus 364 ~vL~~~~~~~~~~~~~-~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 364 EVLADDSYRRAAERLA-EEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred HHhcCHHHHHHHHHHH-HHhhhcccHHHHHHHHHHHH
Confidence 9999988766654433 33434445444555444443
|
|
| >PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-06 Score=80.04 Aligned_cols=335 Identities=15% Similarity=0.188 Sum_probs=159.1
Q ss_pred CccEEEEEeccC-CCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 73 KSKLVLLVSHEL-SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
++++|+|.+... ..++-.+.+.+... -...++++.+++..... .....+..++.....+.+....+.
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l~~~l~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~~~~A 79 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKALFEYLI-KNYPDYKIYWIINKKSP-----------ELKPKGIKVVKFGSLKHIYYLARA 79 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHHHHHHH-HH-TTSEEEEEESSGGG---------------SS-EEEETTSHHHHHHHHHE
T ss_pred cCCEEEEEECCCCCCCCCHHHHHHHHH-hhCCCcEEEEEEcCchH-----------hhccCCceEEeecHHHHHHHHHhC
Confidence 456677777532 22444454444333 12455788888754321 334557788888888877777888
Q ss_pred cEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh----------hHhhcccccccceeeehhhHHHHHHHh
Q 011779 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----------DYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
+++++++........ .. ....+++..+|+..--.... .........+.+++.|....+.+.+
T Consensus 80 k~~i~~~~~~~~~~~--~~----~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~-- 151 (369)
T PF04464_consen 80 KYIISDSYFPDLIYF--KK----RKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK-- 151 (369)
T ss_dssp EEEEESS---T--TS---------TTSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH--
T ss_pred cEEEECCCCCccccc--cc----CCCcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH--
Confidence 999988533221100 00 12256788888862111111 2333456777788887777766554
Q ss_pred HhhhccCCCCeEEEecCCchh--hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH------HHHHHHHH
Q 011779 222 RERLRIKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ------DLFLHSFY 293 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~------~~ll~a~~ 293 (477)
.++.+..++.+ .|..-. .+..... .++.+++.++++.++.+|+++-........ ...++ +.
T Consensus 152 --~f~~~~~~i~~--~G~PR~D~l~~~~~~------~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~ 220 (369)
T PF04464_consen 152 --AFGYPEDKILV--TGYPRNDYLFNKSKE------NRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FE 220 (369)
T ss_dssp --HTT--GGGEEE--S--GGGHHHHHSTT-------HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HH
T ss_pred --HhccCcceEEE--eCCCeEhHHhccCHH------HHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HH
Confidence 56666665554 554322 2222211 156788899999999999998654332221 12222 22
Q ss_pred HHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccH
Q 011779 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGR 373 (477)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~ 373 (477)
++. .+ ..+++.+++-.- |......... ....++|.+.....++.+++..||++|-= ++-
T Consensus 221 ~l~-~~-----~~~~~~li~k~H------p~~~~~~~~~--~~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySS 279 (369)
T PF04464_consen 221 KLN-FL-----LKNNYVLIIKPH------PNMKKKFKDF--KEDNSNIIFVSDNEDIYDLLAAADILITD-------YSS 279 (369)
T ss_dssp HHH-HH-----HTTTEEEEE--S------HHHHTT------TT-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-T
T ss_pred HHH-HH-----hCCCcEEEEEeC------chhhhchhhh--hccCCcEEECCCCCCHHHHHHhcCEEEEe-------chh
Confidence 221 11 226788887665 2222111111 33346888888778999999999999932 346
Q ss_pred HHHHHHHcCCCEEeeccccc--cccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Q 011779 374 ITIEAMAFQLPVLLQKCLYQ--GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 451 (477)
Q Consensus 374 ~~lEAma~G~PvI~~~~~~~--~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 451 (477)
++.|++.+++|||....-.. ....|...+ ..+...|-.+. + .++|.++|...+.++...++..+..++..-.
T Consensus 280 i~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~--~--~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~- 353 (369)
T PF04464_consen 280 IIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY--N--FEELIEAIENIIENPDEYKEKREKFRDKFFK- 353 (369)
T ss_dssp HHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES--S--HHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-
T ss_pred HHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC--C--HHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-
Confidence 89999999999993210000 001122223 11223344443 3 8999999999887665443333333332211
Q ss_pred cCHHHHHHHHHHHH
Q 011779 452 FQEHHMAERIAVVL 465 (477)
Q Consensus 452 fs~~~~~~~~~~~~ 465 (477)
|.-.+.++++.+.+
T Consensus 354 ~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 354 YNDGNSSERIVNYI 367 (369)
T ss_dssp T--S-HHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 33345555555443
|
They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D. |
| >COG4641 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=79.02 Aligned_cols=326 Identities=13% Similarity=0.044 Sum_probs=182.9
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Eeccc----hhhHHHhcCCcEEEEcCcc-
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG----QETINTALKADLIVLNTAV- 160 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~~----~~~~~~~~~~DiV~~~~~~- 160 (477)
+|...+..-+.++|...||+|..+-+....... ........+... +.-.. .....+.+++|+|++-...
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 555577888999999999999999865432110 000111122222 11111 1345567899999886522
Q ss_pred -----hhhHHHHHhhhCCCccccceeeeeeeccccc-----c-hhhH-hhcccccccceeeehhhHHHHHHHhHhhhccC
Q 011779 161 -----AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----F-KLDY-VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (477)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----~-~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (477)
....+..+.+. ...+++++.-+..... . .... ++.+-..+.++..+... ....+.+. .-
T Consensus 89 ~~~~~~~~~~~a~l~~----~~l~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l---~~~~yyq~--~~ 159 (373)
T COG4641 89 QPDEESTIDLWAWLKR----KCLPVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGL---VANKYYQE--GG 159 (373)
T ss_pred cccceehHHHHHHhhc----CCcceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchH---HHHHHHHh--hc
Confidence 11111222221 1134334333321111 1 1111 11111222222222222 11211111 12
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
..+...++.++|.+.|.+.+... .-.--+.++|+-.+. .++.+-+.+.+-... ..-+
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~k------l~v~ 216 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFK------LMVD 216 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchh------hhcc
Confidence 35688999999999888765321 122357778876654 222222222221110 0012
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCC-Cc---ccHHHHHHHHc
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWG-EC---FGRITIEAMAF 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~-E~---~g~~~lEAma~ 381 (477)
-++.+.|... -..+... .-.+++...|+. ..+..+++..|+.+.-++... ++ +.+-+.|+|+|
T Consensus 217 rr~~~~g~~y------~~~~~~~----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 217 RRFYVLGPRY------PDDIWGR----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred ceeeecCCcc------chhhhcc----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 4556666541 1111111 012345555542 667888888888775544211 22 25779999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|.|.+ +....++...+.+|+.=++.. | ..++.+++..++..++.++++++.+.+.+...|+-+.-+..+
T Consensus 287 ~~~li-------T~~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~ 355 (373)
T COG4641 287 GGFLI-------TDYWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKL 355 (373)
T ss_pred CCccc-------cccHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHH
Confidence 99999 888888888888876544443 5 799999999999999999999999999999999999888888
Q ss_pred HHHHHHHHh
Q 011779 462 AVVLKEVLK 470 (477)
Q Consensus 462 ~~~~~~~~~ 470 (477)
.+....+..
T Consensus 356 ~~~i~sI~~ 364 (373)
T COG4641 356 LNEIASINI 364 (373)
T ss_pred HHHHHHHHH
Confidence 877776543
|
|
| >PRK14089 ipid-A-disaccharide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-06 Score=79.04 Aligned_cols=249 Identities=16% Similarity=0.088 Sum_probs=130.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCc-EEEe-ccch-----hhHH
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVIS-AKGQ-----ETIN 146 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~-~~~~-----~~~~ 146 (477)
+|+|++++.+.+ |..+...|+++|++ ++.++....+.- ....+.+. .+.-.|+ .+++ ++.. +...
T Consensus 1 ~~~i~i~aGE~S---GD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~ 72 (347)
T PRK14089 1 MMKILVSALEPS---ANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVE 72 (347)
T ss_pred CcEEEEEecccc---HHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468988886652 35788899999987 555554333221 10000000 0000110 0000 0000 0111
Q ss_pred HhcCCcEEEEcC-cchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhh
Q 011779 147 TALKADLIVLNT-AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (477)
Q Consensus 147 ~~~~~DiV~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (477)
...+||++++-. +.....++...+...|. .|+++++--.-..|-..+.....+.+|.+.+...+-.+++
T Consensus 73 ~~~~pd~~i~iD~p~Fnl~lak~~k~~~~~--i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~~y-------- 142 (347)
T PRK14089 73 LAKQADKVLLMDSSSFNIPLAKKIKKAYPK--KEIIYYILPQVWAWKKGRAKILEKYCDFLASILPFEVQFY-------- 142 (347)
T ss_pred HhcCCCEEEEeCCCCCCHHHHHHHHhcCCC--CCEEEEECccceeeCcchHHHHHHHHhhhhccCCCCHHHh--------
Confidence 236999998865 44455555555544322 4566655543333333344445566666666554434332
Q ss_pred ccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--CCCHHHHHHHHHHHHHHHHhhc
Q 011779 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKK 303 (477)
Q Consensus 226 ~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~ 303 (477)
| .++.++.|++-.. .... +.. +++++.+.++-|+-.. .+....+++++.++.+
T Consensus 143 g---~~~~~VGhPl~d~-~~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~------ 197 (347)
T PRK14089 143 Q---SKATYVGHPLLDE-IKEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG------ 197 (347)
T ss_pred C---CCCEEECCcHHHh-hhhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh------
Confidence 2 3456777765322 1110 011 2234455555554221 3444556677776654
Q ss_pred cCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC
Q 011779 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (477)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~ 383 (477)
+ ..++++.|.. . .+.+++...+. ..+.+.+ +..++|+.||+.+..| |.+.+|++.+|+
T Consensus 198 -~--~~~~~i~~a~-----~-~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~ 255 (347)
T PRK14089 198 -K--EKILVVPSFF-----K-GKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGT 255 (347)
T ss_pred -c--CcEEEEeCCC-----c-HHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCC
Confidence 2 2677887765 2 25555555432 2344443 6678999999999777 578889999999
Q ss_pred CEEe
Q 011779 384 PVLL 387 (477)
Q Consensus 384 PvI~ 387 (477)
|.|.
T Consensus 256 P~Vv 259 (347)
T PRK14089 256 PFVL 259 (347)
T ss_pred CEEE
Confidence 9994
|
|
| >PRK02797 4-alpha-L-fucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-05 Score=71.85 Aligned_cols=173 Identities=10% Similarity=0.052 Sum_probs=115.5
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
.++++|+.-.+-++.-++..+++++.+... .++++++-=+-+..+..|.+++++..+++--++++..+-..
T Consensus 144 ~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~---------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 144 AGKMTILVGNSGDRSNRHIEALRALHQQFG---------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHhC---------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 345666654456667788778887776633 67888775433333457999999999988765788777642
Q ss_pred ---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHH
Q 011779 348 ---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 348 ---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la 424 (477)
+|..++++.||+.++.-. +.+|+|+.++ .+.+|+||++ ..+++-..++.+.+ .-++++.++-|...+.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl~l-Li~~G~~v~l------~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTLCL-LIQLGKPVVL------SRDNPFWQDLTEQG-LPVLFTGDDLDEDIVR 285 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHHHH-HHHCCCcEEE------ecCCchHHHHHhCC-CeEEecCCcccHHHHH
Confidence 888999999999888765 4899997665 8999999994 33444445554333 2233444331122221
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+.++++....++.+. |+.++..+.|.++++....
T Consensus 286 ----------e~~rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 286 ----------EAQRQLASVDKNIIA--FFSPNYLQGWRNALAIAAG 319 (322)
T ss_pred ----------HHHHHHHhhCcceee--ecCHhHHHHHHHHHHHhhC
Confidence 223344455555553 9999999999999987654
|
|
| >PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.3e-06 Score=81.74 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=136.0
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHHH--HhhhCCCccccceeeeeeec----ccc--cchhhHhhcc-cccccceeeehhh
Q 011779 143 ETINTALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEM----RGH--YFKLDYVKHL-PLVAGAMIDSHVT 213 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~h~~----~~~--~~~~~~~~~~-~~~~~~~~~s~~~ 213 (477)
..+....+||+|+++.-.......+ +...++ | +.++|.- ... ......+... +.++..++.+...
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~i-----p-v~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~ 133 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRNEALAAALAAFYLNI-----P-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEA 133 (346)
T ss_dssp HHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT------E-EEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHH
T ss_pred HHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCC-----C-EEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHH
Confidence 3555678999999997443332222 223233 3 2334432 111 1111122222 2333445555555
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHH-HHhh-CCCCCCeEEEEEeeccc---CCCHHHH
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSR---GKGQDLF 288 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~-r~~~-~~~~~~~~il~vGrl~~---~Kg~~~l 288 (477)
.+.+. +.|.++.++.++-|..-.......+.. .+.+ ...+ ...+++++++..=+... ......+
T Consensus 134 ~~~L~-----~~G~~~~rI~~vG~~~~D~l~~~~~~~------~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i 202 (346)
T PF02350_consen 134 RERLL-----QEGEPPERIFVVGNPGIDALLQNKEEI------EEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQI 202 (346)
T ss_dssp HHHHH-----HTT--GGGEEE---HHHHHHHHHHHTT------CC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHH
T ss_pred HHHHH-----hcCCCCCeEEEEChHHHHHHHHhHHHH------hhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHH
Confidence 55544 458888999999775432222111110 0011 1111 11455666655544333 2345566
Q ss_pred HHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~ 366 (477)
.++++.+.+ . +++.+++.....+ .....+.+...++ +++++.... .++..+++.|+++|--|
T Consensus 203 ~~~l~~L~~-------~-~~~~vi~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS-- 266 (346)
T PF02350_consen 203 LEALKALAE-------R-QNVPVIFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS-- 266 (346)
T ss_dssp HHHHHHHHH-------H-TTEEEEEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS--
T ss_pred HHHHHHHHh-------c-CCCcEEEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC--
Confidence 677776655 2 5788888776422 4566666666655 388888764 78889999999999655
Q ss_pred CCCcccHHHH-HHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 367 WGECFGRITI-EAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 367 ~~E~~g~~~l-EAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
| .+. ||.++|+||| .- +.|.-.+.+..+.+-+ +. .| .+++.+++.+++.+++.+..+..
T Consensus 267 -----s-GI~eEa~~lg~P~v-------~iR~~geRqe~r~~~~nvl-v~-~~--~~~I~~ai~~~l~~~~~~~~~~~-- 327 (346)
T PF02350_consen 267 -----S-GIQEEAPSLGKPVV-------NIRDSGERQEGRERGSNVL-VG-TD--PEAIIQAIEKALSDKDFYRKLKN-- 327 (346)
T ss_dssp -----H-HHHHHGGGGT--EE-------ECSSS-S-HHHHHTTSEEE-ET-SS--HHHHHHHHHHHHH-HHHHHHHHC--
T ss_pred -----c-cHHHHHHHhCCeEE-------EecCCCCCHHHHhhcceEE-eC-CC--HHHHHHHHHHHHhChHHHHhhcc--
Confidence 3 466 9999999999 55 3344456555554444 55 45 89999999999988554444321
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 011779 445 YERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 445 ~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
...-|.-...++++.++++
T Consensus 328 ---~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 328 ---RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp ---S--TT-SS-HHHHHHHHHH
T ss_pred ---CCCCCCCCcHHHHHHHhhC
Confidence 2245666667777766653
|
1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C. |
| >COG1817 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-05 Score=68.40 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-------------------hhHHHhcCC
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------------------ETINTALKA 151 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------------------~~~~~~~~~ 151 (477)
.++.++...|.++||+|.+-|...+. +.+.++..|++..+.... .++....+|
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kp 85 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKP 85 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67889999999999999999977664 345555666655332111 244466899
Q ss_pred cEEEE-cCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 152 DLIVL-NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 152 DiV~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
|+.+. |++.+.. .++..++ +.+....+-+ . ....+..++.++.++.........+. .+|.++.
T Consensus 86 dv~i~~~s~~l~r---vafgLg~-----psIi~~D~eh--A-~~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p~ 149 (346)
T COG1817 86 DVAIGKHSPELPR---VAFGLGI-----PSIIFVDNEH--A-EAQNKLTLPLADVIITPEAIDEEELL-----DFGADPN 149 (346)
T ss_pred ceEeecCCcchhh---HHhhcCC-----ceEEecCChh--H-HHHhhcchhhhhheecccccchHHHH-----HhCCCcc
Confidence 99987 3333322 2223233 2222222221 1 11233444666666665555444433 4454544
Q ss_pred CeEEEecCCch----hhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc--------CCCHHHHHHHHHHHHHH
Q 011779 231 DTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--------GKGQDLFLHSFYESLEL 298 (477)
Q Consensus 231 ~i~vi~ngvd~----~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~--------~Kg~~~ll~a~~~l~~~ 298 (477)
+ .+-+||+.. ..|.|+ .++-+++|+.++...|++ |..+ .++++.+.++++++.+
T Consensus 150 ~-i~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVm--Rpe~~~A~y~~g~~~~~~~~~li~~l~k- 215 (346)
T COG1817 150 K-ISGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVM--RPEPWGAHYDNGDRGISVLPDLIKELKK- 215 (346)
T ss_pred c-eecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEE--eeccccceeeccccchhhHHHHHHHHHh-
Confidence 3 333455432 223333 456788999886544433 3332 5666667777776643
Q ss_pred HHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
.-.+++-.. ...++..+.+ ++++..-..-|--+++--|++++ .+| |...-||
T Consensus 216 ----------~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi------g~g-gTMarEa 267 (346)
T COG1817 216 ----------YGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI------GAG-GTMAREA 267 (346)
T ss_pred ----------CcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee------cCC-chHHHHH
Confidence 224555443 2233344433 23333333345445677788887 332 6778999
Q ss_pred HHcCCCEEeeccccccccCC---CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 379 MAFQLPVLLQKCLYQGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~~~~g---g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
...|+|.| ++.-| +..+.. -+.|.++...| +.+..+...+++.++.
T Consensus 268 AlLGtpaI-------s~~pGkll~vdk~l--ie~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 268 ALLGTPAI-------SCYPGKLLAVDKYL--IEKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred HHhCCceE-------EecCCccccccHHH--HhcCceeecCC--HHHHHHHHHHHhhchh
Confidence 99999999 65533 233333 35789999888 6777777777776654
|
|
| >PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long) | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00031 Score=64.78 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=103.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g- 345 (477)
.+++.|+.-.+-++.-++-.+++++.+. ...++++++- |-|. .+..|.+++.+.++++--.+++..+-
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~---------~~~~~kIivPLsYg~-~n~~Yi~~V~~~~~~lF~~~~~~iL~e 252 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQ---------FGDDVKIIVPLSYGA-NNQAYIQQVIQAGKELFGAENFQILTE 252 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHh---------cCCCeEEEEECCCCC-chHHHHHHHHHHHHHhcCccceeEhhh
Confidence 4556676444556677787676666653 2256777663 3332 23368999999998875555776654
Q ss_pred c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHH
Q 011779 346 K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPL 423 (477)
Q Consensus 346 ~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~l 423 (477)
+ .+|..++++.||+.+++.. +.+|.|+.++ .+.+|+||+ .+...-.-..+.+...-+++..++-+...+
T Consensus 253 ~mpf~eYl~lL~~cDl~if~~~-RQQgiGnI~l-Ll~~G~~v~-------L~~~np~~~~l~~~~ipVlf~~d~L~~~~v 323 (360)
T PF07429_consen 253 FMPFDEYLALLSRCDLGIFNHN-RQQGIGNICL-LLQLGKKVF-------LSRDNPFWQDLKEQGIPVLFYGDELDEALV 323 (360)
T ss_pred hCCHHHHHHHHHhCCEEEEeec-hhhhHhHHHH-HHHcCCeEE-------EecCChHHHHHHhCCCeEEeccccCCHHHH
Confidence 3 2889999999999999987 5889997665 899999999 554444333332222223444333234444
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
.++=+++.. .-++.+ -|...+..+.|.+.+..+
T Consensus 324 ~ea~rql~~----------~dk~~i--aFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 324 REAQRQLAN----------VDKQQI--AFFAPNYLQGWRQALRLA 356 (360)
T ss_pred HHHHHHHhh----------Ccccce--eeeCCchHHHHHHHHHHH
Confidence 444443433 111222 266666777776666543
|
This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=77.46 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=156.9
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCch--hhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEee
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK--ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 278 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGr 278 (477)
.++|.+++++...--...+...+++- ..+....|...-.. +...|.. ...|..++++++.+++.....
T Consensus 698 ~~mDYiITDs~tsPl~~a~~ysEkLv-~lPh~ffi~d~~qk~~~~~dpn~---------kP~r~~y~Lp~d~vvf~~FNq 767 (966)
T KOG4626|consen 698 TFMDYIITDSVTSPLELAQQYSEKLV-YLPHCFFIGDHKQKNQDVLDPNN---------KPTRSQYGLPEDAVVFCNFNQ 767 (966)
T ss_pred ceeeEEeecccCChHHHHHHHHHHHh-hCCceEEecCcccccccccCCCC---------CCCCCCCCCCCCeEEEeechh
Confidence 56788888777665554444433332 22335555433221 1111111 235778999999988887777
Q ss_pred cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHH
Q 011779 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLA 355 (477)
Q Consensus 279 l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~ 355 (477)
+. |=-...++.+.++.+ +.|+..|++.--.. --++.++..++++|++ ++|+|..-. +|=-.-+.
T Consensus 768 Ly--KidP~~l~~W~~ILk-------~VPnS~LwllrfPa----~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 768 LY--KIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred hh--cCCHHHHHHHHHHHH-------hCCcceeEEEeccc----cchHHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 64 555678888888877 77998888765431 1257889999999985 788888742 55566688
Q ss_pred hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHH
Q 011779 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 356 ~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
.+||++-+-. .-| -.+-+|.+.+|+|+|+.+.-..++++++. .+..-..|-++..+ .++..+.-.+|-.|.+
T Consensus 835 LaDv~LDTpl--cnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~S--ll~~~Gl~hliak~---~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 835 LADVCLDTPL--CNG-HTTGMDVLWAGVPMVTMPGETLASRVAAS--LLTALGLGHLIAKN---REEYVQIAVRLATDKE 906 (966)
T ss_pred hhhhcccCcC--cCC-cccchhhhccCCceeecccHHHHHHHHHH--HHHHcccHHHHhhh---HHHHHHHHHHhhcCHH
Confidence 8999985544 222 24568899999999954333323444321 11111234444332 6888888889988999
Q ss_pred HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHhhh
Q 011779 436 RRLTMGKRGYERVK--EIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 436 ~~~~~~~~a~~~~~--~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
..+.+...-+.... ..|+-..++..++++|.+.+++.
T Consensus 907 ~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y 945 (966)
T KOG4626|consen 907 YLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKY 945 (966)
T ss_pred HHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHh
Confidence 88888777665432 35899999999999999988754
|
|
| >PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=66.16 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=61.5
Q ss_pred EEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-------------ch
Q 011779 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------GQ 142 (477)
Q Consensus 76 ~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-------------~~ 142 (477)
|||+++... +.++.++++.|.++|+||++++...+.. ......+++++..+ ..
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~~---------~~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDYE---------KYEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCch---------hhhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 578888655 3578999999999999999999854431 11123455554332 12
Q ss_pred hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeec
Q 011779 143 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 187 (477)
.++.+..+||+||+|++.....+..+.+... . .++++++.|+.
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~-~-~~~~i~~~hg~ 109 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLL-K-NKKVIYTVHGS 109 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHc-C-CCCEEEEecCC
Confidence 3555678999999999765333333222211 1 15788899975
|
|
| >PRK10017 colanic acid biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0076 Score=59.20 Aligned_cols=337 Identities=13% Similarity=0.066 Sum_probs=156.7
Q ss_pred cEEEEEecc-CCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhH---------------Hhh-------hhhhh
Q 011779 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEV---------------IYS-------LEHKM 129 (477)
Q Consensus 75 ~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~---------------~~~-------~~~~~ 129 (477)
|||+++..+ +..-|-+-.+..+...|++.. .+++|++..+....... .+. .....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 678888765 444788888999999999765 67888886544322000 000 00000
Q ss_pred -------------hhcCcEE-Eecc-ch-hhHHHhcCCcEEEEcCcch------hhHHHHHhhhCCCccccceeeeeeec
Q 011779 130 -------------WDRGVQV-ISAK-GQ-ETINTALKADLIVLNTAVA------GKWLDAVLKEDVPRVLPNVLWWIHEM 187 (477)
Q Consensus 130 -------------~~~g~~v-~~~~-~~-~~~~~~~~~DiV~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~h~~ 187 (477)
...|... +..+ .. ..+....+.|+++.-.... ...+...+.... ...|++.+-++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l--~gkpv~l~gqsi 158 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFM--AKKPLYMIGHSV 158 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHH--cCCCEEEECCcC
Confidence 0000000 0000 01 1122345789998764111 000011111111 224566666665
Q ss_pred ccccc---hhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhh
Q 011779 188 RGHYF---KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (477)
Q Consensus 188 ~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~ 264 (477)
.+... .......++.++.+...-....+ +.+.+|++.+++.+.+.. .+.-+....... . ...+...+
T Consensus 159 GPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~-----~Lk~lGv~~~~v~~~aDp---AF~L~~~~~~~~-~-~~~~~~~~ 228 (426)
T PRK10017 159 GPFQDEQFNQLANYVFGHCDALILRESVSLD-----LMKRSNITTAKVEHGVDT---AWLVDHHTEDFT-A-SYAVQHWL 228 (426)
T ss_pred CCcCCHHHHHHHHHHHhcCCEEEEccHHHHH-----HHHHhCCCccceEEecCh---hhhCCccccccc-c-chhhhhhh
Confidence 43322 11222334455554443333333 334678888778886643 322111100000 0 00111122
Q ss_pred CCCCCCeEEEEE-eeccc-CCC----HHHHHHHHHHHHHHHHhhccCcCceEEEEEec--CCCc-chHHHHHHHHHHHhc
Q 011779 265 GVRNEDLLFAII-NSVSR-GKG----QDLFLHSFYESLELIKEKKLEVPSVHAVIIGS--DMNA-QTKFESELRNYVMQK 335 (477)
Q Consensus 265 ~~~~~~~~il~v-Grl~~-~Kg----~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~--g~~~-~~~~~~~l~~~~~~~ 335 (477)
+...++.+|++. ..+.+ .|+ .+...+.+.++.+.+.+ + +.+++++-- +.+. ...+....++..+.+
T Consensus 229 ~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~---~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 229 DVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIID---E--GYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred cccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHH---C--CCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 222233344433 33321 121 12333444444444433 2 334443332 1100 112344445555555
Q ss_pred CCCCcEEEcc-c--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceee
Q 011779 336 KIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL 412 (477)
Q Consensus 336 ~l~~~v~~~g-~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l 412 (477)
.-+.+++++. . ..++..+++.||++|-.-. -.++=|++.|+|+|...+ ....-|+.+.+ |...++
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y---~~K~~~~~~~l--g~~~~~ 371 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINY---EHKSAGIMQQL--GLPEMA 371 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeee---hHHHHHHHHHc--CCccEE
Confidence 4344444432 1 2567789999999885443 257779999999993211 11122222222 223344
Q ss_pred ecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 413 HPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 413 ~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
++..+.+.+++.+.+.+++++.+..++.
T Consensus 372 ~~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 372 IDIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred echhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 5554444789999999999987655443
|
|
| >PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-08 Score=83.98 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=65.2
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccccc--CCCceEEeecCCceeeecCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA--AGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~--~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+|.+.++.+++.++|+.||++|.- +-+.++.|++++|+|.|..+.+. ..+ .-.....+.+...|..+...
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~------aG~~Ti~E~l~~g~P~I~ip~~~-~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISH------AGAGTIAEALALGKPAIVIPLPG-AADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEEC------S-CHHHHHHHHCT--EEEE--TT-T-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechhhHHHHHHHcCEEEeC------CCccHHHHHHHcCCCeeccCCCC-cchHHHHHHHHHHHHcCCccccCcc
Confidence 6899999999999999999998843 33579999999999999433322 110 00022233344456666655
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
+.+++.|.++|.+++.++..+..+.+++
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5447889999999999988777665554
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B. |
| >COG4671 Predicted glycosyl transferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00034 Score=64.20 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++.+|. -.-|.+++..+++.. ..+.+ ....-++|.|...+. ..++.+.+.+.+. ++|.+..+.
T Consensus 218 E~~~Ilvs~GG--G~dG~eLi~~~l~A~-~~l~~----l~~~~~ivtGP~MP~--~~r~~l~~~A~~~---p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVGG--GADGAELIETALAAA-QLLAG----LNHKWLIVTGPFMPE--AQRQKLLASAPKR---PHISIFEFR 285 (400)
T ss_pred ccceEEEecCC--ChhhHHHHHHHHHHh-hhCCC----CCcceEEEeCCCCCH--HHHHHHHHhcccC---CCeEEEEhh
Confidence 45567777774 345655554444332 21111 111235667765432 2455555544433 689999999
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE-Eeec------CCceeeecCCCCCH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE-IVVN------GTTGLLHPVGKEGI 420 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e-~v~~------~~~G~l~~~~d~~~ 420 (477)
+++..+++.|+..|.-+- =+++.|-+++|+|.++ ....-+-.| +++- |-...+. |.+..+
T Consensus 286 ~~~~~ll~gA~~vVSm~G------YNTvCeILs~~k~aLi------vPr~~p~eEQliRA~Rl~~LGL~dvL~-pe~lt~ 352 (400)
T COG4671 286 NDFESLLAGARLVVSMGG------YNTVCEILSFGKPALI------VPRAAPREEQLIRAQRLEELGLVDVLL-PENLTP 352 (400)
T ss_pred hhHHHHHHhhheeeeccc------chhhhHHHhCCCceEE------eccCCCcHHHHHHHHHHHhcCcceeeC-cccCCh
Confidence 999999999999994433 2789999999999883 222221112 1210 2222333 334458
Q ss_pred HHHHHHHHHHHhC
Q 011779 421 TPLAKNIVKLATH 433 (477)
Q Consensus 421 ~~la~~i~~ll~~ 433 (477)
+.|+++|..++..
T Consensus 353 ~~La~al~~~l~~ 365 (400)
T COG4671 353 QNLADALKAALAR 365 (400)
T ss_pred HHHHHHHHhcccC
Confidence 8999999988873
|
|
| >KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00056 Score=64.37 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=80.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceE----EeecC-Cceeeec-----CCC
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE----IVVNG-TTGLLHP-----VGK 417 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e----~v~~~-~~G~l~~-----~~d 417 (477)
-|..++.+.|.+-|+||+ +|++|.+..|.-.+|+|-| +|+.+|..- .|.+. ..|+.+- ..|
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSv-------tTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~d 562 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSV-------TTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPD 562 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccc-------cccccchhhhHHHHhcCchhceEEEEecccCChh
Confidence 567889999999999999 9999999999999999999 999888643 34332 2454332 123
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~-~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
+++++|++.+.++.. ...|+++-++.| ++.....+|..+...|.+.=...+
T Consensus 563 eSv~qL~~~m~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 563 ESVQQLASFMYEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 347777777777664 345566555444 566677899998887766444333
|
|
| >COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.6e-05 Score=75.61 Aligned_cols=143 Identities=22% Similarity=0.169 Sum_probs=109.0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH---HHHHHHHHHhcCCCCcEE
Q 011779 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF---ESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~---~~~l~~~~~~~~l~~~v~ 342 (477)
++++.+.++++-|+..+|.+.+.+.-...+.+.+++. ..|.+++++.|..-|.+..- ...+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 4567899999999999999999887777777776631 55778888888865444322 222233334433345788
Q ss_pred Eccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee--cCCceeeecCCC
Q 011779 343 FVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV--NGTTGLLHPVGK 417 (477)
Q Consensus 343 ~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~--~~~~G~l~~~~d 417 (477)
|+.. ++-...++.++||-...|..-.|..|..-+-||.-|.+-| +|--|...|+.+ .++||+++....
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGalti-------gtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTL-------GTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCcee-------eccccHHHHHHHhcCCCceEEeCCch
Confidence 8875 3444556899999998887768999999999999999999 999999999986 789999998764
|
|
| >PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=73.26 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=91.7
Q ss_pred CCCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE
Q 011779 268 NEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~ 342 (477)
++..+++..|..... +-...+++|++++ + .++++..++. ... .++++||.
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~-----~~~--------~~~p~Nv~ 349 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGE-----VEA--------INLPANVL 349 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCC-----cCc--------ccCCCceE
Confidence 345777778886532 2234455555433 4 4666665541 111 24568999
Q ss_pred EccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCH
Q 011779 343 FVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 343 ~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~ 420 (477)
+.++.. -.+++ ..+++|| ..|-..++.||+.+|+|+|+.|.. .|.......++..+.|...+..+.+.
T Consensus 350 i~~w~P-q~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~---~DQ~~Na~rv~~~G~G~~l~~~~~t~ 419 (507)
T PHA03392 350 TQKWFP-QRAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMM---GDQFYNTNKYVELGIGRALDTVTVSA 419 (507)
T ss_pred EecCCC-HHHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCC---ccHHHHHHHHHHcCcEEEeccCCcCH
Confidence 999864 35677 4589999 444457899999999999932111 13333444455556788887766568
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
+++.++|.++++|+..++...+-++.
T Consensus 420 ~~l~~ai~~vl~~~~y~~~a~~ls~~ 445 (507)
T PHA03392 420 AQLVLAIVDVIENPKYRKNLKELRHL 445 (507)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998766655444433
|
|
| >PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=71.39 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=33.4
Q ss_pred EEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCC
Q 011779 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPS 116 (477)
Q Consensus 76 ~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 116 (477)
||++++.++.| ||...++..|+++|+++||+|.|+++..+.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~ 45 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGF 45 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchh
Confidence 69999988777 999999999999999999999999987643
|
4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A .... |
| >PRK14986 glycogen phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00096 Score=69.08 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc--------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 335 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-------- 335 (477)
.++++.+.++++-|+..+|...+ ++..+..+.+...+........++++.|..-|.+.. .+.+.+++...
T Consensus 538 ~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIk~I~~va~~in~Dp 616 (815)
T PRK14986 538 VVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYM-AKHIIHLINDVAKVINNDP 616 (815)
T ss_pred ccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHH-HHHHHHHHHHHHHHhccCh
Confidence 35677889999999999999999 888877776544332112235889999986554433 33333333221
Q ss_pred CCCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 336 KIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 336 ~l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
.+.+ +|.|+.. ++--..++.++|+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 617 ~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtl-------gtlDG~nvEi~e~vG~eN 689 (815)
T PRK14986 617 QIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTI-------GTLDGANVEMLEHVGEEN 689 (815)
T ss_pred hhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceee-------eccCCchhHHHHhcCCCc
Confidence 2334 6888875 3445667899999998888768999999999999999999 9999999998876 789
Q ss_pred eeeecCCCCCHHHHHHH
Q 011779 410 GLLHPVGKEGITPLAKN 426 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~ 426 (477)
|+++... .++..+.
T Consensus 690 ~~~fG~~---~~ev~~~ 703 (815)
T PRK14986 690 IFIFGNT---AEEVEAL 703 (815)
T ss_pred EEEeCCC---HHHHHHH
Confidence 9999765 4555443
|
|
| >TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=67.45 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 336 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~------- 336 (477)
.++++.+..+++-|+..+|...+ ++..+..+.+...+........++++.|...|... ..+.+.+++....
T Consensus 522 ~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~iN~Dp 600 (794)
T TIGR02093 522 EVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSVAEVVNNDP 600 (794)
T ss_pred ccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHHHHHhccCh
Confidence 35577788899999999999999 88887777654433211122468889998655443 3444444444332
Q ss_pred -CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 337 -IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 337 -l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
+.+ +|.|+.. ++--..++.+||+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 601 ~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltl-------gtlDGanvEi~e~vG~eN 673 (794)
T TIGR02093 601 AVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTI-------GTLDGANVEIREEVGAEN 673 (794)
T ss_pred hhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCccee-------ecccchhHHHHHHhCccc
Confidence 344 6888875 3556667999999998888768999999999999999999 9999999998876 789
Q ss_pred eeeecCCCCCHHHHHHH
Q 011779 410 GLLHPVGKEGITPLAKN 426 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~ 426 (477)
+++|-.. .++..+.
T Consensus 674 ~fiFG~~---~~ev~~~ 687 (794)
T TIGR02093 674 IFIFGLT---VEEVEAL 687 (794)
T ss_pred EEEcCCC---HHHHHHH
Confidence 9998765 4555443
|
This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources. |
| >cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=67.79 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=108.2
Q ss_pred CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc--------C
Q 011779 266 VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK--------K 336 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~ 336 (477)
++++.+.++++-|+..+|.+.+ ++..+..+.+............++++.|...|... ..+.+.+++... .
T Consensus 526 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHhccChh
Confidence 5678899999999999999999 88877776654333111123478888888655443 233333333322 1
Q ss_pred CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCce
Q 011779 337 IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTG 410 (477)
Q Consensus 337 l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G 410 (477)
+.+ +|.|+.. ++--..++.+||+-...|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|+
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltl-------gtlDGanvEi~e~vG~eN~ 677 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTI-------GTLDGANVEIAEEVGEENI 677 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceee-------ecccchhHHHHHHhCcCcE
Confidence 334 6888875 3555667899999998888768999999999999999999 9999999998876 7899
Q ss_pred eeecCCCCCHHHHHH
Q 011779 411 LLHPVGKEGITPLAK 425 (477)
Q Consensus 411 ~l~~~~d~~~~~la~ 425 (477)
++|-.. .++..+
T Consensus 678 fiFG~~---~~ev~~ 689 (797)
T cd04300 678 FIFGLT---AEEVEA 689 (797)
T ss_pred EEeCCC---HHHHHH
Confidence 999765 454443
|
It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.021 Score=59.37 Aligned_cols=191 Identities=16% Similarity=0.071 Sum_probs=130.8
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
.+..+|-|+|...|..............+++..+ .++.+|+-+-|+..-||+..=+.++.++....++ -.+.+.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe---~~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPE---WIDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChh---hhceEE
Confidence 4667888999888766554443334455666655 4677888889999999999999999999885554 234566
Q ss_pred EEEEecCCCcchHHHHHHHHHH----Hh----cCC--CCcEEEccc---cCCHHHHHHhcCEEEEcCCCCCCcccHHHHH
Q 011779 311 AVIIGSDMNAQTKFESELRNYV----MQ----KKI--QDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~----~~----~~l--~~~v~~~g~---~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lE 377 (477)
++.+..+...+.+..++++..+ .+ .+- ...|+++-. ..++-++++.+|+++..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 7666655433333222333222 21 111 123433332 2778889999999999998 9999999999
Q ss_pred HHHcC----CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 378 AMAFQ----LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 378 Ama~G----~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+..|. .+.| .+..-|..+.+++ ...++.+.| .++++.+|...++.++...++
T Consensus 392 ~i~~~~~~~~~lV-------lsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 392 YILCQENKKSVLV-------LSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEEREL 447 (732)
T ss_pred HHHhhcccCCceE-------Eeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHHhh
Confidence 98875 5677 6777777777644 567888888 899999999999855443333
|
|
| >PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0064 Score=62.24 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=92.3
Q ss_pred CCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh--------cC
Q 011779 266 VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ--------KK 336 (477)
Q Consensus 266 ~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~--------~~ 336 (477)
++++.+.++++-|+..+|...+ ++..+..+.+...........+++++.|.--|.+.. .+++.+++.+ -.
T Consensus 440 ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~-gK~iIk~I~~va~~in~Dp~ 518 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYM-GKEIIKLINNVAEVINNDPE 518 (713)
T ss_dssp --TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HH-HHHHHHHHHHHHHHHCT-TT
T ss_pred CCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHH-HHHHHHHHHHHHHHHhcChh
Confidence 5678899999999999999988 555555554433332112345889999986554432 3333333322 12
Q ss_pred CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCce
Q 011779 337 IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTG 410 (477)
Q Consensus 337 l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G 410 (477)
+.+ +|.|+.. ++--..++.++||-+..|+.-.|..|..-+-||.-|.+-+ ++--|...|+.+. .+|.
T Consensus 519 v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~l-------stlDG~niEi~e~vG~eN~ 591 (713)
T PF00343_consen 519 VGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNL-------STLDGWNIEIAEAVGEENI 591 (713)
T ss_dssp TCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEE-------EESSTCHHHHHHHH-GGGS
T ss_pred hccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEE-------ecccchhHHHHHhcCCCcE
Confidence 334 6888875 3445566899999998887668999999999999999999 9999998888753 3577
Q ss_pred eeecCCCCCHHHHHH
Q 011779 411 LLHPVGKEGITPLAK 425 (477)
Q Consensus 411 ~l~~~~d~~~~~la~ 425 (477)
++|-.. .+++.+
T Consensus 592 fiFG~~---~~ev~~ 603 (713)
T PF00343_consen 592 FIFGLT---AEEVEE 603 (713)
T ss_dssp EEES-B---HHHHHH
T ss_pred EEcCCC---HHHHHH
Confidence 887653 455443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B .... |
| >PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.005 Score=62.63 Aligned_cols=152 Identities=14% Similarity=0.050 Sum_probs=86.5
Q ss_pred HHHHHhhCC-CCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC
Q 011779 258 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 258 ~~~r~~~~~-~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
+++.+-+.- .++..+++..|.+.. .-.+..++++.+..+ +.|+ ++++.-++. ....
T Consensus 264 ~~~~~~~~~~~~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~-----~~~~--------- 320 (500)
T PF00201_consen 264 EELWNFLDSSGKKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGE-----PPEN--------- 320 (500)
T ss_dssp HHHHHHTSTTTTTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCS-----HGCH---------
T ss_pred cccchhhhccCCCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-ccccccccc-----cccc---------
Confidence 344444443 245677778888753 234444444444433 4466 677765541 1111
Q ss_pred CCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCC
Q 011779 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
+++|+.+..|..+ .++++...+-++=+ -|--.++.||+.+|+|+|+.|. ..|.......+++...|...+..
T Consensus 321 l~~n~~~~~W~PQ-~~lL~hp~v~~fit----HgG~~s~~Ea~~~gvP~l~~P~---~~DQ~~na~~~~~~G~g~~l~~~ 392 (500)
T PF00201_consen 321 LPKNVLIVKWLPQ-NDLLAHPRVKLFIT----HGGLNSTQEALYHGVPMLGIPL---FGDQPRNAARVEEKGVGVVLDKN 392 (500)
T ss_dssp HHTTEEEESS--H-HHHHTSTTEEEEEE----S--HHHHHHHHHCT--EEE-GC---STTHHHHHHHHHHTTSEEEEGGG
T ss_pred ccceEEEeccccc-hhhhhcccceeeee----ccccchhhhhhhccCCccCCCC---cccCCccceEEEEEeeEEEEEec
Confidence 2358888888643 46776555433323 3445789999999999993211 12333344555566678888877
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+-+.+++.++|.++++|+..++..
T Consensus 393 ~~~~~~l~~ai~~vl~~~~y~~~a 416 (500)
T PF00201_consen 393 DLTEEELRAAIREVLENPSYKENA 416 (500)
T ss_dssp C-SHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHH
Confidence 766899999999999998655443
|
This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A .... |
| >PLN02448 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.026 Score=56.49 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=81.8
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++..|.... -..+.+-+.+.-+.+ .+..++++..+. ...+.+.. .+++.+.++.
T Consensus 273 ~~~vvyvsfGs~~~-~~~~~~~~~~~~l~~---------~~~~~lw~~~~~------~~~~~~~~-----~~~~~v~~w~ 331 (459)
T PLN02448 273 EGSVLYVSLGSFLS-VSSAQMDEIAAGLRD---------SGVRFLWVARGE------ASRLKEIC-----GDMGLVVPWC 331 (459)
T ss_pred CCceEEEeeccccc-CCHHHHHHHHHHHHh---------CCCCEEEEEcCc------hhhHhHhc-----cCCEEEeccC
Confidence 34567777887643 223333333333322 456777765541 11222221 2467777875
Q ss_pred CCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC-----CCCC
Q 011779 348 LTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV-----GKEG 419 (477)
Q Consensus 348 ~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~-----~d~~ 419 (477)
. -..+++..++ || ..+--++++||+++|+|+|+-+ . ..|.......+.+. +.|+-+.. +..+
T Consensus 332 p-Q~~iL~h~~v~~fv------tHgG~nS~~eal~~GvP~l~~P--~-~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~ 401 (459)
T PLN02448 332 D-QLKVLCHSSVGGFW------THCGWNSTLEAVFAGVPMLTFP--L-FWDQPLNSKLIVEDWKIGWRVKREVGEETLVG 401 (459)
T ss_pred C-HHHHhccCccceEE------ecCchhHHHHHHHcCCCEEecc--c-cccchhhHHHHHHHhCceEEEecccccCCcCc
Confidence 3 3457777776 55 2333468999999999999311 1 22333333444332 34555531 1123
Q ss_pred HHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 011779 420 ITPLAKNIVKLATHV-ERRLTMGKRGYE 446 (477)
Q Consensus 420 ~~~la~~i~~ll~~~-~~~~~~~~~a~~ 446 (477)
.+++++++.+++.++ +.-++|++++.+
T Consensus 402 ~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 402 REEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 799999999999864 333444444443
|
|
| >PLN02670 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.018 Score=57.29 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=68.5
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK--- 417 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d--- 417 (477)
+.+.+|..+ .++++..++-.+-| .+--++++||+++|+|+|+.|. ..|.......+..-+.|+.++..+
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~Fvt----HcGwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~v~~~g~Gv~l~~~~~~~ 412 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLT----HCGWNSVVEGLGFGRVLILFPV---LNEQGLNTRLLHGKKLGLEVPRDERDG 412 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeee----cCCcchHHHHHHcCCCEEeCcc---hhccHHHHHHHHHcCeeEEeeccccCC
Confidence 566677543 45777766633323 2334789999999999993221 223333333444445676664311
Q ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHH
Q 011779 418 -EGITPLAKNIVKLATHVERRLTMGKRGYE---RVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 418 -~~~~~la~~i~~ll~~~~~~~~~~~~a~~---~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
-+.+++.+++.+++.+++ -+++.+++++ .+.++=..+++++.+++.+.+.
T Consensus 413 ~~~~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 413 SFTSDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred cCcHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 237999999999998752 2234444443 3333344555555555555443
|
|
| >PRK14985 maltodextrin phosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.002 Score=66.51 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=105.6
Q ss_pred CCCCCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC-------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 336 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~------- 336 (477)
.++++.+.++++-|+..+|...+ ++..+..+.+...+........++++.|...|... ..+.+.+++....
T Consensus 524 ~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp 602 (798)
T PRK14985 524 EINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAEVINNDP 602 (798)
T ss_pred ccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhcCCh
Confidence 35677788999999999999999 88887777654333111113478999998655443 3333333333221
Q ss_pred -CCC--cEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 337 -IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 337 -l~~--~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
+.+ +|.|+.. ++--..++.++|+....|+.-.|..|..-+-+|.-|.+-+ +|--|...|+.++ ++|
T Consensus 603 ~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtl-------gtlDGanvEi~e~vG~eN 675 (798)
T PRK14985 603 LVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTV-------GTLDGANVEIAEQVGEEN 675 (798)
T ss_pred hhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceee-------ecccchHHHHHHHhCcCc
Confidence 233 6888875 3555667899999998888768999999999999999999 9999998898865 789
Q ss_pred eeeecCC
Q 011779 410 GLLHPVG 416 (477)
Q Consensus 410 G~l~~~~ 416 (477)
|+++-..
T Consensus 676 ~f~fG~~ 682 (798)
T PRK14985 676 IFIFGHT 682 (798)
T ss_pred EEEeCCC
Confidence 9999765
|
|
| >PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=45.57 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch-hhHHHhcCCcEEEEcCcchhhHH-
Q 011779 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETINTALKADLIVLNTAVAGKWL- 165 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~DiV~~~~~~~~~~~- 165 (477)
|+.+...++-....+.|++++++........... ........+.++..... ..+.+...+|++.+++..+...-
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~d----sH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE 77 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPD----SHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQE 77 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTT----SSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-H
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCcc----ccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHH
Confidence 7778888999999999999999985443211100 11111222333333333 34445578999999984433221
Q ss_pred ------HHHhhhCCCccccceeeeeeecccccchh--hHhhcccccccceeeehhhH---HHHHHHhHhh--hccCCCCe
Q 011779 166 ------DAVLKEDVPRVLPNVLWWIHEMRGHYFKL--DYVKHLPLVAGAMIDSHVTA---EYWKNRTRER--LRIKMPDT 232 (477)
Q Consensus 166 ------~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~--~~~~~~~i 232 (477)
..++..-.|. .+++...|+.+.....+ .....++.+|.+.+.+.... ..+...+... ++-..++.
T Consensus 78 ~~iNnY~kii~~Ik~~--ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~ 155 (355)
T PF11440_consen 78 AIINNYEKIIKKIKPS--IKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKF 155 (355)
T ss_dssp HHHHHHHHHHHCS-TT--SEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-----
T ss_pred HHHHHHHHHHHhcccc--ceeEEEeeccceeeccccccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhc
Confidence 1222221111 24566778765433222 23344566677776654332 2222222211 11111223
Q ss_pred EEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE---EEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCce
Q 011779 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (477)
Q Consensus 233 ~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---l~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~ 309 (477)
..+.|.-++. + -+..|..+-.+...+.. +|+||..-.||...+++.-.+..+ -++.
T Consensus 156 p~v~nfqpp~-------~------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK--------~~~~ 214 (355)
T PF11440_consen 156 PMVFNFQPPM-------D------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILK--------PAGF 214 (355)
T ss_dssp --EEE----B--------------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTT--------TTT-
T ss_pred ceeeecCCcc-------c------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcC--------Ccch
Confidence 3333322211 1 24455655544555655 899999999999999998887653 2677
Q ss_pred EEEEEecCCCcchHHHHHHHHH-----------HHhcCCC--CcEEEccc-c-CCHHHHHHhcCEEEEcCCC----CCCc
Q 011779 310 HAVIIGSDMNAQTKFESELRNY-----------VMQKKIQ--DRVHFVNK-T-LTVAPYLAAIDVLVQNSQA----WGEC 370 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~-----------~~~~~l~--~~v~~~g~-~-~~l~~~~~~aDv~v~pS~~----~~E~ 370 (477)
.-++-|-.- . +..-.+.+. +.+..+. .-+..+|. + ++..+.|+.+-..+.-+.. -.+.
T Consensus 215 ~t~~~Gier--S-~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~ 291 (355)
T PF11440_consen 215 KTIMEGIER--S-PAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRS 291 (355)
T ss_dssp EEEEE---S--S-THHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS-
T ss_pred hHHhhhhhc--C-CceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhh
Confidence 778877531 1 111112221 0011111 23556664 3 7788888888766544331 1234
Q ss_pred ccHHHHHHHHcCC-CEEeeccccccccCCCceE-------EeecCCceeeecCCCCCHHHHHHHHHHHHhC
Q 011779 371 FGRITIEAMAFQL-PVLLQKCLYQGTAAGGTTE-------IVVNGTTGLLHPVGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 371 ~g~~~lEAma~G~-PvI~~~~~~~~~~~gg~~e-------~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~ 433 (477)
+-.+-+|..|||. ||. -...|.... ++......+.++..| .++-.+.|.++.++
T Consensus 292 mEYt~iE~~A~GtIPVF-------~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~ 353 (355)
T PF11440_consen 292 MEYTQIELIAVGTIPVF-------DKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANN 353 (355)
T ss_dssp --HHHHHHHHCTSEEEE-------EHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-
T ss_pred hhhheeeeeeeceeeee-------eccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhcc
Confidence 6678999999997 555 444443322 222333456777666 88888888777654
|
coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B. |
| >COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.48 Score=45.28 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCeEEEEEe-ecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 269 EDLLFAIIN-SVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 269 ~~~~il~vG-rl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.+++..| +-...|+.. ...+.++.+.+ ...++++.|+. ...+..+++.+.++- .+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~---------~~~~Vvl~g~~-----~e~e~~~~i~~~~~~--~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA---------KGYQVVLFGGP-----DEEERAEEIAKGLPN--AVILAG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH---------CCCEEEEecCh-----HHHHHHHHHHHhcCC--ccccCC
Confidence 466777777 655777764 45555555544 33788999987 456666666665532 223667
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+.. | .+-=|.|.|+|+|+.
T Consensus 239 k~sL~e~~~li~~a~l~I~~DS------g-~~HlAaA~~~P~I~i 276 (334)
T COG0859 239 KTSLEELAALIAGADLVIGNDS------G-PMHLAAALGTPTIAL 276 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccCC------h-HHHHHHHcCCCEEEE
Confidence 53 889999999999996654 3 344489999999954
|
|
| >PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.022 Score=56.56 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=58.6
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~ 415 (477)
+|..+.++..+ ..+++..++ ||. .+--++++||+++|+|+|+ .|. ..|.......+.+. +.|+-+.
