Citrus Sinensis ID: 011842
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| P54772 | 413 | Histidine decarboxylase O | N/A | no | 0.821 | 0.946 | 0.583 | 1e-140 | |
| A7MVI6 | 386 | Histidine decarboxylase O | yes | no | 0.739 | 0.911 | 0.409 | 7e-77 | |
| Q56581 | 386 | Histidine decarboxylase O | yes | no | 0.735 | 0.906 | 0.409 | 1e-76 | |
| Q1IAK7 | 403 | Histidine decarboxylase O | yes | no | 0.752 | 0.888 | 0.392 | 1e-75 | |
| P05034 | 378 | Histidine decarboxylase O | N/A | no | 0.712 | 0.896 | 0.406 | 1e-74 | |
| P28578 | 378 | Histidine decarboxylase O | N/A | no | 0.728 | 0.917 | 0.383 | 3e-74 | |
| P95477 | 405 | Histidine decarboxylase O | yes | no | 0.693 | 0.814 | 0.412 | 4e-74 | |
| B2HVG6 | 383 | Histidine decarboxylase O | yes | no | 0.724 | 0.900 | 0.397 | 9e-74 | |
| A3M7A4 | 383 | Histidine decarboxylase O | yes | no | 0.722 | 0.898 | 0.398 | 2e-73 | |
| B0VBU8 | 383 | Histidine decarboxylase O | yes | no | 0.724 | 0.900 | 0.394 | 9e-73 |
| >sp|P54772|DCHS_SOLLC Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 231/396 (58%), Positives = 303/396 (76%), Gaps = 5/396 (1%)
Query: 84 VLARYRKTLMERTKHHLGYPYNLDFDYGA-LAQLQHFSINNLGDPFIESNYGVHSRQFEV 142
+L +Y +TL ER K+H+GYP N+ +++ A LA L F +NN GDPF + HS+ FEV
Sbjct: 17 ILTQYLETLSERKKYHIGYPINMCYEHHATLAPLLQFHLNNCGDPFTQHPTDFHSKDFEV 76
Query: 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAA 201
VLDWFA+LWE+E +EYWGYIT+ GTEGNLHG +GR E+ P+G LYAS++SHYS+FKAA
Sbjct: 77 AVLDWFAQLWEIEKDEYWGYITSGGTEGNLHGFWLGRRELLPNGYLYASKDSHYSIFKAA 136
Query: 202 RMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE 261
RMYRME ++ L++GEID D ++KLL NK+KPAIIN+NIGTT KGA+DDLD VIQTLE
Sbjct: 137 RMYRMELQTINTLVNGEIDYEDLQSKLLVNKNKPAIININIGTTFKGAIDDLDFVIQTLE 196
Query: 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITR 321
G++ D +YIHCD AL GL++PF+K A K++FKKPIGS+S+SGHKF+GCPM CGVQITR
Sbjct: 197 NCGYSNDNYYIHCDRALCGLILPFIKHAKKITFKKPIGSISISGHKFLGCPMSCGVQITR 256
Query: 322 MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLK 381
+++ LS +EY+ S DATI GSRNG PIFLWY L++KG+ Q++ C+ NA YLK
Sbjct: 257 RSYVSTLSK-IEYINSADATISGSRNGFTPIFLWYCLSKKGHARLQQDSITCIENARYLK 315
Query: 382 DRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLN 441
DRLL+AGIS MLN+ S TVVFERP D +F+RRW L C +AHVV+MP +T + +D F
Sbjct: 316 DRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRETIDSFFK 375
Query: 442 ELIENRS-TWYEDGKRQPPCIAADIGSENCVCAAHK 476
+L++ R+ WY+D K PPC+A D+ + NC+C+ K
Sbjct: 376 DLMQERNYKWYQDVKALPPCLADDL-ALNCMCSNKK 410
|
Solanum lycopersicum (taxid: 4081) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|A7MVI6|DCHS_VIBHB Histidine decarboxylase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 219/354 (61%), Gaps = 2/354 (0%)
Query: 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
++GYP + DFDY L + FSINN GD ESNY ++S FE V+ +F++L+ + + E
Sbjct: 25 NVGYPESADFDYSELEKFMKFSINNCGDWREESNYKLNSFDFEKDVMRYFSQLFNIPHQE 84
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGYI+N GTEGNL + RE+FP LY S E+HYSV K AR+ + K+ L +GE
Sbjct: 85 SWGYISNGGTEGNLFSCYLARELFPTAYLYYSEETHYSVDKIARLLNIPSRKIPALSNGE 144
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
ID ++ +++ II NIG+T++GA+DD+ + L G + +YIH D AL
Sbjct: 145 IDYQQLVTQIERDQQGNPIIFANIGSTMRGAIDDIGRIQNDLATLGLDRKDYYIHADAAL 204
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV + P SF+ I S++VSGHK +G P+PCG+ + + ++ +S V+Y++SR
Sbjct: 205 SGMILPFVDQPPPYSFQDGIDSITVSGHKMIGSPIPCGIVLAKQHMVDQISVEVDYISSR 264
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH+ +F+W + +Q +V+ CL A Y RL AGI A N+ S+
Sbjct: 265 DQTISGSRNGHSALFMWTAIKSHSLSDWQSKVKLCLDMADYTVQRLQKAGIEAWRNKNSN 324