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fvt------H~G~nS~~Ea~~~GvP~l~--~P~-~~DQ~~na~~~~~~~~~G~~~~- 392 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFWS------HCGWNSTLESIGEGVPMIC--KPF-SSDQKVNARYLECVWKIGIQVE- 392 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeeee------cCchhHHHHHHHcCCCEEe--ccc-cccCHHHHHHHHHHhCeeEEeC-
Confidence 56677777533 347777555 663 2233689999999999993 222 33444444444333 4666553
Q ss_pred CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 416 GKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
++.+.+++++++.+++.+++ -+++.+++++
T Consensus 393 ~~~~~~~v~~av~~lm~~~~-~~~~r~~a~~ 422 (451)
T PLN02410 393 GDLDRGAVERAVKRLMVEEE-GEEMRKRAIS 422 (451)
T ss_pred CcccHHHHHHHHHHHHcCCc-HHHHHHHHHH
Confidence 23337999999999998754 3344444443
|
|
| >PF15024 Glyco_transf_18: Glycosyltransferase family 18 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.3 Score=48.63 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=89.3
Q ss_pred Eee-cccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc--cCCHHH
Q 011779 276 INS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAP 352 (477)
Q Consensus 276 vGr-l~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~--~~~l~~ 352 (477)
.|. -.-.||-+..++++.+. -+++-.|.+... ... .+++-|.=+|. .+++..
T Consensus 283 yGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~---------~~P~~V~NHG~l~~~ef~~ 337 (559)
T PF15024_consen 283 YGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPP---------NVPSFVKNHGILSGDEFQQ 337 (559)
T ss_pred EccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCc---------ccchhhhhcCcCCHHHHHH
Confidence 354 33366777777777653 456766655531 111 22222333333 388999
Q ss_pred HHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC---------------ceEEeec---------CC
Q 011779 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG---------------TTEIVVN---------GT 408 (477)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg---------------~~e~v~~---------~~ 408 (477)
+++.+.+||--... +| |=+.+||+|.|+|.| -..... .+++-.. .-
T Consensus 338 lL~~akvfiGlGfP-~E--gPaPlEAia~G~vFl-------Np~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~P 407 (559)
T PF15024_consen 338 LLRKAKVFIGLGFP-YE--GPAPLEAIANGCVFL-------NPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEP 407 (559)
T ss_pred HHHhhhEeeecCCC-CC--CCChHHHHHcCCccc-------cccCCCCCcccccccccCCCCcceeccCChHHHhhCCCC
Confidence 99999999944432 34 346899999999999 332211 1121110 11
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
.-+.++.+| .+++.+||.+++..+- .-++-..|+-+.|.+++..+++.
T Consensus 408 hVytVd~~n--~~~v~~Avk~il~~~v---------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 408 HVYTVDINN--STEVEAAVKAILATPV---------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred eEEEEcCCC--HHHHHHHHHHHHhcCC---------CCcCCcccCHHHHHHHHHHHHHh
Confidence 335667667 8999999999988642 12344558888888888777654
|
|
| >PLN03004 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.04 Score=54.63 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=58.7
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC-
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG- 416 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~- 416 (477)
.++.+.+|..+ .++++.+++-.+-+ .+--++++||+++|+|+|+. |. ..|.......+.+ -+.|..++.+
T Consensus 334 ~g~~v~~W~PQ-~~iL~H~~v~~FvT----H~G~nS~lEal~~GVP~v~~--P~-~~DQ~~na~~~~~~~g~g~~l~~~~ 405 (451)
T PLN03004 334 KGMVVKSWAPQ-VPVLNHKAVGGFVT----HCGWNSILEAVCAGVPMVAW--PL-YAEQRFNRVMIVDEIKIAISMNESE 405 (451)
T ss_pred CcEEEEeeCCH-HHHhCCCccceEec----cCcchHHHHHHHcCCCEEec--cc-cccchhhHHHHHHHhCceEEecCCc
Confidence 46777787543 45888899833323 23346899999999999932 21 3344444444433 3567666532
Q ss_pred --CCCHHHHHHHHHHHHhCHHHH
Q 011779 417 --KEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~~~~ 437 (477)
..+.+++++++.+++.+++.+
T Consensus 406 ~~~~~~e~l~~av~~vm~~~~~r 428 (451)
T PLN03004 406 TGFVSSTEVEKRVQEIIGECPVR 428 (451)
T ss_pred CCccCHHHHHHHHHHHhcCHHHH
Confidence 124899999999999875533
|
|
| >PLN03007 UDP-glucosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.1 Score=52.56 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=52.2
Q ss_pred CCcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeee-
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLH- 413 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~- 413 (477)
+.++.+.++..+ ..+++.+++ || + .+--++++||+++|+|+|+.|. ..+..-....+.+ -+.|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fv--t----H~G~nS~~Eal~~GVP~v~~P~---~~DQ~~na~~~~~~~~~G~~~~ 413 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFV--T----HCGWNSLLEGVAAGLPMVTWPV---GAEQFYNEKLVTQVLRTGVSVG 413 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceee--e----cCcchHHHHHHHcCCCeeeccc---hhhhhhhHHHHHHhhcceeEec
Confidence 357888888644 568888876 55 3 2234689999999999993211 2233223322211 1233322
Q ss_pred -------cCCCCCHHHHHHHHHHHHhCH
Q 011779 414 -------PVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 414 -------~~~d~~~~~la~~i~~ll~~~ 434 (477)
+.+.-+.+++++++++++.++
T Consensus 414 ~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 414 AKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred cccccccccCcccHHHHHHHHHHHhcCc
Confidence 112223889999999999875
|
|
| >PLN00414 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.097 Score=51.98 Aligned_cols=157 Identities=8% Similarity=-0.029 Sum_probs=86.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEec--CC-CcchHHHHHHHHHHHhcCCCCcEEE
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGS--DM-NAQTKFESELRNYVMQKKIQDRVHF 343 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~--g~-~~~~~~~~~l~~~~~~~~l~~~v~~ 343 (477)
++..+.+..|.+... ..+.+.+.+..|.. .+..| +++-. +. .......+.+++.++.. ...+
T Consensus 251 ~~sVvyvsfGS~~~~-~~~q~~e~a~gL~~---------s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~----g~vv 316 (446)
T PLN00414 251 PGSVVFCAFGTQFFF-EKDQFQEFCLGMEL---------TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGR----GIVW 316 (446)
T ss_pred CCceEEEeecccccC-CHHHHHHHHHHHHH---------cCCCeEEEEecCCCcccchhhCChhHHHHhcCC----CeEE
Confidence 456777788886543 33556666665533 23333 33322 10 00111223344444432 2355
Q ss_pred ccccCCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee-cCCceeeecCC---C
Q 011779 344 VNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV-NGTTGLLHPVG---K 417 (477)
Q Consensus 344 ~g~~~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~-~~~~G~l~~~~---d 417 (477)
.++..+ ..+++.. +.|| ..+--++++||+++|+|+|+.+. ..+..-....+. .-+.|..+..+ .
T Consensus 317 ~~w~PQ-~~vL~h~~v~~fv------tH~G~nS~~Ea~~~GvP~l~~P~---~~dQ~~na~~~~~~~g~g~~~~~~~~~~ 386 (446)
T PLN00414 317 EGWVEQ-PLILSHPSVGCFV------NHCGFGSMWESLVSDCQIVFIPQ---LADQVLITRLLTEELEVSVKVQREDSGW 386 (446)
T ss_pred eccCCH-HHHhcCCccceEE------ecCchhHHHHHHHcCCCEEecCc---ccchHHHHHHHHHHhCeEEEeccccCCc
Confidence 566533 4577666 5576 23334789999999999993211 223333334442 33456555321 1
Q ss_pred CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHV-ERRLTMGKRGYERV 448 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~~ 448 (477)
.+.+++++++++++.++ +..+++.+++++.-
T Consensus 387 ~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 387 FSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred cCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 23899999999999764 45666777766543
|
|
| >PLN02764 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.083 Score=52.33 Aligned_cols=96 Identities=13% Similarity=-0.040 Sum_probs=56.6
Q ss_pred EEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC-
Q 011779 341 VHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~- 416 (477)
+.+.+|..+ .++++...+ || ..+--++++||+.+|+|+|+. |. ..+.......+.+ -..|+-+...
T Consensus 319 ~v~~~W~PQ-~~vL~h~~v~~Fv------tH~G~nS~~Eal~~GVP~l~~--P~-~~DQ~~na~~l~~~~g~gv~~~~~~ 388 (453)
T PLN02764 319 VVWGGWVQQ-PLILSHPSVGCFV------SHCGFGSMWESLLSDCQIVLV--PQ-LGDQVLNTRLLSDELKVSVEVAREE 388 (453)
T ss_pred cEEeCCCCH-HHHhcCcccCeEE------ecCCchHHHHHHHcCCCEEeC--Cc-ccchHHHHHHHHHHhceEEEecccc
Confidence 455566433 356666544 66 233357899999999999931 11 2233333344432 2345543221
Q ss_pred --CCCHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Q 011779 417 --KEGITPLAKNIVKLATHV-ERRLTMGKRGYE 446 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~-~~~~~~~~~a~~ 446 (477)
+.+.+++.+++++++.++ +..+++.+++++
T Consensus 389 ~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 389 TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 223899999999999864 445566666554
|
|
| >PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.18 Score=50.54 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=52.0
Q ss_pred CcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~ 415 (477)
.++.+.++..+ ..+++. .++||. .+--++++||+++|+|+|+- |. ..|.......+.+ -+.|.-...
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fvt------H~G~nS~~Eal~~GvP~l~~--P~-~~DQ~~na~~v~~~~gvG~~~~~ 412 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFLT------HCGWNSVLEGLVAGVPMLAW--PM-AADQFVNASLLVDELKVAVRVCE 412 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEEe------cCCchHHHHHHHcCCCEEeC--Cc-cccchhhHHHHHHhhceeEEecc
Confidence 46777788644 557775 566772 33346899999999999932 21 2333333333322 245555522
Q ss_pred C---CCCHHHHHHHHHHHHh-CHH
Q 011779 416 G---KEGITPLAKNIVKLAT-HVE 435 (477)
Q Consensus 416 ~---d~~~~~la~~i~~ll~-~~~ 435 (477)
+ ..+.+++++++.+++. +++
T Consensus 413 ~~~~~~~~~~v~~~v~~~m~~~~~ 436 (477)
T PLN02863 413 GADTVPDSDELARVFMESVSENQV 436 (477)
T ss_pred CCCCCcCHHHHHHHHHHHhhccHH
Confidence 1 1126899999999884 443
|
|
| >PLN02562 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.11 Score=51.87 Aligned_cols=92 Identities=13% Similarity=-0.009 Sum_probs=57.5
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d 417 (477)
+|+.+.++. .-..+++..++-.+-+ .+--++++||+.+|+|+|+. |. ..|.......+.+. ..|+-+..-+
T Consensus 328 ~~~~v~~w~-PQ~~iL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~--P~-~~DQ~~na~~~~~~~g~g~~~~~~~ 399 (448)
T PLN02562 328 KQGKVVSWA-PQLEVLKHQAVGCYLT----HCGWNSTMEAIQCQKRLLCY--PV-AGDQFVNCAYIVDVWKIGVRISGFG 399 (448)
T ss_pred cCEEEEecC-CHHHHhCCCccceEEe----cCcchhHHHHHHcCCCEEeC--Cc-ccchHHHHHHHHHHhCceeEeCCCC
Confidence 577777875 3356777766533323 23346899999999999931 11 23444444444432 4555553333
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~ 440 (477)
.+++++++.+++.+++.+++.
T Consensus 400 --~~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 400 --QKEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred --HHHHHHHHHHHhCCHHHHHHH
Confidence 899999999999887655443
|
|
| >PLN02208 glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=51.14 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=60.7
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~d 417 (477)
.++.+.+|..+ .++++...+-.+-|. +--++++||+++|+|+|+. |. ..|.......+.+ -+.|..+...+
T Consensus 311 ~g~~v~~W~PQ-~~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~--P~-~~DQ~~na~~~~~~~g~gv~~~~~~ 382 (442)
T PLN02208 311 RGVVWGGWVQQ-PLILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLI--PF-LSDQVLFTRLMTEEFEVSVEVSREK 382 (442)
T ss_pred CCcEeeccCCH-HHHhcCCccCeEEcc----CCchHHHHHHHcCCCEEec--Cc-chhhHHHHHHHHHHhceeEEecccc
Confidence 35667777543 347777776333343 2336899999999999932 11 2233333333333 34566554321
Q ss_pred ---CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Q 011779 418 ---EGITPLAKNIVKLATHV-ERRLTMGKRGYER 447 (477)
Q Consensus 418 ---~~~~~la~~i~~ll~~~-~~~~~~~~~a~~~ 447 (477)
-+.++++++|.++++++ +..+++.+++++.
T Consensus 383 ~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 383 TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 23799999999999865 4456666666543
|
|
| >PLN02210 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.094 Score=52.32 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=76.9
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|.+... ..+.+-+.+.-+.. .+.+|++ ++..... .....+.+... .++..+.++
T Consensus 268 ~~svvyvsfGS~~~~-~~~~~~e~a~~l~~---------~~~~flw~~~~~~~~--~~~~~~~~~~~----~~~g~v~~w 331 (456)
T PLN02210 268 RSSVVYISFGSMLES-LENQVETIAKALKN---------RGVPFLWVIRPKEKA--QNVQVLQEMVK----EGQGVVLEW 331 (456)
T ss_pred CCceEEEEecccccC-CHHHHHHHHHHHHh---------CCCCEEEEEeCCccc--cchhhHHhhcc----CCCeEEEec
Confidence 345777788886542 34444444444433 3345554 4432110 11122332221 134455677
Q ss_pred cCCHHHHHHhcC--EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC----CCC
Q 011779 347 TLTVAPYLAAID--VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG----KEG 419 (477)
Q Consensus 347 ~~~l~~~~~~aD--v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~----d~~ 419 (477)
..+ ..+++.++ +||.- +-=++++||+++|+|+|+- |. ..|..-....+.+ -+.|..+... .-+
T Consensus 332 ~PQ-~~iL~h~~vg~FitH------~G~nS~~Eai~~GVP~v~~--P~-~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~ 401 (456)
T PLN02210 332 SPQ-EKILSHMAISCFVTH------CGWNSTIETVVAGVPVVAY--PS-WTDQPIDARLLVDVFGIGVRMRNDAVDGELK 401 (456)
T ss_pred CCH-HHHhcCcCcCeEEee------CCcccHHHHHHcCCCEEec--cc-ccccHHHHHHHHHHhCeEEEEeccccCCcCC
Confidence 544 45788887 56622 2235899999999999932 11 2233333334443 3466665421 123
Q ss_pred HHHHHHHHHHHHhCHH
Q 011779 420 ITPLAKNIVKLATHVE 435 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~ 435 (477)
.+++++++++++.+++
T Consensus 402 ~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 402 VEEVERCIEAVTEGPA 417 (456)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7899999999997654
|
|
| >COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=39.91 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCCCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 257 REHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 257 ~~~~r~~~~~~~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
++.+++.+.. +..++-++||.-.+.=.. |.+.+....+.+.+.+ ....|++--+.- -.+.++..++.
T Consensus 150 ~e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~ 218 (329)
T COG3660 150 REAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKN 218 (329)
T ss_pred HHHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHh
Confidence 4555555533 455777778865543332 4444444444444433 456666665541 23445555554
Q ss_pred -cCCCCcEEEcccc---CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 335 -KKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 335 -~~l~~~v~~~g~~---~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.-..-+.+-+.. +-...++++||.++..-- .=..+-||.+.|+||-
T Consensus 219 ~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~ 269 (329)
T COG3660 219 NLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVF 269 (329)
T ss_pred ccccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeE
Confidence 3322334444431 347778999999997643 1245789999999999
|
|
| >PLN02173 UDP-glucosyl transferase family protein | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.16 Score=50.50 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=59.3
Q ss_pred CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCC
Q 011779 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGK 417 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d 417 (477)
+++.+.+|..+ .++++..++-.+-+ .+-.++++||+++|+|+|+-|. ..+..-....+.+. +.|.-+...+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~Fvt----HcGwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~v~~~~g~Gv~v~~~~ 388 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMT----HCGWNSTMEGLSLGVPMVAMPQ---WTDQPMNAKYIQDVWKVGVRVKAEK 388 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEe----cCccchHHHHHHcCCCEEecCc---hhcchHHHHHHHHHhCceEEEeecc
Confidence 57888888643 45787777433333 3345799999999999993211 22333334444432 3555543221
Q ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 418 ----EGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 418 ----~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
-+.+++++++.+++.+++ .+++.+++++
T Consensus 389 ~~~~~~~e~v~~av~~vm~~~~-~~~~r~~a~~ 420 (449)
T PLN02173 389 ESGIAKREEIEFSIKEVMEGEK-SKEMKENAGK 420 (449)
T ss_pred cCCcccHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 027999999999998643 2444444443
|
|
| >TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.7 Score=40.77 Aligned_cols=84 Identities=11% Similarity=-0.055 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 285 ~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
.+.+.+++..+.++ .+.+++++.-... .+.+..+++.+.+.-+..+......+++..+++.+|++|-..
T Consensus 190 ~~~l~~~l~~l~~~--------~g~~v~~i~~~~~---~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~R 258 (298)
T TIGR03609 190 LLRLLRALDRLQRD--------TGAFVLFLPFQQP---QDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMR 258 (298)
T ss_pred HHHHHHHHHHHHHh--------hCCeEEEEeCCcc---hhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEec
Confidence 44555555555431 2455555543211 233444444444433334432222367888899999887655
Q ss_pred CCCCCcccHHHHHHHHcCCCEE
Q 011779 365 QAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI 386 (477)
. -.++=|+.+|+|+|
T Consensus 259 l-------H~~I~A~~~gvP~i 273 (298)
T TIGR03609 259 L-------HALILAAAAGVPFV 273 (298)
T ss_pred h-------HHHHHHHHcCCCEE
Confidence 4 35777999999999
|
The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395). |
| >PLN02555 limonoid glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.28 Score=49.13 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=57.9
Q ss_pred CCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-Cceeeec
Q 011779 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~ 414 (477)
.+++.+.++..+ ..++ .+..+||. .+--++++||+.+|+|+|+. |. ..|.......+.+. +.|+-+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fvt------H~G~nS~~Eai~~GVP~l~~--P~-~~DQ~~Na~~~~~~~gvGv~l~ 405 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFVT------HCGWNSTMEALSSGVPVVCF--PQ-WGDQVTDAVYLVDVFKTGVRLC 405 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEEe------cCCcchHHHHHHcCCCEEeC--CC-ccccHHHHHHHHHHhCceEEcc
Confidence 357777787643 4466 44666772 33346899999999999932 21 22333333333333 4555542
Q ss_pred -----CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 415 -----VGKEGITPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 415 -----~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
.+.-+.+++++++.+++.+++ -+++++++++
T Consensus 406 ~~~~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 406 RGEAENKLITREEVAECLLEATVGEK-AAELKQNALK 441 (480)
T ss_pred CCccccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 111237899999999997643 3455555554
|
|
| >PLN02167 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.22 Score=50.11 Aligned_cols=86 Identities=13% Similarity=0.003 Sum_probs=50.4
Q ss_pred CcEEEccccCCHHHHHHhc--CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE-eecCCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI-VVNGTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~a--Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~-v~~~~~G~l~~~ 415 (477)
++..+.++.. -..+++.. +.||.- +--++++||+++|+|+|+ .|. ..|..-.... +..-+.|..+..
T Consensus 340 ~rg~v~~w~P-Q~~iL~h~~vg~fvtH------~G~nS~~Eal~~GvP~l~--~P~-~~DQ~~na~~~~~~~g~g~~~~~ 409 (475)
T PLN02167 340 GRGLVCGWAP-QVEILAHKAIGGFVSH------CGWNSVLESLWFGVPIAT--WPM-YAEQQLNAFTMVKELGLAVELRL 409 (475)
T ss_pred cCeeeeccCC-HHHHhcCcccCeEEee------CCcccHHHHHHcCCCEEe--ccc-cccchhhHHHHHHHhCeeEEeec
Confidence 3456667753 34577664 456632 223589999999999993 121 2233333322 333345665532
Q ss_pred C-------CCCHHHHHHHHHHHHhCH
Q 011779 416 G-------KEGITPLAKNIVKLATHV 434 (477)
Q Consensus 416 ~-------d~~~~~la~~i~~ll~~~ 434 (477)
. ..+.+++++++.+++.++
T Consensus 410 ~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 410 DYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred ccccccCCcccHHHHHHHHHHHhcCC
Confidence 1 113789999999999754
|
|
| >PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.8 Score=40.68 Aligned_cols=243 Identities=14% Similarity=0.043 Sum_probs=121.4
Q ss_pred chhhHHHHHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchhhHHH
Q 011779 88 GGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (477)
Q Consensus 88 G~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (477)
|.+....-|+++|.. .++++..+....+.... ...+..... .+. ...........||+|+...........
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~l--p~~~~~~~~-----~~~-~~~~~~~~~~~pdLiIsaGr~t~~~~~ 73 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRWL--PRLLPAPLR-----ALL-KPFSPALEPPWPDLIISAGRRTAPAAL 73 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhhc--cccccchHH-----Hhh-hcccccccCCCCcEEEECCCchHHHHH
Confidence 566788889999987 37888777644421000 000000000 000 000111223579999998755544433
Q ss_pred HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhcc-CCCCeEE---EecCCchh
Q 011779 167 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYV---VHLGNSKE 242 (477)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~i~v---i~ngvd~~ 242 (477)
.+.+. ... -...+|-+.+... ...+|.+++..+. +. ..+++.. .+|.++.+
T Consensus 74 ~l~r~-~gg----~~~~V~i~~P~~~-------~~~FDlvi~p~HD-------------~~~~~~Nvl~t~ga~~~i~~~ 128 (311)
T PF06258_consen 74 ALRRA-SGG----RTKTVQIMDPRLP-------PRPFDLVIVPEHD-------------RLPRGPNVLPTLGAPNRITPE 128 (311)
T ss_pred HHHHH-cCC----CceEEEEcCCCCC-------ccccCEEEECccc-------------CcCCCCceEecccCCCcCCHH
Confidence 33332 111 0122343332222 2344555554433 12 1233333 34555554
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC--CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 243 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K--g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
.... .+..+..+++-.+.+.+.+.+|.-+..- +.+...+.+.++.+..++ ....+.|..+.-..
T Consensus 129 ~l~~---------a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRTp 194 (311)
T PF06258_consen 129 RLAE---------AAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRTP 194 (311)
T ss_pred HHHH---------HHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCCc
Confidence 3322 1345556666556666777778644322 223222333333332222 33788888875211
Q ss_pred chHHHHHHHHHHHhcCCCCcEEEccc-c-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 321 QTKFESELRNYVMQKKIQDRVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 321 ~~~~~~~l~~~~~~~~l~~~v~~~g~-~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
....+.|++..+. .+.+.+... . +-+..+|+.||.++.+.- + -..+.||++.|+||.
T Consensus 195 -~~~~~~L~~~~~~---~~~~~~~~~~~~nPy~~~La~ad~i~VT~D----S-vSMvsEA~~tG~pV~ 253 (311)
T PF06258_consen 195 -PEAEAALRELLKD---NPGVYIWDGTGENPYLGFLAAADAIVVTED----S-VSMVSEAAATGKPVY 253 (311)
T ss_pred -HHHHHHHHHhhcC---CCceEEecCCCCCcHHHHHHhCCEEEEcCc----c-HHHHHHHHHcCCCEE
Confidence 1244444444432 246633333 2 448899999999998754 2 245899999999999
|
The function of this family is unknown. |
| >PLN02554 UDP-glycosyltransferase family protein | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.23 Score=50.01 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=52.3
Q ss_pred CcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce-EEeecCCceeeecC
Q 011779 339 DRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT-EIVVNGTTGLLHPV 415 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~-e~v~~~~~G~l~~~ 415 (477)
+|+.+.+|.. -..++ .+..+|| ..+--++++||+.+|+|+|+.|. ..|..... .+++.-+.|..++.
T Consensus 342 ~~g~v~~W~P-Q~~iL~H~~v~~Fv------tH~G~nS~~Ea~~~GVP~l~~P~---~~DQ~~Na~~~v~~~g~Gv~l~~ 411 (481)
T PLN02554 342 DIGKVIGWAP-QVAVLAKPAIGGFV------THCGWNSILESLWFGVPMAAWPL---YAEQKFNAFEMVEELGLAVEIRK 411 (481)
T ss_pred cCceEEeeCC-HHHHhCCcccCccc------ccCccchHHHHHHcCCCEEecCc---cccchhhHHHHHHHhCceEEeec
Confidence 5666777753 34567 4455566 23334689999999999993221 22333333 22333344555431
Q ss_pred -----------CCCCHHHHHHHHHHHHh-CHHHHH
Q 011779 416 -----------GKEGITPLAKNIVKLAT-HVERRL 438 (477)
Q Consensus 416 -----------~d~~~~~la~~i~~ll~-~~~~~~ 438 (477)
+.-+.++++++|.+++. +++.++
T Consensus 412 ~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~ 446 (481)
T PLN02554 412 YWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRK 446 (481)
T ss_pred cccccccccccCeEcHHHHHHHHHHHhcCCHHHHH
Confidence 11237899999999996 554443
|
|
| >PLN02992 coniferyl-alcohol glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.17 Score=50.56 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=53.2
Q ss_pred cEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC
Q 011779 340 RVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~ 416 (477)
++.+.+|..+ ..+++...+ || + .+--++++||+.+|+|+|+.|. ..|.......+ +.-+.|...+..
T Consensus 339 g~vv~~W~PQ-~~iL~h~~vg~Fi--t----H~G~nS~~Eal~~GVP~l~~P~---~~DQ~~na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 339 GFVVPSWAPQ-AEILAHQAVGGFL--T----HCGWSSTLESVVGGVPMIAWPL---FAEQNMNAALLSDELGIAVRSDDP 408 (481)
T ss_pred CEEEeecCCH-HHHhCCcccCeeE--e----cCchhHHHHHHHcCCCEEecCc---cchhHHHHHHHHHHhCeeEEecCC
Confidence 5777787543 457777776 55 2 3334689999999999993211 22333333344 233456655431
Q ss_pred --CCCHHHHHHHHHHHHhCH
Q 011779 417 --KEGITPLAKNIVKLATHV 434 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~ 434 (477)
..+.+++++++.+++.++
T Consensus 409 ~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred CCcccHHHHHHHHHHHhcCC
Confidence 123799999999999763
|
|
| >PLN02152 indole-3-acetate beta-glucosyltransferase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.22 Score=49.60 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=52.4
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecC-
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPV- 415 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~- 415 (477)
.++..+.++..+ .++++..++-.+-+. +-.++++||+.+|+|+|+.|. ..|.......+.+. +.|+-+..
T Consensus 326 ~~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~---~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 326 EEVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPM---WSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred cCCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEeccc---cccchHHHHHHHHHhCceEEeecC
Confidence 356677787643 457888776333332 334689999999999993211 22333333333331 23444321
Q ss_pred -CC-CCHHHHHHHHHHHHhCH
Q 011779 416 -GK-EGITPLAKNIVKLATHV 434 (477)
Q Consensus 416 -~d-~~~~~la~~i~~ll~~~ 434 (477)
.+ .+.+++++++.+++.++
T Consensus 398 ~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCCcCcHHHHHHHHHHHHhhh
Confidence 11 13789999999999754
|
|
| >PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=43.36 Aligned_cols=37 Identities=11% Similarity=0.138 Sum_probs=25.7
Q ss_pred cccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhh
Q 011779 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 244 (477)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~ 244 (477)
..++..++.+...++.+-..+. +||.||+-|||++.+
T Consensus 134 ~~~D~~isPT~wQ~~~fP~~~r-------~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 134 EQADAGISPTRWQRSQFPAEFR-------SKISVIHDGIDTDRF 170 (171)
T ss_pred HhCCcCcCCCHHHHHhCCHHHH-------cCcEEeecccchhhc
Confidence 4566666666666665544322 689999999998864
|
This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important. |
| >PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.23 Score=45.93 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
.++..|++...+... .....+++.+..+.+ ..|+.+++|-=-......... ....+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 445556666665554 244566666666655 557888876543210000011 22222211245
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+.+.....++.+++..||.++.-+ +.+-+||+.+|+||+
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi 222 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVI 222 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceE
Confidence 666666678999999999887554 368999999999999
|
Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport |
| >PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.2 Score=41.52 Aligned_cols=129 Identities=13% Similarity=0.080 Sum_probs=69.9
Q ss_pred cEEEEEeccCCCCchhhHHH-HHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcE
Q 011779 75 KLVLLVSHELSLSGGPLLLM-ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~-~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~Di 153 (477)
|+|+++.+++ ||..+... .|+..+ .|+++++|-.... + .++..|..+. ..+.+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~--------w--~WRmRg~AL~---~a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARK--------W--HWRMRGAALY---FAQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCc--------c--ccccCCCHHH---HhhccccccCCCE
Confidence 7899999887 56555433 444444 4889999854322 1 1122222221 1134445667899
Q ss_pred EEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch---------hhHhh--cccccccceeeehhhHHHHHHHhH
Q 011779 154 IVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVK--HLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
|++.+.....-+..+.. .. ..++.+.+.|+..-.|-. ..+.. ..-.+|.++-+|..-.+.+-+.+.
T Consensus 63 l~aTsmldLa~l~gL~p-~l--~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DL--ANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CC--CCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99998544433333332 22 125677889985433211 11111 113567777777777766665544
Q ss_pred hh
Q 011779 223 ER 224 (477)
Q Consensus 223 ~~ 224 (477)
..
T Consensus 140 ~f 141 (168)
T PF12038_consen 140 SF 141 (168)
T ss_pred HH
Confidence 33
|
It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important. |
| >TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.3 Score=46.79 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=67.7
Q ss_pred HHHHHhhCCCC-CCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH
Q 011779 258 EHVRESLGVRN-EDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 333 (477)
Q Consensus 258 ~~~r~~~~~~~-~~~~il~vGr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~ 333 (477)
+.+...++++. ++++++..|. ..+.|... ...+.++.+.+ .+.++++.|+. ..++..++..+
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~-----~e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSA-----KDHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEECh-----hhHHHHHHHHH
Confidence 44556667654 4566666665 34667654 56666666543 35788899875 33444444444
Q ss_pred hcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 334 ~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
..+ ...+.+.|.. .++..+++.||++|-+-. . .+==|.|.|+|+|+.
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-----G--p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-----G--LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-----H--HHHHHHHcCCCEEEE
Confidence 332 1223366753 789999999999996543 2 344588999999944
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.21 Score=46.35 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=60.4
Q ss_pred eEEEEEeecccCCC--HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 271 LLFAIINSVSRGKG--QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 271 ~~il~vGrl~~~Kg--~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
.+++..|.-.+.|. .+...+.++.+.+ .+++++++|+. +..+..+++.+..+-...+.+.|..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~ 188 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTS 188 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCC
Confidence 34444444444454 4566676666654 37889999875 3444455555444222334556653
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.++..+++.||++|-+-. |. +--|.+.|+|+|+.
T Consensus 189 l~e~~~li~~~~l~I~~Ds------g~-~HlA~a~~~p~i~l 223 (279)
T cd03789 189 LRELAALLARADLVVTNDS------GP-MHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHHHHHhCCEEEeeCC------HH-HHHHHHcCCCEEEE
Confidence 788999999999996543 33 44457999999943
|
Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. |
| >PLN02207 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.81 Score=45.75 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=48.7
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeec-
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHP- 414 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~- 414 (477)
+++.+.+|..+ .++++...+ || + .+--++++||+.+|+|+|+- |. ..+.......+.+ -+.|+-+.
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~Fv--T----H~GwnS~~Eai~~GVP~l~~--P~-~~DQ~~Na~~~~~~~gvGv~~~~ 401 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFV--S----HCGWNSIVESLWFGVPIVTW--PM-YAEQQLNAFLMVKELKLAVELKL 401 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceee--e----cCccccHHHHHHcCCCEEec--Cc-cccchhhHHHHHHHhCceEEEec
Confidence 56666777533 346666555 55 3 22236899999999999932 11 2233333333322 33454221
Q ss_pred -----CCC-CCHHHHHHHHHHHHh
Q 011779 415 -----VGK-EGITPLAKNIVKLAT 432 (477)
Q Consensus 415 -----~~d-~~~~~la~~i~~ll~ 432 (477)
..+ .+.+++.++|.+++.
T Consensus 402 ~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 402 DYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccccccCCcccHHHHHHHHHHHHh
Confidence 011 127899999999996
|
|
| >TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.84 Score=43.32 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
+++++++..|.-.+.|.. +...+.++.+.+ .+.++++.|+++ .+++..++..+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 355666677755567765 356666666543 357788875542 23344445444332 235567
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+-. . .+==|.|.|+|+|+.
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS-----g--p~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT-----G--LTHLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC-----h--HHHHHHHcCCCEEEE
Confidence 53 778889999999996543 2 344477899999943
|
This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. |
| >PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.2 Score=42.34 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=58.5
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.++++++..|.-...|... ...+.+..+.+ .+.++++.|+++ .+.+..++..+.. .++.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 3455544445434556543 45666665533 356777763341 2333344443322 3466777
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.. .++..+++.||++|-+-. ..+-=|-|+|+|+|+.
T Consensus 241 ~~sL~elaali~~a~l~I~nDS-------Gp~HlA~A~g~p~val 278 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT-------GLSHLTAALDRPNITL 278 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------cHHHHHHHhCCCEEEE
Confidence 53 788999999999996543 2355589999999943
|
|
| >PLN00164 glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.9 Score=43.39 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=55.9
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG--- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~--- 416 (477)
+.+.++.. -..+++..++-.+-+ .+--++++||+++|+|+|+-+. ..|..-....+ +.-+.|+.+...
T Consensus 341 ~~v~~w~P-Q~~iL~h~~vg~fvt----H~GwnS~~Eai~~GVP~l~~P~---~~DQ~~Na~~~~~~~gvG~~~~~~~~~ 412 (480)
T PLN00164 341 LVWPTWAP-QKEILAHAAVGGFVT----HCGWNSVLESLWHGVPMAPWPL---YAEQHLNAFELVADMGVAVAMKVDRKR 412 (480)
T ss_pred eEEeecCC-HHHHhcCcccCeEEe----ecccchHHHHHHcCCCEEeCCc---cccchhHHHHHHHHhCeEEEecccccc
Confidence 55557643 346777777522223 2223689999999999993211 22333333333 223456655321
Q ss_pred --CCCHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Q 011779 417 --KEGITPLAKNIVKLATHVE-RRLTMGKRGYE 446 (477)
Q Consensus 417 --d~~~~~la~~i~~ll~~~~-~~~~~~~~a~~ 446 (477)
..+.++++++|.+++.+++ ..+++.+++++
T Consensus 413 ~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 413 DNFVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0137999999999997643 24455555444
|
|
| >PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.56 Score=42.58 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCCCeEEEEEeecccCCCHHH--HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH--HHHHHHHHHhcCCCCcEE
Q 011779 267 RNEDLLFAIINSVSRGKGQDL--FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF--ESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 267 ~~~~~~il~vGrl~~~Kg~~~--ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~--~~~l~~~~~~~~l~~~v~ 342 (477)
.+++++++..|.-.+.|.... ..+.+..+ .+ ....++++|+. .. .+..+...+...- ..+.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l----~~-----~~~~vvl~g~~-----~~~~~~~~~~~~~~~~~-~~~~ 167 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERL----KE-----RGYRVVLLGGP-----EEQEKEIADQIAAGLQN-PVIN 167 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHH----CC-----CT-EEEE--SS-----HHHHHHHHHHHHTTHTT-TTEE
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHH----Hh-----hCceEEEEccc-----hHHHHHHHHHHHHhccc-ceEe
Confidence 355677777777667777644 44444444 32 23788899987 33 3333344443321 2577
Q ss_pred Ecccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 343 ~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+.|.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+
T Consensus 168 ~~~~~~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~ 207 (247)
T PF01075_consen 168 LAGKTSLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVA 207 (247)
T ss_dssp ETTTS-HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEE
T ss_pred ecCCCCHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEE
Confidence 77763 778899999999996543 235558999999993
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A. |
| >PLN02534 UDP-glycosyltransferase | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.2 Score=43.06 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=31.1
Q ss_pred CcEEEccccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 339 ~~v~~~g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.++.+.|+..+ ..+++..++ || ..+-.++++||+++|+|+|+
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fv------tH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFL------THCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEE------ecCccHHHHHHHHcCCCEEe
Confidence 46777787644 567888887 55 33345799999999999993
|
|
| >PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.2 Score=42.92 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=65.8
Q ss_pred HHHHhhCCC-CCCeEEEEEeec-ccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 259 HVRESLGVR-NEDLLFAIINSV-SRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 259 ~~r~~~~~~-~~~~~il~vGrl-~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
.+...+++. +++++++..|.- .+.|.. +.+.+.++.+.+ .++++++.|+. .+++..++..+.
T Consensus 169 ~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~-----~e~~~~~~i~~~ 234 (348)
T PRK10916 169 ETCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSA-----KDHEAGNEILAA 234 (348)
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCH-----HhHHHHHHHHHh
Confidence 344555543 345666666653 356654 345555555533 46788888875 344444554444
Q ss_pred cCCC--Cc-EEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 335 KKIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 335 ~~l~--~~-v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
.+-+ .+ +.+.|.. .++..+++.||++|-+-. - .+==|.|.|+|+|+.
T Consensus 235 ~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-----G--p~HlAaA~g~P~val 286 (348)
T PRK10916 235 LNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-----G--LMHVAAALNRPLVAL 286 (348)
T ss_pred cccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-----h--HHHHHHHhCCCEEEE
Confidence 3211 12 4556653 788899999999996543 2 344588999999944
|
|
| >PRK10422 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.73 Score=44.47 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=61.9
Q ss_pred CCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 269 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++++++..|.-.+.|... ...+.++.+.+ .+.+++++|+..+ ...+..++..+.......+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e---~e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA---------RGYEVVLTSGPDK---DDLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEcCCCh---HHHHHHHHHHHhcCCCccccccCC
Confidence 467777777766777654 55565555533 4678888876421 112223444433322233556675
Q ss_pred c--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 347 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 347 ~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
. .++..+++.||++|-+-. . .+-=|.|.|+|+|+
T Consensus 251 ~sL~el~ali~~a~l~v~nDS-----G--p~HlAaA~g~P~v~ 286 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS-----A--PAHIAAAVNTPLIC 286 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC-----H--HHHHHHHcCCCEEE
Confidence 3 889999999999996543 2 34447899999993
|
|
| >KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.4 Score=44.70 Aligned_cols=146 Identities=9% Similarity=0.012 Sum_probs=76.0
Q ss_pred CCeEEEEEeeccc-----CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcC--CCCcE
Q 011779 269 EDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK--IQDRV 341 (477)
Q Consensus 269 ~~~~il~vGrl~~-----~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~v 341 (477)
+..+++..|.... .+-...+..++..+ +++.|++.=.+.. ... ..+... -.++|
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~-----------~~~~FiW~~~~~~-----~~~---~~~~~~~~~~~nV 337 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESL-----------QGVTFLWKYRPDD-----SIY---FPEGLPNRGRGNV 337 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhC-----------CCceEEEEecCCc-----chh---hhhcCCCCCcCce
Confidence 3566667787753 33334444454432 5677666555421 111 122111 13478
Q ss_pred EEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 342 HFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 342 ~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
.+.+|..+..-+++. ..+|| + .-|++ +++||+.+|+|+|+.|. -.|..-....+.+...|.+....|..
T Consensus 338 ~~~~W~PQ~~lll~H~~v~~Fv--T---HgG~n-St~E~~~~GvP~v~~Pl---f~DQ~~Na~~i~~~g~~~v~~~~~~~ 408 (496)
T KOG1192|consen 338 VLSKWAPQNDLLLDHPAVGGFV--T---HGGWN-STLESIYSGVPMVCVPL---FGDQPLNARLLVRHGGGGVLDKRDLV 408 (496)
T ss_pred EEecCCCcHHHhcCCCcCcEEE--E---CCccc-HHHHHHhcCCceecCCc---cccchhHHHHHHhCCCEEEEehhhcC
Confidence 888886554433322 23444 3 23443 55999999999993211 22333344444433334444433322
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Q 011779 420 ITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
.+.+.+++..++.+++..+...+
T Consensus 409 ~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 409 SEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cHHHHHHHHHHHcChHHHHHHHH
Confidence 34488888888888775554433
|
|
| >PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis | Back alignment and domain information |
|---|
Probab=92.57 E-value=4.5 Score=36.96 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.8
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
..++..+++.+|++|-... -..+=|+++|+|+|
T Consensus 248 ~~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i 280 (286)
T PF04230_consen 248 PDELLELISQADLVISMRL-------HGAILALSLGVPVI 280 (286)
T ss_pred HHHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEE
Confidence 3788899999999997765 25677999999999
|
CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ]. |
| >TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.2 Score=40.98 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=61.1
Q ss_pred CCCeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcc
Q 011779 268 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g 345 (477)
.+.++++..|.-.+.|.. +...+.++.+.+ .+..++++|+..+ ...+..++..+..+-+..+.+.|
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~---------~~~~ivl~g~p~~---~e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHA---------RGYEVVLTSGPDK---DELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHh---------CCCeEEEecCCCH---HHHHHHHHHHhhCCCCcccccCC
Confidence 345666666665566654 445555555533 3578888886421 12223344433333222345677
Q ss_pred cc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 346 ~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+
T Consensus 248 ~~sL~el~ali~~a~l~Vs~DS-------Gp~HlAaA~g~p~v~ 284 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVDS-------VPMHMAAALGTPLVA 284 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEE
Confidence 53 789999999999996543 235558999999994
|
This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II. |
| >COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.88 E-value=13 Score=35.91 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce
Q 011779 324 FESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT 401 (477)
Q Consensus 324 ~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~ 401 (477)
+..-.+.++....-..++.+.... +++...++++|+.|-.-. -.++=||+.|+|+|+..|-. ..-++.
T Consensus 251 d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~Y~~---K~~~l~ 320 (385)
T COG2327 251 DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIAYDP---KVRGLM 320 (385)
T ss_pred hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEeecH---HHHHHH
Confidence 344444444444333677666542 456778999998885443 35777999999999321111 111232
Q ss_pred EEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHH
Q 011779 402 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLT 439 (477)
Q Consensus 402 e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~ 439 (477)
+-+ |..++..+..+.+.+.+.++..+.+. +++.+++
T Consensus 321 ~~~--gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 321 QDL--GLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred HHc--CCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 222 44556666666568888888888777 4554444
|
|
| >PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [] | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.57 Score=39.78 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=51.9
Q ss_pred hhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeec---ccccchhhHhhcccccccceeeehhhHHHHH
Q 011779 143 ETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEM---RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (477)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (477)
..+.++.+||+|++..+.+... +..+...+... .++++..+.++ +..|.. +..|..++.+....+.+.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~-~~p~~tvvTD~~~~H~~W~~-------~~~D~y~Vase~~~~~l~ 153 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLP-NIPVVTVVTDFDTVHPFWIH-------PGVDRYFVASEEVKEELI 153 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHHHHHHhhccc-CCcEEEEEcCCCCCCcCeec-------CCCCEEEECCHHHHHHHH
Confidence 3555679999999999887666 55444443221 13443333332 222222 567888888888777766
Q ss_pred HHhHhhhccCCCCeEEEecC
Q 011779 219 NRTRERLRIKMPDTYVVHLG 238 (477)
Q Consensus 219 ~~~~~~~~~~~~~i~vi~ng 238 (477)
..|++.+++.+..-+
T Consensus 154 -----~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 154 -----ERGIPPERIHVTGIP 168 (169)
T ss_pred -----HcCCChhHEEEeCcc
Confidence 368999988886543
|
; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process |
| >PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.95 Score=32.99 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=34.5
Q ss_pred cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc
Q 011779 140 KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG 189 (477)
Q Consensus 140 ~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 189 (477)
+..+.+...++.||||.|+..+.......+..+. .+.+.+++-|...+
T Consensus 40 pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~--mGlktVfTDHSLfg 87 (90)
T PF08288_consen 40 PLLRNILIRERIDIVHGHQAFSTLCHEAILHART--MGLKTVFTDHSLFG 87 (90)
T ss_pred HHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHh--CCCcEEeecccccc
Confidence 3346777789999999999777766665555544 44678888887644
|
These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process |
| >PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides | Back alignment and domain information |
|---|
Probab=89.31 E-value=5.3 Score=34.45 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=62.4
Q ss_pred chhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhh-hcCcEEEeccc---hhhHHHhcCCcEEEEcCc-c
Q 011779 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAKG---QETINTALKADLIVLNTA-V 160 (477)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~---~~~~~~~~~~DiV~~~~~-~ 160 (477)
|--..+..|++.|.++ |+.|.+-+........ ....+. ...+...|+.. .+.+.+..+||+++.... .
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~-----~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtEl 106 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREM-----ARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETEL 106 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHH-----HHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES---
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHH-----HHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEcccc
Confidence 4447899999999987 7777766644332111 111111 11223334332 367778889999987653 2
Q ss_pred hhhHHHHHhhhCCCccccceeeeeeec-ccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEec
Q 011779 161 AGKWLDAVLKEDVPRVLPNVLWWIHEM-RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 237 (477)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~h~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~n 237 (477)
-...+..+.+.++|.....--..-... ....+.......+..++.+.+.+....+.+. .+|.+.+++.+..|
T Consensus 107 WPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 107 WPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHVTGN 179 (186)
T ss_dssp -HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE---
T ss_pred CHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEEeCc
Confidence 223344444444442211100000000 0112333455667888999999988888776 67888889999876
|
Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B. |
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.78 Score=34.78 Aligned_cols=71 Identities=10% Similarity=0.202 Sum_probs=46.9
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE---cccc-C--CHHHHHHhcCEEEEcCCCC-CCcccHHHHHHHHcCC
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF---VNKT-L--TVAPYLAAIDVLVQNSQAW-GECFGRITIEAMAFQL 383 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~---~g~~-~--~l~~~~~~aDv~v~pS~~~-~E~~g~~~lEAma~G~ 383 (477)
++|+|+-. .....+++.++++|.. .+.+ -|.. . .++..+..+|++|++...- ....-.+--+|-..|+
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~-~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK-LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGI 76 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE-EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCC
Confidence 57788732 4678889999998864 3344 1222 3 3888899999999887621 1112234566788899
Q ss_pred CEE
Q 011779 384 PVL 386 (477)
Q Consensus 384 PvI 386 (477)
|++
T Consensus 77 p~~ 79 (97)
T PF10087_consen 77 PII 79 (97)
T ss_pred cEE
Confidence 999
|
|
| >PRK09739 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.4 Score=38.58 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=31.9
Q ss_pred CCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecC
Q 011779 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
|+||||+++..+...+|.. ..+..+++.+.+.|++|.++-..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 5678999998766555544 56777888899999999988743
|
|
| >PLN03015 UDP-glucosyl transferase | Back alignment and domain information |
|---|
Probab=88.18 E-value=9.1 Score=38.34 Aligned_cols=84 Identities=10% Similarity=-0.007 Sum_probs=45.0
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeec----C
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHP----V 415 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~----~ 415 (477)
+.+.+|..+ .++++...+-.+-+ .+--++++||+++|+|+|+-|. ..|..-....+ +.-..|.-+. .
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvt----H~GwnS~~Eai~~GvP~v~~P~---~~DQ~~na~~~~~~~gvg~~~~~~~~~ 408 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLS----HCGWSSVLESLTKGVPIVAWPL---YAEQWMNATLLTEEIGVAVRTSELPSE 408 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEe----cCCchhHHHHHHcCCCEEeccc---ccchHHHHHHHHHHhCeeEEecccccC
Confidence 455676533 34566655522223 2233689999999999993211 12222222222 1223343332 1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 011779 416 GKEGITPLAKNIVKLAT 432 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~ 432 (477)
+....+++++++++++.
T Consensus 409 ~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 409 KVIGREEVASLVRKIVA 425 (470)
T ss_pred CccCHHHHHHHHHHHHc
Confidence 11127899999999995
|
|
| >PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.7 Score=35.23 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch
Q 011779 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (477)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~ 142 (477)
.=+..++++|+++||||.+.+... +.......|+...++...
T Consensus 13 ~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 13 YPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESSSC
T ss_pred HHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEecCC
Confidence 457899999999999999888543 345557778888776543
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B .... |
| >PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.2 Score=36.19 Aligned_cols=81 Identities=21% Similarity=0.173 Sum_probs=46.3
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhH-HHhcCC
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETI-NTALKA 151 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~ 151 (477)
+..+|++++..-+.|| --.-+++.|.++|++|.|+...+..............+...|+++......... .....+
T Consensus 24 ~~~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 100 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPA 100 (169)
T ss_dssp TT-EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCE
T ss_pred CCCeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccc
Confidence 3457888886655554 567789999999999999664443332222223344556677777654433222 122356
Q ss_pred cEEEE
Q 011779 152 DLIVL 156 (477)
Q Consensus 152 DiV~~ 156 (477)
|+|+=
T Consensus 101 dlIID 105 (169)
T PF03853_consen 101 DLIID 105 (169)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 66653
|
In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A .... |
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=86.09 E-value=2.8 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.8
Q ss_pred EEEEEeccCCCCch-------hhHHHHHHHHHHhCC-cEEEEEec
Q 011779 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-TKVNWITI 112 (477)
Q Consensus 76 ~Il~v~~~~~~gG~-------~~~~~~l~~~L~~~G-~~V~v~~~ 112 (477)
||+++.|.+..+|. +.-+..++..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 58888887665553 234678888999999 89999853
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.38 E-value=9.6 Score=38.24 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=61.2
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
....+.++.+..++.|.- .+...-.+.||+.+|| |||+++.. .-. ..+.+.-.+.++.++..+ +..+
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~--~lp---f~~~~d~~~fSV~v~~~~--v~~~--- 402 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGI--QLP---FGDVLDWTEFSVFVPEKD--VPEL--- 402 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCc--ccC---cCCCccceEEEEEEEHHH--hhhH---
Confidence 567888999999999998 7777779999999997 88844331 222 234443345667776333 5555
Q ss_pred HHHHHh--CHHHHHHHHHHHHHHHHHhcCHH
Q 011779 427 IVKLAT--HVERRLTMGKRGYERVKEIFQEH 455 (477)
Q Consensus 427 i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~ 455 (477)
|.+.+. ..+....|.++....+...|-+.
T Consensus 403 ~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~ 433 (464)
T KOG1021|consen 403 IKNILLSIPEEEVLRMRENVIRLVPRHFLKK 433 (464)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhEEeC
Confidence 333333 34445666666665555555444
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=84.11 E-value=40 Score=32.13 Aligned_cols=136 Identities=13% Similarity=0.162 Sum_probs=77.8
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc------CCHH----HHHHhcCEEEEcCCCCCCcccHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVA----PYLAAIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~----~~~~~aDv~v~pS~~~~E~~g~~~l 376 (477)
.+-+++++|.| +.....-+...+.|. .+|.+.... +++. .+...+|+++..|....-+.|....
T Consensus 173 ~~k~vLvIGaG-----em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYS-----EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEccc-----HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 56799999999 666666666666776 467776653 2232 5567899999863211344566666
Q ss_pred HHHHcCCC-EEeeccccccccCCCceEE--eecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 377 EAMAFQLP-VLLQKCLYQGTAAGGTTEI--VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 377 EAma~G~P-vI~~~~~~~~~~~gg~~e~--v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
|.+.. .+ -+ .-|..-++++ +....+-.+++ ++++.+.+.+- ...|++....+...+
T Consensus 247 ~~~~~-~~~r~-------~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~n---~~~R~~~~~~ae~iI----- 305 (338)
T PRK00676 247 ESLAD-IPDRI-------VFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQKH---LQCRKEVNNKHKLSL----- 305 (338)
T ss_pred HHHhh-ccCcE-------EEEecCCCCCccccccCCcEEEE-----hHHHHHHHHHH---HHHHHHHHHHHHHHH-----
Confidence 65543 32 23 2344444443 22233344554 66666666543 334455444454444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011779 454 EHHMAERIAVVLKEVLK 470 (477)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (477)
+..+.++.+.|++-.+
T Consensus 306 -~~~~~~~~~~~~~~~~ 321 (338)
T PRK00676 306 -REAAYKQWESYEKKLS 321 (338)
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 3567777777776544
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=83.04 E-value=4.7 Score=32.10 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLV 95 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEE
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEE
Confidence 678999999999998887 6766666777889999999
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=5.4 Score=37.66 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=46.4
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh-HHhhhhhhhhhcCcEEEeccch-----hhHHH
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE-VIYSLEHKMWDRGVQVISAKGQ-----ETINT 147 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ 147 (477)
||||+|+... .+.....+.|.+.|++|..+....+..... ....+.......|++++..... ....+
T Consensus 2 ~mkIvf~Gs~-------~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAYH-------NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeCc-------HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 4788888632 355666677777899987665443222111 1123455566778888653221 23456
Q ss_pred hcCCcEEEEcC
Q 011779 148 ALKADLIVLNT 158 (477)
Q Consensus 148 ~~~~DiV~~~~ 158 (477)
..+||++++-.
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 68999998753
|
|
| >KOG3349 consensus Predicted glycosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.11 E-value=20 Score=29.41 Aligned_cols=96 Identities=13% Similarity=0.199 Sum_probs=56.2
Q ss_pred CeEEEEEeecccCCCHHHHHHHH--HHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEcc-
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSF--YESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVN- 345 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~--~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g- 345 (477)
.-+++.+|.-. .|.|+.+. ....+.+++. .=.+|+| +|.|... ..+......+. +.+...|
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~----G~~kLiiQ~Grg~~~---~~d~~~~~~k~----~gl~id~y 68 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKR----GFTKLIIQIGRGQPF---FGDPIDLIRKN----GGLTIDGY 68 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHc----CccEEEEEecCCccC---CCCHHHhhccc----CCeEEEEE
Confidence 34677778632 77777765 2344444442 2234444 6776211 11112222222 2344444
Q ss_pred -ccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 346 -KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 346 -~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+...+.++++.||+++. .+-.-+++|-+..|+|.|
T Consensus 69 ~f~psl~e~I~~AdlVIs------HAGaGS~letL~l~KPli 104 (170)
T KOG3349|consen 69 DFSPSLTEDIRSADLVIS------HAGAGSCLETLRLGKPLI 104 (170)
T ss_pred ecCccHHHHHhhccEEEe------cCCcchHHHHHHcCCCEE
Confidence 45889999999999993 223358999999999998
|
|
| >PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.1 Score=41.95 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=44.9
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeeccccccccCC--CceEEeecCCceeeecCCCCCHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQGTAAG--GTTEIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~~~~g--g~~e~v~~~~~G~l~~~~d~~~~~la 424 (477)
.+..+.|+.+..++.|.- ...+..-++|||++|| ||| .++.- ...+++.-....+.++..+ +.++-
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVi-------i~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~ 296 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVI-------ISDDYVLPFEDVLDWSRFSVRVPEAD--LPELP 296 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEE-------ecCcccCCcccccCHHHEEEEECHHH--HHHHH
Confidence 457788999999999875 4447788999999997 777 33321 2245554445566666544 44444
Q ss_pred HHH
Q 011779 425 KNI 427 (477)
Q Consensus 425 ~~i 427 (477)
+.|
T Consensus 297 ~iL 299 (302)
T PF03016_consen 297 EIL 299 (302)
T ss_pred HHH
Confidence 443
|
Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane |
| >PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=81.69 E-value=9.2 Score=33.42 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=45.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc--ch-------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~--~~------- 142 (477)
||||++++.. ....+..+.+++.+.+ ++|.++.+..+.. .........|++++... ..
T Consensus 1 m~ki~vl~sg-----~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~ 69 (200)
T PRK05647 1 MKRIVVLASG-----NGSNLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFD 69 (200)
T ss_pred CceEEEEEcC-----CChhHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhH
Confidence 4788888843 3356778888888765 6676654443321 12444567788876522 11
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++..
T Consensus 70 ~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 70 AALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHHhCcCEEEhHH
Confidence 2334567999998853
|
|
| >cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E | Back alignment and domain information |
|---|
Probab=81.63 E-value=15 Score=32.40 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=50.7
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhc-CCCCcEEEccccCCHHHHHHhcCEEEEcCCC-------CCC-cccHHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 377 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~-------~~E-~~g~~~lE 377 (477)
.+.++.++...+....++...+.+..+++ |....+...-..++..+.+..||++++|--. +.+ ++.-.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 45688888876654456777777778888 7632222211235678889999999998531 011 22223455
Q ss_pred HHHcCCCEE
Q 011779 378 AMAFQLPVL 386 (477)
Q Consensus 378 Ama~G~PvI 386 (477)
+...|+|++
T Consensus 110 ~~~~g~~i~ 118 (212)
T cd03146 110 ALERGVVYI 118 (212)
T ss_pred HHHCCCEEE
Confidence 666899999
|
Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 477 | ||||
| 2jjm_A | 394 | Crystal Structure Of A Family Gt4 Glycosyltransfera | 9e-09 | ||
| 3mbo_A | 414 | Crystal Structure Of The Glycosyltransferase Babsha | 1e-08 |
| >pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From Bacillus Anthracis Orf Ba1558. Length = 394 | Back alignment and structure |
|
| >pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate Length = 414 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 79/439 (17%), Positives = 150/439 (34%), Gaps = 63/439 (14%)
Query: 51 KKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110
K + + V +I K+ L + V+ G +L L LLR +G + W
Sbjct: 20 KSIIGEEEVSKIQEKAEKLKGRS---FVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWF 76
Query: 111 TIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL----------KADLIVLNTAV 160
I+ P+E V + + + ++ + +E D ++++
Sbjct: 77 VIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQ 136
Query: 161 AGKWLDAVLKEDVPRVLPNVLWWIHEM--RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218
L ++ P + W H + ++++ I H+
Sbjct: 137 PA-ALIEFYEKKSPWL-----WRCHIDLSSPNREFWEFLRRFVEKYDRYI-FHLPEYVQP 189
Query: 219 NRTRERLRIKMPDTYVVHLG---NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275
R + ++ S++ +E+ + + + + E V E +
Sbjct: 190 ELDRNKAV-------IMPPSIDPLSEKNVELKQTEILR------ILERFDVDPEKPIITQ 236
Query: 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS----DMNAQTKFESELRNY 331
++ KG + + + E ++P V +++G D FE LR
Sbjct: 237 VSRFDPWKGIFDVIEIYRKVKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKI 289
Query: 332 VMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKC 390
++ + + V + A DV++Q S E FG EAM PV+
Sbjct: 290 GEDYDVKVLTNLIGVHAREVNAFQRASDVILQMS--IREGFGLTVTEAMWKGKPVI---- 343
Query: 391 LYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 450
G A GG +V+G TG L E + ++ L H E MG + ERV++
Sbjct: 344 ---GRAVGGIKFQIVDGETGFLVRDANE----AVEVVLYLLKHPEVSKEMGAKAKERVRK 396
Query: 451 IFQEHHMAERIAVVLKEVL 469
F ER +L +
Sbjct: 397 NFIITKHMERYLDILNSLG 415
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 61/329 (18%), Positives = 124/329 (37%), Gaps = 40/329 (12%)
Query: 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL----WWIHEMRGHYFKLDYVKHLPLVAG 205
D++ ++ A+ + K+ + + V I + + ++ +
Sbjct: 99 NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSD 158
Query: 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265
+ + N T E ++ D V+ + + + +++ G
Sbjct: 159 VVT---AVSHSLINETHELVKPN-KDIQTVYNFIDERVYFKRD--------MTQLKKEYG 206
Query: 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFE 325
+ + + I++ + K + +F + + + +++G
Sbjct: 207 ISESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD--------AKLLLVGD-----GPEF 253
Query: 326 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385
+ V I+DRV F+ K VA LA D+++ S E FG + +EAMA +P
Sbjct: 254 CTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLS--EKESFGLVLLEAMACGVPC 311
Query: 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 445
+ GT GG E++ +G TG L VG T +A ++L E MG+R
Sbjct: 312 I-------GTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERAR 362
Query: 446 ERVKEIFQEHHMAERIAVVLKEVLKKSKS 474
E V E F+ + + + +VL+ K+
Sbjct: 363 ESVYEQFRSEKIVSQYETIYYDVLRDDKN 391
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 23/213 (10%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE R+ G++ + L + S KG D + + E + + +
Sbjct: 183 REIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPE-------SLRHNTLLFVVG 235
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376
+ + + ++ VHF + V+ +AA D+L+ + + E G + +
Sbjct: 236 QDKPR-----KFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPA--YQEAAGIVLL 288
Query: 377 EAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436
EA+ LPVL TA G + + G + L + + K T
Sbjct: 289 EAITAGLPVL-------TTAVCGYAHYIADANCGTVIAEPFS-QEQLNEVLRKALTQSPL 340
Query: 437 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469
R+ + + + E+ A ++ L
Sbjct: 341 RMAWAENARHYADT-QDLYSLPEKAADIITGGL 372
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 56/270 (20%), Positives = 100/270 (37%), Gaps = 39/270 (14%)
Query: 211 HVTA--EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268
+T +Y R + P + G ++V A + R+ LG +
Sbjct: 143 VLTYISQYTLRRFKSAFGSH-PTFEHLPSG-----VDVKRFTPATPEDKSATRKKLGFTD 196
Query: 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 328
+ A + + KGQD + +++ + P +I+GS ++ES L
Sbjct: 197 TTPVIACNSRLVPRKGQDSLI----KAMPQVIA---ARPDAQLLIVGSG-----RYESTL 244
Query: 329 RNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLV-----QNSQAWGECFGRITIEAMAF 381
R + V F+ + + LAA D+ + E G + +EA A
Sbjct: 245 RRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQAC 302
Query: 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441
+PV+ +GG E V T GL+ L++ +++L RR MG
Sbjct: 303 GVPVI-------AGTSGGAPETVTPAT-GLVVEGSDVD--KLSELLIELLDDPIRRAAMG 352
Query: 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKK 471
G V+ + M ER+ +L+ +K
Sbjct: 353 AAGRAHVEAEWSWEIMGERLTNILQSEPRK 382
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Length = 166 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 6e-18
Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 26/178 (14%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342
K Q + + + L K K + ++ G E +++ + ++
Sbjct: 15 KNQSVLIKAV----ALSKYK----QDIVLLLKGKG-----PDEKKIKLLAQKLGVKAEFG 61
Query: 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTE 402
FVN + L + V + E +EA++ + ++ + T
Sbjct: 62 FVNSN-ELLEILKTCTLYVHAANV--ESEAIACLEAISVGIVPVI------ANSPLSATR 112
Query: 403 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460
L P L+ I + R M + + + +
Sbjct: 113 QFALDERSLFEP---NNAKDLSAKIDWWLENKLERERMQNEYAKSALN-YTLENSVIQ 166
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 44/226 (19%), Positives = 77/226 (34%), Gaps = 28/226 (12%)
Query: 254 RVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFLHSFYESLELIKEKKLEVPSVH 310
E R LG+ + A V R KG + + + + ++ L V
Sbjct: 227 DRATERSRRELGIPLHTKVVA---FVGRLQPFKGPQVLIKAVAALFDRDPDRNLRV---- 279
Query: 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT---VAPYLAAIDVLVQNSQAW 367
+I G + R+ + ++ R+ F+ + A D++ S +
Sbjct: 280 -IICGGPSGPNATPD-TYRHMAEELGVEKRIRFL-DPRPPSELVAVYRAADIVAVPS--F 334
Query: 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 427
E FG + +EA A PV+ GG V G TGLL A +
Sbjct: 335 NESFGLVAMEAQASGTPVI-------AARVGGLPIAVAEGETGLLVDGHSPH--AWADAL 385
Query: 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473
L E R+ MG+ E + F A +++ + + +
Sbjct: 386 ATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANEN 430
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 2e-16
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 32/236 (13%)
Query: 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 307
E+ + V + L + + +LF + + R K + + ++ L
Sbjct: 551 EELLYSDVENKEHLCVLKDKKKPILFTM-ARLDRVKNLSGLVEWYGKNTRL-------RE 602
Query: 308 SVHAVIIG------SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAP-------YL 354
+ V++G S N + ++ + + + K+ + +++ +
Sbjct: 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYIC 662
Query: 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414
VQ + E FG +EAM LP T GG EI+V+G +G
Sbjct: 663 DTKGAFVQPA--LYEAFGLTVVEAMTCGLPTF-------ATCKGGPAEIIVHGKSGFHID 713
Query: 415 V--GKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468
G + LA K + K G +R++E + ++R+ +
Sbjct: 714 PYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 30/190 (15%)
Query: 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRV 341
KG + L +L + P V +I+G D + + +L +
Sbjct: 222 KGMAVLL----AALPKLVA---RFPDVEILIVGRGDEDELREQAGDLA---------GHL 265
Query: 342 HFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG 399
F+ + T A + + DV GE FG + +EAMA V+ +
Sbjct: 266 RFLGQVDDATKASAMRSADVYCAPHL-GGESFGIVLVEAMAAGTAVV-------ASDLDA 317
Query: 400 TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 459
++ +G G L PV +A ++ + + R R ERV + ++
Sbjct: 318 FRRVLADGDAGRLVPVDDAD--GMAAALIGILEDDQLRAGYVARASERVHR-YDWSVVSA 374
Query: 460 RIAVVLKEVL 469
+I V + V
Sbjct: 375 QIMRVYETVS 384
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Length = 413 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 9e-16
Identities = 50/330 (15%), Positives = 99/330 (30%), Gaps = 37/330 (11%)
Query: 166 DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERL 225
D V+ + P V+ N L + + + YV + + +W + +
Sbjct: 83 DIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVS-------KNIRENLWWIFSHPKVV 135
Query: 226 RI----KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281
+ K + + + G + V+ K + L N+D+LF +N +
Sbjct: 136 GVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNRNTA 195
Query: 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341
K D+++ + + + K+ D+++ E +++
Sbjct: 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKI 255
Query: 342 HFVNKTLT---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG 398
LT V A DV+V S GE FG + E P++ +A G
Sbjct: 256 MINRTVLTDERVDMMYNACDVIVNCS--SGEGFGLCSAEGAVLGKPLI-------ISAVG 306
Query: 399 GTTEIVVNGTTGLLHPVGKEGITPL--------------AKNIVKLATHVERRLTMGKRG 444
G + + P + + R GKR
Sbjct: 307 GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNRKEYGKRV 366
Query: 445 YERVKEIFQEHHMAERIAVVLKEVLKKSKS 474
+ VK ++ I +L+
Sbjct: 367 QDFVKTKPTWDDISSDIIDFFNSLLRVESR 396
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 44/251 (17%), Positives = 90/251 (35%), Gaps = 26/251 (10%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFLH 290
V+ G + + + + K + +++ LG +L I + SR K +
Sbjct: 225 VIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMEL--PAIIASSRLDQKKNHYGLVE 282
Query: 291 SFYESLELIKEKKLEV----PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF--- 343
++ ++ EL + L + + + ++ + + +V
Sbjct: 283 AYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPL 342
Query: 344 VNKTLTVAPY---LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGT 400
++ Y + V S + E FG +EAMA LP + T GG
Sbjct: 343 NSQQELAGCYAYLASKGSVFALTS--FYEPFGLAPVEAMASGLPAV-------VTRNGGP 393
Query: 401 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460
EI+ G G+L +A+ ++K E ++G +RV+E + A
Sbjct: 394 AEILDGGKYGVLVDPEDPE--DIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARG 451
Query: 461 IAVVLKEVLKK 471
V++E+ +
Sbjct: 452 YLEVIQEIADR 462
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Length = 177 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-13
Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 35/188 (18%)
Query: 267 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG--SDMNAQTKF 324
+ + +N + K +L L F + ++++KL I+G S + ++
Sbjct: 20 KCYGDFWLSVNRIYPEKRIELQLEVFKK----LQDEKL-------YIVGWFSKGDHAERY 68
Query: 325 ESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382
++ K D V F+ + + L+ + E FG IEAMA
Sbjct: 69 ARKIM-----KIAPDNVKFLGSVSEEELIDLYSRCKGLLCTA--KDEDFGLTPIEAMASG 121
Query: 383 LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442
PV+ GG E V+N TG L + + K++ + ++ K
Sbjct: 122 KPVI-------AVNEGGFKETVINEKTGYLVNADVNE---IIDAMKKVSKNPDK---FKK 168
Query: 443 RGYERVKE 450
+ R KE
Sbjct: 169 DCFRRAKE 176
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Length = 413 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 9e-12
Identities = 49/406 (12%), Positives = 104/406 (25%), Gaps = 59/406 (14%)
Query: 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRG-- 133
L++ ++ + GG ++L K I ++ K
Sbjct: 51 LLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPKDLQSFKSFKYVMPEED 110
Query: 134 ----VQVISAKGQETINTAL-KADLIVLN---TAVAGKWLDAVLKEDVPRVLPNVLWWIH 185
+Q++ + + K D+ + TA A + + + + +L+ I
Sbjct: 111 KDFALQIVPFNDRYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIPPNKILYIIQ 170
Query: 186 EMRGHYFKLDYVKHLPLVAGAMIDSHVTA--EYWKNRTRERLRIKMPDTYVVHLGNSKEL 243
+ +++ L + + D Y + L
Sbjct: 171 DFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTL 230
Query: 244 MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303
D K + +L SV R L + E+L++ +K
Sbjct: 231 KNYINDKRQKEKI--------------ILVYGRPSVKR-NAFTLIV----EALKIFVQKY 271
Query: 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLV 361
+ +G + ++ + K A L + +
Sbjct: 272 DRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGI 319
Query: 362 QNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGIT 421
+ +E F L V+ + L + E
Sbjct: 320 SLMIS--PHPSYPPLEMAHFGLRVI-------TNKYENKDLSNWHSNIVSLEQLNPEN-- 368
Query: 422 PLAKNIVKLATHVERRLTMGKRGYERVKEI--FQEHHMAERIAVVL 465
+A+ +V+L R K + I F E + I L
Sbjct: 369 -IAETLVELCMSFNNRDVDKKESSNMMFYINEFNEFSFIKEIEEKL 413
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 8e-08
Identities = 68/490 (13%), Positives = 141/490 (28%), Gaps = 151/490 (30%)
Query: 49 SDKKRVQSQSVPRIATKSSPLSFMKSKLVLLVSHE-LSLSGGP------LLLMELAF--L 99
+D + +V R+ P ++ L+ L + + + G + L +
Sbjct: 121 NDNQVFAKYNVSRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 100 LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD------- 152
+ K+ W+ ++ + + V+ L+ K+ + +++ + N L+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 153 -----------LIVLNTAVAGKWL---------------DAVLKEDVPRVLPNVLWWIHE 186
L+VL V + + + + H
Sbjct: 236 RLLKSKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 187 MRGHYFKLDYVKHL--------------------PLV---AGAMI-DSHVTAEYWKNRTR 222
D VK L P I D T + WK+
Sbjct: 295 SMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV----------------RESLGV 266
++L + ++ + L E ++ + V + + V
Sbjct: 353 DKLTTII-ESSLNVL-EPAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 267 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES 326
N+ ++++ + K + + S Y LEL K K ++H I+ N F+S
Sbjct: 408 VNKLHKYSLVE--KQPKESTISIPSIY--LEL-KVKLENEYALHRSIVDHY-NIPKTFDS 461
Query: 327 E------LRNYVMQ------KKIQ--DRVHFVNKTLTVAPYLAAIDV------LVQNSQA 366
+ L Y K I+ +R+ +L D + +S A
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-----FL---DFRFLEQKIRHDSTA 513
Query: 367 WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426
W A L L Q Y+ I N P + + +
Sbjct: 514 WN---------ASGSILNTLQQLKFYKP-------YICDN------DPKYERLVNAILDF 551
Query: 427 IVKLATHVER 436
+ K+ ++
Sbjct: 552 LPKIEENLIC 561
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Length = 342 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 26/141 (18%)
Query: 339 DRVHFVNK--TLTVAPYLAAIDVLV--------QNSQAWGECFGRITIEAMAFQLPVLLQ 388
V + + LA+ ++ W E + EA PV+
Sbjct: 212 STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVV-- 269
Query: 389 KCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448
GT G EIV + + + A L
Sbjct: 270 -----GTGNGCLAEIVPSVGEVVGYGTD---------FAPDEARRTLAGLPASDEVRRAA 315
Query: 449 KEIFQEHHMAERIAVVLKEVL 469
++ +AER + +L
Sbjct: 316 VRLWGHVTIAERYVEQYRRLL 336
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 3fro_A | 439 | GLGA glycogen synthase; glycosyltransferase family | 100.0 | |
| 3c48_A | 438 | Predicted glycosyltransferases; retaining glycosyl | 100.0 | |
| 3okp_A | 394 | GDP-mannose-dependent alpha-(1-6)-phosphatidylino | 100.0 | |
| 2r60_A | 499 | Glycosyl transferase, group 1; rossmann-fold; 1.80 | 100.0 | |
| 2x6q_A | 416 | Trehalose-synthase TRET; biosynthetic protein; 2.2 | 100.0 | |
| 2jjm_A | 394 | Glycosyl transferase, group 1 family protein; anth | 100.0 | |
| 1rzu_A | 485 | Glycogen synthase 1; glycosyl-transferase, GT-B fo | 100.0 | |
| 3oy2_A | 413 | Glycosyltransferase B736L; rossmann fold, GDP-mann | 100.0 | |
| 2qzs_A | 485 | Glycogen synthase; glycosyl-transferase, GT-B fold | 100.0 | |
| 2iw1_A | 374 | Lipopolysaccharide core biosynthesis protein RFAG; | 100.0 | |
| 3vue_A | 536 | GBSS-I, granule-bound starch synthase 1, chloropla | 100.0 | |
| 2gek_A | 406 | Phosphatidylinositol mannosyltransferase (PIMA); G | 100.0 | |
| 3s28_A | 816 | Sucrose synthase 1; glycosyltransferase, sucrose m | 100.0 | |
| 2iuy_A | 342 | Avigt4, glycosyltransferase; antibiotics, family G | 100.0 | |
| 2x0d_A | 413 | WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge | 100.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 100.0 | |
| 1f0k_A | 364 | MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe | 100.0 | |
| 2hy7_A | 406 | Glucuronosyltransferase GUMK; glycosyltransferases | 99.98 | |
| 1vgv_A | 384 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.98 | |
| 3beo_A | 375 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a | 99.98 | |
| 1uqt_A | 482 | Alpha, alpha-trehalose-phosphate synthase; glycosy | 99.98 | |
| 3nb0_A | 725 | Glycogen [starch] synthase isoform 2; glycogen syn | 99.97 | |
| 2bfw_A | 200 | GLGA glycogen synthase; glycosyltransferase family | 99.97 | |
| 2xci_A | 374 | KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci | 99.96 | |
| 3qhp_A | 166 | Type 1 capsular polysaccharide biosynthesis prote | 99.96 | |
| 3t5t_A | 496 | Putative glycosyltransferase; GTB fold, pseudoglyc | 99.96 | |
| 1v4v_A | 376 | UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t | 99.95 | |
| 2f9f_A | 177 | First mannosyl transferase (WBAZ-1); alpha-beta pr | 99.93 | |
| 3dzc_A | 396 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.89 | |
| 3otg_A | 412 | CALG1; calicheamicin, TDP, structural genomics, PS | 99.89 | |
| 3s2u_A | 365 | UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape | 99.89 | |
| 3ot5_A | 403 | UDP-N-acetylglucosamine 2-epimerase; structural ge | 99.87 | |
| 4fzr_A | 398 | SSFS6; structural genomics, PSI-biology, protein s | 99.85 | |
| 2iyf_A | 430 | OLED, oleandomycin glycosyltransferase; antibiotic | 99.85 | |
| 3rhz_A | 339 | GTF3, nucleotide sugar synthetase-like protein; gl | 99.83 | |
| 3tsa_A | 391 | SPNG, NDP-rhamnosyltransferase; glycosyltransferas | 99.83 | |
| 3oti_A | 398 | CALG3; calicheamicin, TDP, structural genomics, PS | 99.81 | |
| 3ia7_A | 402 | CALG4; glycosysltransferase, calicheamicin, enediy | 99.81 | |
| 3rsc_A | 415 | CALG2; TDP, enediyne, structural genomics, PSI-2, | 99.76 | |
| 2p6p_A | 384 | Glycosyl transferase; X-RAY-diffraction,urdamycina | 99.73 | |
| 3q3e_A | 631 | HMW1C-like glycosyltransferase; N-glycosylation; 2 | 99.64 | |
| 4hwg_A | 385 | UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc | 99.64 | |
| 2yjn_A | 441 | ERYCIII, glycosyltransferase; transferase, cytochr | 99.63 | |
| 2iya_A | 424 | OLEI, oleandomycin glycosyltransferase; carbohydra | 99.55 | |
| 3h4t_A | 404 | Glycosyltransferase GTFA, glycosyltransferase; van | 99.48 | |
| 4amg_A | 400 | Snogd; transferase, polyketide biosynthesis, GT1 f | 99.47 | |
| 1iir_A | 415 | Glycosyltransferase GTFB; rossmann fold; 1.80A {Am | 99.44 | |
| 1l5w_A | 796 | Maltodextrin phosphorylase; enzymatic catalysis, s | 99.4 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 1rrv_A | 416 | Glycosyltransferase GTFD; GT-B, glycosyltransferas | 99.33 | |
| 2o6l_A | 170 | UDP-glucuronosyltransferase 2B7; drug metabolism, | 99.3 | |
| 2c4m_A | 796 | Glycogen phosphorylase; allosteric control, phosph | 99.27 | |
| 2gj4_A | 824 | Glycogen phosphorylase, muscle form; transferase; | 99.22 | |
| 3hbm_A | 282 | UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je | 98.74 | |
| 2c1x_A | 456 | UDP-glucose flavonoid 3-O glycosyltransferase; WIN | 97.94 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 97.93 | |
| 2pq6_A | 482 | UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl | 97.84 | |
| 3hbf_A | 454 | Flavonoid 3-O-glucosyltransferase; glycosyltransfe | 97.77 | |
| 1ygp_A | 879 | Yeast glycogen phosphorylase; phosphorylated form, | 97.68 | |
| 3tov_A | 349 | Glycosyl transferase family 9; structural genomics | 97.62 | |
| 2gt1_A | 326 | Lipopolysaccharide heptosyltransferase-1; GT-B fol | 97.56 | |
| 2acv_A | 463 | Triterpene UDP-glucosyl transferase UGT71G1; glyco | 97.4 | |
| 1psw_A | 348 | ADP-heptose LPS heptosyltransferase II; structural | 97.27 | |
| 2jzc_A | 224 | UDP-N-acetylglucosamine transferase subunit ALG13; | 97.18 | |
| 2vch_A | 480 | Hydroquinone glucosyltransferase; glycosyltransfer | 97.09 | |
| 2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase | 90.78 | |
| 3q0i_A | 318 | Methionyl-tRNA formyltransferase; structural genom | 88.25 | |
| 3auf_A | 229 | Glycinamide ribonucleotide transformylase 1; struc | 86.33 | |
| 2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossm | 85.95 | |
| 4gi5_A | 280 | Quinone reductase; protein structure initiative, F | 85.63 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 85.4 | |
| 3egc_A | 291 | Putative ribose operon repressor; structural genom | 85.11 | |
| 3jte_A | 143 | Response regulator receiver protein; structural ge | 85.0 | |
| 3tqq_A | 314 | Methionyl-tRNA formyltransferase; protein synthesi | 84.93 | |
| 3h75_A | 350 | Periplasmic sugar-binding domain protein; protein | 84.7 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 84.41 | |
| 3av3_A | 212 | Phosphoribosylglycinamide formyltransferase; struc | 83.84 | |
| 2l2q_A | 109 | PTS system, cellobiose-specific IIB component (CE; | 83.54 | |
| 2ixd_A | 242 | LMBE-related protein; hexamer, deacetylase, rossma | 82.89 | |
| 3heb_A | 152 | Response regulator receiver domain protein (CHEY); | 82.54 | |
| 4ds3_A | 209 | Phosphoribosylglycinamide formyltransferase; struc | 82.02 | |
| 3rfo_A | 317 | Methionyl-tRNA formyltransferase; structural genom | 81.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 80.97 | |
| 1qkk_A | 155 | DCTD, C4-dicarboxylate transport transcriptional r | 80.77 | |
| 3grc_A | 140 | Sensor protein, kinase; protein structure initiati | 80.68 | |
| 3h1g_A | 129 | Chemotaxis protein CHEY homolog; sulfate-bound CHE | 80.36 | |
| 2zay_A | 147 | Response regulator receiver protein; structural ge | 80.27 |
| >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=370.15 Aligned_cols=368 Identities=16% Similarity=0.103 Sum_probs=287.3
Q ss_pred CccEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh----------hhhhhhcCcEEEec
Q 011779 73 KSKLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----------EHKMWDRGVQVISA 139 (477)
Q Consensus 73 ~~~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----------~~~~~~~g~~v~~~ 139 (477)
++|||+++++.+.| ||.++++.+|+++|+++||+|+|+++..+.........+ .......|++++.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 46899999988655 999999999999999999999999966544321000000 00002356666554
Q ss_pred cc----------------hh----------hHHH-----hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecc
Q 011779 140 KG----------------QE----------TINT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 188 (477)
Q Consensus 140 ~~----------------~~----------~~~~-----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 188 (477)
+. .. .+.+ ..+||+||+|+.........+.+. ...++++++|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGGLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKY----FKIPAVFTIHRLN 156 (439)
T ss_dssp ESGGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHH----HCCCEEEEESCCC
T ss_pred cchhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhc----cCCCEEEEecccc
Confidence 32 10 1111 349999999986554322222211 2257889999875
Q ss_pred cccch------------------hhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhh
Q 011779 189 GHYFK------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN 250 (477)
Q Consensus 189 ~~~~~------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 250 (477)
..... ......+..++.+++.|....+... ..++.+..++.+||||+|.+.|.+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~----~~~~~~~~~i~vi~ngvd~~~~~~~~~~ 232 (439)
T 3fro_A 157 KSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEW----GFFRNFEGKITYVFNGIDCSFWNESYLT 232 (439)
T ss_dssp CCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTH----HHHGGGTTSEEECCCCCCTTTSCGGGSC
T ss_pred cccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHh----hhhhhcCCceeecCCCCCchhcCccccc
Confidence 33111 1223344678888888888776622 2455778899999999999998776433
Q ss_pred HHHHHHHHHHHHhhCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCc--CceEEEEEecCCCcchHHHHH
Q 011779 251 VAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESE 327 (477)
Q Consensus 251 ~~~~~~~~~~r~~~~~~~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~--~~~~l~ivG~g~~~~~~~~~~ 327 (477)
......+..+++++|++++ ++|+++||+. +.||++.+++|++.+.+ +. ++++|+|+|+|+. .+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~ 301 (439)
T 3fro_A 233 GSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGW 301 (439)
T ss_dssp SCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHH
T ss_pred chhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHH
Confidence 3334457889999999888 9999999999 99999999999999876 44 8999999999842 34589
Q ss_pred HHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee
Q 011779 328 LRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV 405 (477)
Q Consensus 328 l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~ 405 (477)
+++++++++ +.+.|.|+. +++..+|+.||++|+||. .|+||++++|||++|+||| +++.||..|++.
T Consensus 302 l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi-------~s~~~~~~e~~~ 370 (439)
T 3fro_A 302 ARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI-------ASAVGGLRDIIT 370 (439)
T ss_dssp HHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEE-------EESSTHHHHHCC
T ss_pred HHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeE-------EcCCCCcceeEE
Confidence 999999988 788899954 779999999999999999 8999999999999999999 999999999998
Q ss_pred cCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 406 NGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 406 ~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++ +|++++++| +++++++|.++++ |++.++++++++++.+ ++|||+.+++++.++|++++++..+
T Consensus 371 ~~-~g~~~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (439)
T 3fro_A 371 NE-TGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRAFD 436 (439)
T ss_dssp TT-TCEEECTTC--HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCBCS
T ss_pred cC-ceEEeCCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhhhh
Confidence 87 999999998 9999999999999 9999999999999999 6799999999999999998876543
|
| >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=369.84 Aligned_cols=363 Identities=18% Similarity=0.213 Sum_probs=279.3
Q ss_pred ccCCCccEEEEEeccCCC---------CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEec
Q 011779 69 LSFMKSKLVLLVSHELSL---------SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA 139 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~---------gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 139 (477)
...+.||||+++++.+.| ||.++++.+++++|.++||+|+|++........ .......|++++.+
T Consensus 15 ~~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~------~~~~~~~~v~v~~~ 88 (438)
T 3c48_A 15 VPRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQG------EIVRVAENLRVINI 88 (438)
T ss_dssp ----CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGC------SEEEEETTEEEEEE
T ss_pred ccCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCc------ccccccCCeEEEEe
Confidence 345677899999987654 888999999999999999999999966432110 00001235555433
Q ss_pred cc--------------h----hhH----HHhc-CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----
Q 011779 140 KG--------------Q----ETI----NTAL-KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---- 192 (477)
Q Consensus 140 ~~--------------~----~~~----~~~~-~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---- 192 (477)
+. . +.+ .+.. +||+||+|..........+.+. ...++++++|+......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~ 164 (438)
T 3c48_A 89 AAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRD 164 (438)
T ss_dssp CCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC--
T ss_pred cCCCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCccccccccc
Confidence 21 0 011 1222 5999999974433222111111 12567888888632110
Q ss_pred ----------hhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHH
Q 011779 193 ----------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (477)
Q Consensus 193 ----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~ 262 (477)
.......++.++.+++.|....+.+.+ .+|++..++.+||||+|.+.|.+.... .++.+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~g~~~~k~~vi~ngvd~~~~~~~~~~-----~~~~~r~ 235 (438)
T 3c48_A 165 DSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMH----HYDADPDRISVVSPGADVELYSPGNDR-----ATERSRR 235 (438)
T ss_dssp --CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHH
T ss_pred ccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHH----HhCCChhheEEecCCccccccCCcccc-----hhhhhHH
Confidence 011123456788888888887777654 567888899999999999887654221 1245888
Q ss_pred hhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcC--ceEEEEEec----CCCcchHHHHHHHHHHHhcC
Q 011779 263 SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP--SVHAVIIGS----DMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 263 ~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~--~~~l~ivG~----g~~~~~~~~~~l~~~~~~~~ 336 (477)
++++++++++|+++||+.+.||++.+++|+..+.+ ++| +++|+|+|+ | ++.+.+++++++++
T Consensus 236 ~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~p~~~~~l~i~G~~~~~g-----~~~~~l~~~~~~~~ 303 (438)
T 3c48_A 236 ELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD-------RDPDRNLRVIICGGPSGPN-----ATPDTYRHMAEELG 303 (438)
T ss_dssp HTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH-------HCTTCSEEEEEECCBC-----------CHHHHHHHHTT
T ss_pred hcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh-------hCCCcceEEEEEeCCCCCC-----cHHHHHHHHHHHcC
Confidence 99998899999999999999999999999999876 445 899999998 5 67889999999999
Q ss_pred CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec
Q 011779 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~ 414 (477)
+.++|.|+|++ +++..+|+.||++|+||. .|+||++++|||++|+||| +++.||..|++.++.+|++++
T Consensus 304 l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI-------~~~~~~~~e~i~~~~~g~~~~ 374 (438)
T 3c48_A 304 VEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGLVAMEAQASGTPVI-------AARVGGLPIAVAEGETGLLVD 374 (438)
T ss_dssp CTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHHTTCCEE-------EESCTTHHHHSCBTTTEEEES
T ss_pred CCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCchHHHHHHHcCCCEE-------ecCCCChhHHhhCCCcEEECC
Confidence 99999999997 789999999999999998 9999999999999999999 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++| +++++++|.++++|++.+++|++++++.+.+ |+|+.+++++.++|++++++...
T Consensus 375 ~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 375 GHS--PHAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSLYNDAIANENV 431 (438)
T ss_dssp SCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhhhccc
Confidence 988 9999999999999999999999999999988 99999999999999999987654
|
| >3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-46 Score=362.61 Aligned_cols=355 Identities=20% Similarity=0.243 Sum_probs=285.3
Q ss_pred CCCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------
Q 011779 71 FMKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------- 141 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------- 141 (477)
+|++|||+++++.+++ ||+++++.++++.| +||+|+|++........ .......++.++....
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 72 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEA------HAYDKTLDYEVIRWPRSVMLPTP 72 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHH------HHHHTTCSSEEEEESSSSCCSCH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccch------hhhccccceEEEEccccccccch
Confidence 4678999999987764 89999999999999 69999999976543210 1112345677765433
Q ss_pred -----hhhHHHhcCCcEEEEcCcchhhHHHHHhh-hCCCccccceeeeeeeccccc-----chhhHhhcccccccceeee
Q 011779 142 -----QETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVAGAMIDS 210 (477)
Q Consensus 142 -----~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~-----~~~~~~~~~~~~~~~~~~s 210 (477)
...+.+..+||+||+|......++....+ .+. +++++++|+....+ ........++.++.+++.|
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 148 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGA----SKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYIS 148 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTC----SEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESC
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCC----CcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcC
Confidence 24555678999999998654443333322 222 45788888753222 1122344567888999999
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .++ ...++.+||||+|.+.|.+... ..+..++++++++++.++|+++||+.+.||++.+++
T Consensus 149 ~~~~~~~~~----~~~-~~~~~~vi~ngv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~ 218 (394)
T 3okp_A 149 QYTLRRFKS----AFG-SHPTFEHLPSGVDVKRFTPATP-----EDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIK 218 (394)
T ss_dssp HHHHHHHHH----HHC-SSSEEEECCCCBCTTTSCCCCH-----HHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHH
T ss_pred HHHHHHHHH----hcC-CCCCeEEecCCcCHHHcCCCCc-----hhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHH
Confidence 888877765 334 4478999999999998866221 125788999999999899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCC
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG 368 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~ 368 (477)
|+.++.+ +.++++|+|+|+| ++.+.+++++ .++.++|+|+|++ +++..+|+.||++|+||. .
T Consensus 219 a~~~l~~-------~~~~~~l~i~G~g-----~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~ 282 (394)
T 3okp_A 219 AMPQVIA-------ARPDAQLLIVGSG-----RYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--T 282 (394)
T ss_dssp HHHHHHH-------HSTTCEEEEECCC-----TTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--C
T ss_pred HHHHHHh-------hCCCeEEEEEcCc-----hHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--c
Confidence 9999876 5689999999998 6788888888 5667899999998 899999999999999999 7
Q ss_pred -------CcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 369 -------ECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 369 -------E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|+||++++|||++|+||| +++.||..|++.++ +|++++++| +++++++|.++++|++.+++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI-------~~~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~ 352 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVI-------AGTSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMG 352 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEE-------ECSSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHcCCCEE-------EeCCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999999999 99999999999998 999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~ 473 (477)
+++++.+.++|||+.+++++.++|+++..+..
T Consensus 353 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 353 AAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999865443
|
| >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=376.41 Aligned_cols=370 Identities=15% Similarity=0.149 Sum_probs=280.9
Q ss_pred ccEEEEEeccCC-------------CCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh-hhHHhhhhhhhhhcCcEEEec
Q 011779 74 SKLVLLVSHELS-------------LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVISA 139 (477)
Q Consensus 74 ~~~Il~v~~~~~-------------~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~ 139 (477)
+|||+++++.+. .||+++++.+++++|.++||+|+|++....... ......+.......|++++.+
T Consensus 7 ~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 86 (499)
T 2r60_A 7 IKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRI 86 (499)
T ss_dssp CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEE
T ss_pred cceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEe
Confidence 489999998643 388899999999999999999999996543211 000000000001346666543
Q ss_pred cc---------------------hhhHHHh--cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccc----
Q 011779 140 KG---------------------QETINTA--LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF---- 192 (477)
Q Consensus 140 ~~---------------------~~~~~~~--~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---- 192 (477)
+. ...+.+. .+||+||+|..........+.+. ...++++++|+......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~~ 162 (499)
T 2r60_A 87 PFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKLN 162 (499)
T ss_dssp CCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTTC
T ss_pred cCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhhc
Confidence 21 1122233 48999999975433322211111 12467889998532110
Q ss_pred ----------------h--hhHhhcccccccceeeehhhHHHHHHHhHhh--hc-c----CCCCeEEEecCCchhhhhhh
Q 011779 193 ----------------K--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEVA 247 (477)
Q Consensus 193 ----------------~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~-~----~~~~i~vi~ngvd~~~~~~~ 247 (477)
. ......++.++.+++.|....+.+.+ . +| + +..++.+||||+|.+.|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~----~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~ 238 (499)
T 2r60_A 163 VNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYS----HDLYRGAVNVEDDDKFSVIPPGVNTRVFDGE 238 (499)
T ss_dssp CCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTT----SGGGTTTCCTTCGGGEEECCCCBCTTTSSSC
T ss_pred cCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHh----hhcccccccccCCCCeEEECCCcChhhcCcc
Confidence 0 01133456788888888877766543 4 56 5 66789999999999888664
Q ss_pred hhhHHHHHHHHHHHHhhC-----CCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc-eEEEEEecCCCc-
Q 011779 248 EDNVAKRVLREHVRESLG-----VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNA- 320 (477)
Q Consensus 248 ~~~~~~~~~~~~~r~~~~-----~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~-~~l~ivG~g~~~- 320 (477)
... ..+..+|+++| ++++.++|+++||+.+.||++.+++|+..+.+. .++ ++|+|+|++...
T Consensus 239 ~~~----~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~-------~~~~~~l~i~G~~~~~~ 307 (499)
T 2r60_A 239 YGD----KIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKEL-------QDKANLVLTLRGIENPF 307 (499)
T ss_dssp CCH----HHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHH-------HHHCEEEEEESSCSBTT
T ss_pred chh----hhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHh-------CCCceEEEEECCCCCcc
Confidence 321 12467888888 778889999999999999999999999998652 233 689999982111
Q ss_pred ---------chHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc----CEEEEcCCCCCCcccHHHHHHHHcCCCE
Q 011779 321 ---------QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPV 385 (477)
Q Consensus 321 ---------~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a----Dv~v~pS~~~~E~~g~~~lEAma~G~Pv 385 (477)
+..|.++++++++++++.++|+|+|++ +++..+|+.| |++|+||. .|+||++++|||++|+||
T Consensus 308 ~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~Pv 385 (499)
T 2r60_A 308 EDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPA 385 (499)
T ss_dssp TBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCE
T ss_pred cccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCE
Confidence 112388999999999999999999996 8899999999 99999999 999999999999999999
Q ss_pred EeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 386 LLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 386 I~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
| +++.||..|++.++.+|++++++| +++++++|.++++|++.+++|++++++.+.++|||+.+++++.++|
T Consensus 386 I-------~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y 456 (499)
T 2r60_A 386 V-------VTRNGGPAEILDGGKYGVLVDPED--PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456 (499)
T ss_dssp E-------EESSBHHHHHTGGGTSSEEECTTC--HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred E-------EecCCCHHHHhcCCceEEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9 999999999999999999999998 9999999999999999999999999999988899999999999999
Q ss_pred HHHHhhhc
Q 011779 466 KEVLKKSK 473 (477)
Q Consensus 466 ~~~~~~~~ 473 (477)
++++++..
T Consensus 457 ~~~~~~~~ 464 (499)
T 2r60_A 457 QEIADRKD 464 (499)
T ss_dssp HHHHHC--
T ss_pred HHHHhhhh
Confidence 99987654
|
| >2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=360.31 Aligned_cols=358 Identities=18% Similarity=0.211 Sum_probs=271.6
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--h------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--Q------ 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--~------ 142 (477)
.|++|||+++++....||+++++.+++++|.++||+|++++.............+...+ .+...+.+.. .
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 114 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL--QGNESLKLTEEMKELYLNV 114 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHH--TTCCSCCCCHHHHHHHHHH
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceee--cccccccccHHHHHHHHHH
Confidence 46789999999987779999999999999999999999998654321111011111111 1221222211 1
Q ss_pred ----hhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh---hHhhcccccccce-eeehhhH
Q 011779 143 ----ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKHLPLVAGAM-IDSHVTA 214 (477)
Q Consensus 143 ----~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~-~~s~~~~ 214 (477)
..+.+..+||+||+|++....+.. .... . .++++++|+........ ...+.+...+.++ +.+....
T Consensus 115 ~~~~~~~l~~~~~Dvv~~~~~~~~~~~~-~~~~----~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~ 188 (416)
T 2x6q_A 115 NRENSKFIDLSSFDYVLVHDPQPAALIE-FYEK----K-SPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQ 188 (416)
T ss_dssp HHHHHHSSCGGGSSEEEEESSTTGGGGG-GSCC----C-SCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSC
T ss_pred HHHHHHHHhhcCCCEEEEeccchhhHHH-HHHh----c-CCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHH
Confidence 111234589999999865443321 1111 1 57888999764332211 1223344555544 4443322
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+ +++..++.+||||+|...+.+.+.+ ...+..+|+++++++++++|+++||+.+.||++.+++|+..
T Consensus 189 ~----------~~~~~~~~vi~ngvd~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 255 (416)
T 2x6q_A 189 P----------ELDRNKAVIMPPSIDPLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255 (416)
T ss_dssp T----------TSCTTTEEECCCCBCTTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHH
T ss_pred h----------hCCccceEEeCCCCChhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 2 2344789999999998766432211 12356789999999999999999999999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC-----CHHHHHHhcCEEEEcCCCCCC
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~-----~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.+ +.|+++|+|+|+|+..+..+.+.++++++++++.++|+|+|+.. ++..+|+.||++|+||. .|
T Consensus 256 l~~-------~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E 326 (416)
T 2x6q_A 256 VKE-------KIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--RE 326 (416)
T ss_dssp HHH-------HCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SC
T ss_pred HHH-------hCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cC
Confidence 876 56899999999996444446788999999999999999999653 79999999999999999 89
Q ss_pred cccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
+||++++|||++|+||| +++.||+.|++.++.+|++++ | +++++++|.++++|++.+++|++++++.+.
T Consensus 327 ~~~~~~lEAma~G~PvI-------~~~~~g~~e~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 395 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVI-------GRAVGGIKFQIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVR 395 (416)
T ss_dssp SSCHHHHHHHHTTCCEE-------EESCHHHHHHCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCCEE-------EccCCCChhheecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999998 6 999999999999999999999999999998
Q ss_pred HhcCHHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~~ 469 (477)
++|||+.+++++.++|++++
T Consensus 396 ~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 396 KNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HHTBHHHHHHHHHHHHHTC-
T ss_pred HHcCHHHHHHHHHHHHHHhh
Confidence 89999999999999998765
|
| >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=353.53 Aligned_cols=341 Identities=20% Similarity=0.245 Sum_probs=267.2
Q ss_pred CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc------------------chhhHHH
Q 011779 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------------GQETINT 147 (477)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~------------------~~~~~~~ 147 (477)
.||+++++.+|+++|.++||+|++++...+.... ....++.+.... ....+.+
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 96 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN---------KVYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQ 96 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC-------------CCCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc---------ccCCceEEEecccccccccccccccHHHHHHHHHHHH
Confidence 4899999999999999999999999975432100 011222222110 1134445
Q ss_pred hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc------cchhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..+||+||+|+.....+...+.+.... ...++++++|+.... .+.......++.++.+++.|....+.+.+
T Consensus 97 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~-- 173 (394)
T 2jjm_A 97 RENLDILHVHYAIPHAICAYLAKQMIG-ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHE-- 173 (394)
T ss_dssp HHTCSEEEECSSTTHHHHHHHHHHHTT-TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHH--
T ss_pred HcCCCEEEEcchhHHHHHHHHHHHhhc-CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHH--
Confidence 689999999975433322222221111 125788899984321 12223344557788899999888877665
Q ss_pred HhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh
Q 011779 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (477)
Q Consensus 222 ~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 301 (477)
.++. ..++.+||||+|.+.|.+.. +..+++++++++++++|+++||+.+.||++.+++|+..+.+
T Consensus 174 --~~~~-~~~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~---- 238 (394)
T 2jjm_A 174 --LVKP-NKDIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVT---- 238 (394)
T ss_dssp --HTCC-SSCEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHH----
T ss_pred --hhCC-cccEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHh----
Confidence 3333 56899999999998876542 25577889998888999999999999999999999999865
Q ss_pred hccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHc
Q 011779 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (477)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~ 381 (477)
+ ++++|+|+|+| +..++++++++++++.++|.|+|+.+++..+|+.||++|+||. .|+||++++|||++
T Consensus 239 ---~-~~~~l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~ 307 (394)
T 2jjm_A 239 ---E-VDAKLLLVGDG-----PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFGLVLLEAMAC 307 (394)
T ss_dssp ---S-SCCEEEEECCC-----TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHT
T ss_pred ---h-CCCEEEEECCc-----hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCchHHHHHHhc
Confidence 3 57999999998 5788899999999999999999999999999999999999999 99999999999999
Q ss_pred CCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 382 QLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
|+||| +++.||..|++.++.+|++++++| +++++++|.++++|++.+++|++++++.+.+.|||+.+++++
T Consensus 308 G~PvI-------~~~~~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 378 (394)
T 2jjm_A 308 GVPCI-------GTRVGGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQY 378 (394)
T ss_dssp TCCEE-------EECCTTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCEE-------EecCCChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999 999999999999999999999998 999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHhhhc
Q 011779 462 AVVLKEVLKKSK 473 (477)
Q Consensus 462 ~~~~~~~~~~~~ 473 (477)
.++|++++++.+
T Consensus 379 ~~~~~~~~~~~~ 390 (394)
T 2jjm_A 379 ETIYYDVLRDDK 390 (394)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHHhhhh
Confidence 999999987654
|
| >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=357.94 Aligned_cols=370 Identities=16% Similarity=0.140 Sum_probs=272.7
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh-----h----hh--hh---hhhcCcEE
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY-----S----LE--HK---MWDRGVQV 136 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~-----~----~~--~~---~~~~g~~v 136 (477)
|||+++++.+.| ||+++++.+|+++|.++||+|+|++...+........ . .. .. ....|+++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 80 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEecccccccccccccceeEEEEEecCCeEEEEEEEecCceE
Confidence 789999987643 8889999999999999999999999654211000000 0 00 00 01246666
Q ss_pred Eeccch--------------------------------hhHH----HhcCCcEEEEcCcchhhHHHHHhhhCCCccccce
Q 011779 137 ISAKGQ--------------------------------ETIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (477)
Q Consensus 137 ~~~~~~--------------------------------~~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (477)
+.+... ..+. +..+||+||+|+...+.. ....... .....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~-~~~~~~~-~~~~~p~ 158 (485)
T 1rzu_A 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMT-PVYMRYA-ETPEIPS 158 (485)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTH-HHHHHHS-SSCCCCE
T ss_pred EEEeChHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHH-HHHHhhc-ccCCCCE
Confidence 543210 0111 246899999998543332 2222221 1122578
Q ss_pred eeeeeeccccc-c----------h---------------hhHhhcccccccceeeehhhHHHHHHH-hH----hhhccCC
Q 011779 181 LWWIHEMRGHY-F----------K---------------LDYVKHLPLVAGAMIDSHVTAEYWKNR-TR----ERLRIKM 229 (477)
Q Consensus 181 i~~~h~~~~~~-~----------~---------------~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~----~~~~~~~ 229 (477)
++++|+..... . . ......+..++.+++.|....+.+.+. +. ..++.+.
T Consensus 159 v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~ 238 (485)
T 1rzu_A 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRA 238 (485)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTG
T ss_pred EEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhhcCEEEecCHhHHHHHhccccCcchHHHHHhhc
Confidence 89999853210 0 0 112233466788888888877766542 00 0112456
Q ss_pred CCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCCC-CeEEEEEeecccCCCHHHHHHHHHHHHH
Q 011779 230 PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRNE-DLLFAIINSVSRGKGQDLFLHSFYESLE 297 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~~-~~~il~vGrl~~~Kg~~~ll~a~~~l~~ 297 (477)
.++.+||||+|.+.|.+.... ..+...+..+|+++|++++ .++|+++||+.++||++.+++|+..+.+
T Consensus 239 ~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~ 318 (485)
T 1rzu_A 239 HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS 318 (485)
T ss_dssp GGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH
T ss_pred CCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh
Confidence 789999999999888765321 1122235778999999875 6799999999999999999999999865
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccCC-HHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~~-l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
++++|+|+|+|+. ++.+.+++++++++ ++|+ |.|+..+ +..+|+.||++|+||. .|+||+++
T Consensus 319 ---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~~~~ 382 (485)
T 1rzu_A 319 ---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQ 382 (485)
T ss_dssp ---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHH
T ss_pred ---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcEEEecCCCHHHHHHHHhcCCEEEECcc--cCCCCHHH
Confidence 6899999999841 36888999999885 6887 7898744 5899999999999999 99999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHHHH---hCHHHHHHHHHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRLTMGKR 443 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~~~~~~ 443 (477)
+|||++|+||| +++.||+.|++.++ .+|++++++| +++++++|.+++ +|++.+++|+++
T Consensus 383 lEAma~G~PvI-------~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~ 453 (485)
T 1rzu_A 383 LYALRYGCIPV-------VARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKL 453 (485)
T ss_dssp HHHHHHTCEEE-------EESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCCEE-------EeCCCChhheecccccccccccCCcceEeCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999 99999999999998 8999999998 999999999999 799999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 444 GYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
+++ +.|||+.+++++.++|++++.+...
T Consensus 454 ~~~---~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 454 GMK---SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp HHT---CCCBHHHHHHHHHHHHHHHTC----
T ss_pred HHH---HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 975 7899999999999999999876543
|
| >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=352.12 Aligned_cols=355 Identities=14% Similarity=0.126 Sum_probs=273.2
Q ss_pred cEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChh---hH--HhhhhhhhhhcCcEEEeccc--hhhHH
Q 011779 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEED---EV--IYSLEHKMWDRGVQVISAKG--QETIN 146 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~---~~--~~~~~~~~~~~g~~v~~~~~--~~~~~ 146 (477)
|||+++++.++. ||+++++..|+++|+++ |+|++++........ .. ........ ......+... .....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l 77 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV--RGLNEQGFYYSGLSEFI 77 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH--TTCCSTTCCHHHHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc--cccccccchHHHHHHHH
Confidence 789999987665 88889999999999999 999999954432100 00 00000001 1111001111 23445
Q ss_pred HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccc--cceeeehhhHHHHHHHhHhh
Q 011779 147 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA--GAMIDSHVTAEYWKNRTRER 224 (477)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~ 224 (477)
+..+||+||+|..............+++.. .+++...|......... ....+...+ .+++.|....+.+.+
T Consensus 78 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~S~~~~~~~~~----- 150 (413)
T 3oy2_A 78 DVHKPDIVMIYNDPIVIGNYLLAMGKCSHR-TKIVLYVDLVSKNIREN-LWWIFSHPKVVGVMAMSKCWISDICN----- 150 (413)
T ss_dssp HHHCCSEEEEEECHHHHHHHHHHGGGCCSC-CEEEEEECCCSBSCCGG-GGGGGGCTTEEEEEESSTHHHHHHHH-----
T ss_pred HhcCCCEEEEcchHHHHHHHHHHhccCCCC-CceeeeccccchhhHHH-HHHHHhccCCceEEEcCHHHHHHHHH-----
Confidence 667999999996443332222333344432 45566666554333322 355666756 899999888887764
Q ss_pred hccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 225 ~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++. ..++.+||||+|.+.| ...++++++++ +.++|+++||+.+.||++.+++|+.++.+
T Consensus 151 ~~~-~~~~~vi~ngvd~~~~-------------~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~----- 211 (413)
T 3oy2_A 151 YGC-KVPINIVSHFVDTKTI-------------YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS----- 211 (413)
T ss_dssp TTC-CSCEEECCCCCCCCCC-------------TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-----
T ss_pred cCC-CCceEEeCCCCCHHHH-------------HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-----
Confidence 455 5789999999999876 12456678877 88999999999999999999999999877
Q ss_pred ccCcCceEEEEEecCCCcc-hHHHHHHHHHHHhcCCCCc-------EEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 303 KLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDR-------VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~-~~~~~~l~~~~~~~~l~~~-------v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.|+++|+|+|+|+... ....+.++++++++++.++ |.|.|++ +++..+|+.||++|+||. .|+||
T Consensus 212 --~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~ 287 (413)
T 3oy2_A 212 --KYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFG 287 (413)
T ss_dssp --HCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSC
T ss_pred --hCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCC
Confidence 66899999999985321 1145889999999999987 8888986 589999999999999999 99999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCc---------------ee--eecCCCCCHHHHHHHHHHHHhCHH
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTT---------------GL--LHPVGKEGITPLAKNIVKLATHVE 435 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~---------------G~--l~~~~d~~~~~la~~i~~ll~~~~ 435 (477)
++++|||++|+||| +++.||..|++.++.+ |+ +++++| +++++++| ++++|++
T Consensus 288 ~~~lEAma~G~PvI-------~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 288 LCSAEGAVLGKPLI-------ISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp HHHHHHHTTTCCEE-------EECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHH
T ss_pred cHHHHHHHcCCCEE-------EcCCCChHHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHH
Confidence 99999999999999 9999999999998887 99 999998 99999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 436 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 436 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
.+++|++++++.+.++|||+.+++++.++|++++++.
T Consensus 358 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 394 (413)
T 3oy2_A 358 NRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVE 394 (413)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999889999999999999999998754
|
| >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=354.37 Aligned_cols=366 Identities=14% Similarity=0.106 Sum_probs=270.4
Q ss_pred cEEEEEeccCC----CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHh--------hhh--hhh---hhcCcEEE
Q 011779 75 KLVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--------SLE--HKM---WDRGVQVI 137 (477)
Q Consensus 75 ~~Il~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~--------~~~--~~~---~~~g~~v~ 137 (477)
|||+++++.+. .||+++++.+|+++|+++||+|+|++...+........ .+. ..+ ...|++++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~ 80 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEEE
Confidence 78999998764 38889999999999999999999999654211000000 000 000 12466665
Q ss_pred eccc-----------------------------h---hhHHH----hcCCcEEEEcCcchhhHHHHHhhhCCCcccccee
Q 011779 138 SAKG-----------------------------Q---ETINT----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVL 181 (477)
Q Consensus 138 ~~~~-----------------------------~---~~~~~----~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i 181 (477)
.+.. . ..+.+ ..+||+||+|+...... ......+. ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~--~~~p~v 157 (485)
T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAARG--RPAKSV 157 (485)
T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHTT--CSSEEE
T ss_pred EEeChhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhcc--CCCCEE
Confidence 3311 0 01112 26899999998554332 22222111 235788
Q ss_pred eeeeeccccc-ch-------------------------hhHhhcccccccceeeehhhHHHHHHHhHhhhcc--------
Q 011779 182 WWIHEMRGHY-FK-------------------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-------- 227 (477)
Q Consensus 182 ~~~h~~~~~~-~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-------- 227 (477)
+++|+..... .. ......+..++.+++.|....+.+.+. .+|.
T Consensus 158 ~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~ 234 (485)
T 2qzs_A 158 FTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEP---QFAYGMEGLLQQ 234 (485)
T ss_dssp EEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH---HHHTTCHHHHHH
T ss_pred EEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHhcCeEEecCHHHHHHHhcc---ccCcchHHHHHh
Confidence 9999863211 00 111223456788888888877765432 1332
Q ss_pred CC--CCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCC--CCeEEEEEeecccCCCHHHHHHHH
Q 011779 228 KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSF 292 (477)
Q Consensus 228 ~~--~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~--~~~~il~vGrl~~~Kg~~~ll~a~ 292 (477)
+. .++.+||||+|.+.|.+.... ......+..+|+++|+++ +.++|+++||+.+.||++.+++|+
T Consensus 235 ~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~ 314 (485)
T 2qzs_A 235 RHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEAL 314 (485)
T ss_dssp HHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHH
T ss_pred hccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHH
Confidence 22 689999999999888764321 112223578899999986 779999999999999999999999
Q ss_pred HHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE-EccccC-CHHHHHHhcCEEEEcCCCCCCc
Q 011779 293 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTL-TVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 293 ~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~-~~g~~~-~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
+.+.+ ++++|+|+|+|+. ++.+.+++++++++ ++|. |.|+.. ++..+|+.||++|+||. .|+
T Consensus 315 ~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~ 378 (485)
T 2qzs_A 315 PGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--GQVGVQIGYHEAFSHRIMGGADVILVPSR--FEP 378 (485)
T ss_dssp HHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--TTEEEEESCCHHHHHHHHHHCSEEEECCS--CCS
T ss_pred HHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--CcEEEeCCCCHHHHHHHHHhCCEEEECCc--cCC
Confidence 99865 6899999999842 37888999999886 6886 889864 45899999999999999 999
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC---------CceeeecCCCCCHHHHHHHHHHHH---hCHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG---------TTGLLHPVGKEGITPLAKNIVKLA---THVERRL 438 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~---------~~G~l~~~~d~~~~~la~~i~~ll---~~~~~~~ 438 (477)
||++++|||++|+||| +++.||+.|++.++ .+|++++++| +++++++|.+++ +|++.++
T Consensus 379 ~g~~~lEAma~G~PvI-------~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~~la~~i~~ll~~~~~~~~~~ 449 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPL-------VRRTGGLADTVSDCSLENLADGVASGFVFEDSN--AWSLLRAIRRAFVLWSRPSLWR 449 (485)
T ss_dssp SCSHHHHHHHHTCEEE-------EESSHHHHHHCCBCCHHHHHTTCCCBEEECSSS--HHHHHHHHHHHHHHHTSHHHHH
T ss_pred CcHHHHHHHHCCCCEE-------ECCCCCccceeccCccccccccccceEEECCCC--HHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999 99999999999998 8999999998 999999999999 7999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
+|++++++ ++|||+.++++|.++|++++.....
T Consensus 450 ~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~~~~~ 482 (485)
T 2qzs_A 450 FVQRQAMA---MDFSWQVAAKSYRELYYRLKLEHHH 482 (485)
T ss_dssp HHHHHHHH---CCCCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHh---hcCCHHHHHHHHHHHHHHhhhhhcc
Confidence 99999875 7899999999999999998765544
|
| >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=345.60 Aligned_cols=348 Identities=16% Similarity=0.128 Sum_probs=267.6
Q ss_pred cEEEEEeccCCC-CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc------------
Q 011779 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------ 141 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------ 141 (477)
|||+++++.+.+ ||+++++.+++++|.++||+|++++....... ..|++++.++.
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~ 68 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC------------PKAFELIQVPVKSHTNHGRNAEY 68 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC------------CTTCEEEECCCCCSSHHHHHHHH
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC------------CCCcEEEEEccCcccchhhHHHH
Confidence 689999987544 88899999999999999999999996532210 12455543321
Q ss_pred ---hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchh-h-----Hhhcc--cccccceeee
Q 011779 142 ---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-D-----YVKHL--PLVAGAMIDS 210 (477)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-~-----~~~~~--~~~~~~~~~s 210 (477)
...+.+..+||+||+|+...+.... ..... ...+.+++.|......... . ....+ ..++.+++.|
T Consensus 69 ~~~l~~~i~~~~~Dvv~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 144 (374)
T 2iw1_A 69 YAWVQNHLKEHPADRVVGFNKMPGLDVY--FAADV--CYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLT 144 (374)
T ss_dssp HHHHHHHHHHSCCSEEEESSCCTTCSEE--ECCSC--CHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESC
T ss_pred HHHHHHHHhccCCCEEEEecCCCCceee--ecccc--ccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcC
Confidence 1234456799999998743322100 00011 1122233334332111110 0 11111 2567788888
Q ss_pred hhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHH
Q 011779 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
....+.+.+ .+|++..++.+||||+|.+.|.+.... ..+..+|+++|+++++++|+++||+.+.||++.+++
T Consensus 145 ~~~~~~~~~----~~~~~~~~~~vi~ngv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 145 DKQIADFQK----HYQTEPERFQILPPGIYPDRKYSEQIP----NSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp HHHHHHHHH----HHCCCGGGEEECCCCCCGGGSGGGSCT----THHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred HHHHHHHHH----HhCCChhheEEecCCcCHHhcCcccch----hHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 877776654 567888899999999999988765432 124678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~ 370 (477)
|+..+.+.. .++++|+++|+|. .++++++++++++.++|+|+|+.+++..+|+.||++|+||. .|+
T Consensus 217 a~~~l~~~~------~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~ 282 (374)
T 2iw1_A 217 ALASLPESL------RHNTLLFVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEA 282 (374)
T ss_dssp HHHTSCHHH------HHTEEEEEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCS
T ss_pred HHHHhHhcc------CCceEEEEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCC
Confidence 999885521 3689999999983 36788899999999999999999999999999999999999 899
Q ss_pred ccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeec-CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q 011779 371 FGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 449 (477)
Q Consensus 371 ~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~-~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 449 (477)
||++++|||++|+||| +++.||..|++.++.+|++++ ++| +++++++|.++++|++.++++++++++.+.
T Consensus 283 ~~~~~~Ea~a~G~Pvi-------~~~~~~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 353 (374)
T 2iw1_A 283 AGIVLLEAITAGLPVL-------TTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYAD 353 (374)
T ss_dssp SCHHHHHHHHHTCCEE-------EETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHCCCCEE-------EecCCCchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999998 778 999999999999999999999999999986
Q ss_pred HhcCHHHHHHHHHHHHHHHHh
Q 011779 450 EIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~~~ 470 (477)
.|+|+.+++++.++++..++
T Consensus 354 -~~~~~~~~~~~~~~l~~~l~ 373 (374)
T 2iw1_A 354 -TQDLYSLPEKAADIITGGLD 373 (374)
T ss_dssp -HSCCSCHHHHHHHHHHCC--
T ss_pred -HhhHHHHHHHHHHHHHHhhc
Confidence 57999999999999987553
|
| >3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=349.41 Aligned_cols=368 Identities=18% Similarity=0.159 Sum_probs=259.5
Q ss_pred CccEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhh------hhh--------hhhhcCc
Q 011779 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS------LEH--------KMWDRGV 134 (477)
Q Consensus 73 ~~~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~------~~~--------~~~~~g~ 134 (477)
..|||||++.++.| ||...++..|.++|+++||+|.|+++..+......... +.. .....|+
T Consensus 8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 87 (536)
T 3vue_A 8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV 87 (536)
T ss_dssp CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence 56899999988665 88889999999999999999999997665432100000 000 0011233
Q ss_pred EEEeccc----------------------------hh------hHH---H-------------hcCCcEEEEcCcchhhH
Q 011779 135 QVISAKG----------------------------QE------TIN---T-------------ALKADLIVLNTAVAGKW 164 (477)
Q Consensus 135 ~v~~~~~----------------------------~~------~~~---~-------------~~~~DiV~~~~~~~~~~ 164 (477)
+++.+.. .+ ... . ..++||+|+|....+..
T Consensus 88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~ 167 (536)
T 3vue_A 88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL 167 (536)
T ss_dssp EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence 3321100 00 000 0 12467888997544433
Q ss_pred HHHHhhh---CCCccccceeeeeeecccccc-----------hh----------------------hHhhccccccccee
Q 011779 165 LDAVLKE---DVPRVLPNVLWWIHEMRGHYF-----------KL----------------------DYVKHLPLVAGAMI 208 (477)
Q Consensus 165 ~~~~~~~---~~~~~~~~~i~~~h~~~~~~~-----------~~----------------------~~~~~~~~~~~~~~ 208 (477)
...+... .-.....++++++|+...... .. ..+..+..++.+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t 247 (536)
T 3vue_A 168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT 247 (536)
T ss_dssp HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence 2222211 111123689999997531100 00 01122346778888
Q ss_pred eehhhHHHHHHHhHhh----hccCCCCeEEEecCCchhhhhhhhhh------------HHHHHHHHHHHHhhCCC--CCC
Q 011779 209 DSHVTAEYWKNRTRER----LRIKMPDTYVVHLGNSKELMEVAEDN------------VAKRVLREHVRESLGVR--NED 270 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~----~~~~~~~i~vi~ngvd~~~~~~~~~~------------~~~~~~~~~~r~~~~~~--~~~ 270 (477)
+|...++.+....... ......++.+|+||||.+.|.|..+. ..+...+..+++.+|++ ++.
T Consensus 248 VS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~ 327 (536)
T 3vue_A 248 VSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKI 327 (536)
T ss_dssp SCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCCCCCCCC
Confidence 8888887765421100 11345689999999999998875321 23345567888888886 566
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--C
Q 011779 271 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--L 348 (477)
Q Consensus 271 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~ 348 (477)
++|+++||+.++||++.+++|+.++.+ .+.+|+++|.|.. ++...++.....+ ++++.+.+.. +
T Consensus 328 p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~--~~~v~~~~~~~~~ 393 (536)
T 3vue_A 328 PLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKY--PGKVRAVVKFNAP 393 (536)
T ss_dssp CEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHS--TTTEEEECSCCHH
T ss_pred cEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhc--CCceEEEEeccHH
Confidence 899999999999999999999999855 6778999998842 4555666666655 4688888864 6
Q ss_pred CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCcee----------eecCCCC
Q 011779 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGL----------LHPVGKE 418 (477)
Q Consensus 349 ~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~----------l~~~~d~ 418 (477)
++..+|+.||++|+||. +|+||++++|||+||+||| ++++||++|+|.++.+|+ ++++.|
T Consensus 394 ~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI-------~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d- 463 (536)
T 3vue_A 394 LAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCA-------CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD- 463 (536)
T ss_dssp HHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEE-------ECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH-
T ss_pred HHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEE-------EcCCCCchheeeCCCCccccccCCCceeEECCCC-
Confidence 68889999999999999 9999999999999999999 999999999999999998 667777
Q ss_pred CHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 419 ~~~~la~~i~~ll~--~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+++|+++|.++++ +.+.+++|.+++. ++.|||++++++|+++|+++
T Consensus 464 -~~~la~ai~ral~~~~~~~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 464 -VKKVAATLKRAIKVVGTPAYEEMVRNCM---NQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp -HHHHHHHHHHHHHHTTSHHHHHHHHHHH---HSCCSSHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhcCcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHh
Confidence 9999999998876 5555677776664 47899999999999999986
|
| >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=333.37 Aligned_cols=352 Identities=17% Similarity=0.145 Sum_probs=264.3
Q ss_pred CCccEEEEEeccCCC--CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhh---hhhhhc-CcEEEec-----c
Q 011779 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE---HKMWDR-GVQVISA-----K 140 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~~~~~~-g~~v~~~-----~ 140 (477)
.+||||+++++.+++ ||+++++.+++++|.++||+|++++............... ..+... ....... .
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHR 97 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHH
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHH
Confidence 456899999987644 8888999999999999999999999665432000000000 000000 0000011 1
Q ss_pred chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-h----hHhhcccccccceeeehhhHH
Q 011779 141 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-L----DYVKHLPLVAGAMIDSHVTAE 215 (477)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~----~~~~~~~~~~~~~~~s~~~~~ 215 (477)
....+.+..+||+||++......+...+... ...++++++|+....... . .....++.++.+++.|....+
T Consensus 98 ~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 173 (406)
T 2gek_A 98 KVKKWIAEGDFDVLHIHEPNAPSLSMLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARR 173 (406)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSSHHHHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHHHhcCCCEEEECCccchHHHHHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHH
Confidence 2334556679999999986544432222221 125788889985432211 1 111345678888888888877
Q ss_pred HHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHHHHHHHHHH
Q 011779 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFLHSFYE 294 (477)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~~ll~a~~~ 294 (477)
.+.+ .+ +..++ +||||+|.+.+.+.... .+++.++++|+++|++ .+.||++.+++|+.+
T Consensus 174 ~~~~----~~--~~~~~-vi~~~v~~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~ 233 (406)
T 2gek_A 174 WQME----AL--GSDAV-EIPNGVDVASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAVLLAALPK 233 (406)
T ss_dssp HHHH----HH--SSCEE-ECCCCBCHHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHHHHHHHHH
T ss_pred HHHH----hc--CCCcE-EecCCCChhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHHHHHHHHH
Confidence 7665 23 34578 99999999877654321 2233456899999999 999999999999999
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCccc
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFG 372 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g 372 (477)
+.+ +.|+++|+|+|+| +. +.++++++++ .++|.|+|++ +++..+|+.||++|+||. +.|+||
T Consensus 234 l~~-------~~~~~~l~i~G~~-----~~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~-~~e~~~ 297 (406)
T 2gek_A 234 LVA-------RFPDVEILIVGRG-----DE-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHL-GGESFG 297 (406)
T ss_dssp HHT-------TSTTCEEEEESCS-----CH-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCC-SCCSSC
T ss_pred HHH-------HCCCeEEEEEcCC-----cH-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCC-CCCCCc
Confidence 876 6689999999998 45 7888888877 6799999997 567999999999999985 389999
Q ss_pred HHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Q 011779 373 RITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 452 (477)
Q Consensus 373 ~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 452 (477)
++++|||++|+||| +++.||..|++.++.+|++++++| +++++++|.++++|++.++++++++++.++ .|
T Consensus 298 ~~~~Ea~a~G~PvI-------~~~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 298 IVLVEAMAAGTAVV-------ASDLDAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp HHHHHHHHHTCEEE-------ECCCHHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred hHHHHHHHcCCCEE-------EecCCcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 99999999999999 999999999999999999999988 999999999999999999999999999997 89
Q ss_pred CHHHHHHHHHHHHHHHHhhhc
Q 011779 453 QEHHMAERIAVVLKEVLKKSK 473 (477)
Q Consensus 453 s~~~~~~~~~~~~~~~~~~~~ 473 (477)
+|+.+++++.++|++++++..
T Consensus 368 s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 368 DWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp BHHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999986543
|
| >3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=353.36 Aligned_cols=374 Identities=13% Similarity=0.156 Sum_probs=266.8
Q ss_pred CccEEEEEeccCC---------C--CchhhHHHH--------HHHHHHhCCcEEE----EEecCCCCChhhHHhhhhhhh
Q 011779 73 KSKLVLLVSHELS---------L--SGGPLLLME--------LAFLLRGVGTKVN----WITIQKPSEEDEVIYSLEHKM 129 (477)
Q Consensus 73 ~~~~Il~v~~~~~---------~--gG~~~~~~~--------l~~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~ 129 (477)
|.++|++++.... + ||...++.+ |+++|+++||+|+ |+|...+.........-....
T Consensus 277 ~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i 356 (816)
T 3s28_A 277 MVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERV 356 (816)
T ss_dssp CCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEEC
T ss_pred ceeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceee
Confidence 4678999997653 3 555688874 7777788999876 998554332110000000111
Q ss_pred h-hcCcEEEeccch---------------------------hhHHH--hcCCcEEEEcCcchhhHHHHHhhhCCCccccc
Q 011779 130 W-DRGVQVISAKGQ---------------------------ETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPN 179 (477)
Q Consensus 130 ~-~~g~~v~~~~~~---------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (477)
. ..|+++++.+.. +.+.. ..+||+||+|....+.....+.+. ...|
T Consensus 357 ~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~----~gvP 432 (816)
T 3s28_A 357 YDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK----LGVT 432 (816)
T ss_dssp TTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH----HTCC
T ss_pred cCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH----cCCC
Confidence 1 236666443211 11111 237999999975444322222111 2257
Q ss_pred eeeeeeecccccch-------h---h---------HhhcccccccceeeehhhHHHHHHH---hHhh-------------
Q 011779 180 VLWWIHEMRGHYFK-------L---D---------YVKHLPLVAGAMIDSHVTAEYWKNR---TRER------------- 224 (477)
Q Consensus 180 ~i~~~h~~~~~~~~-------~---~---------~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~------------- 224 (477)
++++.|........ . . ....+..++.+++.|....+.+.+. +...
T Consensus 433 ~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~ 512 (816)
T 3s28_A 433 QCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVH 512 (816)
T ss_dssp EEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEE
T ss_pred EEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhccc
Confidence 78888875321110 0 0 1124567888888888777642211 1000
Q ss_pred -hccCCCCeEEEecCCchhhhhhhhhhHH-----HHH------HHHHHHHhhCC--CCCCeEEEEEeecccCCCHHHHHH
Q 011779 225 -LRIKMPDTYVVHLGNSKELMEVAEDNVA-----KRV------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFLH 290 (477)
Q Consensus 225 -~~~~~~~i~vi~ngvd~~~~~~~~~~~~-----~~~------~~~~~r~~~~~--~~~~~~il~vGrl~~~Kg~~~ll~ 290 (477)
.+...+++.+||||+|.+.|.+...... ... .....++.+|+ ++++++|+++||+.+.||++.+++
T Consensus 513 gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIe 592 (816)
T 3s28_A 513 GIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVE 592 (816)
T ss_dssp SCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHH
T ss_pred ccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHH
Confidence 0122348999999999998877542211 000 01123455666 678899999999999999999999
Q ss_pred HHHHHHHHHHhhccCcCceEEEEEecCCC------cchHHHHHHHHHHHhcCCCCcEEEcccc------CCHHHHHH-hc
Q 011779 291 SFYESLELIKEKKLEVPSVHAVIIGSDMN------AQTKFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-AI 357 (477)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~------~~~~~~~~l~~~~~~~~l~~~v~~~g~~------~~l~~~~~-~a 357 (477)
|+.++.+ ..++++|+|+|+|++ .+..+.+.++++++++++.++|.|+|++ +++..+|+ ++
T Consensus 593 A~~~L~~-------~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aa 665 (816)
T 3s28_A 593 WYGKNTR-------LRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTK 665 (816)
T ss_dssp HHHHCHH-------HHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHh-------hCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcC
Confidence 9999865 447899999999951 1112788899999999999999999964 45788888 68
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH----hC
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA----TH 433 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll----~~ 433 (477)
|++|+||. .|+||++++||||||+||| +++.||+.|++.++.+|++++++| +++++++|.+++ .|
T Consensus 666 DvfV~PS~--~EgfglvllEAMA~G~PVI-------asd~GG~~EiV~dg~~Gllv~p~D--~e~LA~aI~~lL~~Ll~d 734 (816)
T 3s28_A 666 GAFVQPAL--YEAFGLTVVEAMTCGLPTF-------ATCKGGPAEIIVHGKSGFHIDPYH--GDQAADTLADFFTKCKED 734 (816)
T ss_dssp CEEEECCS--CBSSCHHHHHHHHTTCCEE-------EESSBTHHHHCCBTTTBEEECTTS--HHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCC--ccCccHHHHHHHHcCCCEE-------EeCCCChHHHHccCCcEEEeCCCC--HHHHHHHHHHHHHHhccC
Confidence 99999999 9999999999999999999 999999999999999999999998 999999997776 89
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 434 VERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 434 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
++.+++|++++++.+.++|||+.+++++.++|+..
T Consensus 735 ~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 735 PSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
|
| >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=323.58 Aligned_cols=310 Identities=16% Similarity=0.100 Sum_probs=248.1
Q ss_pred CCccEEEEEecc-----------CC---CCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEE
Q 011779 72 MKSKLVLLVSHE-----------LS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI 137 (477)
Q Consensus 72 ~~~~~Il~v~~~-----------~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 137 (477)
|++|||+++++. ++ .||+++++.+++++|.++||+|++++....... ..+++++
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~------------~~~~~~~ 68 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAG------------RPGLTVV 68 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCC------------STTEEEC
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCC------------CCcceec
Confidence 667999999988 22 388889999999999999999999996654321 1244554
Q ss_pred eccc---hhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhH
Q 011779 138 SAKG---QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 138 ~~~~---~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 214 (477)
+... ...+.+..+||+||+|+....... ... ...+ ++++|+..... ...+.+++.|....
T Consensus 69 ~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~-----~~~--~~~p-v~~~h~~~~~~---------~~~d~ii~~S~~~~ 131 (342)
T 2iuy_A 69 PAGEPEEIERWLRTADVDVVHDHSGGVIGPA-----GLP--PGTA-FISSHHFTTRP---------VNPVGCTYSSRAQR 131 (342)
T ss_dssp SCCSHHHHHHHHHHCCCSEEEECSSSSSCST-----TCC--TTCE-EEEEECSSSBC---------SCCTTEEESCHHHH
T ss_pred cCCcHHHHHHHHHhcCCCEEEECCchhhHHH-----Hhh--cCCC-EEEecCCCCCc---------ccceEEEEcCHHHH
Confidence 4332 345556679999999986544322 111 2256 88999875432 12788888888877
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
+.+.+ ..++.+||||+|.+.|.+... . .+++.+|+++||+.+.||++.+++|++.
T Consensus 132 ~~~~~---------~~~~~vi~ngvd~~~~~~~~~---------------~-~~~~~~i~~vG~~~~~Kg~~~li~a~~~ 186 (342)
T 2iuy_A 132 AHCGG---------GDDAPVIPIPVDPARYRSAAD---------------Q-VAKEDFLLFMGRVSPHKGALEAAAFAHA 186 (342)
T ss_dssp HHTTC---------CTTSCBCCCCBCGGGSCCSTT---------------C-CCCCSCEEEESCCCGGGTHHHHHHHHHH
T ss_pred HHHhc---------CCceEEEcCCCChhhcCcccc---------------c-CCCCCEEEEEeccccccCHHHHHHHHHh
Confidence 76542 468999999999988765432 1 1345679999999999999999999987
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccC--CHHHHHHhcCEEEEcCCC------
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQA------ 366 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~--~l~~~~~~aDv~v~pS~~------ 366 (477)
+ +++|+|+|+| +..+.+++++++++ ++|+|+|+++ ++.++|+.||++|+||..
T Consensus 187 ~------------~~~l~i~G~g-----~~~~~l~~~~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~ 247 (342)
T 2iuy_A 187 C------------GRRLVLAGPA-----WEPEYFDEITRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWG 247 (342)
T ss_dssp H------------TCCEEEESCC-----CCHHHHHHHHHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTC
T ss_pred c------------CcEEEEEeCc-----ccHHHHHHHHHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccc
Confidence 5 5899999998 56788888888887 7999999974 569999999999999971
Q ss_pred --CCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 367 --WGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 367 --~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
|.|+||++++|||++|+||| +++.||..|++.+ +.+|+++++ | +++++++|.++++ ++
T Consensus 248 ~~~~E~~~~~~~EAma~G~PvI-------~s~~~~~~e~~~~~~~~~g~~~~~-d--~~~l~~~i~~l~~--------~~ 309 (342)
T 2iuy_A 248 GIWCEPGATVVSEAAVSGTPVV-------GTGNGCLAEIVPSVGEVVGYGTDF-A--PDEARRTLAGLPA--------SD 309 (342)
T ss_dssp SCCCCCCCHHHHHHHHTTCCEE-------ECCTTTHHHHGGGGEEECCSSSCC-C--HHHHHHHHHTSCC--------HH
T ss_pred cccccCccHHHHHHHhcCCCEE-------EcCCCChHHHhcccCCCceEEcCC-C--HHHHHHHHHHHHH--------HH
Confidence 26999999999999999999 9999999999999 899999999 8 9999999999986 67
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++.+.++|||+.+++++.++|++++++.
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 310 EVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp HHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 888888899999999999999999998754
|
| >2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=309.66 Aligned_cols=339 Identities=12% Similarity=0.114 Sum_probs=227.5
Q ss_pred CCccEEEEEeccCCCC---chhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhh----hh-hcC--cEEEeccc
Q 011779 72 MKSKLVLLVSHELSLS---GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK----MW-DRG--VQVISAKG 141 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~g---G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~----~~-~~g--~~v~~~~~ 141 (477)
..+|||+++++.+.|+ |+.+.+.+++++|.++||+|+|++........ ....+... +. ... ..+.....
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDATPNPK-DLQSFKSFKYVMPEEDKDFALQIVPFND 122 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCCHH-HHGGGTTSEECCTTCCCCCSEEEEECSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecCCCChH-HHHhhhccceeeccCCccccceeeeccc
Confidence 3568999999998885 77778999999999999999999976432111 10001000 00 000 11111110
Q ss_pred -hhhHHHhcCCcEEEEcCcchhhHHHHHhh-----hCCCccccceeeeeeecccccchhh-----Hhhcccccc--ccee
Q 011779 142 -QETINTALKADLIVLNTAVAGKWLDAVLK-----EDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVA--GAMI 208 (477)
Q Consensus 142 -~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~h~~~~~~~~~~-----~~~~~~~~~--~~~~ 208 (477)
........++|+||++............. .... ..+.++.+|+....+.... ....+...+ .+++
T Consensus 123 ~~~~~~~~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 200 (413)
T 2x0d_A 123 RYNRTIPVAKHDIFIATAWWTAYAAQRIVSWQSDTYGIP--PNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVF 200 (413)
T ss_dssp CTTCCEEECTTEEEEECSHHHHHHHHHHHHHHHHHHTCC--CCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEE
T ss_pred cccccccCCCCCEEEEehHHHHHHHHHhhhhhhhhcccc--cCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEE
Confidence 11111234799999987544333222210 0111 1245556666544322111 112233333 3566
Q ss_pred eehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeec-ccCCCHHH
Q 011779 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDL 287 (477)
Q Consensus 209 ~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl-~~~Kg~~~ 287 (477)
.|....+.+.+ .|++..++.+++||+|.+.|.+.. .+ .+++..++++||+ .+.||++.
T Consensus 201 ~S~~~~~~l~~-----~g~~~~~~~~i~~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~ 259 (413)
T 2x0d_A 201 NSELLKQYFNN-----KGYNFTDEYFFQPKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTL 259 (413)
T ss_dssp ESHHHHHHHHH-----HTCCCSEEEEECCCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHH
T ss_pred cCHHHHHHHHH-----cCCCCCceEEeCCCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHH
Confidence 77777776654 355556799999999987654311 11 2345677889996 67899999
Q ss_pred HHHHHHHHHHHHHhhccCcC---ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 288 FLHSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 288 ll~a~~~l~~~~~~~~~~~~---~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+++|++.+.+ +.| +++|+++|+|... .++++.++|+|+|++ +++..+|+.||++|+
T Consensus 260 li~A~~~l~~-------~~~~~~~~~l~ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~ 320 (413)
T 2x0d_A 260 IVEALKIFVQ-------KYDRSNEWKIISVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGIS 320 (413)
T ss_dssp HHHHHHHHHH-------HCTTGGGCEEEEEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHH-------hCCCCCceEEEEEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEE
Confidence 9999999876 445 4899999998421 356777899999985 889999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
||. .|+||++++||||||+||| ++ .+|..|++.++.+|++++++| +++++++|.++++|++++++
T Consensus 321 pS~--~E~~g~~~lEAmA~G~PVV-------~~-~~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~--- 385 (413)
T 2x0d_A 321 LMI--SPHPSYPPLEMAHFGLRVI-------TN-KYENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV--- 385 (413)
T ss_dssp CCS--SSSCCSHHHHHHHTTCEEE-------EE-CBTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC-------
T ss_pred ecC--CCCCCcHHHHHHhCCCcEE-------Ee-CCCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---
Confidence 999 8999999999999999999 94 567789999999999999999 99999999999998888776
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++.+ +.|+|+.+.++ .++|+++++
T Consensus 386 ~~~~~~-~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 386 DKKESS-NMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp ---CCB-SCGGGCCCC----TTHHHHHT
T ss_pred hHHHHH-HhCCHHHHHHH-HHHHHHHHh
Confidence 566555 57999999888 777777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=301.90 Aligned_cols=336 Identities=13% Similarity=0.071 Sum_probs=246.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHH--HHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-----chh
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFL--LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQE 143 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-----~~~ 143 (477)
..++|||+++++.+.+||.++++.++++. +.+.||+|++++...+.... +...+...+ .+.... ...
T Consensus 202 ~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~ 275 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGST-----LRTRLAQAS-TLHDVTALGHLATA 275 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCH-----HHHHHHHTS-EEEECTTCCHHHHH
T ss_pred CCCCeEEEEECcccccChHHHHHHHHHhhccCCcccEEEEEEECCCCCccH-----HHHHHHhcC-eEEECCCCCHHHHH
Confidence 45678999999999889999999999999 78899999999965321111 122233333 333322 234
Q ss_pred hHHHhcCCcEEEEcCcchh-hHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhH
Q 011779 144 TINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (477)
.+.+..+||+||.+..... ..+.. ...+. .++..++|+...... .. ...+...+.+++.+.....
T Consensus 276 ~~i~~~~~Div~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~-~~-~~~~~~~d~~i~~s~~~~~------- 341 (568)
T 2vsy_A 276 KHIRHHGIDLLFDLRGWGGGGRPEV-FALRP----APVQVNWLAYPGTSG-AP-WMDYVLGDAFALPPALEPF------- 341 (568)
T ss_dssp HHHHHTTCSEEEECSSCTTCSSCHH-HHTCC----SSEEEEESSSSSCCC-CT-TCCEEEECTTTSCTTTGGG-------
T ss_pred HHHHhCCCCEEEECCCCCCcchHHH-HhcCC----CceeEeeecCCcccC-CC-CceEEEECCCcCCcccccC-------
Confidence 5557789999998653221 11111 11111 244445554321111 00 0111234555555544322
Q ss_pred hhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhh
Q 011779 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (477)
Q Consensus 223 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~ 302 (477)
++ +++.+|||.+......+... +...|+++|++++.+++ ++||+.+ ||++.+++++.++.+
T Consensus 342 --~~---~~i~~ipn~~~~~~~~~~~~-------~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~----- 402 (568)
T 2vsy_A 342 --YS---EHVLRLQGAFQPSDTSRVVA-------EPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR----- 402 (568)
T ss_dssp --CS---SEEEECSSCSCCCCTTCCCC-------CCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH-----
T ss_pred --Cc---ceeEcCCCcCCCCCCCCCCC-------CCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH-----
Confidence 22 67999999544321111000 12357788988776655 8999999 999999999999876
Q ss_pred ccCcCceEEEEEe-cCCCcchHHHHHHHHHHHhcCCC-CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHH
Q 011779 303 KLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (477)
Q Consensus 303 ~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~-~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEA 378 (477)
+.|+++|+|+| +| +..+.+++.++++|+. ++|+|+|++ +++..+|+.+|++|+||. + |||++++||
T Consensus 403 --~~~~~~l~i~G~~g-----~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEA 472 (568)
T 2vsy_A 403 --EVPDSVLWLLSGPG-----EADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDA 472 (568)
T ss_dssp --HCTTCEEEEECCST-----THHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHH
T ss_pred --hCCCcEEEEecCCH-----HHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHH
Confidence 56899999999 77 6889999999999998 999999998 489999999999999999 7 999999999
Q ss_pred HHcCCCEEeecccccc-------ccCC-------CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Q 011779 379 MAFQLPVLLQKCLYQG-------TAAG-------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRG 444 (477)
Q Consensus 379 ma~G~PvI~~~~~~~~-------~~~g-------g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a 444 (477)
|++|+||| + ++.| |+.|++.+ | +++++++|.++++|++.+++|++++
T Consensus 473 ma~G~Pvv-------~~~g~~~~s~~~~~~l~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~ 533 (568)
T 2vsy_A 473 LWTGCPVL-------TTPGETFAARVAGSLNHHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARV 533 (568)
T ss_dssp HHTTCCEE-------BCCCSSGGGSHHHHHHHHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhCCCCEE-------eccCCCchHHHHHHHHHHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999 8 9999 99998844 5 8999999999999999999999999
Q ss_pred HHHH--HHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 445 YERV--KEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 445 ~~~~--~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
++.+ .+.|+|+.++++++++|++++++...
T Consensus 534 ~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~ 565 (568)
T 2vsy_A 534 DVLRRASGVFHMDGFADDFGALLQALARRHGW 565 (568)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9988 67899999999999999999876543
|
| >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=272.47 Aligned_cols=320 Identities=14% Similarity=0.063 Sum_probs=230.3
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------- 141 (477)
|||++++. ..||.+..+..|+++|.++||+|++++...+.. .......|++++.+..
T Consensus 7 mkIl~~~~--~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (364)
T 1f0k_A 7 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 76 (364)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred cEEEEEeC--CCccchhHHHHHHHHHHHcCCEEEEEecCCcch--------hhhccccCCceEEecCCccCcCccHHHHH
Confidence 89999984 346777889999999999999999999764321 1122334555543221
Q ss_pred -----------hhhHHHhcCCcEEEEcCcchhhHHH-HHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 142 -----------QETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
...+.+..+||+||++......... .....+ .|++.+.|+..... ......+.++.+++.
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~~~~~---~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLG-----IPVVLHEQNGIAGL---TNKWLAKIATKVMQA 148 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTT-----CCEEEEECSSSCCH---HHHHHTTTCSEEEES
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcC-----CCEEEEecCCCCcH---HHHHHHHhCCEEEec
Confidence 1233455799999999754332221 122222 45666777642221 112223455666654
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCe-EEEEEeecccCCCHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLF 288 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~il~vGrl~~~Kg~~~l 288 (477)
+... ++ ++.+++||++.+.+.+.. .+++++++++.. ++++.|++.+.||.+.+
T Consensus 149 ~~~~-------------~~--~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~l 202 (364)
T 1f0k_A 149 FPGA-------------FP--NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTM 202 (364)
T ss_dssp STTS-------------SS--SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHH
T ss_pred Chhh-------------cC--CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHH
Confidence 4322 12 688999999988764421 134566666665 45556799999999999
Q ss_pred HHHHHHHHHHHHhhccCcCceE-EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCC
Q 011779 289 LHSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (477)
Q Consensus 289 l~a~~~l~~~~~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~ 367 (477)
++|+..+. .+++ ++++|+| + .+++++.+++++++ +|.|+|+++++..+|+.||++|+||.
T Consensus 203 i~a~~~l~----------~~~~~l~i~G~~-----~-~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg-- 263 (364)
T 1f0k_A 203 PQVAAKLG----------DSVTIWHQSGKG-----S-QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG-- 263 (364)
T ss_dssp HHHHHHHG----------GGEEEEEECCTT-----C-HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC--
T ss_pred HHHHHHhc----------CCcEEEEEcCCc-----h-HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc--
Confidence 99999873 1677 5678888 3 36788888888874 79999999999999999999999983
Q ss_pred CCcccHHHHHHHHcCCCEEeeccccccccCCCce--------EEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHH
Q 011779 368 GECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 439 (477)
Q Consensus 368 ~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~--------e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~ 439 (477)
|++++|||++|+||| +++.+|.. +++.++ .|++++++|.++++++++|.++ |++.+++
T Consensus 264 ----~~~~~EAma~G~Pvi-------~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~ 329 (364)
T 1f0k_A 264 ----ALTVSEIAAAGLPAL-------FVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLT 329 (364)
T ss_dssp ----HHHHHHHHHHTCCEE-------ECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHH
T ss_pred ----hHHHHHHHHhCCCEE-------EeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHH
Confidence 899999999999999 99998864 455455 5999998765589999999998 9999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 440 MGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 440 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
|++++++.+ +.|+|++++++++++|++.-.++
T Consensus 330 ~~~~~~~~~-~~~~~~~~~~~~~~~y~~~~~~~ 361 (364)
T 1f0k_A 330 MAERARAAS-IPDATERVANEVSRVARALEHHH 361 (364)
T ss_dssp HHHHHHHTC-CTTHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhh-ccCHHHHHHHHHHHHHHHHHhhc
Confidence 999999877 57999999999999998765443
|
| >2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-32 Score=268.42 Aligned_cols=314 Identities=13% Similarity=0.132 Sum_probs=216.3
Q ss_pred CCccEEEEEecc-CCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChh-hHHhh------hhhhhhhcCcEEEeccc--
Q 011779 72 MKSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-EVIYS------LEHKMWDRGVQVISAKG-- 141 (477)
Q Consensus 72 ~~~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~~~~------~~~~~~~~g~~v~~~~~-- 141 (477)
.++|||+++++. +++ |.......+++.|.++| +|+|++........ ..... ........|++++....
T Consensus 12 ~~~MkIl~is~~~~p~-~~~~~~~~l~~~l~~~G-~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~ 89 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFRT-PRRANIHFITDQLALRG-TTRFFSLRYSRLSRMKGDMRLPLDDTANTVVSHNGVDCYLWRTTV 89 (406)
T ss_dssp -CCSCEEEEESSCTTS-SSCCHHHHHHHHHHHHS-CEEEEECSCBTTHHHHTCTTGGGGGGTTSEEEETTEEEEECCBSS
T ss_pred CCCceEEEEecccCCC-hhhhhHhHHHHHHHhCC-ceEEEEecccHHHHhhccchhhhhccCccceecCCeEEEeecccc
Confidence 346899999987 664 32334456788888999 99999643211000 00000 00000124566543210
Q ss_pred ---------hh----------------hHHH-hcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccc-c----
Q 011779 142 ---------QE----------------TINT-ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H---- 190 (477)
Q Consensus 142 ---------~~----------------~~~~-~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-~---- 190 (477)
.+ .+.+ ..++|+||.+......+.......+ .+++.+.|+... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~~~~~~~~-----~p~v~~~h~~~~~~~~~~ 164 (406)
T 2hy7_A 90 HPFNTRRSWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKRVN-----PAAKLVYRASDGLSTINV 164 (406)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGHHHHHHHC-----TTSEEEEEESSCHHHHTC
T ss_pred CCccccchhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHHHHHHHhC-----CCEEEEEeccchhhcccc
Confidence 00 0111 1379999966544433222222222 456677886432 1
Q ss_pred --cchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCC
Q 011779 191 --YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (477)
Q Consensus 191 --~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 268 (477)
.........++.++.+++.|....+.+.+ .+ ++.+||||+|.+.|.+.... ..+
T Consensus 165 ~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-----~~----~i~vipngvd~~~f~~~~~~---------------~~~ 220 (406)
T 2hy7_A 165 ASYIEREFDRVAPTLDVIALVSPAMAAEVVS-----RD----NVFHVGHGVDHNLDQLGDPS---------------PYA 220 (406)
T ss_dssp CHHHHHHHHHHGGGCSEEEESCGGGGGGCSC-----ST----TEEECCCCBCTTHHHHHCSC---------------SCC
T ss_pred cHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----cC----CEEEEcCCcChHhcCccccc---------------ccC
Confidence 11122345567889999999888776543 12 79999999999887653211 012
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc-
Q 011779 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (477)
Q Consensus 269 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~- 347 (477)
++++|+++||+.+.||+ +..+.+ ..|+++|+|+|+| + ++++++.++|+|+|++
T Consensus 221 ~~~~i~~vGrl~~~Kg~------~~~l~~-------~~~~~~l~ivG~g-----~--------~~~~~l~~~V~f~G~~~ 274 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEF------FVVASK-------AFPQVTFHVIGSG-----M--------GRHPGYGDNVIVYGEMK 274 (406)
T ss_dssp SSEEEEEECCTTBCHHH------HHHHHH-------HCTTEEEEEESCS-----S--------CCCTTCCTTEEEECCCC
T ss_pred CCcEEEEEeccccccCH------HHHHHH-------hCCCeEEEEEeCc-----h--------HHhcCCCCCEEEcCCCC
Confidence 34899999999999998 333333 4489999999998 3 5677888999999997
Q ss_pred -CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH-------HcCCCEEeeccccccccCCCceEEeecCCceee-ecCCCC
Q 011779 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-------AFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLL-HPVGKE 418 (477)
Q Consensus 348 -~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm-------a~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l-~~~~d~ 418 (477)
+++..+|++||++|+||. .|+||++++||| |||+||| +|+. +.++.+|++ ++++|
T Consensus 275 ~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~Kl~eYla~G~PVI-------as~~------v~~~~~G~l~v~~~d- 338 (406)
T 2hy7_A 275 HAQTIGYIKHARFGIAPYA--SEQVPVYLADSSMKLLQYDFFGLPAV-------CPNA------VVGPYKSRFGYTPGN- 338 (406)
T ss_dssp HHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCHHHHHHHHHTCCEE-------EEGG------GTCSCSSEEEECTTC-
T ss_pred HHHHHHHHHhcCEEEECCC--cccCchHHHHHHHHHHHHhhCCCcEE-------Eehh------cccCcceEEEeCCCC-
Confidence 689999999999999999 999999999999 9999999 8887 667889999 99998
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV--LKEVL 469 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~--~~~~~ 469 (477)
+++++++|.++++|++ + ...+.|+|+.++++++++ |+++.
T Consensus 339 -~~~la~ai~~ll~~~~---------~-~~~~~~sw~~~a~~~~~~~~y~~~~ 380 (406)
T 2hy7_A 339 -ADSVIAAITQALEAPR---------V-RYRQCLNWSDTTDRVLDPRAYPETR 380 (406)
T ss_dssp -HHHHHHHHHHHHHCCC---------C-CCSCCCBHHHHHHHHHCGGGSGGGB
T ss_pred -HHHHHHHHHHHHhCcc---------h-hhhhcCCHHHHHHHHHHhhcccccC
Confidence 9999999999999876 1 234779999999999999 87653
|
| >1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-32 Score=262.91 Aligned_cols=347 Identities=11% Similarity=0.039 Sum_probs=231.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCc-EEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Ee--c-----------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT-KVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--A----------- 139 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~--~----------- 139 (477)
|||++++... .+ -..+..++++|.++|+ ++.++......... .......++.. ++ .
T Consensus 1 mkIl~v~~~~--~~-~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T 1vgv_A 1 MKVLTVFGTR--PE-AIKMAPLVHALAKDPFFEAKVCVTAQHREML------DQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (384)
T ss_dssp CEEEEEECSH--HH-HHHHHHHHHHHHHSTTCEEEEEECCSSGGGG------HHHHHHHTCCCSEECCCCSTTSCHHHHH
T ss_pred CeEEEEeccc--HH-HHHHHHHHHHHHhCCCCceEEEEcCCCHHHH------HHHHHHcCCCCCcceecCCCCccHHHHH
Confidence 6899987543 11 2446789999999994 88776543221111 01111122211 11 1
Q ss_pred ----cchhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc----cchhhHh-hc-ccccccceee
Q 011779 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH----YFKLDYV-KH-LPLVAGAMID 209 (477)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----~~~~~~~-~~-~~~~~~~~~~ 209 (477)
.....+.+..+||+||+|+.....+........ ...|++++.|+.... .+..... .. .+.++.+++.
T Consensus 72 ~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 148 (384)
T 1vgv_A 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFY---QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSP 148 (384)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHT---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcC
Confidence 112344566899999999752222222211111 124566777765311 1111111 22 2457788888
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhC-CCC-CCeEEEEEeecccC-CCH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVSRG-KGQ 285 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~il~vGrl~~~-Kg~ 285 (477)
+....+.+. .+|++.+++.+++||+ |...+.+.... .....+.++++++| +++ ++++++++||+.+. ||+
T Consensus 149 s~~~~~~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~ 222 (384)
T 1vgv_A 149 TETSRQNLL-----RENVADSRIFITGNTVIDALLWVRDQVM-SSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGF 222 (384)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTT-TCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHH
T ss_pred cHHHHHHHH-----HcCCChhhEEEeCChHHHHHHhhhhccc-cchhhhHHHHHhccccCCCCCEEEEEeCCccccchHH
Confidence 877776654 3577778899999995 33322211000 00011246778888 754 45788899999876 999
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+.+++|+.++.+ +.|+++|+++ |.++ .+.+.+++++.. .++|+|+|+. +++..+|+.||++|+
T Consensus 223 ~~li~a~~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~ 288 (384)
T 1vgv_A 223 EEICHALADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILT 288 (384)
T ss_dssp HHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEE
Confidence 999999999876 5578999886 4441 256666666542 3689996643 789999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|| |.+++|||++|+||| +++. ||..|++.++ +|+++++ | +++++++|.++++|++.+++|+
T Consensus 289 ~S-------g~~~lEA~a~G~PvI-------~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~ 350 (384)
T 1vgv_A 289 DS-------GGIQEEAPSLGKPVL-------VMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMS 350 (384)
T ss_dssp SS-------STGGGTGGGGTCCEE-------EESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHH
T ss_pred CC-------cchHHHHHHcCCCEE-------EccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhh
Confidence 98 234899999999999 8886 8899999888 9999987 6 9999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
++++++. +.|+|+++++.+.++|+++.+..
T Consensus 351 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 351 RAHNPYG-DGQACSRILEALKNNRISLGSHH 380 (384)
T ss_dssp SSCCTTC-CSCHHHHHHHHHHHTCCCC----
T ss_pred hccCCCc-CCCHHHHHHHHHHHHHHhhcccc
Confidence 9998765 67999999999999998876644
|
| >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-32 Score=262.58 Aligned_cols=337 Identities=12% Similarity=0.089 Sum_probs=225.2
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhC-C-cEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-E--ec--c---
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-G-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-I--SA--K--- 140 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~--~~--~--- 140 (477)
++.+|||++++...+.. .....+++.|.++ | ++|.+++...+.... .......++.+ + .. .
T Consensus 5 m~~~mkIl~v~~~~~~~---~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 75 (375)
T 3beo_A 5 MTERLKVMTIFGTRPEA---IKMAPLVLELQKHPEKIESIVTVTAQHRQML------DQVLSIFGITPDFDLNIMKDRQT 75 (375)
T ss_dssp CSSCEEEEEEECSHHHH---HHHHHHHHHHTTCTTTEEEEEEECCSSSHHH------HHHHHHHTCCCSEECCCCCTTCC
T ss_pred CCcCceEEEEecCcHHH---HHHHHHHHHHHhCCCCCCeEEEEcCCCHHHH------HHHHHHcCCCCccccccCCCccc
Confidence 44568999998654222 2456888888876 4 888777654332111 01111112221 1 10 0
Q ss_pred ----------chhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccccc----chhh-Hhhcc-cc
Q 011779 141 ----------GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHY----FKLD-YVKHL-PL 202 (477)
Q Consensus 141 ----------~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~----~~~~-~~~~~-~~ 202 (477)
....+.+..+||+||+|+.....+.. .+...+ .|++++.|+..... +... ....+ +.
T Consensus 76 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~-----ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T 3beo_A 76 LIDITTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQ-----IPVGHVEAGLRTWDKYSPYPEEMNRQLTGVM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTT-----CCEEEESCCCCCSCTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHC-----CCEEEEecccccccccCCChhHhhhhHHhhh
Confidence 12344566899999998753322221 112222 35555555442110 1111 11212 33
Q ss_pred cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecC-CchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc
Q 011779 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281 (477)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ng-vd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~ 281 (477)
++.+++.|....+.+. .+|++.+++.+++|| +|...+.+.... +.++++++ ++++++++++||+.+
T Consensus 151 ~d~ii~~s~~~~~~~~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~------~~~~~~~~--~~~~~vl~~~gr~~~ 217 (375)
T 3beo_A 151 ADLHFSPTAKSATNLQ-----KENKDESRIFITGNTAIDALKTTVKETY------SHPVLEKL--GNNRLVLMTAHRREN 217 (375)
T ss_dssp CSEEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHCCSSC------CCHHHHTT--TTSEEEEEECCCGGG
T ss_pred hheeeCCCHHHHHHHH-----HcCCCcccEEEECChhHhhhhhhhhhhh------hHHHHHhc--cCCCeEEEEeccccc
Confidence 6778888877776654 347777889999999 787665432111 12344554 356678889999987
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcC
Q 011779 282 G-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (477)
Q Consensus 282 ~-Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aD 358 (477)
. ||++.+++|+.++.+ +.|++++++ |.|+. ..+.+.+++++ +..++|+|+|+. .++..+|+.||
T Consensus 218 ~~K~~~~li~a~~~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad 284 (375)
T 3beo_A 218 LGEPMRNMFRAIKRLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSY 284 (375)
T ss_dssp TTHHHHHHHHHHHHHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCS
T ss_pred chhHHHHHHHHHHHHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCc
Confidence 5 999999999999866 557888655 65531 12344444442 223689997764 58999999999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccccc-CCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~-~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
++|+|| |.+++|||++|+||| +++ .||..|++.++ +|+++++ | +++++++|.++++|++.+
T Consensus 285 ~~v~~s-------g~~~lEA~a~G~Pvi-------~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~ 346 (375)
T 3beo_A 285 LMLTDS-------GGVQEEAPSLGVPVL-------VLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAH 346 (375)
T ss_dssp EEEECC-------HHHHHHHHHHTCCEE-------ECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHH
T ss_pred EEEECC-------CChHHHHHhcCCCEE-------EecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhH
Confidence 999987 567999999999999 886 48899998887 9999986 6 999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++|+++++++. +.|+|+++++.+.++++
T Consensus 347 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 347 DKMSKASNPYG-DGRASERIVEAILKHFN 374 (375)
T ss_dssp HHHCCCCCTTC-CSCHHHHHHHHHHHHTT
T ss_pred hhhhhcCCCCC-CCcHHHHHHHHHHHHhh
Confidence 99999998876 67999999999888763
|
| >1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=256.56 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=171.6
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
..++.+||||||.+.|.+......... .+.+|++++ ++++|+++||+.+.||++.+++|++++.+..++ -..+
T Consensus 218 ~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~---~~~~ 290 (482)
T 1uqt_A 218 AFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQ---HHGK 290 (482)
T ss_dssp EEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGG---GTTT
T ss_pred EEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCcc---ccCc
Confidence 357899999999998876432111111 456888886 578999999999999999999999999773221 0124
Q ss_pred eEEEEEecCCCcchH----HHHHHHHHHHhcC----CC--CcEEE-cccc--CCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 309 VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHF-VNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~--~~v~~-~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
++|+++|.+...+.+ +++++++++.+.+ .. ..|+| .|.+ +++..+|+.||+||+||. .||||+++
T Consensus 291 v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~--~EGfgLv~ 368 (482)
T 1uqt_A 291 IRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPL--RDGMNLVA 368 (482)
T ss_dssp EEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCS--SBSCCHHH
T ss_pred EEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCC--cccCCchH
Confidence 889999964322223 3455666655432 21 13665 5653 889999999999999999 99999999
Q ss_pred HHHHHcCC-----CEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Q 011779 376 IEAMAFQL-----PVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVK 449 (477)
Q Consensus 376 lEAma~G~-----PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~ 449 (477)
+||||||+ ||| +++.+|..+.+ .+|++++|.| +++++++|.++++ +++.++++++++++.+.
T Consensus 369 lEAmA~g~~~~~gpvV-------~S~~~G~~~~l---~~g~lv~p~d--~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~ 436 (482)
T 1uqt_A 369 KEYVAAQDPANPGVLV-------LSQFAGAANEL---TSALIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIV 436 (482)
T ss_dssp HHHHHHSCTTSCCEEE-------EETTBGGGGTC---TTSEEECTTC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCEE-------EECCCCCHHHh---CCeEEECCCC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999997 899 99988887777 2899999999 9999999999998 57789999999999985
Q ss_pred HhcCHHHHHHHHHHHHHHH
Q 011779 450 EIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 450 ~~fs~~~~~~~~~~~~~~~ 468 (477)
+ |||+.+++++++.|+++
T Consensus 437 ~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 437 K-NDINHWQECFISDLKQI 454 (482)
T ss_dssp H-TCHHHHHHHHHHHHHHS
T ss_pred h-CCHHHHHHHHHHHHHhc
Confidence 5 99999999999999876
|
| >3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=254.71 Aligned_cols=305 Identities=14% Similarity=0.107 Sum_probs=210.9
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecc--------ccc--ch------h--------------hHhh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--------GHY--FK------L--------------DYVK 198 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~--------~~~--~~------~--------------~~~~ 198 (477)
.+|||+|+|....+..+..+... .+ ..+.++++|... +.. +. . ..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~~--~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-RI--DVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-TC--SCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-CC--CCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 45999999987666554443322 32 268899999863 211 00 0 0112
Q ss_pred cccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhh-HHHHHHHHHH----HH----hhCCC-C
Q 011779 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDN-VAKRVLREHV----RE----SLGVR-N 268 (477)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~-~~~~~~~~~~----r~----~~~~~-~ 268 (477)
....++.++++|..++..+.. .++.+...+ ||||+|.+.|.+.... ..+...++.+ |. .++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 235788899999998887775 345455433 9999999998774221 1112223333 22 22555 3
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcch-------------------------
Q 011779 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT------------------------- 322 (477)
Q Consensus 269 ~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~------------------------- 322 (477)
+.++|..+||+. .+||+|.+++|+.+|...++..+.+..-+.|+++..+.....
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 446666689999 689999999999999887765332345578888876532200
Q ss_pred -------------------H----------------------------------------HHHHHHHHHHhcCCCCc---
Q 011779 323 -------------------K----------------------------------------FESELRNYVMQKKIQDR--- 340 (477)
Q Consensus 323 -------------------~----------------------------------------~~~~l~~~~~~~~l~~~--- 340 (477)
| ..+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 0 11223334455666555
Q ss_pred ---EEEcc-cc--------CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-
Q 011779 341 ---VHFVN-KT--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG- 407 (477)
Q Consensus 341 ---v~~~g-~~--------~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~- 407 (477)
|+|.+ +. .++.++|+.||++|+||. +|+||++++||||||+||| +++.||+.|++.++
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI-------~s~~gG~~d~V~dg~ 561 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSI-------TTNVSGFGSYMEDLI 561 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEE-------EETTBHHHHHHHTTS
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEE-------EeCCCChhhhhhccc
Confidence 56665 32 368999999999999999 9999999999999999999 99999999998875
Q ss_pred ------CceeeecCC-CCCHHHHHHHHHHHH----h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q 011779 408 ------TTGLLHPVG-KEGITPLAKNIVKLA----T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 408 ------~~G~l~~~~-d~~~~~la~~i~~ll----~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
.+|+++++. +.++++++++|.+++ . ++..+..|++++++.+ +.|+|++++++|+++|++++.+.
T Consensus 562 ~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 562 ETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp CHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhc
Confidence 369988542 122666665555555 3 7888999999998766 67999999999999999998654
|
| >2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=230.60 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=165.2
Q ss_pred EecCCchhhhh--hhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHH--HHHHhhccCcCce
Q 011779 235 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 309 (477)
Q Consensus 235 i~ngvd~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~--~~~~~~~~~~~~~ 309 (477)
||||+|.+.|. +... .....+..+|+++|++++ .+|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~--~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCS--CHHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhcccccccc--chhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 79999999987 6431 011224678999999755 4889999999 9999999999999985 4 55899
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEE-ccccC--CHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEE
Q 011779 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (477)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~-~g~~~--~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI 386 (477)
+|+|+|.+.+ .+.+.+++++++++ +|+| +|+++ ++..+|+.||++|+||. .|+||++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999821 27888999999886 8999 99985 89999999999999999 8999999999999999999
Q ss_pred eeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcC
Q 011779 387 LQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 387 ~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 453 (477)
+++.|+..+++ ++.+|++++++| +++++++|.++++ |++.+++|++++++.+++ ||
T Consensus 144 -------~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 -------ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp -------EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred -------EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 999999999988 9999999999999 999999999999999987 86
|
| >2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=239.08 Aligned_cols=309 Identities=8% Similarity=0.028 Sum_probs=214.1
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcE--E-Eecc---chhhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISAK---GQETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~--v-~~~~---~~~~~~~~ 148 (477)
.+|++.+.+. |..+.+..|+++|.++| +|.+.+...... . ...... .++. + ++.. ..+++.+.
T Consensus 41 ~~iwih~~s~---G~~~~~~~L~~~L~~~~-~v~v~~~~~~~~-~-----~~~~~~-~~v~~~~~~p~~~~~~l~~~l~~ 109 (374)
T 2xci_A 41 GALWVHTASI---GEFNTFLPILKELKREH-RILLTYFSPRAR-E-----YLKTKS-DFYDCLHPLPLDNPFSVKRFEEL 109 (374)
T ss_dssp TCEEEECSSH---HHHHHHHHHHHHHHHHS-CEEEEESCGGGH-H-----HHHTTG-GGCSEEEECCCSSHHHHHHHHHH
T ss_pred CCEEEEcCCH---HHHHHHHHHHHHHHhcC-CEEEEEcCCcHH-H-----HHHHhc-ccccceeECCCCCHHHHHHHHHH
Confidence 3576666333 66788999999999998 887666432211 1 011111 2333 2 2221 23466677
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccC
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 228 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 228 (477)
.+||+||++.......+..... . +++...+.... ...+...++.++.+++.|....+.+.+ +|++
T Consensus 110 ~~pDiv~~~~~~~~~~~~~~~~-~------p~~~~~~~~~~---~~~~~~~~~~~d~ii~~S~~~~~~l~~-----~g~~ 174 (374)
T 2xci_A 110 SKPKALIVVEREFWPSLIIFTK-V------PKILVNAYAKG---SLIEKILSKKFDLIIMRTQEDVEKFKT-----FGAK 174 (374)
T ss_dssp HCCSEEEEESCCCCHHHHHHCC-S------CEEEEEECCCC---CHHHHHHHTTCSEEEESCHHHHHHHHT-----TTCC
T ss_pred hCCCEEEEECccCcHHHHHHHh-C------CEEEEEeecCc---hHHHHHHHHhCCEEEECCHHHHHHHHH-----cCCC
Confidence 8999999864322111111111 1 23322222211 113344567788999999888877653 4665
Q ss_pred CCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCc
Q 011779 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (477)
Q Consensus 229 ~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~ 308 (477)
++.+++|+. |.+...+ ++. + +.+++++.|+ ..||++.+++|++++.+ ++|+
T Consensus 175 --ki~vi~n~~----f~~~~~~----------~~~--l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~ 225 (374)
T 2xci_A 175 --RVFSCGNLK----FICQKGK----------GIK--L--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSS 225 (374)
T ss_dssp --SEEECCCGG----GCCCCCS----------CCC--C--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTT
T ss_pred --eEEEcCCCc----cCCCcCh----------hhh--h--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCC
Confidence 899999973 2111100 000 1 1245666664 46899999999999876 6789
Q ss_pred eEEEEEecCCCcchHHH-HHHHHHHHhcCCC--------CcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHH
Q 011779 309 VHAVIIGSDMNAQTKFE-SELRNYVMQKKIQ--------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~-~~l~~~~~~~~l~--------~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
++|+|+|+| +.+ ++++++++++++. ++|.+.|..+|+..+|+.||++++||.. .|++|++++|||
T Consensus 226 ~~lvivG~g-----~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAm 299 (374)
T 2xci_A 226 LKLILVPRH-----IENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPT 299 (374)
T ss_dssp CEEEEEESS-----GGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHH
T ss_pred cEEEEECCC-----HHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHH
Confidence 999999998 444 5889999998886 5789999889999999999998888752 578899999999
Q ss_pred HcCCCEEeeccccccc-cCCCceEEeecC-CceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH
Q 011779 380 AFQLPVLLQKCLYQGT-AAGGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 454 (477)
Q Consensus 380 a~G~PvI~~~~~~~~~-~~gg~~e~v~~~-~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 454 (477)
|+|+||| ++ +.++.+|++.+. .+|++++++| +++|+++|.++++| +.+++|++++++.++++++.
T Consensus 300 A~G~PVI-------~~~~~~~~~e~~~~~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 300 CWGIPVI-------YGPYTHKVNDLKEFLEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp TTTCCEE-------ECSCCTTSHHHHHHHHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCEE-------ECCCccChHHHHHHHHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 9999999 75 778889988663 5789999988 99999999999999 99999999999999776554
|
| >3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=211.51 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=140.2
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--
Q 011779 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 347 (477)
Q Consensus 270 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~-- 347 (477)
+++|+++||+.+.||++.+++|+..+. +.++++|+|+|+| +..+.++++++++++ +|.| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKG-----PDEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCS-----TTHHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCC-----ccHHHHHHHHHHcCC--eEEE-eecCH
Confidence 578999999999999999999999873 3489999999998 578889999999987 8899 985
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCC-CEEeecccccc-ccCCCceEEeecCCceeeecCCCCCHHHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLLQKCLYQG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAK 425 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~-PvI~~~~~~~~-~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~ 425 (477)
+++..+|+.||++|+||. .|+||++++|||++|+ ||| + ++.|+..+++.++ +.+++++| ++++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi-------~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~~ 132 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVI-------ANSPLSATRQFALDE--RSLFEPNN--AKDLSA 132 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEE-------ECCTTCGGGGGCSSG--GGEECTTC--HHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEE-------eeCCCCchhhhccCC--ceEEcCCC--HHHHHH
Confidence 789999999999999999 9999999999999998 999 8 5688899999664 45888888 999999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011779 426 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 460 (477)
Q Consensus 426 ~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~ 460 (477)
+|.++++|++.++++++++++.+ ++|||++++++
T Consensus 133 ~i~~l~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 133 KIDWWLENKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH-HHHC-------
T ss_pred HHHHHHhCHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 99999999999999999999988 78999998764
|
| >3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=232.48 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=210.8
Q ss_pred CCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-----c----hhhHhhcccccccceeeehhhHHHHHHH
Q 011779 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----F----KLDYVKHLPLVAGAMIDSHVTAEYWKNR 220 (477)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (477)
.-|+|.+|........ .+++...|. .++.+.+|...+.. . .....+.+-.+|.+...+...+..+.+.
T Consensus 149 ~~D~VwVhDYhL~llp-~~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVP-ALLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHH-HHHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHH-HHHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 5789999986655433 334444443 47888888753321 1 1223344456677777776666665555
Q ss_pred hHhhh-ccCC-------------CCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHH
Q 011779 221 TRERL-RIKM-------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (477)
Q Consensus 221 ~~~~~-~~~~-------------~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~ 286 (477)
....+ |.+. .++.++|+|||.+.|.+.... .++.+|++++ ++.+|+++||+.+.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~-----~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQ-----LPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CC-----CCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHH-----HHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 44444 3221 267899999999998765321 1256778887 578999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCcCc---eEEEEEecCCCcchH----HHHHHHHHHHhcC----CCCcEEEcccc--CCHHHH
Q 011779 287 LFLHSFYESLELIKEKKLEVPS---VHAVIIGSDMNAQTK----FESELRNYVMQKK----IQDRVHFVNKT--LTVAPY 353 (477)
Q Consensus 287 ~ll~a~~~l~~~~~~~~~~~~~---~~l~ivG~g~~~~~~----~~~~l~~~~~~~~----l~~~v~~~g~~--~~l~~~ 353 (477)
.+++|+ ++.+ ++|+ +.|+++|.....+.+ +++++++++.+.+ .. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~-------~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAA-------RGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHH-------HTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHH-------hCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 8877 4454 678888753322223 3455555555442 22 69999974 789999
Q ss_pred HHhcCEEEEcCCCCCCcccHHHHHHHHcC---CCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHH
Q 011779 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 430 (477)
Q Consensus 354 ~~~aDv~v~pS~~~~E~~g~~~lEAma~G---~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~l 430 (477)
|+.||++|+||. .||||++++|||||| .|+| .|+.+|..+.+ +.+|++++|.| ++++|++|.++
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lV-------lSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~a 435 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVI-------LSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAA 435 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEE-------EETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEE-------EeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHH
Confidence 999999999999 999999999999997 8999 99999988877 45799999999 99999999999
Q ss_pred Hh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 431 AT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 431 l~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++ +++.++++.++.++++ ..++...+++.+++-++..-
T Consensus 436 L~m~~~er~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 436 LAAGPRQRAEAAARRRDAA-RPWTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TTCBHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHhhcc
Confidence 99 5678888899999988 56999999999998887763
|
| >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=233.49 Aligned_cols=330 Identities=13% Similarity=0.050 Sum_probs=213.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Eecc-----------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAK----------- 140 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~----------- 140 (477)
||||++++...+.. .....++++|.+. ||+|.+++..... .. ........++.. +...
T Consensus 5 mmkIl~v~~~~~~~---~~~~~l~~~L~~~~g~~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (376)
T 1v4v_A 5 MKRVVLAFGTRPEA---TKMAPVYLALRGIPGLKPLVLLTGQHR--EQ----LRQALSLFGIQEDRNLDVMQERQALPDL 75 (376)
T ss_dssp CEEEEEEECSHHHH---HHHHHHHHHHHTSTTEEEEEEECSSCH--HH----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred ceEEEEEEeccHHH---HHHHHHHHHHHhCCCCceEEEEcCCcH--HH----HHHHHHHcCCCcccccccCCCCccHHHH
Confidence 48999999654222 2356889999998 8998877643221 10 111112233322 1111
Q ss_pred ------chhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccccc----hh-hHhhc-ccccccc
Q 011779 141 ------GQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYF----KL-DYVKH-LPLVAGA 206 (477)
Q Consensus 141 ------~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~-~~~~~-~~~~~~~ 206 (477)
....+.+..+||+||+|......+. ..+...+ .|++...++...... .. ..... ....+.+
T Consensus 76 ~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~-----ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (376)
T 1v4v_A 76 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEG-----IPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLD 150 (376)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTT-----CCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhC-----CCEEEEeCCCccccccCCCchHHHHHHHHHHhcee
Confidence 1234456689999999875332222 1222222 344433332211110 01 11111 2345666
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~ 285 (477)
++.+....+.+. .+|++.+++.+++|++ |...+... +..++++++ +++++++++||+...||+
T Consensus 151 ~~~s~~~~~~l~-----~~g~~~~ki~vi~n~~~d~~~~~~~---------~~~~~~~~~--~~~~vl~~~gr~~~~k~~ 214 (376)
T 1v4v_A 151 FAPTPLAKANLL-----KEGKREEGILVTGQTGVDAVLLAAK---------LGRLPEGLP--EGPYVTVTMHRRENWPLL 214 (376)
T ss_dssp EESSHHHHHHHH-----TTTCCGGGEEECCCHHHHHHHHHHH---------HCCCCTTCC--SSCEEEECCCCGGGGGGH
T ss_pred eCCCHHHHHHHH-----HcCCCcceEEEECCchHHHHhhhhh---------hhHHHHhcC--CCCEEEEEeCcccchHHH
Confidence 777776666554 3477778899999975 32221110 112333343 456778889999888899
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~ 362 (477)
+.+++|++++.+ ++|+++++++ |++. ..++.+++++.. .++|+|+|+. .++..+|+.||++|.
T Consensus 215 ~~ll~a~~~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~ 280 (376)
T 1v4v_A 215 SDLAQALKRVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVT 280 (376)
T ss_dssp HHHHHHHHHHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEE
Confidence 999999999866 5578898886 7651 256777776542 3689999542 389999999999999
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 441 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~ 441 (477)
|| + |+ ++|||++|+||| ++ +.|+..+++.++ +|++++. | +++++++|.++++|++.+++|+
T Consensus 281 ~S----~--g~-~lEA~a~G~PvI-------~~~~~~~~~~~~~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~ 342 (376)
T 1v4v_A 281 DS----G--GL-QEEGAALGVPVV-------VLRNVTERPEGLKAG-ILKLAGT-D--PEGVYRVVKGLLENPEELSRMR 342 (376)
T ss_dssp SC----H--HH-HHHHHHTTCCEE-------ECSSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHTCHHHHHHHH
T ss_pred CC----c--CH-HHHHHHcCCCEE-------eccCCCcchhhhcCC-ceEECCC-C--HHHHHHHHHHHHhChHhhhhhc
Confidence 87 2 44 889999999999 76 568888877655 8999863 5 9999999999999999999998
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 442 KRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 442 ~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+++ +.|.+...++++.+.+.+++.
T Consensus 343 ~~~-----~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 343 KAK-----NPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp HSC-----CSSCCSCHHHHHHHHHHHHTT
T ss_pred ccC-----CCCCCChHHHHHHHHHHHHhc
Confidence 643 457777788888888888765
|
| >2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=200.61 Aligned_cols=153 Identities=22% Similarity=0.278 Sum_probs=134.9
Q ss_pred hCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHH--hcCCCCcE
Q 011779 264 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 341 (477)
Q Consensus 264 ~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~--~~~l~~~v 341 (477)
+.++.++++|+++|++.+.||++.+++++.++ ++++|+|+|.+. ..+.++++++ +++++++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~-----~~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFS-----KGDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCC-----TTSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCc-----cHHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999976 689999999984 4456778888 77888999
Q ss_pred EEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCC
Q 011779 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419 (477)
Q Consensus 342 ~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~ 419 (477)
.|+|++ +++..+|+.||++|+||. .|+||++++|||++|+||| +++.|+..|++.++.+|+++ ++|
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI-------~~~~~~~~e~i~~~~~g~~~-~~d-- 148 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVI-------AVNEGGFKETVINEKTGYLV-NAD-- 148 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEE-------EESSHHHHHHCCBTTTEEEE-CSC--
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEE-------EeCCCCHHHHhcCCCccEEe-CCC--
Confidence 999997 449999999999999999 9999999999999999999 99999999999999999999 777
Q ss_pred HHHHHHHHHHHHhCHHH-HHHHHHHH
Q 011779 420 ITPLAKNIVKLATHVER-RLTMGKRG 444 (477)
Q Consensus 420 ~~~la~~i~~ll~~~~~-~~~~~~~a 444 (477)
+++++++|.++++|++. ++++++++
T Consensus 149 ~~~l~~~i~~l~~~~~~~~~~~~~~a 174 (177)
T 2f9f_A 149 VNEIIDAMKKVSKNPDKFKKDCFRRA 174 (177)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999998875 44444433
|
| >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-22 Score=192.44 Aligned_cols=337 Identities=13% Similarity=0.107 Sum_probs=208.9
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcE---EEec--------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ---VISA-------- 139 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~---v~~~-------- 139 (477)
|+||||++++..-+ |. ..+..+.++|+++ |+++.++....... . ....+...++. -+..
T Consensus 23 ~~m~ki~~v~Gtr~--~~-~~~a~li~~l~~~~~~~~~~~~tG~h~~--~----~~~~~~~~~i~~~~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 23 NAMKKVLIVFGTRP--EA-IKMAPLVQQLCQDNRFVAKVCVTGQHRE--M----LDQVLELFSITPDFDLNIMEPGQTLN 93 (396)
T ss_dssp -CCEEEEEEECSHH--HH-HHHHHHHHHHHHCTTEEEEEEECCSSSH--H----HHHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCCCeEEEEEeccH--hH-HHHHHHHHHHHhCCCCcEEEEEecccHH--H----HHHHHHhcCCCCceeeecCCCCCCHH
Confidence 56789999995432 22 4467899999887 78987555332211 0 11111222331 1111
Q ss_pred -------cchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeecccc----cchhhHhhc--ccccc
Q 011779 140 -------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGH----YFKLDYVKH--LPLVA 204 (477)
Q Consensus 140 -------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~----~~~~~~~~~--~~~~~ 204 (477)
.....+.+..+||+|+++......+. ..+...++ |++...++...+ .+.....+. .+..+
T Consensus 94 ~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~I-----Pv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~ 168 (396)
T 3dzc_A 94 GVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQI-----PVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQ 168 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTC-----CEEEETCCCCCSCTTSSTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCC-----CEEEEECCccccccccCCcHHHHHHHHHHhcC
Confidence 11135556789999999875443322 22233333 443322222111 111222222 23456
Q ss_pred cceeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhC-CCC-CCeEEEEEeecc-
Q 011779 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVS- 280 (477)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~il~vGrl~- 280 (477)
.+++.+....+.+. ..|++++++.+++|++ |...+.+.. .......++++++++| +++ +++++++.+|..
T Consensus 169 ~~~~~se~~~~~l~-----~~G~~~~ki~vvGn~~~d~~~~~~~~-~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~ 242 (396)
T 3dzc_A 169 YHFAPTDTSRANLL-----QENYNAENIFVTGNTVIDALLAVREK-IHTDMDLQATLESQFPMLDASKKLILVTGHRRES 242 (396)
T ss_dssp EEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHH-HHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCC
T ss_pred EEECCCHHHHHHHH-----HcCCCcCcEEEECCcHHHHHHHhhhh-cccchhhHHHHHHHhCccCCCCCEEEEEECCccc
Confidence 66677776666654 4588888999999865 322221111 0000111467889999 454 445555555643
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 281 ~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
..|+++.+++|+.++.+ ++|++++++. |.++ ..++.+++. .+..++|.++++. .++..+|+.|
T Consensus 243 ~~~~~~~ll~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~a 308 (396)
T 3dzc_A 243 FGGGFERICQALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRA 308 (396)
T ss_dssp CTTHHHHHHHHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhc
Confidence 35889999999999876 5688999885 5541 234445443 2344689998775 5788999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|.+|- |+. +|||++|+||| ++ +.++..|++.+| .+++++. | .+++++++.++++|++.
T Consensus 309 d~vv~~SG------g~~-~EA~a~G~PvV-------~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~ 370 (396)
T 3dzc_A 309 HIILTDSG------GIQ-EEAPSLGKPVL-------VMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQA 370 (396)
T ss_dssp SEEEESCS------GGG-TTGGGGTCCEE-------ECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHH
T ss_pred CEEEECCc------cHH-HHHHHcCCCEE-------EccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHH
Confidence 99998872 443 89999999999 77 778888888777 5677764 5 89999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++|++++.. |.....++++.+++
T Consensus 371 ~~~m~~~~~~-----~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 371 YQAMSQAHNP-----YGDGKACQRIADIL 394 (396)
T ss_dssp HHHHHTSCCT-----TCCSCHHHHHHHHH
T ss_pred HHHHhhccCC-----CcCChHHHHHHHHH
Confidence 9999886543 55555666665554
|
| >3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=192.82 Aligned_cols=165 Identities=12% Similarity=0.096 Sum_probs=129.7
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++++++++.|++. .++.+.+.++++.+.+ .++++++++++.. ..+.++ +++++|.|.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~----~~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSL----DVSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSC----CCTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCC----Chhhhc------cCCCcEEEeCCC
Confidence 4567788889986 7888888888777643 3567777666532 111111 346799999998
Q ss_pred CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCHHHH
Q 011779 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGITPL 423 (477)
Q Consensus 348 ~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~~~l 423 (477)
++..+|+.||++|.++. +.+++|||++|+|+| +.+.+ +..+.+.+..+|+++++++.+++++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v-------~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l 366 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQL-------SFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSV 366 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEE-------ecCCchhHHHHHHHHHHcCCEEecCcccCCHHHH
Confidence 89999999999996653 579999999999999 65554 3677787888999999873349999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+++|.++++|++.+++|++++++.. +.++++++++.+++++.+
T Consensus 367 ~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 367 SGAAKRLLAEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999998876 568999999999888754
|
| >3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=187.18 Aligned_cols=327 Identities=14% Similarity=0.077 Sum_probs=194.7
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------- 141 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~---------- 141 (477)
|++||++.... +||. .-...++++|.++||+|.+++...+-. ...+...|+++..++.
T Consensus 1 M~~~i~i~~GG---TgGHi~palala~~L~~~g~~V~~vg~~~g~e--------~~~v~~~g~~~~~i~~~~~~~~~~~~ 69 (365)
T 3s2u_A 1 MKGNVLIMAGG---TGGHVFPALACAREFQARGYAVHWLGTPRGIE--------NDLVPKAGLPLHLIQVSGLRGKGLKS 69 (365)
T ss_dssp --CEEEEECCS---SHHHHHHHHHHHHHHHHTTCEEEEEECSSSTH--------HHHTGGGTCCEEECC-----------
T ss_pred CCCcEEEEcCC---CHHHHHHHHHHHHHHHhCCCEEEEEECCchHh--------hchhhhcCCcEEEEECCCcCCCCHHH
Confidence 45688876532 1333 447889999999999999998654421 1112233443322110
Q ss_pred --------------hhhHHHhcCCcEEEEcCcchhh-HHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccc
Q 011779 142 --------------QETINTALKADLIVLNTAVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGA 206 (477)
Q Consensus 142 --------------~~~~~~~~~~DiV~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~ 206 (477)
...+.+..+||+|+++....+. ...++...++| ++ +|+..... ....+...++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP-----~v--ihe~n~~~-G~~nr~l~~~a~~v 141 (365)
T 3s2u_A 70 LVKAPLELLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVP-----LV--IHEQNAVA-GTANRSLAPIARRV 141 (365)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCC-----EE--EEECSSSC-CHHHHHHGGGCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCC-----EE--EEecchhh-hhHHHhhcccccee
Confidence 1244567899999998754433 22333444443 33 56543221 11111112333333
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEE-EEEeecccCCCH
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINSVSRGKGQ 285 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-l~vGrl~~~Kg~ 285 (477)
+...... + ....++.++.|++..+.+... +.+.+++++++.+ ++.|++...+..
T Consensus 142 ~~~~~~~-----------~-~~~~k~~~~g~pvr~~~~~~~-------------~~~~~~~~~~~~ilv~gGs~g~~~~~ 196 (365)
T 3s2u_A 142 CEAFPDT-----------F-PASDKRLTTGNPVRGELFLDA-------------HARAPLTGRRVNLLVLGGSLGAEPLN 196 (365)
T ss_dssp EESSTTS-----------S-CC---CEECCCCCCGGGCCCT-------------TSSCCCTTSCCEEEECCTTTTCSHHH
T ss_pred eeccccc-----------c-cCcCcEEEECCCCchhhccch-------------hhhcccCCCCcEEEEECCcCCccccc
Confidence 3222111 1 134567888888887765332 1234455555544 445677777777
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcC
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS 364 (477)
+.+.+++..+.. . .+++++ ++|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|..+
T Consensus 197 ~~~~~al~~l~~-------~-~~~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra 260 (365)
T 3s2u_A 197 KLLPEALAQVPL-------E-IRPAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA 260 (365)
T ss_dssp HHHHHHHHTSCT-------T-TCCEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC
T ss_pred hhhHHHHHhccc-------c-cceEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC
Confidence 777888776532 1 344444 44544 34556666666654 6788899999999999999999433
Q ss_pred CCCCCcccHHHHHHHHcCCCEEeeccccccccC--CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 365 QAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 365 ~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~--gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
.+.++.|+|++|+|+|..++++ +.+. -...+.+.+...|.+++..+.+++.|+++|.++++||+.+++|++
T Consensus 261 ------G~~Tv~E~~a~G~P~Ilip~p~-~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~ 333 (365)
T 3s2u_A 261 ------GALTVSELTAAGLPAFLVPLPH-AIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMAD 333 (365)
T ss_dssp ------CHHHHHHHHHHTCCEEECC------CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred ------CcchHHHHHHhCCCeEEeccCC-CCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 3789999999999999554443 2211 012344556668899987776789999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
++++... ....+++++.++++.+.
T Consensus 334 ~a~~~~~-~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 334 QARSLAK-PEATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHTCC-TTHHHHHHHHHHHHC--
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHcc
Confidence 9987553 34555566655555444
|
| >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-21 Score=185.88 Aligned_cols=337 Identities=14% Similarity=0.127 Sum_probs=206.4
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE---Eec------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV---ISA------ 139 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~------ 139 (477)
.|+||||++++..-+ +. ..+..+.++|.+. |+++.++........ ....+...++.. +.+
T Consensus 24 ~m~~~kI~~v~Gtr~--~~-~~~a~li~~l~~~~~~~~~~~~~tG~h~~m------~~~~~~~~~i~~~~~l~v~~~~~~ 94 (403)
T 3ot5_A 24 AMAKIKVMSIFGTRP--EA-IKMAPLVLALEKEPETFESTVVITAQHREM------LDQVLEIFDIKPDIDLDIMKKGQT 94 (403)
T ss_dssp --CCEEEEEEECSHH--HH-HHHHHHHHHHHTCTTTEEEEEEECC-----------CHHHHHHTTCCCSEECCCCC-CCC
T ss_pred ccccceEEEEEecCh--hH-HHHHHHHHHHHhCCCCCcEEEEEecCcHHH------HHHHHHhcCCCCCcccccCCCCCC
Confidence 466789999995432 21 3457899999987 689875553321100 011112223210 111
Q ss_pred ---------cchhhHHHhcCCcEEEEcCcchhhHH--HHHhhhCCCccccceeeeeeeccc-cc---chhh-Hhhccc-c
Q 011779 140 ---------KGQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRG-HY---FKLD-YVKHLP-L 202 (477)
Q Consensus 140 ---------~~~~~~~~~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~-~~---~~~~-~~~~~~-~ 202 (477)
.....+.+..+||+|+++......+. ..+...++ |++....+... .. +... .+.... .
T Consensus 95 ~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~I-----Pv~h~~aglrs~~~~~~~p~~~~r~~~~~~ 169 (403)
T 3ot5_A 95 LAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQK-----MLGHVEAGLRTWNKYSPFPEEMNRQLTGVM 169 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTC-----EEEEESCCCCCSCTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCC-----CEEEEECCccccccccCCcHHHHHHHHHHh
Confidence 11135556789999999875333222 22233333 44322222111 11 1111 122222 3
Q ss_pred cccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeeccc
Q 011779 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 281 (477)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~ 281 (477)
.+.+++.+....+.+. ..|++++++.++.|+. |...+.+.... +.+.++++ ++++++++++||...
T Consensus 170 a~~~~~~se~~~~~l~-----~~Gi~~~~i~vvGn~~~D~~~~~~~~~~------~~~~~~~l--~~~~~vlv~~~r~~~ 236 (403)
T 3ot5_A 170 ADIHFSPTKQAKENLL-----AEGKDPATIFVTGNTAIDALKTTVQKDY------HHPILENL--GDNRLILMTAHRREN 236 (403)
T ss_dssp CSEEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHSCTTC------CCHHHHSC--TTCEEEEECCCCHHH
T ss_pred cCEEECCCHHHHHHHH-----HcCCCcccEEEeCCchHHHHHhhhhhhc------chHHHHhc--cCCCEEEEEeCcccc
Confidence 4555666666666655 4588888999998854 44333221100 12344455 455666777777644
Q ss_pred -CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhc
Q 011779 282 -GKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 357 (477)
Q Consensus 282 -~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~a 357 (477)
.|+++.+++|+.++.+ ++|++++++. |.++ ..++.+++. ++..++|.++++. .++..+|+.|
T Consensus 237 ~~~~l~~ll~a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~a 302 (403)
T 3ot5_A 237 LGEPMQGMFEAVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKS 302 (403)
T ss_dssp HTTHHHHHHHHHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHE
T ss_pred cCcHHHHHHHHHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhc
Confidence 5789999999999876 5688999887 4441 134444433 2344689999986 4899999999
Q ss_pred CEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHH
Q 011779 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 358 Dv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~ 436 (477)
|++|.+| |.+.+|||++|+|+| +. +.++..|.+..| +|++++. | .+++++++.++++|++.
T Consensus 303 d~vv~~S-------Gg~~~EA~a~g~PvV-------~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~ 364 (403)
T 3ot5_A 303 YLVFTDS-------GGVQEEAPGMGVPVL-------VLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKES 364 (403)
T ss_dssp EEEEECC-------HHHHHHGGGTTCCEE-------ECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHH
T ss_pred CEEEECC-------ccHHHHHHHhCCCEE-------EecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHH
Confidence 9999776 234499999999999 77 678878887665 8888875 5 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 437 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 437 ~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
+++|++++.. |.....++++.+.+.+.+..
T Consensus 365 ~~~m~~~~~~-----~g~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 365 HDKMAQAANP-----YGDGFAANRILAAIKSHFEE 394 (403)
T ss_dssp HHHHHHSCCT-----TCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHhhcCc-----ccCCcHHHHHHHHHHHHhCC
Confidence 9999876543 55555666666666666553
|
| >4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=189.27 Aligned_cols=162 Identities=11% Similarity=0.091 Sum_probs=109.5
Q ss_pred CCCeEEEEEeecccCC----------CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCC
Q 011779 268 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (477)
Q Consensus 268 ~~~~~il~vGrl~~~K----------g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (477)
+++.+++++|++...| .++.+++++.+ .++++++++++ +..+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~-----~~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSD-----KLAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCC-----cchhhhc------cC
Confidence 4567888889997555 34555555443 35788888877 2333332 34
Q ss_pred CCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCC
Q 011779 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGK 417 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d 417 (477)
+++|.+.|+. ++..+|+.||++|. ++.+.+++|||++|+|+|+. |. ..+..+..+.+.+...|+++++++
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~------~gG~~t~~Ea~~~G~P~v~~--p~-~~~q~~~a~~~~~~g~g~~~~~~~ 352 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVH------HGGHGTTLTCLSEGVPQVSV--PV-IAEVWDSARLLHAAGAGVEVPWEQ 352 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEE------CCCHHHHHHHHHTTCCEEEC--CC-SGGGHHHHHHHHHTTSEEECC---
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEe------cCCHHHHHHHHHhCCCEEec--CC-chhHHHHHHHHHHcCCEEecCccc
Confidence 6899999997 68999999999994 44478999999999999921 11 145556777788888999998874
Q ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 011779 418 EGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 463 (477)
Q Consensus 418 ~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 463 (477)
.++++++++|.++++|++.+++|++.+++.. +..+++++++.+++
T Consensus 353 ~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 353 AGVESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp ----CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 3489999999999999999999999888765 66899988887653
|
| >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=181.71 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=122.3
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++.++++++|++. .++.+.+.+++..+. +.+++++ +++|++. ..+.++ .++++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~--------~~~~~~~~~~~G~~~-----~~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRAFG--------NLPGWHLVLQIGRKV-----TPAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHHHT--------TCTTEEEEEECC--------CGGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHHHh--------cCCCeEEEEEeCCCC-----ChHHhc------cCCCCeEEEec
Confidence 4557888899988 556555555554442 2246787 5778773 222221 24579999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+. ++|+.||++|..+. +++++|||++|+|+| +.+.++ ..+.+.+...|++++.++.++++
T Consensus 291 ~~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i-------~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~ 356 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHAG------AGGSQEGLATATPMI-------AVPQAVDQFGNADMLQGLGVARKLATEEATADL 356 (430)
T ss_dssp CCHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHH
T ss_pred CCHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEE-------ECCCccchHHHHHHHHHcCCEEEcCCCCCCHHH
Confidence 8777 89999999997553 479999999999999 766544 45666677789999877434899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
++++|.++++|++.++++++.+++.. +.++++++++.+++++++..
T Consensus 357 l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 357 LRETALALVDDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhhccc
Confidence 99999999999999999999988766 45799999999988876553
|
| >3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=174.41 Aligned_cols=288 Identities=11% Similarity=0.045 Sum_probs=189.9
Q ss_pred CchhhHHHHHHHHHHhCCcEEEEEecCCC--CChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEEEEcCcchh-h
Q 011779 87 SGGPLLLMELAFLLRGVGTKVNWITIQKP--SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG-K 163 (477)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV~~~~~~~~-~ 163 (477)
.++.+.-.+..+-+.+.|++..-+..... .... .+...+. + .+....++|+|++++|... .
T Consensus 25 ~a~~ka~~dv~~i~~~~G~~~l~~~~~~~~~~~~~----~~~~~~~--~----------~~~~~~~~DvIi~q~P~~~~~ 88 (339)
T 3rhz_A 25 STAQLCQNTVTDVAVSLGYRELGIYCYQIHTDSES----ELSKRLD--G----------IVAGLRHGDVVIFQTPTWNTT 88 (339)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEECCCGGGSCHH----HHHHHHH--H----------HTTTCCTTCEEEEEECCSSCH
T ss_pred chHHHHHHHHHHHHHHCCCeEEEeeccccccccHH----HHHHHHH--H----------HHhcCCCCCEEEEeCCCcchh
Confidence 45556666777777889987655442211 1111 1111111 0 1223568999999987642 1
Q ss_pred -HHHHHhhhCCCccccceeeeeeecccccchh------hHhhcccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEe
Q 011779 164 -WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 236 (477)
Q Consensus 164 -~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ 236 (477)
+....+.. ++....++++.+|+..+..+.. .....++.+|.+++.|....+.+.+ .|++..++.+++
T Consensus 89 ~~~~~~~~~-lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~~-----~G~~~~ki~~~~ 162 (339)
T 3rhz_A 89 EFDEKLMNK-LKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLRD-----FGMNVSKTVVQG 162 (339)
T ss_dssp HHHHHHHHH-HTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHHH-----TTCCCSEEEECC
T ss_pred hHHHHHHHH-HHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHHH-----cCCCcCceeecC
Confidence 11112221 1112468899999976543221 2345678999999999998888764 477666665444
Q ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEec
Q 011779 237 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (477)
Q Consensus 237 ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~ 316 (477)
+. |... +.+ ...+.++++|+|+|+++....++. + .++++|+|+|+
T Consensus 163 ~~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~-------l----------~~~~~f~ivG~ 207 (339)
T 3rhz_A 163 MW-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKE-------W----------KYDIPLKVYTW 207 (339)
T ss_dssp SC-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGG-------C----------CCSSCEEEEES
T ss_pred CC-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHh-------C----------CCCCeEEEEeC
Confidence 32 2110 000 112245689999999985322211 1 17899999999
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCC-----CCCcccHHHHHHHHcCCCEEeec
Q 011779 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-----WGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~-----~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
|+. + .++ ||+|+|++ +++..+|+.+|+.++.... ....+|.+++||||+|+|||
T Consensus 208 G~~-----~----------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI--- 268 (339)
T 3rhz_A 208 QNV-----E----------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVI--- 268 (339)
T ss_dssp CCC-----C----------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEE---
T ss_pred Ccc-----c----------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEE---
Confidence 942 1 244 99999986 8899999988988876220 01246899999999999999
Q ss_pred cccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
+++.++..+++.++.+|++++ + .++++++|..+ +++.+++|++++++.. +.++++.++++.
T Consensus 269 ----~~~~~~~~~~v~~~~~G~~~~--~--~~e~~~~i~~l--~~~~~~~m~~na~~~a-~~~~~~~f~k~~ 329 (339)
T 3rhz_A 269 ----VQEGIANQELIENNGLGWIVK--D--VEEAIMKVKNV--NEDEYIELVKNVRSFN-PILRKGFFTRRL 329 (339)
T ss_dssp ----EETTCTTTHHHHHHTCEEEES--S--HHHHHHHHHHC--CHHHHHHHHHHHHHHT-HHHHTTHHHHHH
T ss_pred ----EccChhHHHHHHhCCeEEEeC--C--HHHHHHHHHHh--CHHHHHHHHHHHHHHH-HHhhccHHHHHH
Confidence 999999999999999999987 4 88999999876 4677999999999876 447777766554
|
| >3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=180.62 Aligned_cols=169 Identities=11% Similarity=0.095 Sum_probs=124.4
Q ss_pred CCCeEEEEEeecccCCCH-HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~-~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+++.++++.|++...|+. ..+++++.+. + +.|+++++++|++. ..+.++ +++++|++.|+
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~ 277 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAES 277 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCS
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEecc
Confidence 345677778998765544 6667776665 5 56789999998872 222221 34679999998
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC--CCCCHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV--GKEGITPLA 424 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~--~d~~~~~la 424 (477)
. +...+++.||++|.. +.+.+++|||++|+|+|+. |. ..+..+..+.+.+...|.++++ .+.++++++
T Consensus 278 ~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~--p~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~ 347 (391)
T 3tsa_A 278 V-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVL--PQ-YFDQFDYARNLAAAGAGICLPDEQAQSDHEQFT 347 (391)
T ss_dssp C-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEEC--CC-STTHHHHHHHHHHTTSEEECCSHHHHTCHHHHH
T ss_pred C-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEec--CC-cccHHHHHHHHHHcCCEEecCcccccCCHHHHH
Confidence 6 456788999999943 4467999999999999921 10 1344456677778889999988 222399999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
+++.++++|++.+++|++.+++.. +..+++++++.++++..
T Consensus 348 ~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 348 DSIATVLGDTGFAAAAIKLSDEIT-AMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHTCTHHHHHHHHHHHHHH-TSCCHHHHHHHHHHC--
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 999999999999999998887765 66899998888876654
|
| >3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=170.69 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=122.7
Q ss_pred CCCeEEEEEeecccC-CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+++.+++++|++... ++.+.+.++++.+.+ .+++++++|++.. .+.++ +++++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~-----~~~l~------~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLD-----ISPLG------TLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSC-----CGGGC------SCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcC-----hhhhc------cCCCcEEEEcc
Confidence 455788888998665 466666666665543 4688999888732 11111 35689999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCce--EEeecCCceeeecCCCCCHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTT--EIVVNGTTGLLHPVGKEGITPLA 424 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~--e~v~~~~~G~l~~~~d~~~~~la 424 (477)
. ++..+|+.||++|.. +.+.+++|||++|+|+|+. |. ..+..+.. +.+.+...|+++++++.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~--p~-~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~ 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLA--PD-PRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR 360 (398)
T ss_dssp C-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEEC--CC-TTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH
T ss_pred C-CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEc--CC-CchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH
Confidence 8 899999999999943 4467999999999999932 11 25667788 88888889999987754466665
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 425 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 425 ~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++++|++.+++|++.+++.. +..+++.+++.+++++
T Consensus 361 ----~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 ----RLIGDESLRTAAREVREEMV-ALPTPAETVRRIVERI 396 (398)
T ss_dssp ----HHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred ----HHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 78899999999988888755 6689999998887765
|
| >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=170.76 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=119.3
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+.+.++++.|+....+ .+.+..+++.+. + .++++++ +|++.. .+.++ .++++|.+.|+
T Consensus 230 ~~~~v~v~~G~~~~~~-~~~~~~~~~~~~--------~-~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEH-PEFFRACAQAFA--------D-TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCC-HHHHHHHHHHHT--------T-SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcch-HHHHHHHHHHHh--------c-CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 4567788889887654 233333333331 1 2356655 565421 11111 24679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
.++. ++|+.||++|..+- ..+++|||++|+|+|+.+.+ ..+..+..+.+.+...|..++.++.++++++++
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~--~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~ 359 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHF--ATEAAPSAERVIELGLGSVLRPDQLEPASIREA 359 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGG--CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCC--cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHH
Confidence 8777 99999999996653 47889999999999943221 223345667777888999998874449999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+.++++|++.++++++.+++.. +..+++++++.+++++.+
T Consensus 360 ~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 360 VERLAADSAVRERVRRMQRDIL-SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHh-hCChHHHHHHHHHHHHhh
Confidence 9999999999999988877654 567888888888887754
|
| >3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=161.91 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=116.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEE-EecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+.+.++++.|+.....+ +.+..+++.+. +.+ +++++ +|.+.. .+.++ .++++|.+.++
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~~~~~~~~al~--------~~~-~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-GFFRDCARAFD--------GQP-WHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-HHHHHHHHHHT--------TSS-CEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-HHHHHHHHHHh--------cCC-cEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 45677788888764432 23322222221 224 77776 565421 11121 34679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
..+. .+|+.||++|..+- ..+++|||++|+|+|+.+ . ..+.....+.+.+...|..++.++.++++++++
T Consensus 305 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p--~-~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~ 374 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHGG------MGTLMEALYWGRPLVVVP--Q-SFDVQPMARRVDQLGLGAVLPGEKADGDTLLAA 374 (415)
T ss_dssp CCHH-HHHHHEEEEEESCC------HHHHHHHHHTTCCEEECC--C-SGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCc------HHHHHHHHHhCCCEEEeC--C-cchHHHHHHHHHHcCCEEEcccCCCCHHHHHHH
Confidence 8666 89999999996553 468999999999999321 1 134444566777777898888764449999999
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+.++++|++.++++.+.+++.. +..+.+++++.+++++.+
T Consensus 375 i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 375 VGAVAADPALLARVEAMRGHVR-RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhc
Confidence 9999999999999988777655 557888888888777653
|
| >2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-16 Score=151.58 Aligned_cols=159 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred CCCeEEEEEeecccC-------CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCc
Q 011779 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-------Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (477)
+...+++++|++... +.++.+++++.+ .++++++++++ +..+.++. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~-----~~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPD-----TVAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCH-----HHHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCC-----CCHHhhCC------CCCc
Confidence 346788889998875 556667776653 35788887654 33333332 3468
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCC
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~ 416 (477)
|.+ |+. +..++|+.||++|..+- +.+++|||++|+|+| +.+.++ ..+.+.+...|+.+++.
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~G------~~t~~Ea~~~G~P~v-------~~p~~~dq~~~a~~~~~~g~g~~~~~~ 330 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHAG------GVSTLTGLSAGVPQL-------LIPKGSVLEAPARRVADYGAAIALLPG 330 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECSC------TTHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHHTSEEECCTT
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCCc------HHHHHHHHHhCCCEE-------EccCcccchHHHHHHHHCCCeEecCcC
Confidence 999 987 57889999999996543 578999999999999 665533 56666676789998876
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+.+.++++++|.++++|++.++++++.+++.. ..-..+++++.++++.
T Consensus 331 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 331 EDSTEAIADSCQELQAKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 44489999999999999999999988877655 4446666666555443
|
| >3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-14 Score=142.54 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=131.2
Q ss_pred HHhhCCCCC--CeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE--EEecCCCcchHHHHHHHHHHHhcC
Q 011779 261 RESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKK 336 (477)
Q Consensus 261 r~~~~~~~~--~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~--ivG~g~~~~~~~~~~l~~~~~~~~ 336 (477)
|..++++.+ .+++++.++. .|..+.+++++.++.+ +.|+..++ ++|.+. .....+.+.+.+.|
T Consensus 430 r~~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~-------~vP~s~L~l~~~g~~~----g~~~~~~~~~~~~G 496 (631)
T 3q3e_A 430 KVDYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRD-------RAKVKVHFHFALGQSN----GITHPYVERFIKSY 496 (631)
T ss_dssp SCCCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHH-------HCSSEEEEEEEESSCC----GGGHHHHHHHHHHH
T ss_pred cccccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHH-------hCCCcEEEEEecCCCc----hhhHHHHHHHHHcC
Confidence 345677765 6788888874 6999999999999987 66887664 356432 12233334456678
Q ss_pred CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee------cCC
Q 011779 337 IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV------NGT 408 (477)
Q Consensus 337 l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~------~~~ 408 (477)
+.+++.|.|.. .+....|+.+|+++.|+. + +.|++.+|||++|+||| +...++...-+. -|-
T Consensus 497 I~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtTtlEALwmGVPVV-------Tl~G~~~asRvgaSlL~~~GL 566 (631)
T 3q3e_A 497 LGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNGIIDMVTLGLVGV-------CKTGAEVHEHIDEGLFKRLGL 566 (631)
T ss_dssp HGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHHHHHHHHTTCCEE-------EECCSSHHHHHHHHHHHHTTC
T ss_pred CCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChHHHHHHHcCCCEE-------eccCCcHHHHhHHHHHHhcCC
Confidence 88899999986 566788999999999985 4 55999999999999999 654444333221 133
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhh
Q 011779 409 TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 409 ~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~~ 471 (477)
.++++.. | .+++++...++..|++.+++++++.++.... .|+ ...+++++.|++++++
T Consensus 567 pE~LIA~-d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 567 PEWLIAN-T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMGQVFLEKLNA 626 (631)
T ss_dssp CGGGEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHHHHHHHHHHH
T ss_pred CcceecC-C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHHHHHHHHHHH
Confidence 3432322 3 8999999999999999999999999887644 444 5556666666666543
|
| >4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=149.97 Aligned_cols=333 Identities=10% Similarity=0.051 Sum_probs=192.8
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhh-hhhcCcE-E-Eec----------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDRGVQ-V-ISA---------- 139 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~-~~~~g~~-v-~~~---------- 139 (477)
.|.|+++++..-+-- .-+..+.++|.+. +++.++..... .+. .+.+. ....++. . +.+
T Consensus 8 ~~~~~~~v~GtRpe~---~k~~p~~~~l~~~-~~~~~~~tgqh--~~~---~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 78 (385)
T 4hwg_A 8 HMLKVMTIVGTRPEL---IKLCCVISEFDKH-TKHILVHTGQN--YAY---ELNQVFFDDMGIRKPDYFLEVAADNTAKS 78 (385)
T ss_dssp CCCEEEEEECSHHHH---HHHHHHHHHHHHH-SEEEEEECSCH--HHH---HHTHHHHC-CCCCCCSEECCCCCCCSHHH
T ss_pred hhhheeEEEEcCHhH---HHHHHHHHHHHhc-CCEEEEEeCCC--CCh---hHHHHHHhhCCCCCCceecCCCCCCHHHH
Confidence 356788887322100 3467788888876 88776653321 110 11111 1222321 0 111
Q ss_pred -----cchhhHHHhcCCcEEEEcCcchhhH-HHHHhhhCCCccccceeeeeeecccc--cchhhH-hhcc-cccccceee
Q 011779 140 -----KGQETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGH--YFKLDY-VKHL-PLVAGAMID 209 (477)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~--~~~~~~-~~~~-~~~~~~~~~ 209 (477)
.....+.+..+||+|+++......+ ...+...++ |++....+.... .+.... +... +..+.+++.
T Consensus 79 ~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~I-----Pv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~ 153 (385)
T 4hwg_A 79 IGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKI-----PIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITL 153 (385)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTC-----CEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCC-----CEEEEeCCCccccccCcHHHHHHHHHhhhceeecC
Confidence 1124566778999999987432222 233344444 333222222111 111111 1222 233445666
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCC-chhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc---cCCCH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQ 285 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngv-d~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~---~~Kg~ 285 (477)
+....+.+. ..|++++++.++.|++ |.-.+... ...+.++++++|++++++++++.||.. ..|++
T Consensus 154 te~~~~~l~-----~~G~~~~~I~vtGnp~~D~~~~~~~------~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l 222 (385)
T 4hwg_A 154 TEHARRYLI-----AEGLPAELTFKSGSHMPEVLDRFMP------KILKSDILDKLSLTPKQYFLISSHREENVDVKNNL 222 (385)
T ss_dssp SHHHHHHHH-----HTTCCGGGEEECCCSHHHHHHHHHH------HHHHCCHHHHTTCCTTSEEEEEECCC-----CHHH
T ss_pred CHHHHHHHH-----HcCCCcCcEEEECCchHHHHHHhhh------hcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHH
Confidence 666666554 4588888999998864 32221111 112467888999987777777777743 34788
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhc-C-C--CCcEEEcccc--CCHHHHHHhcCE
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K-I--QDRVHFVNKT--LTVAPYLAAIDV 359 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~-l--~~~v~~~g~~--~~l~~~~~~aDv 359 (477)
+.+++|+.++.+ ++ ++.+++.... . +++.+++. + + .++|.+.+.. .++..+|+.||+
T Consensus 223 ~~ll~al~~l~~-------~~-~~~vv~p~~p-----~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl 285 (385)
T 4hwg_A 223 KELLNSLQMLIK-------EY-NFLIIFSTHP-----R----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC 285 (385)
T ss_dssp HHHHHHHHHHHH-------HH-CCEEEEEECH-----H----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHh-------cC-CeEEEEECCh-----H----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE
Confidence 999999998865 23 6777665431 2 34444443 3 2 3689998764 468899999999
Q ss_pred EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-CceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHH
Q 011779 360 LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 438 (477)
Q Consensus 360 ~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-g~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~ 438 (477)
++.+| |.+..||+++|+||| +.+.. +..|.+..| ++.++.. | .+++++++.++++|++.++
T Consensus 286 vvt~S-------Ggv~~EA~alG~Pvv-------~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~ 347 (385)
T 4hwg_A 286 ILSDS-------GTITEEASILNLPAL-------NIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNK 347 (385)
T ss_dssp EEECC-------TTHHHHHHHTTCCEE-------ECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTB
T ss_pred EEECC-------ccHHHHHHHcCCCEE-------EcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHH
Confidence 99665 346799999999999 55443 345666555 6677654 5 8999999999999988777
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 439 TMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 439 ~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.|++++..+..+..+.+++++.+.+++
T Consensus 348 ~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 348 RTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp CCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 776655442012234444554444443
|
| >2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=147.60 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=117.5
Q ss_pred CCCeEEEEEeecccC-----CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEE
Q 011779 268 NEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (477)
Q Consensus 268 ~~~~~il~vGrl~~~-----Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~ 342 (477)
+...++++.|++... |.++.+++++.+ .++++++++++. ..+.++ +++++|.
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~-----~~~~l~------~~~~~v~ 322 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQ-----QLEGVA------NIPDNVR 322 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTT-----TTSSCS------SCCSSEE
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCc-----chhhhc------cCCCCEE
Confidence 345688889998754 788888888764 257888877652 111111 3567999
Q ss_pred EccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCC
Q 011779 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 343 ~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~ 418 (477)
+.++..+ ..+|..||++|.. +.+.+++|||++|+|+| +.+.. ...+.+.+...|+.++..+.
T Consensus 323 ~~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~ 388 (441)
T 2yjn_A 323 TVGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQV-------ILPDGWDTGVRAQRTQEFGAGIALPVPEL 388 (441)
T ss_dssp ECCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHHTSEEECCTTTC
T ss_pred EecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEE-------EeCCcccHHHHHHHHHHcCCEEEcccccC
Confidence 9999865 7889999999953 33679999999999999 66553 35566667778999887644
Q ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 466 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~ 466 (477)
++++++++|.++++|++.++++++.+++.. +..+.+++++.+++++.
T Consensus 389 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 389 TPDQLRESVKRVLDDPAHRAGAARMRDDML-AEPSPAEVVGICEELAA 435 (441)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 599999999999999999999988887655 56788888887777654
|
| >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-13 Score=131.60 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEE-EEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..++++.|+.. .+..+.+.+++..+.+ .++++ +++|.+.. .+.+ . .++++|.+.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~---------~~~~~~~~~g~~~~-----~~~~----~--~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLSAVDG---------LDWHVVLSVGRFVD-----PADL----G--EVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHHHHTT---------CSSEEEEECCTTSC-----GGGG----C--SCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHHHHhc---------CCcEEEEEECCcCC-----hHHh----c--cCCCCeEEecC
Confidence 3457777889876 4444444444444421 56677 45676531 1111 1 24679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+. .+|+.+|++|..+ ...+++|||++|+|+| +.... ...+.+.+...|+.++..+.+.++
T Consensus 313 ~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 378 (424)
T 2iya_A 313 VPQL-DILTKASAFITHA------GMGSTMEALSNAVPMV-------AVPQIAEQTMNAERIVELGLGRHIPRDQVTAEK 378 (424)
T ss_dssp CCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEE-------ECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHH
T ss_pred CCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEE-------EecCccchHHHHHHHHHCCCEEEcCcCCCCHHH
Confidence 8766 8999999998543 3579999999999999 55443 334556666788888765334899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
++++|.++++|++.++++++.+++.. +....++.++.+++++
T Consensus 379 l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 379 LREAVLAVASDPGVAERLAAVRQEIR-EAGGARAAADILEGIL 420 (424)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 99999999999998888877766543 4455666666666554
|
| >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=128.11 Aligned_cols=157 Identities=9% Similarity=-0.003 Sum_probs=105.8
Q ss_pred CCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
.++.++++.|++. ..+.++.+++++.++ ++++++.++.... ...+.+++|.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~------------~~~vv~~~g~~~~------------~~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ------------GRRVVLSSGWAGL------------GRIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT------------TCCEEEECTTTTC------------CCSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC------------CCEEEEEeCCccc------------ccccCCCCEEEecC
Confidence 4566777889887 556666676666543 4677776543211 01234679999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
.. ...++..+|++|..+ -..++.||+++|+|+| +...++ ..+.+.+...|..++..+.+.++
T Consensus 276 ~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v-------~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~ 341 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQV-------VVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341 (404)
T ss_dssp CC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEE-------EcCCcccHHHHHHHHHHCCCEeccCcCCCCHHH
Confidence 74 488999999999544 3478999999999999 554433 23445555688888766555999
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
+++++.++++ ++.++++.+.+.+.. + -..+++++.+++++
T Consensus 342 l~~ai~~ll~-~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 342 LSAALATALT-PGIRARAAAVAGTIR-T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTTCC-C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHH
Confidence 9999999998 877777666554322 2 34455555554444
|
| >4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-13 Score=128.40 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCCeEEEEEeecccCCC-HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg-~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|++...++ .+.+.+++..+.+ .+.++++.+.+.... ....+++++.+.++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~ 295 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVAD---------VDAEFVLTLGGGDLA-----------LLGELPANVRVVEW 295 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGG---------SSSEEEEECCTTCCC-----------CCCCCCTTEEEECC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhc---------cCceEEEEecCcccc-----------ccccCCCCEEEEee
Confidence 34566777788766443 3444444444422 556777666542111 12246789999998
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 426 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~ 426 (477)
. ....+|..+|+||. .+...+++|||++|+|+|+.+. ..+...+.+.+.+...|..++..+ ..+++
T Consensus 296 ~-p~~~lL~~~~~~v~------h~G~~s~~Eal~~GvP~v~~P~---~~dQ~~na~~v~~~G~g~~l~~~~----~~~~a 361 (400)
T 4amg_A 296 I-PLGALLETCDAIIH------HGGSGTLLTALAAGVPQCVIPH---GSYQDTNRDVLTGLGIGFDAEAGS----LGAEQ 361 (400)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCC------CHHHHHHHHHHTSEEECCTTT----CSHHH
T ss_pred c-CHHHHhhhhhheec------cCCccHHHHHHHhCCCEEEecC---cccHHHHHHHHHHCCCEEEcCCCC----chHHH
Confidence 6 46788999999983 3446789999999999993211 123333445555555777776544 46788
Q ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 427 IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 427 i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
|.++++|++.+++..+-+++ +...-+....++.++++
T Consensus 362 l~~lL~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 362 CRRLLDDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 99999999988776665544 43445666777666553
|
| >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-12 Score=122.54 Aligned_cols=157 Identities=8% Similarity=0.010 Sum_probs=106.9
Q ss_pred CCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 269 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 269 ~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
+..++++.|++. ..+..+.++++++++ +.+++++ |.+.. . ...++++|.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~-----~--------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADL-----V--------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTC-----C--------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCcc-----c--------ccCCCCCEEEeCc
Confidence 356788889984 677777777877653 2455554 76521 1 0234578999999
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCceeeecCCCCCHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGLLHPVGKEGITP 422 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~l~~~~d~~~~~ 422 (477)
..+ .++|..||++|..+ ...+++|||++|+|+| +....+ ..+.+.+...|+.++..+.+.++
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~ 358 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQI-------LLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEE-------ECCCCCccHHHHHHHHHCCCcccCCcCCCCHHH
Confidence 765 56889999999643 2479999999999999 554433 45556666788888765445899
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 423 LAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 423 la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
++++|.++ .|++.++++.+.+++ +....-.++..+.+++++.
T Consensus 359 l~~~i~~l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 359 LSAALATA-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp HHHHHHHH-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHh
Confidence 99999999 998877776665544 3334455555555555554
|
| >1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=125.76 Aligned_cols=248 Identities=13% Similarity=0.034 Sum_probs=163.3
Q ss_pred eeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhhh--------------------------------
Q 011779 208 IDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAEDN-------------------------------- 250 (477)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~~-------------------------------- 250 (477)
.+|...++.++. .+...+..-+.++.-|-|||+...+ .|...+
T Consensus 419 gVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~ 498 (796)
T 1l5w_A 419 GVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQ 498 (796)
T ss_dssp ESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHH
T ss_pred cccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHH
Confidence 444444555542 1112233455689999999998877 232100
Q ss_pred --HHHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCcc
Q 011779 251 --VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ 321 (477)
Q Consensus 251 --~~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~ 321 (477)
..+...+.. +++++|+. ++.+.++++.|+..+||+++ ++.++.++.+...+......+++++|.|.+.+..
T Consensus 499 l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y 578 (796)
T 1l5w_A 499 YREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGY 578 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhH
Confidence 112222334 46777764 57799999999999999999 8999888765333321112459999999987654
Q ss_pred hHHHHH---HHHHHH----hcCCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecc
Q 011779 322 TKFESE---LRNYVM----QKKIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKC 390 (477)
Q Consensus 322 ~~~~~~---l~~~~~----~~~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~ 390 (477)
.....- +...++ .-..++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 579 ~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i---- 654 (796)
T 1l5w_A 579 YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV---- 654 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE----
T ss_pred HHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeee----
Confidence 332211 333333 113556 788876 43 445566899999999998668999999999999999999
Q ss_pred ccccccCCCceEEeec--CCceeeecCCCCCHHHHHHH-------HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011779 391 LYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN-------IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461 (477)
Q Consensus 391 ~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~-------i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 461 (477)
++--|...|+.+. .+||++|.. + ++++.+. ..-.-.+++ .+++-+++. ...|||+.. ..|
T Consensus 655 ---GtLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y 723 (796)
T 1l5w_A 655 ---GTLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKELE---SGKYSDGDK-HAF 723 (796)
T ss_dssp ---ECSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHHH---HTTTTTTCT-TTT
T ss_pred ---cCcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHHH---cCCCCCCcH-HHH
Confidence 9988888887654 369999987 4 6766532 222223553 444444433 367999875 778
Q ss_pred HHHHHHHHh
Q 011779 462 AVVLKEVLK 470 (477)
Q Consensus 462 ~~~~~~~~~ 470 (477)
.++|++++.
T Consensus 724 ~~Ly~~L~~ 732 (796)
T 1l5w_A 724 DQMLHSIGK 732 (796)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHHhc
Confidence 899988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-10 Score=115.74 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=144.0
Q ss_pred HHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC-C
Q 011779 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-D 339 (477)
Q Consensus 261 r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~ 339 (477)
|+.+|++++.+++++..++. |=-+.+++++.++++ +.|+.+|++...+. ...+.+++.+++.|+. +
T Consensus 514 R~~~gLp~~~v~f~~fN~~~--Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~~ 580 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNFNQLY--KIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQN 580 (723)
T ss_dssp GGGGTCCTTSEEEECCSCGG--GCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCGG
T ss_pred hhhcCCCCCCEEEEeCCccc--cCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCcC
Confidence 67789999999998887764 677889999999988 78999999987653 3467788888888874 7
Q ss_pred cEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeecCC
Q 011779 340 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~~~ 416 (477)
+|+|.+.. ++....|+.+|+++=|.- -+-+.+..||+.+|+|||+-....-+++.|. .++.. |-..++..
T Consensus 581 r~~f~~~~~~~~~l~~~~~~Di~LDt~p---~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~--s~l~~~gl~e~ia~-- 653 (723)
T 4gyw_A 581 RIIFSPVAPKEEHVRRGQLADVCLDTPL---CNGHTTGMDVLWAGTPMVTMPGETLASRVAA--SQLTCLGCLELIAK-- 653 (723)
T ss_dssp GEEEEECCCHHHHHHHGGGCSEEECCSS---SCCSHHHHHHHHTTCCEEBCCCSSGGGTHHH--HHHHHHTCGGGBCS--
T ss_pred eEEECCCCCHHHHHHHhCCCeEEeCCCC---cCCHHHHHHHHHcCCCEEEccCCCccHhHHH--HHHHHcCCcccccC--
Confidence 89999975 556667889999997753 4568999999999999993322211222221 11111 22223322
Q ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhhh
Q 011779 417 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKKS 472 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~~~ 472 (477)
| .+++.+...++..|++.+.++++.-++.... .|+.+.+++.+++.|++++++.
T Consensus 654 ~--~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r~ 709 (723)
T 4gyw_A 654 N--RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHY 709 (723)
T ss_dssp S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 4 8999999999999999999999888877655 6999999999999999998754
|
| >1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=118.24 Aligned_cols=138 Identities=10% Similarity=0.037 Sum_probs=96.4
Q ss_pred CCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCCcchHHHHHHHHHHHhcCCCCcEEEc
Q 011779 269 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 269 ~~~~il~vGrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+..++++.|++. ..+.++.++++++++ +.+++++ |.+.. . . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~-----~--~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ------------GRRVILSRGWTEL-----V--L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT------------TCCEEEECTTTTC-----C--C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC------------CCeEEEEeCCccc-----c--c------cCCCCCEEEe
Confidence 356777788874 345556666666542 3566665 65521 0 0 2356789999
Q ss_pred cccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCCCH
Q 011779 345 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKEGI 420 (477)
Q Consensus 345 g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~~~ 420 (477)
++.. ..++|..||++|..+ -..+++||+++|+|+| +.... ...+.+.+...|..++..+.+.
T Consensus 292 ~~~~-~~~ll~~~d~~v~~~------G~~t~~Ea~~~G~P~i-------~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~ 357 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHHG------SAGTEHVATRAGVPQL-------VIPRNTDQPYFAGRVAALGIGVAHDGPTPTF 357 (416)
T ss_dssp SSCC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEE-------ECCCSBTHHHHHHHHHHHTSEEECSSSCCCH
T ss_pred ccCC-hHHHhccCCEEEecC------ChhHHHHHHHcCCCEE-------EccCCCCcHHHHHHHHHCCCccCCCCCCCCH
Confidence 9975 678999999999533 3579999999999999 54432 2444566667888887654458
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHH
Q 011779 421 TPLAKNIVKLATHVERRLTMGKRGYE 446 (477)
Q Consensus 421 ~~la~~i~~ll~~~~~~~~~~~~a~~ 446 (477)
++++++|.++ .|++.++++++.+++
T Consensus 358 ~~l~~~i~~l-~~~~~~~~~~~~~~~ 382 (416)
T 1rrv_A 358 ESLSAALTTV-LAPETRARAEAVAGM 382 (416)
T ss_dssp HHHHHHHHHH-TSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHH
Confidence 9999999999 999887777665543
|
| >2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=107.11 Aligned_cols=133 Identities=6% Similarity=0.039 Sum_probs=98.1
Q ss_pred CCCeEEEEEeecc---cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEc
Q 011779 268 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 268 ~~~~~il~vGrl~---~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+...+++++|++. +.|.+..+++++.++ +.++++++++... ..++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~------------~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQI------------PQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTS------------SSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhC------------CCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 4567888899986 456667777776532 3678777765311 1345799999
Q ss_pred cccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC----CceEEeecCCceeeecCCCC
Q 011779 345 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG----GTTEIVVNGTTGLLHPVGKE 418 (477)
Q Consensus 345 g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g----g~~e~v~~~~~G~l~~~~d~ 418 (477)
|+..+ ..++ +.||++|..+ .+.+++|||++|+|+| +.+.. +..+.+.+...|+.+++.+.
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i-------~~p~~~~Q~~na~~l~~~g~g~~~~~~~~ 139 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMV-------GIPLFADQPDNIAHMKARGAAVRVDFNTM 139 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEE-------ECCCSTTHHHHHHHHHTTTSEEECCTTTC
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEE-------eccchhhHHHHHHHHHHcCCeEEeccccC
Confidence 99755 5667 8999999543 3689999999999999 66553 34566777789999987744
Q ss_pred CHHHHHHHHHHHHhCHHHHHHH
Q 011779 419 GITPLAKNIVKLATHVERRLTM 440 (477)
Q Consensus 419 ~~~~la~~i~~ll~~~~~~~~~ 440 (477)
+.++++++|.++++|++.++++
T Consensus 140 ~~~~l~~~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 140 SSTDLLNALKRVINDPSYKENV 161 (170)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCHHHHHHH
Confidence 4899999999999998755444
|
| >2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.3e-11 Score=119.20 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=163.7
Q ss_pred eeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhh---------------------------h-----
Q 011779 208 IDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAED---------------------------N----- 250 (477)
Q Consensus 208 ~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~---------------------------~----- 250 (477)
.+|...++.++. .+...+..-+.++.-|-|||+...+ .|... .
T Consensus 408 gVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~ 487 (796)
T 2c4m_A 408 GVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLE 487 (796)
T ss_dssp ESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHH
T ss_pred eccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHH
Confidence 445555555553 2222334455789999999988766 22210 0
Q ss_pred ---HHHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHH-HHHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 251 ---VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 251 ---~~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~-ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
..+...+.. +++++|++ ++.+.++++.|+..+||+++ ++.++.++.+..........+++++|.|.+.+.
T Consensus 488 ~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~ 567 (796)
T 2c4m_A 488 ELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPG 567 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHh
Confidence 112222334 46677764 57799999999999999999 899988876433221101135999999998765
Q ss_pred chHHHHH---HHHHHH----hcCCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeec
Q 011779 321 QTKFESE---LRNYVM----QKKIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 321 ~~~~~~~---l~~~~~----~~~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
......- +...++ .-..++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 568 y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i--- 644 (796)
T 2c4m_A 568 YVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTL--- 644 (796)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEE---
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEE---
Confidence 4332211 333333 114566 788775 44 445566899999999998668999999999999999999
Q ss_pred cccccccCCCceEEeec--CCceeeecCCCCCHHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 464 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~~--~~~G~l~~~~d~~~~~la~~---i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~ 464 (477)
++--|...|+.+. .+||++|....++++++... ..-.-.+++ .+++-+++. ...|||+.. ..|.++
T Consensus 645 ----GtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~~---~g~fs~~~~-~~y~~L 715 (796)
T 2c4m_A 645 ----GTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDALD---NGTLNDNNS-GLFYDL 715 (796)
T ss_dssp ----EESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTTT---SSSSCCTTC-CHHHHH
T ss_pred ----eccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHHH---cCCCCCCCH-HHHHHH
Confidence 9988888887654 36999998743336666543 222222442 333333332 356999876 779999
Q ss_pred HHHHHh
Q 011779 465 LKEVLK 470 (477)
Q Consensus 465 ~~~~~~ 470 (477)
|++++.
T Consensus 716 y~~L~~ 721 (796)
T 2c4m_A 716 KHSLIH 721 (796)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 999874
|
| >2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=115.36 Aligned_cols=248 Identities=14% Similarity=0.059 Sum_probs=160.2
Q ss_pred eeeehhhHHHHHH-HhHhhhccCCCCeEEEecCCchhhh----hhhhh---------------------------h-H--
Q 011779 207 MIDSHVTAEYWKN-RTRERLRIKMPDTYVVHLGNSKELM----EVAED---------------------------N-V-- 251 (477)
Q Consensus 207 ~~~s~~~~~~~~~-~~~~~~~~~~~~i~vi~ngvd~~~~----~~~~~---------------------------~-~-- 251 (477)
-.+|...++.++. .+...+...+.++.-|-|||+...+ .|... . .
T Consensus 442 NgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~ 521 (824)
T 2gj4_A 442 NGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIR 521 (824)
T ss_dssp EESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHH
T ss_pred eeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHH
Confidence 3455555555542 2222334456789999999987766 23211 0 0
Q ss_pred ----HHHHHHHH----HHHhhCCC--CCCeEEEEEeecccCCCHHHH-HHHHHHHHHHHHhhccCcCceEEEEEecCCCc
Q 011779 252 ----AKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (477)
Q Consensus 252 ----~~~~~~~~----~r~~~~~~--~~~~~il~vGrl~~~Kg~~~l-l~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (477)
.+...+.. +++..|+. ++.+.++++.|+..+||++++ +..+.++.+..........+.+|+|.|.+.+.
T Consensus 522 ~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~ 601 (824)
T 2gj4_A 522 DVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPG 601 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHh
Confidence 11122223 55667764 677999999999999999998 88888775433321001116899999998765
Q ss_pred chHHHHH---HHHHHHhc----CCCC--cEEEcc-cc-CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeec
Q 011779 321 QTKFESE---LRNYVMQK----KIQD--RVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQK 389 (477)
Q Consensus 321 ~~~~~~~---l~~~~~~~----~l~~--~v~~~g-~~-~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~ 389 (477)
......- +...++.. .+++ +|.|+. +. +--..++++||++++||+.-.|..|+.-+=||..|.+.|
T Consensus 602 y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLti--- 678 (824)
T 2gj4_A 602 YHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTI--- 678 (824)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEE---
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEE---
Confidence 4332111 34444332 2355 788775 44 445556899999999998768999999999999999999
Q ss_pred cccccccCCCceEEee--cCCceeeecCCCCCHHHHHHHHH-------HHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 011779 390 CLYQGTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLAT-HVERRLTMGKRGYERVKEIFQEHHMAE 459 (477)
Q Consensus 390 ~~~~~~~~gg~~e~v~--~~~~G~l~~~~d~~~~~la~~i~-------~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~ 459 (477)
++--|...|+.+ ..+||++|... ++++ .++. .+.+ +++ .+++-++. +...|+|..- .
T Consensus 679 ----gtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~-l~~v~d~i---~~g~fs~~~~-~ 745 (824)
T 2gj4_A 679 ----GTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPE-LRQIIEQL---SSGFFSPKQP-D 745 (824)
T ss_dssp ----ECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHH-HHHHHHHH---HHTTTCTTST-T
T ss_pred ----EEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHH-HHHHHHHH---HhCCCCCCCh-H
Confidence 888777777653 35689999864 5655 4332 2333 333 33333333 3467999877 7
Q ss_pred HHHHHHHHHHh
Q 011779 460 RIAVVLKEVLK 470 (477)
Q Consensus 460 ~~~~~~~~~~~ 470 (477)
.|..+|++++.
T Consensus 746 ~y~~ly~~l~~ 756 (824)
T 2gj4_A 746 LFKDIVNMLMH 756 (824)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 79999998875
|
| >3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-07 Score=82.62 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=128.2
Q ss_pred cEEEEEeccCCC-Cchh-hHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--h---hhHHH
Q 011779 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--Q---ETINT 147 (477)
Q Consensus 75 ~~Il~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~--~---~~~~~ 147 (477)
|||+|.+..... |.|. .+...||++|+ +|.+++...+.. +. ...|..+..+.. . ....+
T Consensus 1 mki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~-------~~---~~~g~~v~~l~~~d~~~~~~~l~ 66 (282)
T 3hbm_A 1 MKVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGS-------LI---DEIPYPVYELSSESIYELINLIK 66 (282)
T ss_dssp CCEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTC-------CG---GGCCSCEEECSSSCHHHHHHHHH
T ss_pred CEEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHh-------HH---HHCCCeEEEcCccCHHHHHHHHH
Confidence 678888876544 5444 66778888887 788888554321 11 123777766542 2 23445
Q ss_pred hcCCcEEEEcCcch-hhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhc
Q 011779 148 ALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (477)
Q Consensus 148 ~~~~DiV~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 226 (477)
..++|+|++-+... ..|...+..... .+++ .+-+.. . . ..+|.++..+...... .|.
T Consensus 67 ~~~~d~lIvD~Y~~~~~~~~~lk~~~~----~~i~-~iDD~~-~-------~--~~~Dllin~~~~~~~~-------~Y~ 124 (282)
T 3hbm_A 67 EEKFELLIIDHYGISVDDEKLIKLETG----VKIL-SFDDEI-K-------P--HHCDILLNVNAYAKAS-------DYE 124 (282)
T ss_dssp HHTCSEEEEECTTCCHHHHHHHHHHHC----CEEE-EECSSC-C-------C--CCCSEEEECSTTCCGG-------GGT
T ss_pred hCCCCEEEEECCCCCHHHHHHHHHhcC----cEEE-EEecCC-C-------c--ccCCEEEeCCcccchh-------hcc
Confidence 57999999876433 334443332111 1222 233321 0 0 1244444433322210 121
Q ss_pred --cCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhcc
Q 011779 227 --IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKL 304 (477)
Q Consensus 227 --~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~ 304 (477)
++.. ..+ .-|.+.....+.... .+++ .-...+.++++.|..+...-...+++++.+
T Consensus 125 ~~~p~~-~~~-l~G~~Y~~lR~eF~~---------~~~~-~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~---------- 182 (282)
T 3hbm_A 125 GLVPFK-CEV-RCGFSYALIREEFYQ---------EAKE-NRKKKYDFFICMGGTDIKNLSLQIASELPK---------- 182 (282)
T ss_dssp TTCC-C-CEE-EESGGGCCCCHHHHH---------HTTC-CCCCCEEEEEECCSCCTTCHHHHHHHHSCT----------
T ss_pred ccCCCC-CeE-eeCCcccccCHHHHH---------hhhh-ccccCCeEEEEECCCchhhHHHHHHHHhhc----------
Confidence 2222 222 225433322111100 0001 111233455667765544323334444331
Q ss_pred CcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCC
Q 011779 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (477)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~P 384 (477)
..+ -.+|.|.+. +..+++++.+++. .++.+.++.+++.++|+.||++|.+ .|.++.|++++|+|
T Consensus 183 -~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~m~~~m~~aDlvI~~-------gG~T~~E~~~~g~P 246 (282)
T 3hbm_A 183 -TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHENIAKLMNESNKLIIS-------ASSLVNEALLLKAN 246 (282)
T ss_dssp -TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSCHHHHHHTEEEEEEE-------SSHHHHHHHHTTCC
T ss_pred -CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CcHHHHHHHHcCCC
Confidence 123 446678774 3567777766653 4899999999999999999999963 25899999999999
Q ss_pred EE
Q 011779 385 VL 386 (477)
Q Consensus 385 vI 386 (477)
.|
T Consensus 247 ~i 248 (282)
T 3hbm_A 247 FK 248 (282)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.5e-05 Score=78.48 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=93.0
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEE-EEecCCCcchHHHHHHHHHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|..... ..+.+.+++..+.+ .+.+++ .+|..... ...+.+.+ + .++++.+.++
T Consensus 270 ~~~vv~vs~GS~~~~-~~~~~~~~~~~l~~---------~~~~~lw~~~~~~~~--~l~~~~~~---~--~~~~~~v~~w 332 (456)
T 2c1x_A 270 PTSVVYISFGTVTTP-PPAEVVALSEALEA---------SRVPFIWSLRDKARV--HLPEGFLE---K--TRGYGMVVPW 332 (456)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHH---------HTCCEEEECCGGGGG--GSCTTHHH---H--HTTTEEEESC
T ss_pred CcceEEEecCccccC-CHHHHHHHHHHHHh---------cCCeEEEEECCcchh--hCCHHHHh---h--cCCceEEecC
Confidence 455677777887643 34444444444432 234554 44543100 00011111 1 1358888898
Q ss_pred cCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCCCCHHHH
Q 011779 347 TLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGKEGITPL 423 (477)
Q Consensus 347 ~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d~~~~~l 423 (477)
..+. .+|+ ++|+||. -+-.++++||+++|+|+|+.+.. .+.......+.+. +.|..++.++.+.+++
T Consensus 333 ~pq~-~vL~h~~~~~fvt------h~G~~S~~Eal~~GvP~i~~P~~---~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l 402 (456)
T 2c1x_A 333 APQA-EVLAHEAVGAFVT------HCGWNSLWESVAGGVPLICRPFF---GDQRLNGRMVEDVLEIGVRIEGGVFTKSGL 402 (456)
T ss_dssp CCHH-HHHTSTTEEEEEE------CCCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTSCCEEECGGGSCCHHHH
T ss_pred CCHH-HHhcCCcCCEEEe------cCCcchHHHHHHhCceEEecCCh---hhHHHHHHHHHHHhCeEEEecCCCcCHHHH
Confidence 7654 6788 7788883 33467999999999999943221 1222334455565 6788777554458999
Q ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 424 AKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 424 a~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
+++|.+++.|++ .+++++++++..
T Consensus 403 ~~~i~~ll~~~~-~~~~r~~a~~l~ 426 (456)
T 2c1x_A 403 MSCFDQILSQEK-GKKLRENLRALR 426 (456)
T ss_dssp HHHHHHHHHSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCc-HHHHHHHHHHHH
Confidence 999999999986 566777766544
|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0019 Score=67.45 Aligned_cols=324 Identities=11% Similarity=0.125 Sum_probs=170.1
Q ss_pred ccEEEEEecc-CCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcC
Q 011779 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (477)
Q Consensus 74 ~~~Il~v~~~-~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 150 (477)
+..|+|.+.. -..++-++.+.+ +|.++ ++++.+++..... .....+++++.....+.+.....
T Consensus 352 ~~~ivf~s~~g~~~~~n~~~i~~---~l~~~~~~~~~~w~~~~~~~-----------~~~~~~~~~v~~~s~~~~~~l~~ 417 (729)
T 3l7i_A 352 PKTIVFESFGGKNYSDSPKYIYE---YMQKYYPNYRYIWSFKNPDK-----------NVVPGSAEKVKRNSAEYYQAYSE 417 (729)
T ss_dssp EEEEEEEBGGGTBSCHHHHHHHH---HHHHHCTTSEEEEEESSGGG-----------CCCCSSCEEEETTSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHHHH---HHHHhCCCceEEEEEcCccc-----------ccCCCCcEEEEECCHHHHHHHhc
Confidence 3456666643 223555565544 44433 4788888744211 00123666666666655555556
Q ss_pred CcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccccch-----------------hhHhhcccccccceeeehhh
Q 011779 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------LDYVKHLPLVAGAMIDSHVT 213 (477)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~~~ 213 (477)
.++++.++.....+ . +.....++.++|+...-... ..........+.+++.+...
T Consensus 418 a~~~v~n~~~~~~~------~--k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~s~~~ 489 (729)
T 3l7i_A 418 ASHWVSNARTPLYL------N--KKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWDYLISPNRYS 489 (729)
T ss_dssp EEEEEESSCCCTTS------C--CCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHHHHHTTCSEEEESSHHH
T ss_pred CcEEEECCCCcccc------c--cCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHHHhhccCCEEEeCCHHH
Confidence 77777766433211 1 11224567778875211110 01112224567777777776
Q ss_pred HHHHHHHhHhhhccCCCCeEEEecCCchh--hhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCC----C---
Q 011779 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK----G--- 284 (477)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~i~vi~ngvd~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~K----g--- 284 (477)
.+.+.+ .++++..+ ++..|..-. .+.... ....++.+++++++++++.+|+|+-...... |
T Consensus 490 ~~~~~~----~f~~~~~~--i~~~G~PR~D~l~~~~~----~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~ 559 (729)
T 3l7i_A 490 TEIFRS----AFWMDEER--ILEIGYPRNDVLVNRAN----DQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYL 559 (729)
T ss_dssp HHHHHH----HTCCCGGG--EEESCCGGGHHHHHSTT----CHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSC
T ss_pred HHHHHH----HhCCCcce--EEEcCCCchHHHhcccc----hHHHHHHHHHHhCCCCCCeEEEEeeeeeCCccccccccc
Confidence 666544 56666554 444555432 221111 1223577899999999999999987655421 1
Q ss_pred --HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEE
Q 011779 285 --QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362 (477)
Q Consensus 285 --~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~ 362 (477)
...-++.+.+... +++.+++-.- |... ......+..+.+.-.....++.++|..||++|.
T Consensus 560 ~~~~~~~~~l~~~l~---------~~~~li~r~H------p~~~---~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lIT 621 (729)
T 3l7i_A 560 FELKIDLDNLYKELG---------DDYVILLRMH------YLIS---NALDLSGYENFAIDVSNYNDVSELFLISDCLIT 621 (729)
T ss_dssp CCCTTCHHHHHHHHT---------TTEEEEECCC------HHHH---TTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEE
T ss_pred cchhhHHHHHHHHcC---------CCeEEEEecC------cchh---ccccccccCCcEEeCCCCcCHHHHHHHhCEEEe
Confidence 1112233333221 4677766544 3221 111112334566656555799999999999993
Q ss_pred cCCCCCCcccHHHHHHHHcCCCEEeeccccccccCC-------Cc-eEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 363 NSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAG-------GT-TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 363 pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~g-------g~-~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
= ++-++.|++..++|||.. +.|.. |. -++ .+..-|-++. + .++|.++|.....++
T Consensus 622 D-------ySSv~fD~~~l~kPiif~-----~~D~~~Y~~~~rg~y~d~-~~~~pg~~~~--~--~~eL~~~i~~~~~~~ 684 (729)
T 3l7i_A 622 D-------YSSVMFDYGILKRPQFFF-----AYDIDKYDKGLRGFYMNY-MEDLPGPIYT--E--PYGLAKELKNLDKVQ 684 (729)
T ss_dssp S-------SCTHHHHHGGGCCCEEEE-----CTTTTTTTSSCCSBSSCT-TSSSSSCEES--S--HHHHHHHHTTHHHHH
T ss_pred e-------chHHHHhHHhhCCCEEEe-----cCCHHHHhhccCCcccCh-hHhCCCCeEC--C--HHHHHHHHhhhhccc
Confidence 2 456899999999999932 22221 11 111 1112233333 3 889999998876533
Q ss_pred HHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Q 011779 435 ERRLTMGKRGYERVKEI--FQEHHMAERIAVVLKE 467 (477)
Q Consensus 435 ~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~ 467 (477)
....+. ..+...+. |.-.+.++++.+.+-+
T Consensus 685 ~~~~~~---~~~~~~~~~~~~dg~as~ri~~~i~~ 716 (729)
T 3l7i_A 685 QQYQEK---IDAFYDRFCSVDNGKASQYIGDLIHK 716 (729)
T ss_dssp HHTHHH---HHHHHHHHSTTCCSCHHHHHHHHHHH
T ss_pred hhHHHH---HHHHHHHhCCccCChHHHHHHHHHHh
Confidence 332222 22222222 2333455665554443
|
| >2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00017 Score=71.49 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=91.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEE-ecCCC-c-chHHHHHHHHHHHhcCCCCcEEEc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMN-A-QTKFESELRNYVMQKKIQDRVHFV 344 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~iv-G~g~~-~-~~~~~~~l~~~~~~~~l~~~v~~~ 344 (477)
+...+++..|.+.. ...+.+.+++..+.+ .+.+++++ |.... . .....+.+.+. . ++++.+.
T Consensus 294 ~~~vv~vs~GS~~~-~~~~~~~~~~~~l~~---------~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~--~~~~~v~ 358 (482)
T 2pq6_A 294 PGSVVYVNFGSTTV-MTPEQLLEFAWGLAN---------CKKSFLWIIRPDLVIGGSVIFSSEFTNE---I--ADRGLIA 358 (482)
T ss_dssp TTCEEEEECCSSSC-CCHHHHHHHHHHHHH---------TTCEEEEECCGGGSTTTGGGSCHHHHHH---H--TTTEEEE
T ss_pred CCceEEEecCCccc-CCHHHHHHHHHHHHh---------cCCcEEEEEcCCccccccccCcHhHHHh---c--CCCEEEE
Confidence 34567777787653 344555555544433 44666655 43210 0 00011222222 1 3688999
Q ss_pred cccCCHHHHHHhcCE--EEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEee-cCCceeeecCCCCCHH
Q 011779 345 NKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVV-NGTTGLLHPVGKEGIT 421 (477)
Q Consensus 345 g~~~~l~~~~~~aDv--~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~-~~~~G~l~~~~d~~~~ 421 (477)
++..+. .+|+.+++ ||. -+-.++++||+++|+|+|+.|.. .+.......+. .-+.|..++ .+.+.+
T Consensus 359 ~~~pq~-~~L~h~~~~~~vt------h~G~~s~~Eal~~GvP~i~~P~~---~dQ~~na~~~~~~~G~g~~l~-~~~~~~ 427 (482)
T 2pq6_A 359 SWCPQD-KVLNHPSIGGFLT------HCGWNSTTESICAGVPMLCWPFF---ADQPTDCRFICNEWEIGMEID-TNVKRE 427 (482)
T ss_dssp SCCCHH-HHHTSTTEEEEEE------CCCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTSCCEEECC-SSCCHH
T ss_pred eecCHH-HHhcCCCCCEEEe------cCCcchHHHHHHcCCCEEecCcc---cchHHHHHHHHHHhCEEEEEC-CCCCHH
Confidence 987665 58876665 662 33457999999999999943222 12222334343 455777776 334489
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 422 PLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 422 ~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++.++|.+++.|++ .+++++++++..
T Consensus 428 ~l~~~i~~ll~~~~-~~~~r~~a~~l~ 453 (482)
T 2pq6_A 428 ELAKLINEVIAGDK-GKKMKQKAMELK 453 (482)
T ss_dssp HHHHHHHHHHTSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHHH
Confidence 99999999999987 466777777654
|
| >3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00019 Score=70.13 Aligned_cols=155 Identities=11% Similarity=-0.023 Sum_probs=91.4
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHH-HHHHhcCCCCcEEEccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNK 346 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~-~~~~~~~l~~~v~~~g~ 346 (477)
++..+++..|++... ..+.+.+.+..+.+ .+.+++++-.+. ..+.+- ...++ .++|+.+.++
T Consensus 272 ~~~vVyvsfGS~~~~-~~~~~~el~~~l~~---------~~~~flw~~~~~-----~~~~lp~~~~~~--~~~~~~vv~w 334 (454)
T 3hbf_A 272 NSSVVYISFGSVVTP-PPHELTALAESLEE---------CGFPFIWSFRGD-----PKEKLPKGFLER--TKTKGKIVAW 334 (454)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHHHHH---------HCCCEEEECCSC-----HHHHSCTTHHHH--TTTTEEEESS
T ss_pred CCceEEEecCCCCcC-CHHHHHHHHHHHHh---------CCCeEEEEeCCc-----chhcCCHhHHhh--cCCceEEEee
Confidence 455677777887643 34555555444433 345565543331 111111 11111 2368888898
Q ss_pred cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecC-CceeeecCCCCCHHHHHH
Q 011779 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNG-TTGLLHPVGKEGITPLAK 425 (477)
Q Consensus 347 ~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~-~~G~l~~~~d~~~~~la~ 425 (477)
..+ ..+++.+++-++-+. +--.+++||+++|+|+|+.+. ..+.......+.+. +.|..++.++.+.+++.+
T Consensus 335 ~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~---~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~ 406 (454)
T 3hbf_A 335 APQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPF---FGDQGLNTILTESVLEIGVGVDNGVLTKESIKK 406 (454)
T ss_dssp CCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCC---STTHHHHHHHHHTTSCSEEECGGGSCCHHHHHH
T ss_pred CCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcc---cccHHHHHHHHHHhhCeeEEecCCCCCHHHHHH
Confidence 765 588999994333333 234789999999999993221 11222233445553 678877765555899999
Q ss_pred HHHHHHhCHHHHHHHHHHHHHHH
Q 011779 426 NIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 426 ~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
++.+++.+++ .++|++++++..
T Consensus 407 av~~ll~~~~-~~~~r~~a~~l~ 428 (454)
T 3hbf_A 407 ALELTMSSEK-GGIMRQKIVKLK 428 (454)
T ss_dssp HHHHHHSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHCCCh-HHHHHHHHHHHH
Confidence 9999998853 345666665533
|
| >3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0052 Score=57.87 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHhhCCCCC-CeEEEEEeecccCCCH--HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHh
Q 011779 258 EHVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (477)
Q Consensus 258 ~~~r~~~~~~~~-~~~il~vGrl~~~Kg~--~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (477)
+.+.++.|++.+ +++.+..|.-.+.|.. +.+.++++.+.+ .+.+++++|+. ...+..++..+.
T Consensus 173 ~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~-----~e~~~~~~i~~~ 238 (349)
T 3tov_A 173 QEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGP-----MDLEMVQPVVEQ 238 (349)
T ss_dssp HHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCT-----TTHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCc-----chHHHHHHHHHh
Confidence 344556677654 4555666754556654 467777776654 35678888865 344555555555
Q ss_pred cCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 335 KKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 335 ~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
.+ ...+.+.|.. .++..+++.||++|.+-. |..-+ |.++|+|+|+
T Consensus 239 ~~-~~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~ 285 (349)
T 3tov_A 239 ME-TKPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVA 285 (349)
T ss_dssp CS-SCCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEE
T ss_pred cc-cccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEE
Confidence 54 2346666753 679999999999996533 44445 9999999993
|
| >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.023 Score=52.88 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=80.2
Q ss_pred hCCCCCCeEEEEEeecccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcE
Q 011779 264 LGVRNEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (477)
Q Consensus 264 ~~~~~~~~~il~vGrl~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v 341 (477)
.+...++++++..|.-.+.|... .+.+.++.+.+ .++++++.++++ .+.+..++..+.. +++
T Consensus 173 ~~~~~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~~g~~----~e~~~~~~i~~~~---~~~ 236 (326)
T 2gt1_A 173 LPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLAD---------SGIRIKLPWGAP----HEEERAKRLAEGF---AYV 236 (326)
T ss_dssp CCTTTTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT---------TCCEEEECCSSH----HHHHHHHHHHTTC---TTE
T ss_pred ccccCCCEEEEEeCCCCccccCCHHHHHHHHHHHHH---------CCCcEEEecCCH----HHHHHHHHHHhhC---Ccc
Confidence 34445566777777655566654 55555555532 467888874341 2333344444433 246
Q ss_pred EEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccc---ccCCCceEEeecCCceeeecCC
Q 011779 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQG---TAAGGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 342 ~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~---~~~gg~~e~v~~~~~G~l~~~~ 416 (477)
.+.|.. .++..+++.||++|-+-. |..=+ |.|+|+|+|+.-.+... ...+....++. +....+-..
T Consensus 237 ~l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~-~~~~cm~~I- 307 (326)
T 2gt1_A 237 EVLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCR-APGNELSQL- 307 (326)
T ss_dssp EECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEE-CGGGCGGGC-
T ss_pred cccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEec-CCcccccCC-
Confidence 677753 788999999999996633 44445 77899999943221100 01122222332 222222222
Q ss_pred CCCHHHHHHHHHHHHhC
Q 011779 417 KEGITPLAKNIVKLATH 433 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~ 433 (477)
+ +++..+++.++++.
T Consensus 308 ~--~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 308 T--ANAVKQFIEENAEK 322 (326)
T ss_dssp C--HHHHHHHHHHTTTT
T ss_pred C--HHHHHHHHHHHHHH
Confidence 3 88888888888763
|
| >2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00099 Score=65.54 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=83.2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc
Q 011779 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (477)
Q Consensus 268 ~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~ 347 (477)
++..+++..|.+...-+.+.+.+++..+.+ .+.+++++-+.... ...+.+.+.... ++++.+.++.
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~---------~~~~~l~~~~~~~~--~l~~~~~~~~~~---~~~~~v~~w~ 340 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKH---------SGVRFLWSNSAEKK--VFPEGFLEWMEL---EGKGMICGWA 340 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHH---------HTCEEEEECCCCGG--GSCTTHHHHHHH---HCSEEEESSC
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHh---------CCCcEEEEECCCcc--cCChhHHHhhcc---CCCEEEEccC
Confidence 445677777887632344444444444433 34566654432100 011112222110 2578888887
Q ss_pred CCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEE-eecCCceeee-c---CC--CC
Q 011779 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEI-VVNGTTGLLH-P---VG--KE 418 (477)
Q Consensus 348 ~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~-v~~~~~G~l~-~---~~--d~ 418 (477)
.+. .+|+ ++|+||. -+-.++++||+++|+|+|+.+. ..+....... ++.-+.|..+ . .+ +.
T Consensus 341 pq~-~vL~h~~~~~fvt------h~G~~s~~Eal~~GvP~i~~P~---~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~ 410 (463)
T 2acv_A 341 PQV-EVLAHKAIGGFVS------HCGWNSILESMWFGVPILTWPI---YAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410 (463)
T ss_dssp CHH-HHHHSTTEEEEEE------CCCHHHHHHHHHTTCCEEECCC---STTHHHHHHHHHHTSCCEEESCSSCCTTCCCC
T ss_pred CHH-HHhCCCccCeEEe------cCCchhHHHHHHcCCCeeeccc---hhhhHHHHHHHHHHcCeEEEEecccCCCCccc
Confidence 665 5676 6888883 3346899999999999994222 1122223444 3555678777 2 23 23
Q ss_pred CHHHHHHHHHHHHh-CHHHHH
Q 011779 419 GITPLAKNIVKLAT-HVERRL 438 (477)
Q Consensus 419 ~~~~la~~i~~ll~-~~~~~~ 438 (477)
+.+++.++|.++++ +++.++
T Consensus 411 ~~~~l~~ai~~ll~~~~~~r~ 431 (463)
T 2acv_A 411 AAEEIEKGLKDLMDKDSIVHK 431 (463)
T ss_dssp CHHHHHHHHHHHTCTTCTHHH
T ss_pred cHHHHHHHHHHHHhccHHHHH
Confidence 48999999999996 344433
|
| >1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=62.18 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHhhCCC-CCCeEEEEEee-cccCCCHH--HHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 257 REHVRESLGVR-NEDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 257 ~~~~r~~~~~~-~~~~~il~vGr-l~~~Kg~~--~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
.+.+++.+|++ +++++++..|. ..+.|... .+.++++.|.+ .++++++.|.. ...+..++..
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~-----~e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSA-----KDHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCG-----GGHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeCh-----hhHHHHHHHH
Confidence 45667788876 44566667776 44666654 77777777654 36888998865 2334444444
Q ss_pred HhcC--C-CCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEee
Q 011779 333 MQKK--I-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQ 388 (477)
Q Consensus 333 ~~~~--l-~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~ 388 (477)
+..+ . .+.+.+.|.. .++..+++.||++|.+.. |..-+ |.|+|+|+|+.
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~Hl-Aaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLMHV-AAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHHHH-HHHcCCCEEEE
Confidence 3322 0 1234566753 788999999999997754 33333 99999999944
|
| >2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=63.53 Aligned_cols=79 Identities=6% Similarity=-0.085 Sum_probs=52.0
Q ss_pred cEEEccccCCHHHHHH-hcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC--CCceEEeecCCceeeecCC
Q 011779 340 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA--GGTTEIVVNGTTGLLHPVG 416 (477)
Q Consensus 340 ~v~~~g~~~~l~~~~~-~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~--gg~~e~v~~~~~G~l~~~~ 416 (477)
++...++.+++..+|+ .||++|. -+-..+++|++++|+|.|..+.+. ..+. ...++.+.+...++++
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIs------haGagTv~Eal~~G~P~IvVP~~~-~~~~HQ~~nA~~l~~~G~~~~~--- 184 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVIS------HAGTGSILDSLRLNKPLIVCVNDS-LMDNHQQQIADKFVELGYVWSC--- 184 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEE------SSCHHHHHHHHHTTCCCCEECCSS-CCCCHHHHHHHHHHHHSCCCEE---
T ss_pred eEEEeeccchHHHHHHhcCCEEEE------CCcHHHHHHHHHhCCCEEEEcCcc-cccchHHHHHHHHHHCCCEEEc---
Confidence 5677788899999999 9999994 334679999999999999544432 1100 0112233333345554
Q ss_pred CCCHHHHHHHHHHH
Q 011779 417 KEGITPLAKNIVKL 430 (477)
Q Consensus 417 d~~~~~la~~i~~l 430 (477)
+ ++.++++|.++
T Consensus 185 ~--~~~L~~~i~~l 196 (224)
T 2jzc_A 185 A--PTETGLIAGLR 196 (224)
T ss_dssp C--SCTTTHHHHHH
T ss_pred C--HHHHHHHHHHH
Confidence 2 56677777776
|
| >2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0053 Score=60.60 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=54.2
Q ss_pred EEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC---
Q 011779 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG--- 416 (477)
Q Consensus 341 v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~--- 416 (477)
+.+.++..+. .+++.+++-++=+. |--.+++||+++|+|+|+.+.. .+.......+ +.-+.|..++..
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~---~DQ~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLY---AEQKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCS---TTHHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEecccc---ccchHHHHHHHHHhCeEEEeecccCC
Confidence 4445576544 89999995332232 3347899999999999932221 1222234443 455677766543
Q ss_pred CCCHHHHHHHHHHHHhC
Q 011779 417 KEGITPLAKNIVKLATH 433 (477)
Q Consensus 417 d~~~~~la~~i~~ll~~ 433 (477)
..+.++++++|.+++.+
T Consensus 413 ~~~~~~l~~av~~vl~~ 429 (480)
T 2vch_A 413 LVRREEVARVVKGLMEG 429 (480)
T ss_dssp CCCHHHHHHHHHHHHTS
T ss_pred ccCHHHHHHHHHHHhcC
Confidence 33489999999999983
|
| >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
|---|
Probab=90.78 E-value=0.6 Score=43.06 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=47.4
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
+|++|||+|+ |+..+.....++|.+.||+|..+...++.... ...........|++++.....
T Consensus 19 ~~~~mrIvf~-------G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~~ 89 (329)
T 2bw0_A 19 YFQSMKIAVI-------GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQALP 89 (329)
T ss_dssp --CCCEEEEE-------CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEECH
T ss_pred cCCCCEEEEE-------cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCcccccccccH
Confidence 4666899998 33456666778888889998755543221110 112334456678888655422
Q ss_pred --hhHHHhcCCcEEEEcC
Q 011779 143 --ETINTALKADLIVLNT 158 (477)
Q Consensus 143 --~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++-.
T Consensus 90 ~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 90 DVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHHTTCCSEEEESS
T ss_pred HHHHHHHhcCCCEEEEee
Confidence 2334567999999864
|
| >3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=88.25 E-value=1.4 Score=40.31 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch----
Q 011779 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ---- 142 (477)
Q Consensus 71 ~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~---- 142 (477)
+|++|||+|+.. ..+.....++|.+.||+|..+..+++....+ ...++.......|++++.....
T Consensus 4 m~~~mrivf~Gt-------~~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~ 76 (318)
T 3q0i_A 4 MSQSLRIVFAGT-------PDFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDE 76 (318)
T ss_dssp ---CCEEEEECC-------SHHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHH
T ss_pred cccCCEEEEEec-------CHHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHH
Confidence 466789998853 3456666778888899987555443222111 1123445566788888654332
Q ss_pred -hhHHHhcCCcEEEEcC
Q 011779 143 -ETINTALKADLIVLNT 158 (477)
Q Consensus 143 -~~~~~~~~~DiV~~~~ 158 (477)
....+..+||++++-.
T Consensus 77 ~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 77 SKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEeC
Confidence 2445678999999864
|
| >3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} | Back alignment and structure |
|---|
Probab=86.33 E-value=5.2 Score=34.57 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=47.4
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch--------
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~-------- 142 (477)
.||||+|+.. |....+..+.++|.+. +++|..+..+.+.. .........|++++.+...
T Consensus 21 ~~~rI~~l~S-----G~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~------~~~~~A~~~gIp~~~~~~~~~~~r~~~ 89 (229)
T 3auf_A 21 HMIRIGVLIS-----GSGTNLQAILDGCREGRIPGRVAVVISDRADA------YGLERARRAGVDALHMDPAAYPSRTAF 89 (229)
T ss_dssp TCEEEEEEES-----SCCHHHHHHHHHHHTTSSSEEEEEEEESSTTC------HHHHHHHHTTCEEEECCGGGSSSHHHH
T ss_pred CCcEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEcCCCch------HHHHHHHHcCCCEEEECcccccchhhc
Confidence 3478988874 3235788888888876 67876555443322 1234556789998753221
Q ss_pred ----hhHHHhcCCcEEEEcC
Q 011779 143 ----ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ----~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 90 ~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEcC
Confidence 1334567999999865
|
| >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.95 E-value=4.5 Score=34.64 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=46.3
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCc--EEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------- 142 (477)
||||+++.. |....+..+.++|.+.++ +|..+..+.+.. .........|++++.+...
T Consensus 1 m~rI~vl~S-----G~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~------~~~~~A~~~gIp~~~~~~~~~~~r~~~~ 69 (216)
T 2ywr_A 1 MLKIGVLVS-----GRGSNLQAIIDAIESGKVNASIELVISDNPKA------YAIERCKKHNVECKVIQRKEFPSKKEFE 69 (216)
T ss_dssp CEEEEEEEC-----SCCHHHHHHHHHHHTTSSCEEEEEEEESCTTC------HHHHHHHHHTCCEEECCGGGSSSHHHHH
T ss_pred CCEEEEEEe-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCh------HHHHHHHHcCCCEEEeCcccccchhhhh
Confidence 368888863 333678888899988887 765444443322 1234456678888743221
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..++|+|++-.
T Consensus 70 ~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAG 88 (216)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeC
Confidence 1334567999999864
|
| >4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=85.63 E-value=1.2 Score=39.88 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=30.2
Q ss_pred cCCCccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEec
Q 011779 70 SFMKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITI 112 (477)
Q Consensus 70 ~~~~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~ 112 (477)
..|+.||||+|.....+.+.. ......++.|.+.||+|.++-.
T Consensus 18 ~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 18 LYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp ----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred chhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 358889999998665555544 4456778899999999999874
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=85.40 E-value=5.8 Score=30.35 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=71.3
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH---------hcCEEEEcCCCCCCcccHHHHHHH
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIEAM 379 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~---------~aDv~v~pS~~~~E~~g~~~lEAm 379 (477)
.+++|+.+.. .....+.+..++.|....|......++....+. ..|++++-... .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777763 467777888887765435665555555555554 37888865541 344566777766
Q ss_pred H-----cCCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 380 A-----FQLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 380 a-----~G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
. .++|+|+ .+.... ..+....|..+++..|-+ .+++.+.|..++.
T Consensus 78 ~~~~~~~~~pii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVV------LSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEE------EecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 5 4578873 233222 123344577889999888 9999999988764
|
| >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=85.11 E-value=20 Score=31.73 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=101.2
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCC
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~ 151 (477)
.+..+|.++.+.....-....+..+.+++.+.|+++.++......... . . ........++
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~------~-~-------------~~~~l~~~~v 65 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVRE------R-E-------------AVGQFFERRV 65 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHH------H-H-------------HHHHHHHTTC
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH------H-H-------------HHHHHHHCCC
Confidence 345679999876533222355667777888899999988754332110 0 0 0112234679
Q ss_pred cEEEEcCcc-hhhHHHHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceeeehhhHHHHHHHhHhhhccCCC
Q 011779 152 DLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (477)
Q Consensus 152 DiV~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 230 (477)
|.|++.... ....+..+...+ .|++..-..... .....+..+.........+++.+. ...
T Consensus 66 dgiIi~~~~~~~~~~~~~~~~~-----iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~~---G~~ 126 (291)
T 3egc_A 66 DGLILAPSEGEHDYLRTELPKT-----FPIVAVNRELRI-----------PGCGAVLSENVRGARTAVEYLIAR---GHT 126 (291)
T ss_dssp SEEEECCCSSCCHHHHHSSCTT-----SCEEEESSCCCC-----------TTCEEEEECHHHHHHHHHHHHHHT---TCC
T ss_pred CEEEEeCCCCChHHHHHhhccC-----CCEEEEecccCC-----------CCCCEEEECcHHHHHHHHHHHHHc---CCC
Confidence 988876543 222223222223 344432222210 112333333333344444444432 345
Q ss_pred CeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceE
Q 011779 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (477)
Q Consensus 231 ~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~ 310 (477)
++.++....+...... .....++ .-++.|++.+...+ ..+......+...+.+.+. +.++..
T Consensus 127 ~i~~i~~~~~~~~~~~-----R~~gf~~-~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----------~~~~~~ 188 (291)
T 3egc_A 127 RIGAIVGSAGLMTSRE-----RLKGFRA-AMSAAGLPVRQEWI-AAGGVRADNGRDGAIKVLT-----------GADRPT 188 (291)
T ss_dssp SEEEECSCTTSHHHHH-----HHHHHHH-HHHHTTCCCCGGGE-EC------CCHHHHHHHHT-----------C-CCCS
T ss_pred EEEEEeCCCCCcCHHH-----HHHHHHH-HHHHcCCCCCHHHe-EeCCCChhHHHHHHHHHHh-----------CCCCCc
Confidence 6777754332211100 0011122 22344655443323 2355666677655444332 336666
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCC--CCcEEEcccc
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKT 347 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l--~~~v~~~g~~ 347 (477)
.+++.++ .....+.+.+++.|+ ++.|.+.|+-
T Consensus 189 ai~~~~d-----~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 189 ALLTSSH-----RITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp EEEESSH-----HHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred EEEECCc-----HHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 7777765 344456666777776 4788899974
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=85.00 E-value=5.1 Score=31.03 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=70.0
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH----hcCEEEEcCCCCCCcccHHHHHHHH---c
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA---F 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~----~aDv~v~pS~~~~E~~g~~~lEAma---~ 381 (477)
.+++|+.+.. .....++...++.|. .|......++....+. ..|++++-... .+.-|+.+++.+. .
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 4 AKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKITP 76 (143)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCT
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 4677887752 456777777777663 3444333344444444 57888776542 4445666666554 3
Q ss_pred CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 382 QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
.+|+|. .+.... ..+.+..|..+++..|-+ .+++..+|..++...
T Consensus 77 ~~~ii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 77 HMAVII------LTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRK 124 (143)
T ss_dssp TCEEEE------EECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCeEEE------EECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHH
Confidence 677773 333322 233455678899999988 999999999988643
|
| >3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.93 E-value=2.4 Score=38.76 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=46.7
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhh----HHhhhhhhhhhcCcEEEeccch-----h
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE----VIYSLEHKMWDRGVQVISAKGQ-----E 143 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~~~-----~ 143 (477)
|+|||+|+... .+.....++|.+.||+|..+..+++....+ ...++.......|++++..... .
T Consensus 1 ~~mrivf~Gtp-------~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~ 73 (314)
T 3tqq_A 1 MSLKIVFAGTP-------QFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQ 73 (314)
T ss_dssp CCCEEEEEECS-------GGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHH
T ss_pred CCcEEEEECCC-------HHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHH
Confidence 46789888643 244455677777899987665443322111 1223445556788888754332 2
Q ss_pred hHHHhcCCcEEEEcC
Q 011779 144 TINTALKADLIVLNT 158 (477)
Q Consensus 144 ~~~~~~~~DiV~~~~ 158 (477)
...+..+||++++-.
T Consensus 74 ~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 74 EKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHTTCCSEEEEES
T ss_pred HHHHhcCCCEEEEcC
Confidence 445678999999864
|
| >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} | Back alignment and structure |
|---|
Probab=84.70 E-value=24 Score=32.31 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCC--CcEEEccccCC
Q 011779 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--DRVHFVNKTLT 349 (477)
Q Consensus 284 g~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~--~~v~~~g~~~~ 349 (477)
..+...+++..+.+ ++|+...+++.+. .......+.+++.|+. +.|.+.|+-..
T Consensus 188 ~~~~~~~~~~~~L~-------~~~~~~aI~~~~d-----~~a~g~~~al~~~G~~vP~di~vvg~d~~ 243 (350)
T 3h75_A 188 NRERAYRQAQQLLK-------RYPKTQLVWSAND-----EMALGAMQAARELGRKPGTDLLFSGVNSS 243 (350)
T ss_dssp CHHHHHHHHHHHHH-------HCTTEEEEEESSH-----HHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred cHHHHHHHHHHHHH-------hCCCcCEEEECCh-----HHHHHHHHHHHHcCCCCCCCeEEEecCCC
Confidence 34555566666655 4578888888765 3444566667777764 77999997533
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=84.41 E-value=6 Score=30.66 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=71.8
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh--cCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~--aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++|+.+.. .....++...++.+....|......++....+.. .|++++-... .+.-|+.+++.+..
T Consensus 5 ~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~~ 79 (144)
T 3kht_A 5 SKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGAN 79 (144)
T ss_dssp CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSSTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcccc
Confidence 46788888763 4667778888877654335444443444444433 5887765541 44457778887765
Q ss_pred -CCCEEeeccccccccCCCc---eEEeecCCceeeecCC-CCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~-d~~~~~la~~i~~ll~ 432 (477)
++|+|+ .+..... .+.+..|..+++..|- + .+++.++|..+++
T Consensus 80 ~~~pii~------~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 80 QHTPIVI------LTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTCCEEE------EETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred cCCCEEE------EeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 578883 2222221 2344567889999998 7 9999999998875
|
| >3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=83.84 E-value=6.4 Score=33.53 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhC--CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccch---------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------- 142 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~--------- 142 (477)
||||.++.. |....+..+.++|.+. +++|..+..+.+.. .........|++++.....
T Consensus 3 m~ki~vl~s-----G~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~~~~~~~ 71 (212)
T 3av3_A 3 MKRLAVFAS-----GSGTNFQAIVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYPSKAAFE 71 (212)
T ss_dssp CEEEEEECC-----SSCHHHHHHHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSSSHHHHH
T ss_pred CcEEEEEEE-----CCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCcccccchhhhH
Confidence 467777763 3335677888888876 68887555443332 2344556778988753321
Q ss_pred ---hhHHHhcCCcEEEEcC
Q 011779 143 ---ETINTALKADLIVLNT 158 (477)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (477)
....+..+||+|++-.
T Consensus 72 ~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEch
Confidence 2334568999999865
|
| >2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=83.54 E-value=7.2 Score=29.08 Aligned_cols=71 Identities=14% Similarity=0.329 Sum_probs=46.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHH--cCCCEE
Q 011779 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVL 386 (477)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma--~G~PvI 386 (477)
++++|.|.... =..+.+++.+++.|++-.|.-.+ ..++...+..+|+++.... -.. -..-++..+ .++||+
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~~~~D~Ii~t~~--l~~-~~~~~~~~~~~~~~pv~ 80 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIA-ETRLSEVVDRFDVVLLAPQ--SRF-NKKRLEEITKPKGIPIE 80 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEEC-STTHHHHTTTCSEEEECSC--CSS-HHHHHHHHHHHHTCCEE
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhcCCCCEEEECCc--cHH-HHHHHHHHhcccCCCEE
Confidence 55677776555 56788999999988853443333 3677777889999887665 221 133344433 689998
|
| >2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=82.89 E-value=5.9 Score=34.56 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCCh-----hhHHhhhhhhhhhcCcEE-E--ecc---
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE-----DEVIYSLEHKMWDRGVQV-I--SAK--- 140 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-----~~~~~~~~~~~~~~g~~v-~--~~~--- 140 (477)
|++++||+|.+. |.-.+..+--....+.+.|++|.+++...+... ..............|+.. . .++
T Consensus 1 ~~~~~vL~v~aH--PDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~~ 78 (242)
T 2ixd_A 1 MSGLHILAFGAH--ADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRG 78 (242)
T ss_dssp -CCCSEEEEESS--TTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTC
T ss_pred CCCccEEEEEeC--CChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCCC
Confidence 456788888843 333223333334455668999988884333221 111222333344456542 1 111
Q ss_pred ---------chhhHHHhcCCcEEEEcC
Q 011779 141 ---------GQETINTALKADLIVLNT 158 (477)
Q Consensus 141 ---------~~~~~~~~~~~DiV~~~~ 158 (477)
....+++..+||+|+++.
T Consensus 79 ~~~~~~~~~~l~~~ir~~~PdvV~t~~ 105 (242)
T 2ixd_A 79 LYMKEEYIREIVKVIRTYKPKLVFAPY 105 (242)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 112455667899988875
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=82.54 E-value=6.7 Score=30.78 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH-----------hcCEEEEcCCCCCCcccHHHH
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-----------AIDVLVQNSQAWGECFGRITI 376 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~-----------~aDv~v~pS~~~~E~~g~~~l 376 (477)
..+++|+.+.. .....+++..++.|....|......++....+. ..|++++-..- .+.-|+.++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 35778888763 467778888888876445665554455555552 36777765431 455577777
Q ss_pred HHHHc-----CCCEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 377 EAMAF-----QLPVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 377 EAma~-----G~PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
+.+.. ++|+|+ .+.... ..+....|..+++..|-+ .+++.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~------~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVI------LTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEE------EecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77664 578873 233322 123445677899999888 999999998874
|
| >4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=82.02 E-value=7.8 Score=32.88 Aligned_cols=76 Identities=21% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCccEEEEEeccCCCCchhhHHHHHHHHHHhCC--cEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc--------
Q 011779 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------- 141 (477)
Q Consensus 72 ~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~-------- 141 (477)
|.++||+++.+ |....+..+..++.+.+ ++|..+.++.+.... .+.....|++++....
T Consensus 5 m~~~ri~vl~S-----G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~------l~~A~~~gIp~~~~~~~~~~~r~~ 73 (209)
T 4ds3_A 5 MKRNRVVIFIS-----GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGG------LAKAEAAGIATQVFKRKDFASKEA 73 (209)
T ss_dssp -CCEEEEEEES-----SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTH------HHHHHHTTCCEEECCGGGSSSHHH
T ss_pred CCCccEEEEEE-----CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHH------HHHHHHcCCCEEEeCccccCCHHH
Confidence 66778888874 33467888888887643 687766654433211 2345667888875432
Q ss_pred ----hhhHHHhcCCcEEEEcC
Q 011779 142 ----QETINTALKADLIVLNT 158 (477)
Q Consensus 142 ----~~~~~~~~~~DiV~~~~ 158 (477)
.....+..+||+|++-.
T Consensus 74 ~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 74 HEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEec
Confidence 11344668999999865
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=80.97 E-value=3.7 Score=35.41 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=39.6
Q ss_pred ccCCCccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCc-EEEeccchhhHH-
Q 011779 69 LSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVISAKGQETIN- 146 (477)
Q Consensus 69 ~~~~~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~- 146 (477)
...++.|+|++.. |....=..+++.|.++|++|.++...... ...+...++ .++.......+.
T Consensus 16 ~~~l~~~~ilVtG------atG~iG~~l~~~L~~~G~~V~~~~R~~~~---------~~~~~~~~~~~~~~~Dl~~~~~~ 80 (236)
T 3e8x_A 16 NLYFQGMRVLVVG------ANGKVARYLLSELKNKGHEPVAMVRNEEQ---------GPELRERGASDIVVANLEEDFSH 80 (236)
T ss_dssp -----CCEEEEET------TTSHHHHHHHHHHHHTTCEEEEEESSGGG---------HHHHHHTTCSEEEECCTTSCCGG
T ss_pred ccCcCCCeEEEEC------CCChHHHHHHHHHHhCCCeEEEEECChHH---------HHHHHhCCCceEEEcccHHHHHH
Confidence 3445677876653 33345567888899999999999855322 112222355 554433221111
Q ss_pred HhcCCcEEEEcC
Q 011779 147 TALKADLIVLNT 158 (477)
Q Consensus 147 ~~~~~DiV~~~~ 158 (477)
...++|+|+...
T Consensus 81 ~~~~~D~vi~~a 92 (236)
T 3e8x_A 81 AFASIDAVVFAA 92 (236)
T ss_dssp GGTTCSEEEECC
T ss_pred HHcCCCEEEECC
Confidence 123688887654
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A | Back alignment and structure |
|---|
Probab=80.77 E-value=11 Score=29.54 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=66.4
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH---cCC
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 383 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma---~G~ 383 (477)
.+++|+.+.. .....+.......|. .|......++....+. ..|++++-... .+.-|..+++.+. ..+
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~~ 76 (155)
T 1qkk_A 4 PSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPDL 76 (155)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTTS
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCC
Confidence 4677777763 456677777777664 3443332223222222 36887765441 3444666666553 468
Q ss_pred CEEeeccccccccCCC---ceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCH
Q 011779 384 PVLLQKCLYQGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 434 (477)
Q Consensus 384 PvI~~~~~~~~~~~gg---~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~ 434 (477)
|+|+ .+.... ..+.+..|..+++..|-+ .+++...|..++...
T Consensus 77 pii~------ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 77 PMIL------VTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKR 122 (155)
T ss_dssp CEEE------EECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CEEE------EECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHH
Confidence 8883 222222 233445677889999888 999999999887643
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=80.68 E-value=12 Score=28.64 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=69.4
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc----
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~---- 381 (477)
..+++|+.+.. .....++...++.|. .|......++....+. ..|++++-..- .+.-|+.+++.+..
T Consensus 6 ~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 78 (140)
T 3grc_A 6 RPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSRT 78 (140)
T ss_dssp CSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGGG
T ss_pred CCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCccc
Confidence 45777877752 456677777777664 3444433334333433 35888775542 45557778877764
Q ss_pred -CCCEEeeccccccccCCC---ce-EEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 -QLPVLLQKCLYQGTAAGG---TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 -G~PvI~~~~~~~~~~~gg---~~-e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .+.... .. +....|..+++..|-+ .+++.++|..+++
T Consensus 79 ~~~~ii~------~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~ 126 (140)
T 3grc_A 79 RDLAIVV------VSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAID 126 (140)
T ss_dssp TTCEEEE------ECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred CCCCEEE------EecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 678883 222221 12 4455677889999988 9999999998876
|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A | Back alignment and structure |
|---|
Probab=80.36 E-value=10 Score=28.70 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=69.7
Q ss_pred ceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHH-H--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-A--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~-~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
..+++|+.+.. .....+++..++.|.. .+.......+....+ . ..|++++-..- .+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 35678887763 4677778888877753 344333323333333 2 36887764431 45557788887754
Q ss_pred --CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|+|+ .|..... .+.+..|..+++..|-+ .+++.+++..++.
T Consensus 79 ~~~~pii~------~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 79 FKEIPIIM------ITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLG 126 (129)
T ss_dssp CTTCCEEE------EESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHC
T ss_pred CCCCeEEE------EeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhc
Confidence 578883 3333322 23445678899999988 9999999998875
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} | Back alignment and structure |
|---|
Probab=80.27 E-value=6.6 Score=30.52 Aligned_cols=111 Identities=7% Similarity=0.117 Sum_probs=69.9
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHHc---
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 381 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma~--- 381 (477)
...+++|+.+.. .....+.......|. .|......++....+. ..|++++-... .+.-|+.+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 457888888763 355666666666654 3444443344444443 37888876542 44457778887764
Q ss_pred --CCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 --QLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 --G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
++|+|+ .+..... .+.+..|..+++..|-+ .+++.+.|..++.
T Consensus 80 ~~~~pii~------ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 127 (147)
T 2zay_A 80 TASIPVIA------LSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLK 127 (147)
T ss_dssp TTTSCEEE------EESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEE------EeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 678873 3333222 22345677899999988 9999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d1rzua_ | 477 | c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte | 2e-10 | |
| d2bisa1 | 437 | c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro | 7e-10 | |
| d2iw1a1 | 370 | c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt | 3e-05 | |
| d1uqta_ | 456 | c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA | 2e-04 |
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Score = 60.4 bits (145), Expect = 2e-10
Identities = 40/308 (12%), Positives = 94/308 (30%), Gaps = 41/308 (13%)
Query: 181 LWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240
+ + +++ L L V+ + + +TAE+ + + + + G
Sbjct: 191 IEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEF-GMGLEGVIGSRAHVLHGIVNGID 249
Query: 241 KELMEVAEDNVA-----------KRVLREHVRESLGVRNED-LLFAIINSVSRGKGQDLF 288
++ A D++ + + ++ V E + ++ LF +I+ ++ KG DL
Sbjct: 250 ADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLM 309
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
+ E + L V++G+ E L + + V
Sbjct: 310 AEAVDEIVSL---------GGRLVVLGAGD---VALEGALLAAASRHHGRVGVAIGYNEP 357
Query: 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT 408
A D + E G + A+ + + GG + V++
Sbjct: 358 LSHLMQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPV-------VARTGGLADTVIDAN 408
Query: 409 TGLLHPVGKEGIT-------PLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 461
L G+ L + I + + + +K A
Sbjct: 409 HAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSAGLY 468
Query: 462 AVVLKEVL 469
A + +++
Sbjct: 469 AALYSQLI 476
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Score = 58.3 bits (139), Expect = 7e-10
Identities = 50/294 (17%), Positives = 85/294 (28%), Gaps = 24/294 (8%)
Query: 182 WWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTA--EYWKNRTRERLRIKMPDTYVVHLGN 239
+ G Y P G I VT + R V G
Sbjct: 160 AFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGI 219
Query: 240 SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299
+ ++ ++ + G+ I KG D+ L + I
Sbjct: 220 DCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIE-----I 274
Query: 300 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDV 359
K E + +IIG + R+ + + + V ++D
Sbjct: 275 LSSKKEFQEMRFIIIGKGDPELEGW---ARSLEEKHGNVKVITEMLSREFVRELYGSVDF 331
Query: 360 LVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEG 419
++ S FG + +EAM + +A GG +I+ N T G+L G
Sbjct: 332 VIIPSYFE--PFGLVALEAMCLGAIPI-------ASAVGGLRDIITNET-GILVKAGD-- 379
Query: 420 ITPLAKNIVK-LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 472
LA I+K L + +R F AER + ++
Sbjct: 380 PGELANAILKALELSRSDLSKFRENCKKRAMS-FSWEKSAERYVKAYTGSIDRA 432
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (101), Expect = 3e-05
Identities = 47/394 (11%), Positives = 110/394 (27%), Gaps = 31/394 (7%)
Query: 76 LVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV 134
+V ++ GG M +A + G V T + + ++ +
Sbjct: 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTN 60
Query: 135 QVISAKGQETINTALKA---DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191
+A+ + LK D +V + G + + +++ + Y
Sbjct: 61 HGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRY 120
Query: 192 FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV 251
+ G + + ++ + + ++ G + +
Sbjct: 121 RHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGI----YPDRKYSE 176
Query: 252 AKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311
RE R+ G++ + L + S KG D + + E ++ L
Sbjct: 177 QIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQD 236
Query: 312 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF 371
+ A+ ++ + + L Y A +++ + G
Sbjct: 237 KPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAG--- 293
Query: 372 GRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431
LPVL TA G + + G + L + + K
Sbjct: 294 -----------LPVL-------TTAVCGYAHYIADANCGTVIAEPFS-QEQLNEVLRKAL 334
Query: 432 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465
T R+ + + + E+ A ++
Sbjct: 335 TQSPLRMAWAENARHYADT-QDLYSLPEKAADII 367
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 32/250 (12%), Positives = 71/250 (28%), Gaps = 27/250 (10%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG---KGQDL 287
T V +G + + L + E V+ I SV R KG
Sbjct: 219 RTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQ-------NIFSVERLDYSKGLPE 271
Query: 288 FLHSFYESLELIKEKKLEVPSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
++ LE + ++ A D+ A +L N + +
Sbjct: 272 RFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTP 331
Query: 347 TLTVAPYLAAIDVLVQNSQAWG-------ECFGRITIEAMAFQLPVLLQKCLYQGTAAGG 399
+ + ++ + + + E +A Q P + + G
Sbjct: 332 LYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLV--LSQFAG 389
Query: 400 TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMA 458
+ + L+ +A + + T + R++ + + + +H
Sbjct: 390 AANELTSA---LIVNPYD--RDEVAAALDRALTMSLAERISRHAEMLDVIVK-NDINHWQ 443
Query: 459 ERIAVVLKEV 468
E LK++
Sbjct: 444 ECFISDLKQI 453
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d1rzua_ | 477 | Glycogen synthase 1, GlgA {Agrobacterium tumefacie | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 100.0 | |
| d2bfwa1 | 196 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 99.96 | |
| d1uqta_ | 456 | Trehalose-6-phosphate synthase, OtsA {Escherichia | 99.94 | |
| d2f9fa1 | 166 | First mannosyl transferase WbaZ {Archaeoglobus ful | 99.91 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 99.52 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 99.29 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 99.2 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 99.16 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 98.87 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 98.58 | |
| d2acva1 | 461 | Triterpene UDP-glucosyl transferase UGT71G1 {Medic | 98.46 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 98.3 | |
| d2pq6a1 | 473 | (Iso)flavonoid glycosyltransferase {Medicago trunc | 98.25 | |
| d2c1xa1 | 450 | UDP glucose:flavonoid 3-o-glucosyltransferase {Gra | 98.23 | |
| d1l5wa_ | 796 | Maltodextrin phosphorylase (MALP) {Escherichia col | 98.17 | |
| d2gj4a1 | 824 | Glycogen phosphorylase {Rabbit (Oryctolagus cunicu | 98.09 | |
| d2vcha1 | 471 | Hydroquinone glucosyltransferase {Thale cress (Ara | 97.82 | |
| d1pswa_ | 348 | ADP-heptose LPS heptosyltransferase II {Escherichi | 97.37 | |
| d1ygpa_ | 876 | Glycogen phosphorylase {Baker's yeast (Saccharomyc | 97.31 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.64 | |
| d1uana_ | 227 | Hypothetical protein TT1542 {Thermus thermophilus | 91.66 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.08 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 86.23 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 84.7 | |
| d2hy5a1 | 130 | Sulfurtransferase DsrE {Chromatium vinosum [TaxId: | 82.69 | |
| d2hy5b1 | 132 | Intracellular sulfur oxidation protein DsrF {Chrom | 82.02 | |
| d2d1pa1 | 128 | tRNA 2-thiouridine synthesizing protein D, TusD {E | 81.78 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 81.71 | |
| d2d1pb1 | 119 | tRNA 2-thiouridine synthesizing protein C, TusC {E | 81.66 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 81.32 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 81.29 |
| >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=5.7e-43 Score=348.88 Aligned_cols=366 Identities=16% Similarity=0.117 Sum_probs=251.2
Q ss_pred cEEEEEeccCCC----CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhh---------h-----hhhhhcCcEE
Q 011779 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL---------E-----HKMWDRGVQV 136 (477)
Q Consensus 75 ~~Il~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~---------~-----~~~~~~g~~v 136 (477)
|||++|+.++.| ||...++..|+++|+++||+|+|+++..+.........+ . ......++++
T Consensus 1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (477)
T d1rzua_ 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL 80 (477)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEEEEeccCCceEEEEEEEECCeeE
Confidence 789999987655 787789999999999999999999865432110000000 0 0001122222
Q ss_pred Eeccc----------------------h-------h---hHH----HhcCCcEEEEcCcchhhHHHHHhhhCCCccccce
Q 011779 137 ISAKG----------------------Q-------E---TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (477)
Q Consensus 137 ~~~~~----------------------~-------~---~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (477)
+.+.. . . .+. ...+|||||+|+.............+. ...++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~~~~~~~~~--~~ip~ 158 (477)
T d1rzua_ 81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAET--PEIPS 158 (477)
T ss_dssp EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSS--CCCCE
T ss_pred EEecChhhcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhcccCCCCCEEEecchhHHHHHHHHHHhhC--CCCCE
Confidence 21100 0 0 011 125899999997544433332222222 22588
Q ss_pred eeeeeecccccc-hhh-------------------------HhhcccccccceeeehhhHHHHHHHh-----HhhhccCC
Q 011779 181 LWWIHEMRGHYF-KLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKM 229 (477)
Q Consensus 181 i~~~h~~~~~~~-~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~ 229 (477)
++++|+...... ... ........+.+++.+....+...... ........
T Consensus 159 V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~ 238 (477)
T d1rzua_ 159 LLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRA 238 (477)
T ss_dssp EEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTG
T ss_pred EEEEecccccccCCHHHHHHhhcchhhcccccccccchhHHHHHHHHhhhhhhhccHHHHHHHHHHhcCcchhhhhhhcc
Confidence 899997531110 000 01112345556666655544322110 01112334
Q ss_pred CCeEEEecCCchhhhhhhhhh-----------HHHHHHHHHHHHhhCCCC-CCeEEEEEeecccCCCHHHHHHHHHHHHH
Q 011779 230 PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (477)
Q Consensus 230 ~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~r~~~~~~~-~~~~il~vGrl~~~Kg~~~ll~a~~~l~~ 297 (477)
.++.+|+||+|.+.|.|.... .........++...++++ +.++|+++||+.++||++.|++|+.++.+
T Consensus 239 ~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~KG~~~Ll~a~~~~~~ 318 (477)
T d1rzua_ 239 HVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS 318 (477)
T ss_dssp GGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH
T ss_pred ccEEEEECCcchhhccccccccccccchhhhHHHhhhhHHHHHHhcccccCCccEEEEEeeeeecCCcHHHHHHHHHHHh
Confidence 679999999999888664221 112233556777777764 45789999999999999999999999876
Q ss_pred HHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHH
Q 011779 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (477)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~ 375 (477)
.+.+++++|.|+. ....++++...+ +.++|.+.+.. +++..+|++||++|+||. +|+||+++
T Consensus 319 ---------~~~~l~~~G~G~~---~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~aD~~v~PS~--~E~fglv~ 382 (477)
T d1rzua_ 319 ---------LGGRLVVLGAGDV---ALEGALLAAASR--HHGRVGVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQ 382 (477)
T ss_dssp ---------TTCEEEEEECBCH---HHHHHHHHHHHH--TTTTEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHH
T ss_pred ---------hCCeEEEEecCCc---hHHHHHHHHHhh--cCCeEEEEcccChhHHHHHHHhCccccCCcc--ccCCCHHH
Confidence 5788999999842 334444554444 45789988865 456678999999999999 89999999
Q ss_pred HHHHHcCCCEEeeccccccccCCCceEEeecCC---------ceeeecCCCCCHHHHHHHHHHHHh---CHHHHHHHHHH
Q 011779 376 IEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGT---------TGLLHPVGKEGITPLAKNIVKLAT---HVERRLTMGKR 443 (477)
Q Consensus 376 lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~---------~G~l~~~~d~~~~~la~~i~~ll~---~~~~~~~~~~~ 443 (477)
+|||++|+||| +|+.||++|+|.|++ +|++++++| +++|+++|.++++ |++.+++|+++
T Consensus 383 lEAma~G~PvV-------as~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d--~~~la~ai~~~l~~~~~~~~~~~~~~~ 453 (477)
T d1rzua_ 383 LYALRYGCIPV-------VARTGGLADTVIDANHAALASKAATGVQFSPVT--LDGLKQAIRRTVRYYHDPKLWTQMQKL 453 (477)
T ss_dssp HHHHHHTCEEE-------EESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS--HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCCEE-------EcCCCCCcceeecCCccccccCCCceEEeCCCC--HHHHHHHHHHHHhhhCCHHHHHHHHHH
Confidence 99999999999 999999999998865 899999999 9999999988775 89999999988
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 011779 444 GYERVKEIFQEHHMAERIAVVLKEVLK 470 (477)
Q Consensus 444 a~~~~~~~fs~~~~~~~~~~~~~~~~~ 470 (477)
+. +++|||++++++|+++|+++++
T Consensus 454 a~---~~~fsw~~~a~~~~~lY~~ll~ 477 (477)
T d1rzua_ 454 GM---KSDVSWEKSAGLYAALYSQLIS 477 (477)
T ss_dssp HH---TCCCBHHHHHHHHHHHHHHHTC
T ss_pred HH---HhhCCHHHHHHHHHHHHHHHhC
Confidence 75 3679999999999999999863
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-42 Score=332.86 Aligned_cols=344 Identities=16% Similarity=0.137 Sum_probs=246.4
Q ss_pred EEEEec-cCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc---------------
Q 011779 77 VLLVSH-ELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------- 140 (477)
Q Consensus 77 Il~v~~-~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~--------------- 140 (477)
|+|+.. +++.||+++++.+++++|+++||+|+|+|....... ..+++++..+
T Consensus 2 i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (370)
T d2iw1a1 2 VAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC------------PKAFELIQVPVKSHTNHGRNAEYYA 69 (370)
T ss_dssp EEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC------------CTTCEEEECCCCCSSHHHHHHHHHH
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHCCCEEEEEecCCCCCC------------CCceEEEEcCccccccchhhHHHHH
Confidence 778885 455699999999999999999999999984422110 1123332211
Q ss_pred chhhHHHhcCCcEEEEcCcchhhHHHHHhhhCCCcc-----ccceeeeeeecccccchhh-HhhcccccccceeeehhhH
Q 011779 141 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRV-----LPNVLWWIHEMRGHYFKLD-YVKHLPLVAGAMIDSHVTA 214 (477)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~ 214 (477)
......+..++|+||.+........ ......... ........+.....+.... ........+.+++.+....
T Consensus 70 ~~~~~~~~~~~d~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (370)
T d2iw1a1 70 WVQNHLKEHPADRVVGFNKMPGLDV--YFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQI 147 (370)
T ss_dssp HHHHHHHHSCCSEEEESSCCTTCSE--EECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHH
T ss_pred HHHHHHHhcccceeeecccCchHHH--HHHhhcccceeeeeecCccccccchhchhHHHHHHHHhhccCceEEEecHHHH
Confidence 1123345689999998764321100 000000000 0000000000000000000 0011123344454444444
Q ss_pred HHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHHHHHHH
Q 011779 215 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 294 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~ 294 (477)
.. +...++.+..++.++|||+|.+.+.+...+. .++.+|..+|+++++++++++||+.++||++.+++|+++
T Consensus 148 ~~----~~~~~~~~~~~i~vi~~gv~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~ 219 (370)
T d2iw1a1 148 AD----FQKHYQTEPERFQILPPGIYPDRKYSEQIPN----SREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALAS 219 (370)
T ss_dssp HH----HHHHHCCCGGGEEECCCCCCGGGSGGGSCTT----HHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred HH----HHHhcCCCcceEEEEEeecccccccccCchh----hhhhhhhccCCCccceEEEEEeccccccchhhhcccccc
Confidence 33 3446778888999999999988765543332 257788999999999999999999999999999999998
Q ss_pred HHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHH
Q 011779 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (477)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~ 374 (477)
+.+ +.++..+.++|++. ..+.+++++++++..++++|+|+++++.++|+.||++|+||. .|+||++
T Consensus 220 l~~-------~~~~~~~~ii~g~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~--~E~~~~~ 285 (370)
T d2iw1a1 220 LPE-------SLRHNTLLFVVGQD-----KPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEAAGIV 285 (370)
T ss_dssp SCH-------HHHHTEEEEEESSS-----CCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCSSCHH
T ss_pred ccc-------ccccceeeeccccc-----cccccccccccccccccccccccccccccccccccccccccc--cccccce
Confidence 866 34566777777652 345688889999999999999999999999999999999998 8999999
Q ss_pred HHHHHHcCCCEEeeccccccccCCCceEEeecCCceeee-cCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Q 011779 375 TIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLH-PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 375 ~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~-~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 453 (477)
++|||++|+||| +++.||.+|++.++.+|+++ +++| +++++++|.++++|++++++|+++|+++++ .|+
T Consensus 286 ~~EAma~G~PvI-------~s~~~g~~e~i~~~~~G~l~~~~~d--~~~la~~i~~ll~d~~~~~~~~~~ar~~~~-~~~ 355 (370)
T d2iw1a1 286 LLEAITAGLPVL-------TTAVCGYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYAD-TQD 355 (370)
T ss_dssp HHHHHHHTCCEE-------EETTSTTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HSC
T ss_pred eeecccCCeeEE-------EeCCCChHHHhcCCCceEEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-HhC
Confidence 999999999999 99999999999999999765 6677 999999999999999999999999999884 588
Q ss_pred HHHHHHHHHHHHH
Q 011779 454 EHHMAERIAVVLK 466 (477)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (477)
+..+.+++.++|+
T Consensus 356 ~~~~~~~~~~ii~ 368 (370)
T d2iw1a1 356 LYSLPEKAADIIT 368 (370)
T ss_dssp CSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 8778888777775
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=2.1e-41 Score=333.91 Aligned_cols=368 Identities=18% Similarity=0.138 Sum_probs=259.1
Q ss_pred cEEEEEeccCCC---CchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhh----------hhhhcCcEEEeccc
Q 011779 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH----------KMWDRGVQVISAKG 141 (477)
Q Consensus 75 ~~Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~----------~~~~~g~~v~~~~~ 141 (477)
||||+++..++| ||.++++..|+++|+++||+|+|+|+..+............ .....++.++....
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGG 80 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTSSCCEEEEEEECSSSEEEEEEEEEEETTEEEEEEES
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecCCCccchhhccceeecccccceeeeeeccCCeEEEecCc
Confidence 899999987776 89999999999999999999999996543321110000000 00111233321110
Q ss_pred ------------h----h--------------hHH-HhcCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeecccc
Q 011779 142 ------------Q----E--------------TIN-TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH 190 (477)
Q Consensus 142 ------------~----~--------------~~~-~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~ 190 (477)
. + .+. ....||+||+|+...+.. ....+.. ...++++++|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDiIh~~~~~~~~~-~~~~~~~---~~~~~v~~~h~~~~~ 156 (437)
T d2bisa1 81 GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFA-GALIKKY---FKIPAVFTIHRLNKS 156 (437)
T ss_dssp SGGGCSCTTCSHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSEEEEETGGGHHH-HHHHHHH---HCCCEEEEESSCCCC
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECChhhhhH-hhhhhcc---ccCceeEEEeecccc
Confidence 0 0 000 124689999998655433 2222221 125788899986543
Q ss_pred cchhhHhh------------------cccccccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHH
Q 011779 191 YFKLDYVK------------------HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (477)
Q Consensus 191 ~~~~~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~ 252 (477)
.+...... .....+.+++.+..... .....++....++.+|+||+|.+.|.+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~----~~~~~~~~~~~ki~vi~~g~d~~~~~~~~~~~~ 232 (437)
T d2bisa1 157 KLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLI----DEWGFFRNFEGKITYVFNGIDCSFWNESYLTGS 232 (437)
T ss_dssp CEEHHHHHHTTCGGGCCSSEECHHHHHHHHSSEEEESCHHHHH----HTHHHHGGGTTTEEECCCCCCTTTSCGGGCCSC
T ss_pred ccchhhhhhccchhhhhHHHHHHHHHHHHhhhhhcccchhhhh----hhhhhhccccCceEEEecccccccccccccchh
Confidence 32211110 01122333333332222 222345566788999999999998877655544
Q ss_pred HHHHHHHHHHhhCCCCCCeEEEEEeeccc-CCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHH
Q 011779 253 KRVLREHVRESLGVRNEDLLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY 331 (477)
Q Consensus 253 ~~~~~~~~r~~~~~~~~~~~il~vGrl~~-~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~ 331 (477)
.......++++++.. ++++++++||+.. .||++.+++|+..+.... +.++++|+|+|.|.+ .....++.+
T Consensus 233 ~~~~~~~~~~~~~~~-~~~~i~~~G~~~~~~Kg~~~ll~a~~~~~~~~-----~~~~~~lvi~G~~~~---~~~~~~~~~ 303 (437)
T d2bisa1 233 RDERKKSLLSKFGMD-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK-----EFQEMRFIIIGKGDP---ELEGWARSL 303 (437)
T ss_dssp HHHHHHHHHHHTTCC-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTSG-----GGGGEEEEEECCBCH---HHHHHHHHH
T ss_pred hHHHHHhhhhhhhcc-CCceEEEeecccccchhHHHHHhhhccccccc-----ccccceeeeeccccc---ccccchhhh
Confidence 455567888899975 5578899999875 799999999999875411 347899999999852 223333444
Q ss_pred HHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCc
Q 011779 332 VMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTT 409 (477)
Q Consensus 332 ~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~ 409 (477)
.+. ..+++.+.|.. +++..+|+.||++++||. .|++|++++|||++|+||| +++.||..|++.+ ++
T Consensus 304 ~~~--~~~~~~~~~~~~~~~~~~~~~~adi~v~~s~--~e~~~~~~~Eama~G~Pvi-------~~~~g~~~e~i~~-~~ 371 (437)
T d2bisa1 304 EEK--HGNVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI-------ASAVGGLRDIITN-ET 371 (437)
T ss_dssp HHT--CTTEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHTTTCEEE-------EESCTTHHHHCCT-TT
T ss_pred ccc--cccceeccccCcHHHHHHHHhhhcccccccc--ccccchHHHHHHHCCCCEE-------EeCCCCcHHhEEC-Cc
Confidence 333 34567777764 779999999999999999 9999999999999999999 9999999998875 58
Q ss_pred eeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcC
Q 011779 410 GLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 474 (477)
Q Consensus 410 G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~ 474 (477)
|++++++| +++++++|.++++ |++.+++|++++++.+ ++|||++++++++++|++++++...
T Consensus 372 G~~~~~~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~~~~a~~~~~iY~~~i~r~~~ 434 (437)
T d2bisa1 372 GILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRAFD 434 (437)
T ss_dssp CEEECTTC--HHHHHHHHHHHHTTTTSCTHHHHHHHHHHH-HHSCHHHHHHHHHHHHHTCSCCBCT
T ss_pred EEEECCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhHhh
Confidence 99999998 9999999999987 7889999999999987 4699999999999999999876543
|
| >d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.96 E-value=2.8e-29 Score=218.27 Aligned_cols=192 Identities=20% Similarity=0.249 Sum_probs=158.9
Q ss_pred CCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecc-cCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEec
Q 011779 238 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (477)
Q Consensus 238 gvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~-~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~ 316 (477)
|||.+.|.+..........+..+++++|++ ++.+|+|+||+. ++||++.+++|++.+.+.. .+++++|+|+|.
T Consensus 1 gid~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~il~~Grl~~~~Kg~~~li~a~~~l~~~~-----~~~~~~l~i~G~ 74 (196)
T d2bfwa1 1 GIDCSFWNESYLTGSRDERKKSLLSKFGMD-EGVTFMFIGRFDRGQKGVDVLLKAIEILSSKK-----EFQEMRFIIIGK 74 (196)
T ss_dssp CCCTTTSSGGGSCSCHHHHHHHHHHHTTCC-SCEEEEEESCBCSSSSCHHHHHHHHHHHTTSG-----GGGGEEEEEECC
T ss_pred CcChhhcCCCCCCchhHHHHHHHHHHhCCC-CCCEEEEEcCCCccccCHHHHHHHHHhhhccc-----CCCCeEEEEEee
Confidence 789999987755555555678899999994 667788999997 5899999999999885411 348899999998
Q ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeecccccc
Q 011779 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQG 394 (477)
Q Consensus 317 g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~ 394 (477)
|.+ .+...++.+.+.+ .+.+.+.|.. +++..+|+.||++|+||. .|++|.+++|||+||+||| +
T Consensus 75 g~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~di~v~ps~--~e~~~~~~~Eam~~G~pvI-------~ 140 (196)
T d2bfwa1 75 GDP---ELEGWARSLEEKH--GNVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI-------A 140 (196)
T ss_dssp BCH---HHHHHHHHHHHHC--TTEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE-------E
T ss_pred ccc---chhhhhhhhhhcc--ceeEEeeeccccccchhccccccccccccc--cccccccchhhhhcCceee-------e
Confidence 842 2334444444443 3456677765 679999999999999999 9999999999999999999 9
Q ss_pred ccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhcC
Q 011779 395 TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 453 (477)
Q Consensus 395 ~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~-~~~~~~~~~~~a~~~~~~~fs 453 (477)
++.|+..|++.+ .+|++++++| +++++++|.+++. +++.+++|+++|++++++ ||
T Consensus 141 ~~~~~~~e~i~~-~~g~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~-fs 196 (196)
T d2bfwa1 141 SAVGGLRDIITN-ETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 196 (196)
T ss_dssp ESCHHHHHHCCT-TTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred cCCCccceeecC-CceeeECCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-CC
Confidence 999999998855 5999999998 9999999999888 899999999999999854 76
|
| >d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Trehalose-6-phosphate synthase, OtsA domain: Trehalose-6-phosphate synthase, OtsA species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.3e-26 Score=220.54 Aligned_cols=295 Identities=11% Similarity=0.031 Sum_probs=208.6
Q ss_pred cCCcEEEEcCcchhhHHHHHhhhCCCccccceeeeeeeccccc-------chhhHhhcccccccceeeehhhHHHHHHHh
Q 011779 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (477)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (477)
..-|+|++|....... ...++...+. .++.+.+|...+.. +.......+-.++.+...+...+..+....
T Consensus 121 ~~~d~iwvhDyhl~ll-p~~lR~~~~~--~~i~~flH~pfP~~~~fr~lp~~~~il~~ll~~d~igf~~~~~~~~fl~~~ 197 (456)
T d1uqta_ 121 QDDDIIWIHDYHLLPF-AHELRKRGVN--NRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCL 197 (456)
T ss_dssp CTTCEEEEESGGGTTH-HHHHHHTTCC--SCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCeEEEeccchhhh-HHHHHHhCCC--CcEEEEeCCCCCChHHhccCcchHHHHHHhhccccccccCHHHHHHHHHHH
Confidence 3459999998655443 3444444443 46778888754321 112222233344544444444444443332
Q ss_pred Hhhhcc------------CCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 222 ~~~~~~------------~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
...++. ..-++.++|+|+|.+.|......... ....+++.++ .++.+|+++||+.+.||++.++
T Consensus 198 ~~ll~~~~~~~~~i~~~gr~v~v~~~p~GID~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~il~V~Rld~~KGi~~~l 273 (456)
T d1uqta_ 198 SNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLP-PKLAQLKAEL---KNVQNIFSVERLDYSKGLPERF 273 (456)
T ss_dssp HHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCC-HHHHHHHHHT---TTCEEEEEECCBCGGGCHHHHH
T ss_pred HHHhCcccccCCeEEecCceeeeeeecCcccchhhhhhcccHHH-HHHHHHHHhc---CCCeEEEEeCCCchhhchHHHH
Confidence 222221 12367899999999988765433221 2234555555 4778999999999999999999
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHH----HHHHHHHHHh-------cCCCCcEEEcccc--CCHHHHHHh
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF----ESELRNYVMQ-------KKIQDRVHFVNKT--LTVAPYLAA 356 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~----~~~l~~~~~~-------~~l~~~v~~~g~~--~~l~~~~~~ 356 (477)
+|+.++++..++ -..++.++.+|.++..+.+. ..++.+++.+ .+..+.+.+.+.. +++..+|+.
T Consensus 274 ~A~~~~l~~~p~---~~~~v~lv~~~~~~~~~~~~~~~~~~ev~~lv~~in~~~~~~~~~~~v~~~~~~~~~~l~a~~~~ 350 (456)
T d1uqta_ 274 LAYEALLEKYPQ---HHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 350 (456)
T ss_dssp HHHHHHHHHCGG---GTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcc---ccccEEEEEEcCCcccchHHHHHHHHHHHHHHHHHHhhhccCCCCceeeccCCcCHHHHhHHHhh
Confidence 999999884332 11347788888765443332 2333333332 3566778888764 789999999
Q ss_pred cCEEEEcCCCCCCcccHHHHHHHHcCCC-----EEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHH
Q 011779 357 IDVLVQNSQAWGECFGRITIEAMAFQLP-----VLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 431 (477)
Q Consensus 357 aDv~v~pS~~~~E~~g~~~lEAma~G~P-----vI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll 431 (477)
||++++||. .||||++++|||+||+| +| +|+.+|..+.+. .|++++|.| ++++|++|.+++
T Consensus 351 Adv~v~~s~--~EG~~lv~~Ea~a~~~p~~~g~lI-------lS~~~G~~~~l~---~g~lVnP~d--~~~~A~ai~~aL 416 (456)
T d1uqta_ 351 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLV-------LSQFAGAANELT---SALIVNPYD--RDEVAAALDRAL 416 (456)
T ss_dssp CSEEEECCS--SBSCCHHHHHHHHHSCTTSCCEEE-------EETTBGGGGTCT---TSEEECTTC--HHHHHHHHHHHH
T ss_pred hceeecCCc--cCCCCcHHHHHHHhCCCCCCCcEE-------EeCCCCCHHHhC---CeEEECcCC--HHHHHHHHHHHH
Confidence 999999999 99999999999999999 89 999999999883 489999999 999999999999
Q ss_pred h-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 432 T-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 432 ~-~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+ +++.++++.+++++.+. .||+..+++.+++-++++
T Consensus 417 ~~~~~er~~~~~~~~~~v~-~~~~~~W~~~fl~~l~~~ 453 (456)
T d1uqta_ 417 TMSLAERISRHAEMLDVIV-KNDINHWQECFISDLKQI 453 (456)
T ss_dssp TCCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHhh
Confidence 8 77889999999999995 599999999988887764
|
| >d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: First mannosyl transferase WbaZ species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=1.6e-25 Score=188.69 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=118.8
Q ss_pred EEEEEeecccCCCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CC
Q 011779 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LT 349 (477)
Q Consensus 272 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~ 349 (477)
.++|+||+.++||++.+++|++++ ++.+++|+|.+...+ ..+.+.+.+.+.. .++|+|+|++ ++
T Consensus 14 ~~l~iGrl~~~K~~~~~i~a~~~l-----------~~~~l~ivg~~~~~~--~~~~~~~~~~~~~-~~~v~~~g~~~~~~ 79 (166)
T d2f9fa1 14 FWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFSKGD--HAERYARKIMKIA-PDNVKFLGSVSEEE 79 (166)
T ss_dssp CEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCCTTS--THHHHHHHHHHHS-CTTEEEEESCCHHH
T ss_pred EEEEEecCccccCHHHHHHHHHHh-----------cCCeEEEEEeccccc--chhhhhhhhcccc-cCcEEEeecccccc
Confidence 366999999999999999999876 678999999875332 3444544454443 4699999987 77
Q ss_pred HHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecCCCCCHHHHHHHHHH
Q 011779 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 429 (477)
Q Consensus 350 l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ 429 (477)
+..+|+.||++|+||. .|+||++++|||++|+||| +++.++..|++.++.+|+++++ | +++++++|.+
T Consensus 80 ~~~~~~~ad~~i~ps~--~e~~~~~~~Ea~~~g~pvi-------~s~~~~~~e~i~~~~~g~~~~~-d--~~~~~~~i~~ 147 (166)
T d2f9fa1 80 LIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVI-------AVNEGGFKETVINEKTGYLVNA-D--VNEIIDAMKK 147 (166)
T ss_dssp HHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEE-------EESSHHHHHHCCBTTTEEEECS-C--HHHHHHHHHH
T ss_pred cccccccccccccccc--cccccccccccccccccce-------eecCCcceeeecCCcccccCCC-C--HHHHHHHHHH
Confidence 9999999999999999 9999999999999999999 9999999999999999998765 6 9999999999
Q ss_pred HHhCHH
Q 011779 430 LATHVE 435 (477)
Q Consensus 430 ll~~~~ 435 (477)
++++++
T Consensus 148 l~~~~~ 153 (166)
T d2f9fa1 148 VSKNPD 153 (166)
T ss_dssp HHHCTT
T ss_pred HHhCHH
Confidence 999865
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.2e-12 Score=122.90 Aligned_cols=321 Identities=14% Similarity=0.075 Sum_probs=168.6
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc-------------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~------------- 141 (477)
|||++.+. +.||--.....++++|.++||+|.+++...+.. ...+...|+++..++.
T Consensus 1 kkili~~~--GtGGHv~~a~al~~~L~~~G~eV~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (351)
T d1f0ka_ 1 KRLMVMAG--GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME--------ADLVPKHGIEIDFIRISGLRGKGIKALIA 70 (351)
T ss_dssp CEEEEECC--SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH--------HHHGGGGTCEEEECCCCCCTTCCHHHHHT
T ss_pred CEEEEEcC--CcHHHHHHHHHHHHHHHhCCCEEEEEEeCCcch--------hhcccccCCcEEEEECCCcCCCCHHHHHH
Confidence 68988764 223333568899999999999999998554321 1122334444432211
Q ss_pred -----------hhhHHHhcCCcEEEEcCcchhhHH-HHHhhhCCCccccceeeeeeecccccchhhHhhcccccccceee
Q 011779 142 -----------QETINTALKADLIVLNTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (477)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (477)
...+....++|++.+......... ..+....+ |++.+.++........ ......+....
T Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~i-----p~~~~~~~~~~~~~~~---~~~~~~~~~~~- 141 (351)
T d1f0ka_ 71 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGI-----PVVLHEQNGIAGLTNK---WLAKIATKVMQ- 141 (351)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTC-----CEEEEECSSSCCHHHH---HHTTTCSEEEE-
T ss_pred HHHHHHHhHHHHHHHhhccccceeeecccchhhhhhhhhhhccc-----ceeecccccccchhHH---Hhhhhcceeec-
Confidence 023445689999988654333322 22233333 3433333322211111 11111111111
Q ss_pred ehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCHHHHH
Q 011779 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (477)
Q Consensus 210 s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~~~ll 289 (477)
. ..........+.++.......... .+.+.....++..++.+|.-. |-..+.
T Consensus 142 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~gs~---g~~~~~ 193 (351)
T d1f0ka_ 142 A--------------FPGAFPNAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQ---GARILN 193 (351)
T ss_dssp S--------------STTSSSSCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTT---CCHHHH
T ss_pred c--------------ccccccceeEEcCCcccccccchh-----------HHhhhhcccCCcccccccccc---hhhhhH
Confidence 0 011122344555555544332221 112233345666665555422 333333
Q ss_pred HHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCC
Q 011779 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (477)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E 369 (477)
+.+.+....+. .....++++... ........... ....++...++.+++.++|+.||++|. -
T Consensus 194 ~~~~~~~~~l~------~~~~~i~~~~~~----~~~~~~~~~~~--~~~~~~~v~~f~~~~~~lm~~adl~It------~ 255 (351)
T d1f0ka_ 194 QTMPQVAAKLG------DSVTIWHQSGKG----SQQSVEQAYAE--AGQPQHKVTEFIDDMAAAYAWADVVVC------R 255 (351)
T ss_dssp HHHHHHHHHHG------GGEEEEEECCTT----CHHHHHHHHHH--TTCTTSEEESCCSCHHHHHHHCSEEEE------C
T ss_pred HHHHHhhhhhc------ccceeeeecccc----chhhhhhhhcc--cccccceeeeehhhHHHHHHhCchhhc------c
Confidence 44444333322 223344444432 12222222222 233577888999999999999999994 3
Q ss_pred cccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 011779 370 CFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 448 (477)
Q Consensus 370 ~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 448 (477)
+-+.++.||+++|+|+|+.|.+. +. +....++.+++...|..++..+.+.+.+.++|..+ +++.+.+|++++++..
T Consensus 256 ~G~~T~~Eal~~g~P~I~iP~~~-~~~~Q~~NA~~l~~~G~~~~~~~~~~~~e~l~~~l~~l--~~~~~~~~~~~~~~~~ 332 (351)
T d1f0ka_ 256 SGALTVSEIAAAGLPALFVPFQH-KDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS 332 (351)
T ss_dssp CCHHHHHHHHHHTCCEEECCCCC-TTCHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC
T ss_pred ccchHHHHHHHhCCceeeeeccc-CCchHHHHHHHHHHCCCEEEechhhCCHHHHHHHHHhh--CHHHHHHHHHHHHccC
Confidence 34689999999999999433221 11 11122455666668888876665578888887765 6777888999888643
Q ss_pred HHhcCHHHHHHHHHHH
Q 011779 449 KEIFQEHHMAERIAVV 464 (477)
Q Consensus 449 ~~~fs~~~~~~~~~~~ 464 (477)
.....+++++.++++
T Consensus 333 -~~~~a~~i~~~i~~l 347 (351)
T d1f0ka_ 333 -IPDATERVANEVSRV 347 (351)
T ss_dssp -CTTHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHH
Confidence 222344455544443
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.29 E-value=1.8e-11 Score=116.63 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCC----ceEEeecCCcee
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGG----TTEIVVNGTTGL 411 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg----~~e~v~~~~~G~ 411 (477)
.+++||.+.++. ....++..+|++| ..|...++.||+++|+|+| +....+ ..+.+++...|.
T Consensus 283 ~~~~~v~~~~~~-p~~~ll~~~~~~I------~hgG~~t~~Eal~~GvP~l-------~~P~~~DQ~~na~~v~~~G~g~ 348 (401)
T d1rrva_ 283 DDRDDCFAIDEV-NFQALFRRVAAVI------HHGSAGTEHVATRAGVPQL-------VIPRNTDQPYFAGRVAALGIGV 348 (401)
T ss_dssp CCCTTEEEESSC-CHHHHGGGSSEEE------ECCCHHHHHHHHHHTCCEE-------ECCCSBTHHHHHHHHHHHTSEE
T ss_pred cCCCCEEEEecc-CcHHHhhhccEEE------ecCCchHHHHHHHhCCCEE-------EecccccHHHHHHHHHHCCCEE
Confidence 456899999996 4678899999999 4566789999999999999 544443 455666667899
Q ss_pred eecCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011779 412 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 469 (477)
Q Consensus 412 l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 469 (477)
..+..+.++++|+++|.+++ +++.+++ +++.. +....+ -+.+..+++++.+
T Consensus 349 ~l~~~~~~~~~L~~ai~~vl-~~~~r~~----a~~~~-~~~~~~-g~~~aa~~ie~~~ 399 (401)
T d1rrva_ 349 AHDGPTPTFESLSAALTTVL-APETRAR----AEAVA-GMVLTD-GAAAAADLVLAAV 399 (401)
T ss_dssp ECSSSCCCHHHHHHHHHHHT-SHHHHHH----HHHHT-TTCCCC-HHHHHHHHHHHHH
T ss_pred EcCcCCCCHHHHHHHHHHHh-CHHHHHH----HHHHH-HHHhhc-CHHHHHHHHHHHh
Confidence 98887766899999999998 4554433 33322 333322 3344445555443
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.20 E-value=4.2e-11 Score=113.63 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=66.9
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccc-cccCCCceEEeecCCceeeec
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQ-GTAAGGTTEIVVNGTTGLLHP 414 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~-~~~~gg~~e~v~~~~~G~l~~ 414 (477)
..+++|.+.++. +...++..+|++|..+. ..++.|||++|+|+|+.+.... ......+.+.+.+...|..++
T Consensus 267 ~~~~~v~i~~~~-p~~~ll~~a~~~v~hgG------~~t~~Eal~~G~P~v~~P~~~d~~~eQ~~nA~~l~~~G~g~~l~ 339 (391)
T d1pn3a_ 267 DDGADCFVVGEV-NLQELFGRVAAAIHHDS------AGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVD 339 (391)
T ss_dssp SCCTTCCEESSC-CHHHHHTTSSCEEEESC------HHHHHHHHHHTCCEEEECSSCCBTTBCCHHHHHHHHHTSEEEEC
T ss_pred cCCCCEEEeccc-CHHHHHhhccEEEecCc------hHHHHHHHHhCCcEEEeccccCCcchHHHHHHHHHHCCCEEEcC
Confidence 345789999997 57788999999996654 5789999999999994322210 000122345566667899888
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 011779 415 VGKEGITPLAKNIVKLATH 433 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~ 433 (477)
..+.++++++++|.+++++
T Consensus 340 ~~~~~~~~l~~~i~~~l~~ 358 (391)
T d1pn3a_ 340 GPVPTIDSLSAALDTALAP 358 (391)
T ss_dssp CSSCCHHHHHHHHHHHTST
T ss_pred cCCCCHHHHHHHHHHHhCH
Confidence 8776689999999999964
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=99.16 E-value=1.1e-09 Score=103.79 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=67.3
Q ss_pred CCCCcEEEccccCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeecCCceeeecC
Q 011779 336 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVNGTTGLLHPV 415 (477)
Q Consensus 336 ~l~~~v~~~g~~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~~~~G~l~~~ 415 (477)
..++||++.++. +...+|..+|++| ..|...++.||+++|+|+|+.+. ..|.....+.+++.+.|..++.
T Consensus 282 ~~~~nv~~~~~~-p~~~~l~~~~~~V------~hgG~~t~~Eal~~GvP~v~~P~---~~DQ~~na~~l~~~G~g~~l~~ 351 (401)
T d1iira_ 282 DDGADCFAIGEV-NHQVLFGRVAAVI------HHGGAGTTHVAARAGAPQILLPQ---MADQPYYAGRVAELGVGVAHDG 351 (401)
T ss_dssp SCGGGEEECSSC-CHHHHGGGSSEEE------ECCCHHHHHHHHHHTCCEEECCC---STTHHHHHHHHHHHTSEEECSS
T ss_pred cCCCCEEEEecc-CHHHHHhhcCEEE------ecCCchHHHHHHHhCCCEEEccc---cccHHHHHHHHHHCCCEEEcCc
Confidence 346799999997 4678899999999 55668899999999999993211 1232234555666668998888
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 011779 416 GKEGITPLAKNIVKLATH 433 (477)
Q Consensus 416 ~d~~~~~la~~i~~ll~~ 433 (477)
.+.++++++++|.+++++
T Consensus 352 ~~~~~~~l~~ai~~~l~~ 369 (401)
T d1iira_ 352 PIPTFDSLSAALATALTP 369 (401)
T ss_dssp SSCCHHHHHHHHHHHTSH
T ss_pred CCCCHHHHHHHHHHHhCH
Confidence 766699999999999953
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=98.87 E-value=2.3e-08 Score=93.47 Aligned_cols=332 Identities=14% Similarity=0.078 Sum_probs=187.2
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHh-CCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE---Eec----------
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV---ISA---------- 139 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~---------- 139 (477)
||||++++..-+-- -.+..+.++|.+ .++++.++..+.-. +. ....+...|++. +..
T Consensus 2 MkkI~~v~GtR~e~---~kl~pli~~l~~~~~~~~~li~tG~H~--~~----~~~~~~~~~i~~d~~l~~~~~~~s~~~~ 72 (373)
T d1v4va_ 2 MKRVVLAFGTRPEA---TKMAPVYLALRGIPGLKPLVLLTGQHR--EQ----LRQALSLFGIQEDRNLDVMQERQALPDL 72 (373)
T ss_dssp CEEEEEEECSHHHH---HHHHHHHHHHHTSTTEEEEEEECSSCH--HH----HHHHHHTTTCCCSEECCCCSSCCCHHHH
T ss_pred CCeEEEEEEhhHHH---HHHHHHHHHHHhCCCCCEEEEEccCCh--hh----hhCcchhcCCCccccCCCCCCCCCHHHH
Confidence 56899998432110 356778999986 47898877643221 11 112222233321 111
Q ss_pred -----cchhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeecc--ccc---chhh-Hhhcc-ccccc
Q 011779 140 -----KGQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMR--GHY---FKLD-YVKHL-PLVAG 205 (477)
Q Consensus 140 -----~~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~--~~~---~~~~-~~~~~-~~~~~ 205 (477)
.....+....+||+|+++......... ++....+ |+ .++|+-. +.. +... .+... +.++.
T Consensus 73 ~~~~~~~~~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~i-----pi-~HiegG~rsg~~~~~~~de~~R~~iskls~~ 146 (373)
T d1v4va_ 73 AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGI-----PV-GHVEAGLRSGNLKEPFPEEANRRLTDVLTDL 146 (373)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTC-----CE-EEETCCCCCSCTTSSTTHHHHHHHHHHHCSE
T ss_pred HHHHHHHHhhhhhhcCcccccccccCccchhHHHHHHHhhh-----hh-eeecccccccccccCcchhhhhhhhccccce
Confidence 011345567899999998743333222 2233333 32 2333311 111 1122 22222 23344
Q ss_pred ceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhhCCCCCCeEEEEEeecccCCCH
Q 011779 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 285 (477)
Q Consensus 206 ~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~il~vGrl~~~Kg~ 285 (477)
.++.+....+.+. ..|.++.++.++-+..- +.+... ....+.....+.++++++..-|....++.
T Consensus 147 hf~~t~~~~~~L~-----~~Ge~~~~I~~vG~p~~-D~i~~~---------~~~~~~~~~~~~~~~~lvt~hr~~n~~~~ 211 (373)
T d1v4va_ 147 DFAPTPLAKANLL-----KEGKREEGILVTGQTGV-DAVLLA---------AKLGRLPEGLPEGPYVTVTMHRRENWPLL 211 (373)
T ss_dssp EEESSHHHHHHHH-----TTTCCGGGEEECCCHHH-HHHHHH---------HHHCCCCTTCCSSCEEEECCCCGGGGGGH
T ss_pred eeecchhhhhhhh-----hhcccccceeecccchh-hHHHhh---------hhhcccccccccccceeEEeccccccchH
Confidence 4555555555544 55788888888776521 111110 11112223455677888877777767777
Q ss_pred HHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEEEEc
Q 011779 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (477)
Q Consensus 286 ~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~v~p 363 (477)
..+.+++..+.+ ...++.+++..... ........+.. ...+++.++... .+...+++.|++++-.
T Consensus 212 ~~~~~~~~~~~~-------~~~~~~~i~p~~~~---~~~~~~~~~~~---~~~~n~~~~~~l~~~~~l~ll~~s~~vign 278 (373)
T d1v4va_ 212 SDLAQALKRVAE-------AFPHLTFVYPVHLN---PVVREAVFPVL---KGVRNFVLLDPLEYGSMAALMRASLLLVTD 278 (373)
T ss_dssp HHHHHHHHHHHH-------HCTTSEEEEECCSC---HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTEEEEEES
T ss_pred HHHHHHHHHHhh-------hcccceeeeeeccc---ccchhhhhhhh---cccccceeeccchHHHHHHHhhhceeEecc
Confidence 777787777765 44566666554331 12233333333 333688888764 6777889999999866
Q ss_pred CCCCCCcccHHHHHHHHcCCCEEeeccccccc-cCCCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHHHHH
Q 011779 364 SQAWGECFGRITIEAMAFQLPVLLQKCLYQGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 442 (477)
Q Consensus 364 S~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~-~~gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~~~~ 442 (477)
| |..+.||.++|+||| .- +.|.-.+-++.|.+ .++.. | .+++.+++..++.+++.+..+..
T Consensus 279 S-------ssgi~Ea~~lg~P~I-------nir~~~eRqeg~~~g~n-vlv~~-d--~~~I~~~i~~~l~~~~~~~~~~~ 340 (373)
T d1v4va_ 279 S-------GGLQEEGAALGVPVV-------VLRNVTERPEGLKAGIL-KLAGT-D--PEGVYRVVKGLLENPEELSRMRK 340 (373)
T ss_dssp C-------HHHHHHHHHTTCCEE-------ECSSSCSCHHHHHHTSE-EECCS-C--HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred c-------chhhhcchhhcCcEE-------EeCCCccCHHHHhcCee-EEcCC-C--HHHHHHHHHHHHcCHHHHhhccc
Confidence 6 457889999999999 55 44555555555533 44444 4 89999999999999987776533
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q 011779 443 RGYERVKEIFQEHHMAERIAVVLKEVLKK 471 (477)
Q Consensus 443 ~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 471 (477)
...-|.--+.++++.+.+.+-++.
T Consensus 341 -----~~npYGdG~as~rI~~~L~~~~~~ 364 (373)
T d1v4va_ 341 -----AKNPYGDGKAGLMVARGVAWRLGL 364 (373)
T ss_dssp -----SCCSSCCSCHHHHHHHHHHHHTTS
T ss_pred -----CCCCCCCCHHHHHHHHHHHHHhCC
Confidence 223355455666666666665543
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.58 E-value=5.3e-06 Score=77.11 Aligned_cols=330 Identities=13% Similarity=0.095 Sum_probs=165.4
Q ss_pred CccEEEEEeccCCCCchh-hHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE-Ee--cc-------
Q 011779 73 KSKLVLLVSHELSLSGGP-LLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-IS--AK------- 140 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~--~~------- 140 (477)
++|||++|+..- ++ -.+..+.++|.+. +.++.++..+.-.. .. .......++.. +. ..
T Consensus 1 ~k~Ki~~v~GtR----~e~~kl~pli~~l~~~~~~~~~li~tG~H~~---~~---~~~~~~~~i~~~~~~~~~~~~~~~~ 70 (377)
T d1o6ca_ 1 KKLKVMTVFGTR----PEAIKMAPLVLELKKYPEIDSYVTVTAQHRQ---ML---DQVLDAFHIKPDFDLNIMKERQTLA 70 (377)
T ss_dssp CCEEEEEEECSH----HHHHHHHHHHHHGGGCTTEEEEEEECCSCGG---GT---HHHHHHTTCCCSEECCCCCTTCCHH
T ss_pred CCceEEEEEEch----HhHHHHHHHHHHHHhCCCCCEEEEEeCCCHH---HH---HHHHhhcCCCCceeeecCCCCCCHH
Confidence 468999999321 11 3467889999875 67888777432111 11 11112222211 11 10
Q ss_pred --------chhhHHHhcCCcEEEEcCcchhhHHH--HHhhhCCCccccceeeeeeeccccc-----chhh-Hhhcc-ccc
Q 011779 141 --------GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHY-----FKLD-YVKHL-PLV 203 (477)
Q Consensus 141 --------~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~-----~~~~-~~~~~-~~~ 203 (477)
....+....+||+|+++......... ++....+ |+ .++|+-.... +... .+... +.+
T Consensus 71 ~~~~~~i~~~~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~I-----pi-~HiegG~~s~~~~~~~~de~~R~~iskls 144 (377)
T d1o6ca_ 71 EITSNALVRLDELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQI-----AV-GHVEAGLRTGNKYSPFPEELNRQMTGAIA 144 (377)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTC-----EE-EEESCCCCCSCTTTTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhcccceeEeeecccccchhhhhhhhccc-----eE-EEEecccccccccccCchhhhccccccce
Confidence 01245567899999999744333222 2233333 33 3344422111 1122 22222 344
Q ss_pred ccceeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhhhhhHHHHHHHHHHHHhh-CCCCCCeEEEEEeecccC
Q 011779 204 AGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL-GVRNEDLLFAIINSVSRG 282 (477)
Q Consensus 204 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~il~vGrl~~~ 282 (477)
+..++.+....+.+. ..|.++.++.++.+..-.......... .....+ ....++++++..-|....
T Consensus 145 ~~hf~~t~~~~~~L~-----~~G~~~~~I~~vG~~~~D~i~~~~~~~--------~~~~~~~~~~~~~~ilvt~Hr~~~~ 211 (377)
T d1o6ca_ 145 DLHFAPTGQAKDNLL-----KENKKADSIFVTGNTAIDALNTTVRDG--------YSHPVLDQVGEDKMILLTAHRRENL 211 (377)
T ss_dssp SEEEESSHHHHHHHH-----HTTCCGGGEEECCCHHHHHHHHHCCSS--------CCCSTTTTTTTSEEEEECC------
T ss_pred eEEeecchhhhhhhh-----hhccccceEeeccchhHHHHHHHHHHH--------HhhhhhhhccCCceEEEEecccccc
Confidence 445566666665555 457888889998875322211110000 000011 112445666665554432
Q ss_pred -CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHH-HHhcCCCCcEEEcccc--CCHHHHHHhcC
Q 011779 283 -KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY-VMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (477)
Q Consensus 283 -Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~-~~~~~l~~~v~~~g~~--~~l~~~~~~aD 358 (477)
+.....+.++..+.. ...++.+++..... ...... .+.....++|.+.... .+...+++.|+
T Consensus 212 ~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~ 277 (377)
T d1o6ca_ 212 GEPMENMFKAIRRIVG-------EFEDVQVVYPVHLN-------PVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSH 277 (377)
T ss_dssp ----HHHHHHHHHHHH-------HCTTEEEEEC-----------CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHhhcc-------cccccccccccccc-------cccchhhhhccccccceEeccccchHHHHHHHhhhh
Confidence 223344444444433 33556665543321 112222 2233445789998875 67888899999
Q ss_pred EEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHH
Q 011779 359 VLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERR 437 (477)
Q Consensus 359 v~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~ 437 (477)
+++--|. -.+.||-.+|+|+| .-.. +.-.+-+..| +-.+++. | .+++.+++..++.++..+
T Consensus 278 ~vIgnSs-------s~i~Ea~~lg~P~I-------nir~~tERqe~~~~g-~nilv~~-~--~~~I~~~i~~~l~~~~~~ 339 (377)
T d1o6ca_ 278 FILTDSG-------GVQEEAPSLGKPVL-------VLRDTTERPEGVEAG-TLKLAGT-D--EENIYQLAKQLLTDPDEY 339 (377)
T ss_dssp EEEEC---------CHHHHGGGGTCCEE-------EECSCCC---CTTTT-SSEEECS-C--HHHHHHHHHHHHHCHHHH
T ss_pred eeecccc-------hhHHhhhhhhceEE-------EeCCCCcCcchhhcC-eeEECCC-C--HHHHHHHHHHHHhChHHH
Confidence 9996664 35889999999999 4433 3344544444 4456655 4 799999999999998776
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 011779 438 LTMGKRGYERVKEIFQEHHMAERIAVVLKEV 468 (477)
Q Consensus 438 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 468 (477)
+.+.+ ...-|.--..++++.+++..-
T Consensus 340 ~~~~~-----~~npYGdG~as~rI~~~L~~~ 365 (377)
T d1o6ca_ 340 KKMSQ-----ASNPYGDGEASRRIVEELLFH 365 (377)
T ss_dssp HHHHH-----CCCTTCCSCHHHHHHHHHHHH
T ss_pred hhhcc-----CCCCCCCChHHHHHHHHHHHh
Confidence 65422 222344444555555555443
|
| >d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Triterpene UDP-glucosyl transferase UGT71G1 species: Medicago truncatula [TaxId: 3880]
Probab=98.46 E-value=3.2e-06 Score=80.85 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=58.0
Q ss_pred CcEEEccccCCH-HHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeecCC
Q 011779 339 DRVHFVNKTLTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHPVG 416 (477)
Q Consensus 339 ~~v~~~g~~~~l-~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~~~ 416 (477)
+++.+..+.... .-.+..+|+|| .-|--.++.||+.+|+|+|+.+ . ..|.......+ +..+.|+..+..
T Consensus 330 ~n~~v~~~~pq~~~l~~p~~~~fI------tHGG~gs~~eAl~~GVP~l~~P--~-~~DQ~~nA~rlve~~G~G~~l~~~ 400 (461)
T d2acva1 330 GKGMICGWAPQVEVLAHKAIGGFV------SHCGWNSILESMWFGVPILTWP--I-YAEQQLNAFRLVKEWGVGLGLRVD 400 (461)
T ss_dssp CSEEEESSCCHHHHHHSTTEEEEE------ECCCHHHHHHHHHTTCCEEECC--C-STTHHHHHHHHHHTSCCEEESCSS
T ss_pred CCeEEEecCCHHHHHhcccCCEEE------ecCCccHHHHHHHcCCCEEeCC--c-ccchHHHHHHHHHHhCceEEeecc
Confidence 567776664221 12357889999 4455679999999999999311 1 22333344443 445678777643
Q ss_pred C------CCHHHHHHHHHHHHhC-HHHHH
Q 011779 417 K------EGITPLAKNIVKLATH-VERRL 438 (477)
Q Consensus 417 d------~~~~~la~~i~~ll~~-~~~~~ 438 (477)
. .+.+++++++.+++++ +..++
T Consensus 401 ~~~~~~~~t~~~l~~a~~~vl~~d~~~r~ 429 (461)
T d2acva1 401 YRKGSDVVAAEEIEKGLKDLMDKDSIVHK 429 (461)
T ss_dssp CCTTCCCCCHHHHHHHHHHHTCTTCTHHH
T ss_pred ccccCCccCHHHHHHHHHHHhhCCHHHHH
Confidence 2 2389999999999974 43443
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=0.00011 Score=67.82 Aligned_cols=336 Identities=12% Similarity=0.110 Sum_probs=172.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhC-CcEEEEEecCCCCChhhHHhhhhhhhhhcCcEE---Eec----c------
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV---ISA----K------ 140 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v---~~~----~------ 140 (477)
|||++|+..-+-- -.+..+.++|.+. +.++.++....-.. . ........++.. +.. .
T Consensus 1 MKi~~v~GtR~e~---~kl~pli~~l~~~~~~~~~li~tG~H~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (376)
T d1f6da_ 1 MKVLTVFGTRPEA---IKMAPLVHALAKDPFFEAKVCVTAQHRE---M---LDQVLKLFSIVPDYDLNIMQPGQGLTEIT 71 (376)
T ss_dssp CEEEEEECSHHHH---HHHHHHHHHHHHCTTCEEEEEECCTTGG---G---GHHHHHHTTCCCSEECCCCSSSSCHHHHH
T ss_pred CeEEEEEEhhHhH---HHHHHHHHHHHhCCCCCEEEEEcCCCHH---H---HHHHHHhcCCCCCcccccCCCCCCHHHHH
Confidence 6899998321100 3477889999775 68998887432211 1 111112222211 110 0
Q ss_pred -----chhhHHHhcCCcEEEEcCcchhhHHHH--HhhhCCCccccceeeeeeecc--ccc---c-hhhHhhcc-cccccc
Q 011779 141 -----GQETINTALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEMR--GHY---F-KLDYVKHL-PLVAGA 206 (477)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~h~~~--~~~---~-~~~~~~~~-~~~~~~ 206 (477)
....+....+||+|+++.........+ +....+ |+ .++|+-. +.. + ....+... +.++..
T Consensus 72 ~~~i~~~~~~~~~~kPD~v~v~GDr~e~la~a~aa~~~~i-----pi-~HiegG~~s~~~~~~~pde~~R~~iskls~~h 145 (376)
T d1f6da_ 72 CRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRI-----PV-GHVEAGLRTGDLYSPWPEEANRTLTGHLAMYH 145 (376)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTC-----CE-EEESCCCCCSCTTSSTTHHHHHHHHHHTCSEE
T ss_pred HHHHHhhHHHHHhccCcceeeeccccchhhHHHHHHhhCc-----eE-EEEecccccccccccCchhhhhhhhccceeEE
Confidence 112445678999999997443332222 222233 33 3455421 111 1 22222222 233444
Q ss_pred eeeehhhHHHHHHHhHhhhccCCCCeEEEecCCchhhhhhh-hhhHH-HHHHHHHHHHhhCCCC-CCeEEEEEeeccc-C
Q 011779 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVA-EDNVA-KRVLREHVRESLGVRN-EDLLFAIINSVSR-G 282 (477)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~-~~~~~-~~~~~~~~r~~~~~~~-~~~~il~vGrl~~-~ 282 (477)
++.+....+.+. ..|.++.++.++-+..= +.+... ..... ................ ++++++..=|... .
T Consensus 146 f~~~~~~~~~L~-----~~G~~~~~I~~vG~~~~-D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~ 219 (376)
T d1f6da_ 146 FSPTETSRQNLL-----RENVADSRIFITGNTVI-DALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFG 219 (376)
T ss_dssp EESSHHHHHHHH-----HTTCCGGGEEECCCHHH-HHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCC
T ss_pred EeccHHHHhHHH-----hcCCCccccceecCchH-HHHHHHHhhhhccchhhhhhhccccccCCCCceEEEecccchhhh
Confidence 555555555544 55888889999876532 211111 00000 0011122222223333 3344444333322 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEcccc--CCHHHHHHhcCEE
Q 011779 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (477)
Q Consensus 283 Kg~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~--~~l~~~~~~aDv~ 360 (477)
+....++.++..+.+ ...++.+++--... ........+. ....+++.+.... .+...+++.|+++
T Consensus 220 ~~~~~i~~~l~~~~~-------~~~~~~ii~p~~~~---~~~~~~~~~~---~~~~~ni~~~~~l~~~~fl~ll~~a~~v 286 (376)
T d1f6da_ 220 RGFEEICHALADIAT-------THQDIQIVYPVHLN---PNVREPVNRI---LGHVKNVILIDPQEYLPFVWLMNHAWLI 286 (376)
T ss_dssp HHHHHHHHHHHHHHH-------HCTTEEEEEECCBC---HHHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHCSEE
T ss_pred hhHHHHHHHHhhhhh-------hcceeEEecccccc---hhhhhhHhhh---hcccccceeeccccHHHHHHHHhhceEE
Confidence 444556666665544 33566666554321 0122222222 2334688888764 6677789999999
Q ss_pred EEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccC-CCceEEeecCCceeeecCCCCCHHHHHHHHHHHHhCHHHHHH
Q 011779 361 VQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 439 (477)
Q Consensus 361 v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~-gg~~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~~~~~~~~ 439 (477)
+-.|. ..+.||-.+|+|+| .-.. ..-++-+..+ +-.++++ | .+++.+++.+++.++..+..
T Consensus 287 ignSs-------sgi~Ea~~lg~P~I-------nir~~ter~~~~~~g-~~i~v~~-~--~~~I~~ai~~~l~~~~~~~~ 348 (376)
T d1f6da_ 287 LTDSG-------GIQEEAPSLGKPVL-------VMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQA 348 (376)
T ss_dssp EESSS-------GGGGTGGGGTCCEE-------ECSSCCSCHHHHHHT-SEEECCS-S--HHHHHHHHHHHHHCHHHHHH
T ss_pred EecCc-------chHhhHHHhCCCEE-------EcCCCccCccceecC-eeEECCC-C--HHHHHHHHHHHHhChHhhhh
Confidence 97774 45789999999999 4322 2234445443 4455544 4 89999999999988765443
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 011779 440 MGKRGYERVKEIFQEHHMAERIAVVLKE 467 (477)
Q Consensus 440 ~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 467 (477)
+. ....-|.--+.++++.+++++
T Consensus 349 ~~-----~~~npYGdG~as~rI~~iLk~ 371 (376)
T d1f6da_ 349 MS-----RAHNPYGDGQACSRILEALKN 371 (376)
T ss_dssp HH-----HSCCTTCCSCHHHHHHHHHHH
T ss_pred hc-----cCCCCCCCChHHHHHHHHHHh
Confidence 31 121235444566666666543
|
| >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: (Iso)flavonoid glycosyltransferase species: Medicago truncatula [TaxId: 3880]
Probab=98.25 E-value=5.1e-05 Score=72.36 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=76.2
Q ss_pred CCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeeec
Q 011779 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~~ 414 (477)
++||.+..+.. ...++ ..+++|| .-|-..++.||+.+|+|+|+. |. ..|.......+ +..+.|...+
T Consensus 345 ~~Nv~~~~~~P-q~~lL~hp~~~~fI------tHGG~~s~~Eal~~GVP~lv~--P~-~~DQ~~na~rv~~~~G~G~~l~ 414 (473)
T d2pq6a1 345 ADRGLIASWCP-QDKVLNHPSIGGFL------THCGWNSTTESICAGVPMLCW--PF-FADQPTDCRFICNEWEIGMEID 414 (473)
T ss_dssp TTTEEEESCCC-HHHHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEEC--CC-STTHHHHHHHHHHTSCCEEECC
T ss_pred cCceEEeeeCC-HHHHhcCCcCcEEE------ecCCccHHHHHHHcCCCEEec--cc-hhhhHHHHHHHHHHcCeEEeeC
Confidence 36899988864 34566 5788888 445567999999999999931 11 22333344444 3436788877
Q ss_pred CCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHH
Q 011779 415 VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE-----HHMAERIAVVLKEVL 469 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~-----~~~~~~~~~~~~~~~ 469 (477)
. +.+.++++++|.++++|+.. +++.++|++.. +.+-. ......+.+++++++
T Consensus 415 ~-~~t~~~l~~ai~~vl~d~~~-~~~r~~a~~l~-~~~~~a~~~gg~s~~~~~~~i~~~~ 471 (473)
T d2pq6a1 415 T-NVKREELAKLINEVIAGDKG-KKMKQKAMELK-KKAEENTRPGGCSYMNLNKVIKDVL 471 (473)
T ss_dssp S-SCCHHHHHHHHHHHHTSHHH-HHHHHHHHHHH-HHHHHHTSTTCHHHHHHHHHHHHTT
T ss_pred C-CcCHHHHHHHHHHHHcCChH-HHHHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 4 45599999999999999863 34566666543 22211 122344566666654
|
| >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: UDP glucose:flavonoid 3-o-glucosyltransferase species: Grape (Vitis vinifera) [TaxId: 29760]
Probab=98.23 E-value=6.2e-05 Score=71.41 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=62.5
Q ss_pred CCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec-CCceeeec
Q 011779 338 QDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN-GTTGLLHP 414 (477)
Q Consensus 338 ~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~-~~~G~l~~ 414 (477)
++|+.+..+... ..++ ..+|+|| .-|-..++.||+.+|+|+|+.+ . ..|.......+.+ .+.|...+
T Consensus 318 ~~nv~~~~~~pq-~~lL~hp~~~~fI------tHGG~~s~~eal~~GvP~v~~P--~-~~DQ~~na~rv~~~~G~G~~l~ 387 (450)
T d2c1xa1 318 RGYGMVVPWAPQ-AEVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRP--F-FGDQRLNGRMVEDVLEIGVRIE 387 (450)
T ss_dssp TTTEEEESCCCH-HHHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECC--C-STTHHHHHHHHHHTSCCEEECG
T ss_pred cccccccccCCh-HhhhccCceeEEE------ccCCccHHHHHHHcCCCEEecc--c-ccchHHHHHHHHHHcCcEEEec
Confidence 368888887543 3455 5678888 4445679999999999999311 1 2222233444544 47899888
Q ss_pred CCCCCHHHHHHHHHHHHhCHHH
Q 011779 415 VGKEGITPLAKNIVKLATHVER 436 (477)
Q Consensus 415 ~~d~~~~~la~~i~~ll~~~~~ 436 (477)
.++.+.+++.++|.++++|+..
T Consensus 388 ~~~~t~~~l~~ai~~vL~d~~y 409 (450)
T d2c1xa1 388 GGVFTKSGLMSCFDQILSQEKG 409 (450)
T ss_dssp GGSCCHHHHHHHHHHHHHSHHH
T ss_pred CCCcCHHHHHHHHHHHhcCcHH
Confidence 8766689999999999999753
|
| >d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Maltodextrin phosphorylase (MALP) species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=4.7e-05 Score=75.72 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=103.2
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHhhc-cCcCceEEEEEecCCCcchHHHHHHHHHHHhc--------
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK-LEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 335 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~-~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-------- 335 (477)
.++++.+.++++-|+..+|..++++.-...+.+.+++.. .....++|++.|.--|.+.+-.+ +.+++.+.
T Consensus 521 ~ldp~~LtigfaRRfa~YKR~~L~~~~i~~l~~~l~~~~~~~~~Pvq~IfaGKAhP~d~~gK~-iIk~I~~va~~in~dp 599 (796)
T d1l5wa_ 521 EINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKN-IIFAINKVADVINNDP 599 (796)
T ss_dssp CCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHH-HHHHHHHHHHHHHTCT
T ss_pred ccChhhccchhhhhhhhhhcccchhhhHHHHHHHHhcCcccCCCceEEEEcCCCCCchHHHHH-HHHHHHHHHHHhcCCh
Confidence 456889999999999999999996666666655555420 01124899999987655543333 32222211
Q ss_pred CCC--CcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 336 KIQ--DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 336 ~l~--~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
.+. .+|.|+..- +--..++.++||.+..++.-.|..|.+-+-||.-|.+.+ ++.-|...|+.++ ++|
T Consensus 600 ~~~~~~kVVFlenYdv~lA~~lv~g~DVwln~p~~p~EASGTSgMKaalNG~lnl-------stlDGw~vE~~~~vg~eN 672 (796)
T d1l5wa_ 600 LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV-------GTLDGANVEIAEKVGEEN 672 (796)
T ss_dssp TTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE-------ECSCTTHHHHHHHHCGGG
T ss_pred hhccceeEEEeCCCchHHHHHHhcccchhhhCCCCCcccCCchHHHHHHcCCeee-------ecccchHHHHHHhcCccc
Confidence 111 268888752 445556899999999888668999999999999999999 9999998888764 779
Q ss_pred eeeecC
Q 011779 410 GLLHPV 415 (477)
Q Consensus 410 G~l~~~ 415 (477)
|+++..
T Consensus 673 ~f~fG~ 678 (796)
T d1l5wa_ 673 IFIFGH 678 (796)
T ss_dssp SEECSC
T ss_pred eEEecC
Confidence 998853
|
| >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Oligosaccharide phosphorylase domain: Glycogen phosphorylase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.09 E-value=2.6e-05 Score=77.59 Aligned_cols=192 Identities=15% Similarity=0.078 Sum_probs=128.0
Q ss_pred CCCCCCeEEEEEeecccCCCHHHHHHHHHHHHHHHHh-hccCcCceEEEEEecCCCcchHHHHHHHHHHHhc----C---
Q 011779 265 GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE-KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK----K--- 336 (477)
Q Consensus 265 ~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~-~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~----~--- 336 (477)
.++++.+.++++-|+..+|...+.+.-.-.+..++++ .......+++++.|.--|.+..- +++.+++.+. +
T Consensus 545 ~ldp~~lfd~~arRfheYKRq~Ln~~~i~~ly~rlk~~~~~~~~P~q~IFaGKAhP~d~~g-K~iIk~I~~va~~in~dp 623 (824)
T d2gj4a1 545 HINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMA-KMIIKLITAIGDVVNHDP 623 (824)
T ss_dssp CCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHH-HHHHHHHHHHHHHHTTCT
T ss_pred CCCcchhhhhheeechhhhhhhhhHhhHHHHHHHhhhcccCCCCCeEEEEeCCCCCccHHH-HHHHHHHHHHHHHHhcCh
Confidence 4678889999999999999998833332222222222 10022358999999876555433 3333333221 1
Q ss_pred -CC--CcEEEccc--cCCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEeec--CCc
Q 011779 337 -IQ--DRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIVVN--GTT 409 (477)
Q Consensus 337 -l~--~~v~~~g~--~~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v~~--~~~ 409 (477)
+. .+|.|+.. ++--..++.++|+.+..|+.-.|..|..-+-||.-|.+-+ ++--|...|+.++ ++|
T Consensus 624 ~~~~~lkVvFlenY~v~lA~~li~g~Dvwln~p~~~~EASGTSgMK~alNGal~l-------stlDGwnvEi~~~vg~~N 696 (824)
T d2gj4a1 624 VVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTI-------GTMDGANVEMAEEAGEEN 696 (824)
T ss_dssp TTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEE-------ECSCTTHHHHHHHHCGGG
T ss_pred hhccceeEEEcCCCchHHHHHhhhhhhhhhcCCCCCcccCCcchhHHHHcCCeee-------ccccchHHHHHHhcCccc
Confidence 11 26888875 2445566899999999888768999999999999999999 9999998887764 678
Q ss_pred eeeecCCC----------CCHHHHHHH----------------------------------------------------H
Q 011779 410 GLLHPVGK----------EGITPLAKN----------------------------------------------------I 427 (477)
Q Consensus 410 G~l~~~~d----------~~~~~la~~----------------------------------------------------i 427 (477)
|+++-... .++.++.+. +
T Consensus 697 ~~~fG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~~~~~~~~~~~f~~l~~~l~~~D~y~v~~Df~~y~~~q~~v 776 (824)
T d2gj4a1 697 FFIFGMRVEDVDRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYVKCQERV 776 (824)
T ss_dssp SEECSCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTSTTTTHHHHHHHHHCCTTCTGGGHHHHHHHHHHH
T ss_pred EEEeCCChhhhhHHhhcCCCHHHHHhhCHHHHHHHHHhccccCCCCCchhHHHHHHHHhcCChhhhhccHHHHHHHHHHH
Confidence 88875431 113333221 2
Q ss_pred HHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 011779 428 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 465 (477)
Q Consensus 428 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 465 (477)
.....||+.+.+|...+...+ -.||-++++++|.+-+
T Consensus 777 ~~~Y~d~~~W~~~~~~nia~~-g~FssdR~i~eY~~~i 813 (824)
T d2gj4a1 777 SALYKNPREWTRMVIRNIATS-GKFSSDRTIAQYAREI 813 (824)
T ss_dssp HHHHTCHHHHHHHHHHHHTTC-GGGBHHHHHHHHHHHT
T ss_pred HHhhcCHHHHHHHHHHHHhcC-CCcChHHHHHHHHHHc
Confidence 223345777777777776665 5799999999887643
|
| >d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDPGT-like domain: Hydroquinone glucosyltransferase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.82 E-value=0.0014 Score=62.00 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCCcEEEccccCCHHHHH--HhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEeeccccccccCCCceEEe-ecCCceeee
Q 011779 337 IQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLLQKCLYQGTAAGGTTEIV-VNGTTGLLH 413 (477)
Q Consensus 337 l~~~v~~~g~~~~l~~~~--~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~~~~~~~~~~~gg~~e~v-~~~~~G~l~ 413 (477)
.++||.+.++... ..++ ..+++|| .-|-..++.||+.+|+|+|+. |. ..|.......+ +.-+.|...
T Consensus 332 ~~~nv~~~~w~Pq-~~lL~hp~~~~fV------tHGG~gS~~EAl~~GvP~v~~--P~-~~DQ~~nA~rv~e~lG~Gv~l 401 (471)
T d2vcha1 332 KKRGFVIPFWAPQ-AQVLAHPSTGGFL------THCGWNSTLESVVSGIPLIAW--PL-YAEQKMNAVLLSEDIRAALRP 401 (471)
T ss_dssp TTTEEEEESCCCH-HHHHHSTTEEEEE------ECCCHHHHHHHHHHTCCEEEC--CC-STTHHHHHHHHHHTTCCEECC
T ss_pred cCCCeeecccCCH-HHHhcCccCCEEE------ecCCccHHHHHHHcCCCEEEc--cc-ccccHHHHHHHHHHheeEEEE
Confidence 3578999998643 3577 4688888 445567999999999999931 11 12222233334 333567655
Q ss_pred cCCC---CCHHHHHHHHHHHHhCHH
Q 011779 414 PVGK---EGITPLAKNIVKLATHVE 435 (477)
Q Consensus 414 ~~~d---~~~~~la~~i~~ll~~~~ 435 (477)
...+ -+.++++++|.++++|++
T Consensus 402 ~~~~~~~~t~~~l~~ai~~vl~~~~ 426 (471)
T d2vcha1 402 RAGDDGLVRREEVARVVKGLMEGEE 426 (471)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHTSTH
T ss_pred ecCCCCcCCHHHHHHHHHHHhCCcH
Confidence 4432 247999999999999864
|
| >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: ADP-heptose LPS heptosyltransferase II domain: ADP-heptose LPS heptosyltransferase II species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.0068 Score=54.67 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=66.7
Q ss_pred HHHHHHhhCCCCCCeEEE-EEe-ecccCCC--HHHHHHHHHHHHHHHHhhccCcCceEEEEEecCCCcchHHHHHHHHHH
Q 011779 257 REHVRESLGVRNEDLLFA-IIN-SVSRGKG--QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (477)
Q Consensus 257 ~~~~r~~~~~~~~~~~il-~vG-rl~~~Kg--~~~ll~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (477)
+....++++...++..|+ ..| +....|. .+...+.+..+.+ .+.+++++|.. ...+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~k~wp~~~~~~L~~~l~~---------~~~~ivl~g~~-----~e~~~~~~~~ 232 (348)
T d1pswa_ 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSA-----KDHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCG-----GGHHHHHHHH
T ss_pred HHHHHHHhccccCCCeEEeccccchhhccccchHHHhhhHHHHhh---------cCCcccccccc-----chHHHHHHHH
Confidence 345566777766665444 443 3233454 3446666666654 45678888865 2333333333
Q ss_pred HhcC---CCCcEEEcccc--CCHHHHHHhcCEEEEcCCCCCCcccHHHHHHHHcCCCEEe
Q 011779 333 MQKK---IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLL 387 (477)
Q Consensus 333 ~~~~---l~~~v~~~g~~--~~l~~~~~~aDv~v~pS~~~~E~~g~~~lEAma~G~PvI~ 387 (477)
+... ...-+.+.|.. .++..+++.||++|.+.. ..+--|.++|+|+|+
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~Dt-------g~~HlAaa~g~p~i~ 285 (348)
T d1pswa_ 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-------GLMHVAAALNRPLVA 285 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-------HHHHHHHHTTCCEEE
T ss_pred HhhhcccccccccccCCccHHHHHHHHhcceeEeecCc-------cHHHHHHHcCCCEEE
Confidence 3221 11234455643 778889999999997765 356779999999994
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.64 E-value=0.31 Score=33.44 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=54.0
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCcEE
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~DiV 154 (477)
|||-|+ ..||. -+..||+.|.++|++|.---.... +....+...|++++.-.....+ .++|+|
T Consensus 2 ~~ihfi----GIgG~--GMs~LA~~L~~~G~~VsGSD~~~~--------~~t~~L~~~Gi~i~~gh~~~~i---~~~d~v 64 (89)
T d1j6ua1 2 MKIHFV----GIGGI--GMSAVALHEFSNGNDVYGSNIEET--------ERTAYLRKLGIPIFVPHSADNW---YDPDLV 64 (89)
T ss_dssp CEEEEE----TTTSH--HHHHHHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCCEESSCCTTSC---CCCSEE
T ss_pred cEEEEE----eECHH--HHHHHHHHHHhCCCeEEEEeCCCC--------hhHHHHHHCCCeEEeeeccccc---CCCCEE
Confidence 567666 34563 456689999999999988754322 3455678889988644332222 479999
Q ss_pred EEcCc--chhhHHHHHhhhCCC
Q 011779 155 VLNTA--VAGKWLDAVLKEDVP 174 (477)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~~~~ 174 (477)
+..+. .....+..+...++|
T Consensus 65 V~SsAI~~~npel~~A~~~gIp 86 (89)
T d1j6ua1 65 IKTPAVRDDNPEIVRARMERVP 86 (89)
T ss_dssp EECTTCCTTCHHHHHHHHTTCC
T ss_pred EEecCcCCCCHHHHHHHHcCCC
Confidence 88763 333455666666664
|
| >d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: LmbE-like superfamily: LmbE-like family: LmbE-like domain: Hypothetical protein TT1542 species: Thermus thermophilus [TaxId: 274]
Probab=91.66 E-value=0.38 Score=39.73 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=22.6
Q ss_pred ccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecC
Q 011779 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 113 (477)
||+||+|.+. |+-.+.-+--....+.+.|++|++++..
T Consensus 1 m~~VLvi~aH--PDDe~lg~GGtiak~~~~G~~V~vv~~T 38 (227)
T d1uana_ 1 MLDLLVVAPH--PDDGELGCGGTLARAKAEGLSTGILDLT 38 (227)
T ss_dssp CEEEEEEESS--TTHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEEEEeC--CChHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5789999843 2222222222234456789999888843
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.08 E-value=2 Score=29.60 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=54.1
Q ss_pred CccEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccchhhHHHhcCCc
Q 011779 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (477)
Q Consensus 73 ~~~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~D 152 (477)
+.++|.|+. .||. -+..||+.|.++||+|+---.... +....+...|+.++.-.....+ .++|
T Consensus 7 ~~~~ihfiG----igG~--GMs~LA~~L~~~G~~VsGSD~~~~--------~~~~~L~~~Gi~v~~g~~~~~i---~~~d 69 (96)
T d1p3da1 7 RVQQIHFIG----IGGA--GMSGIAEILLNEGYQISGSDIADG--------VVTQRLAQAGAKIYIGHAEEHI---EGAS 69 (96)
T ss_dssp TCCEEEEET----TTST--THHHHHHHHHHHTCEEEEEESCCS--------HHHHHHHHTTCEEEESCCGGGG---TTCS
T ss_pred hCCEEEEEE----ECHH--HHHHHHHHHHhCCCEEEEEeCCCC--------hhhhHHHHCCCeEEECCccccC---CCCC
Confidence 456777765 2342 256689999999999997653322 2345666789988765554443 4689
Q ss_pred EEEEcCc--chhhHHHHHhhhCCC
Q 011779 153 LIVLNTA--VAGKWLDAVLKEDVP 174 (477)
Q Consensus 153 iV~~~~~--~~~~~~~~~~~~~~~ 174 (477)
+|+..+. .....+..+...++|
T Consensus 70 ~vV~S~AI~~~npel~~A~~~gip 93 (96)
T d1p3da1 70 VVVVSSAIKDDNPELVTSKQKRIP 93 (96)
T ss_dssp EEEECTTSCTTCHHHHHHHHTTCC
T ss_pred EEEECCCcCCCCHHHHHHHHcCCC
Confidence 9988763 333445556666554
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.23 E-value=0.69 Score=37.29 Aligned_cols=77 Identities=14% Similarity=0.046 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCC-hhhHHhhhhhhhhhcCcEEEeccch-----hhHHHh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE-EDEVIYSLEHKMWDRGVQVISAKGQ-----ETINTA 148 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~~ 148 (477)
|||+++... ..-....++|.+.||+|..+....+.. .......+.......+++++..... ....+.
T Consensus 1 Mkiv~~~~~-------~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~ 73 (203)
T d2blna2 1 MKTVVFAYH-------DMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQ 73 (203)
T ss_dssp CEEEEEECH-------HHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHH
T ss_pred CeEEEEecC-------HHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhh
Confidence 667776532 245666778888999996554322211 1111123445556678887653322 244467
Q ss_pred cCCcEEEEcC
Q 011779 149 LKADLIVLNT 158 (477)
Q Consensus 149 ~~~DiV~~~~ 158 (477)
.+||++++..
T Consensus 74 ~~~Dlii~~g 83 (203)
T d2blna2 74 LSPDVIFSFY 83 (203)
T ss_dssp TCCSEEEEES
T ss_pred hcccceeeee
Confidence 8999998865
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=1.6 Score=35.01 Aligned_cols=75 Identities=21% Similarity=0.135 Sum_probs=44.2
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEeccc----------hhh
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QET 144 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~----------~~~ 144 (477)
|||+|+. ...+.....+.|.+.||+|..+...++.... ...+.......+++++.... .-.
T Consensus 1 MkI~~~G-------~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~--~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~ 71 (203)
T d2bw0a2 1 MKIAVIG-------QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVA 71 (203)
T ss_dssp CEEEEEC-------CHHHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEECHHHHH
T ss_pred CEEEEEc-------CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcC--CChhhhhHHhcCCcccccccccccccccHHHHH
Confidence 6888883 3456778888888999999844432221111 01233344556777654321 123
Q ss_pred HHHhcCCcEEEEcC
Q 011779 145 INTALKADLIVLNT 158 (477)
Q Consensus 145 ~~~~~~~DiV~~~~ 158 (477)
..+..+||++++..
T Consensus 72 ~l~~~~~Dliv~~~ 85 (203)
T d2bw0a2 72 KYQALGAELNVLPF 85 (203)
T ss_dssp HHHTTCCSEEEESS
T ss_pred HHHHhCCCceEEee
Confidence 34567999998865
|
| >d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: Sulfurtransferase DsrE species: Chromatium vinosum [TaxId: 1049]
Probab=82.69 E-value=1 Score=33.21 Aligned_cols=40 Identities=10% Similarity=-0.056 Sum_probs=29.4
Q ss_pred cEEEEEeccCCCCc-hhhHHHHHHHHHHhCCcEE-EEEecCC
Q 011779 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKV-NWITIQK 114 (477)
Q Consensus 75 ~~Il~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V-~v~~~~~ 114 (477)
||++++....+.+. .......+|+.+.+.||+| .|+...+
T Consensus 1 Mk~~i~v~~~P~~~~~a~~al~fA~aal~~gh~V~~vFf~~d 42 (130)
T d2hy5a1 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHD 42 (130)
T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred CEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 56777776554433 2377889999999999999 5886443
|
| >d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation protein DsrF {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: Intracellular sulfur oxidation protein DsrF species: Chromatium vinosum [TaxId: 1049]
Probab=82.02 E-value=0.97 Score=33.46 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=33.3
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|||++++....+.|+.. +-..+++..+...||+|.|+...++
T Consensus 1 Mkk~l~ii~~aPy~s~~a~~al~~A~aa~~~~~~v~vff~~dG 43 (132)
T d2hy5b1 1 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDG 43 (132)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGG
T ss_pred CcEEEEEecCCCCCcHHHHHHHHHHHHHHcCCCCEEEEEechH
Confidence 57888888777665443 6788999999999999999885544
|
| >d2d1pa1 c.114.1.1 (A:1-128) tRNA 2-thiouridine synthesizing protein D, TusD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: tRNA 2-thiouridine synthesizing protein D, TusD species: Escherichia coli [TaxId: 562]
Probab=81.78 E-value=1.1 Score=32.86 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCc-hhhHHHHHHHHHHhCCcEE-EEEecCCC
Q 011779 75 KLVLLVSHELSLSG-GPLLLMELAFLLRGVGTKV-NWITIQKP 115 (477)
Q Consensus 75 ~~Il~v~~~~~~gG-~~~~~~~l~~~L~~~G~~V-~v~~~~~~ 115 (477)
||++++....+.++ .......+++.+.++||+| .||...++
T Consensus 1 Mk~~i~v~~~P~~~~~a~~A~~fA~aal~~Gh~V~~vF~~~dG 43 (128)
T d2d1pa1 1 MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREG 43 (128)
T ss_dssp CEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGG
T ss_pred CEEEEEEecCCCCcHHHHHHHHHHHHHHhCCCceeEEEEechH
Confidence 56777666554433 3366789999999999999 48775443
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=81.71 E-value=5.2 Score=29.64 Aligned_cols=113 Identities=11% Similarity=0.153 Sum_probs=68.7
Q ss_pred CceEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHHh---------cCEEEEcCCCCCCcccHHHHH
Q 011779 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---------IDVLVQNSQAWGECFGRITIE 377 (477)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~~---------aDv~v~pS~~~~E~~g~~~lE 377 (477)
|.-+++||-+.. .....+++..++.|..-.|.....-++..++++. -|++++=-.- .+.-|+.+++
T Consensus 2 ppk~ILiVdD~~----~~~~~l~~~L~~~g~~~~v~~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~m-P~~~G~el~~ 76 (144)
T d1i3ca_ 2 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 76 (144)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCEEEEEECCH----HHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHhchhhhccCCCCEEEEECcc-ccccchHHHH
Confidence 445677776542 3556666777776664445444433444444432 4677654431 4556788888
Q ss_pred HHH-----cCCCEEeeccccccccCCCc---eEEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 378 AMA-----FQLPVLLQKCLYQGTAAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 378 Ama-----~G~PvI~~~~~~~~~~~gg~---~e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+- ..+|||+ .|..+.. .+..+-|.++++..|-+ .++|.+.++.+..
T Consensus 77 ~ir~~~~~~~iPvi~------lT~~~~~~~~~~a~~~Ga~~yl~KP~~--~~~L~~~i~~l~~ 131 (144)
T d1i3ca_ 77 EIKQNPDLKRIPVVV------LTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIES 131 (144)
T ss_dssp HHHHCTTTTTSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEE------EECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 774 3578883 3333332 23345578899999988 9999998877653
|
| >d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DsrEFH-like superfamily: DsrEFH-like family: DsrEF-like domain: tRNA 2-thiouridine synthesizing protein C, TusC species: Escherichia coli [TaxId: 562]
Probab=81.66 E-value=0.93 Score=32.82 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=32.6
Q ss_pred ccEEEEEeccCCCCchh-hHHHHHHHHHHhCCcEEEEEecCCC
Q 011779 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (477)
Q Consensus 74 ~~~Il~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~~ 115 (477)
|+|++++....+.|+.. +-..++|..+...|++|.|+....+
T Consensus 1 Mkkv~ii~~~~P~~~~~~~~al~~Ala~a~~~~~V~iff~~dG 43 (119)
T d2d1pb1 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEechH
Confidence 46788888776665433 6688999999999999999985544
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=81.32 E-value=8.1 Score=28.27 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=67.2
Q ss_pred eEEEEEecCCCcchHHHHHHHHHHHhcCCCCcEEEccccCCHHHHHH--hcCEEEEcCCCCCCcccHHHHHHHH-----c
Q 011779 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 381 (477)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~v~~~g~~~~l~~~~~--~aDv~v~pS~~~~E~~g~~~lEAma-----~ 381 (477)
.+++||-+.+ ...+.+....++.|. .|......++....+. ..|++++--.- .+.-|..+++.+- .
T Consensus 2 arILiVDD~~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~~~~~~~dlil~D~~~-p~~~G~~~~~~ir~~~~~~ 74 (139)
T d1w25a1 2 ARILVVDDIE----ANVRLLEAKLTAEYY--EVSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRKLKDDPTTR 74 (139)
T ss_dssp CEEEEECSST----THHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCC--EEEEEccchhhhhhhhcccceeeeeeccc-cCCCchHHHHHhhhccccc
Confidence 3566776543 466777777777765 3444433333333332 37887765441 4445666666553 3
Q ss_pred CCCEEeeccccccccCCCce---EEeecCCceeeecCCCCCHHHHHHHHHHHHh
Q 011779 382 QLPVLLQKCLYQGTAAGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 432 (477)
Q Consensus 382 G~PvI~~~~~~~~~~~gg~~---e~v~~~~~G~l~~~~d~~~~~la~~i~~ll~ 432 (477)
.+|||+ .|..+... +.++.|.++++..|-+ .++|...|..++.
T Consensus 75 ~~piI~------lt~~~~~~~~~~a~~~Ga~dyl~KP~~--~~~L~~~i~~~lr 120 (139)
T d1w25a1 75 HIPVVL------ITALDGRGDRIQGLESGASDFLTKPID--DVMLFARVRSLTR 120 (139)
T ss_dssp TSCEEE------EECSSCHHHHHHHHHHTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCEEE------EEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 578883 34444433 3355688999999998 9999999988764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=81.29 E-value=3.3 Score=35.87 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=41.9
Q ss_pred cEEEEEeccCCCCchhhHHHHHHHHHHhCCcEEEEEecCCCCChhhHHhhhhhhhhhcCcEEEecc-----chhhHHHhc
Q 011779 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQETINTAL 149 (477)
Q Consensus 75 ~~Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~-----~~~~~~~~~ 149 (477)
||||+. ||....=..|++.|.++||+|+++.......... ..........++.++... ......+..
T Consensus 1 MKiLIt------G~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 72 (338)
T d1udca_ 1 MRVLVT------GGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSV--LPVIERLGGKHPTFVEGDIRNEALMTEILHDH 72 (338)
T ss_dssp CEEEEE------TTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTH--HHHHHHHHTSCCEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEE------CCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhh--HHHHHhhcCCCCEEEEeecCCHHHHHHHHhcc
Confidence 566654 3555677899999999999999985322111111 011222334466665433 223444566
Q ss_pred CCcEEE
Q 011779 150 KADLIV 155 (477)
Q Consensus 150 ~~DiV~ 155 (477)
+||+|+
T Consensus 73 ~~d~Vi 78 (338)
T d1udca_ 73 AIDTVI 78 (338)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 899874
|