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVVMPNV-TIDKLDDFLNELIENRSTWY 451
TVVF P E R+ LA G++AH+V MP++ + +LD ++++I + S Y
Sbjct: 325 TVVFPCPS-EPIWRKHSLATSGDVAHIVTMPHLNSTAQLDALIDDVIFDLSPEY 377
|
Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q56581|DCHS_VIBA7 Histidine decarboxylase OS=Vibrio anguillarum (strain ATCC 68554 / 775) GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/352 (40%), Positives = 220/352 (62%), Gaps = 2/352 (0%)
Query: 94 ERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 153
E ++GYP + FDY L + FSINN GD ESNY ++S +FE V+ +F++L++
Sbjct: 20 ENQYFNVGYPESAAFDYSILEKFMKFSINNCGDWREESNYKLNSFEFEKEVMRFFSQLFK 79
Query: 154 LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213
+ N+ WGYI+N GTEGN+ + RE+FP +Y S E+HYSV K R+ + K+
Sbjct: 80 IPYNDSWGYISNGGTEGNMFSCYLAREIFPTAYIYYSEETHYSVDKIVRLLNIPARKIRS 139
Query: 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIH 273
L SGEID + ++ ++K K II NIGTT++GA D++ + Q L G ++ +YIH
Sbjct: 140 LPSGEIDYQNLVDQIQKDKQKNPIIFANIGTTMRGATDNIQRIQQDLASIGLERNDYYIH 199
Query: 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE 333
D AL G++MPFV++ SF+ I S+SVSGHK +G P+PCG+ + + ++ +S V+
Sbjct: 200 ADAALSGMIMPFVEQPHPYSFEDGIDSISVSGHKMIGSPIPCGIVLAKRHMVDQISVEVD 259
Query: 334 YLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML 393
Y++SRD TI GSRNGH+ +F+W + + +Q +V +CL A Y R + GI+A
Sbjct: 260 YISSRDQTISGSRNGHSALFMWTAIKSHSFVDWQGKVNQCLNMAEYTVQRFQEVGINAWR 319
Query: 394 NELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVT-IDKLDDFLNELI 444
N+ S+TVVF P E R+ LA G++AH++ MP++ DKLD + ++I
Sbjct: 320 NKNSNTVVFPCPS-EPVWRKHSLANSGSVAHIITMPHLDGPDKLDPLIEDVI 370
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Vibrio anguillarum (strain ATCC 68554 / 775) (taxid: 882102) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q1IAK7|DCHS_PSEE4 Histidine decarboxylase OS=Pseudomonas entomophila (strain L48) GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 223/362 (61%), Gaps = 4/362 (1%)
Query: 85 LARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGV 144
L ++ + ++ ++GYP N DF+Y L + FSINN GD NY ++S FE V
Sbjct: 11 LDQFWEHCLKNQYFNIGYPENADFNYAQLHRFLRFSINNCGDWAEPGNYLLNSFDFEKDV 70
Query: 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY 204
+ +FA L+ + E WGY+TN GTEGN+ G + RE+FP G LY S+++HYSV K ++
Sbjct: 71 MAYFAELFSIPLEESWGYVTNGGTEGNMFGCYLARELFPTGTLYYSKDTHYSVAKIVKLL 130
Query: 205 RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG 264
R++C V+ L +GEID D AK+ ++++ II VN+GTT++GA+D++ + Q LEE G
Sbjct: 131 RIDCRAVESLPNGEIDYDDLMAKIAADQEQHPIIFVNVGTTMRGAIDNIATIQQRLEEVG 190
Query: 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH 324
++ +Y+H D AL G+++PFV +F + S+ VSGHK +G P+PCG+ + + E+
Sbjct: 191 IPREDYYLHADAALSGMILPFVDNPQPFNFADGVDSICVSGHKMIGSPIPCGIVVAKREN 250
Query: 325 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ +S +V+Y+ + D TI GSRNGH P+ +W L +++ V+ L +A Y DRL
Sbjct: 251 VERISVDVDYIRANDKTISGSRNGHTPMMMWAALRSHSPAQWRRRVRHSLNSAQYAVDRL 310
Query: 385 LDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDK--LDDFLNE 442
AGI A ++ S TVVF P R++ LA G+ AH++ P+ DK +D ++E
Sbjct: 311 QAAGIDAWRHDNSITVVFPCPS-SRIARKYCLATSGDTAHLITTPHHQ-DKSMIDALIDE 368
Query: 443 LI 444
+I
Sbjct: 369 VI 370
|
Pseudomonas entomophila (strain L48) (taxid: 384676) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P05034|DCHS_MORMO Histidine decarboxylase OS=Morganella morganii GN=hdc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 215/344 (62%), Gaps = 5/344 (1%)
Query: 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
++GYP + DFDY L + FSINN GD NY ++S FE V+++FA L+++ +
Sbjct: 25 NIGYPESADFDYTNLERFLRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFADLFKIPFEQ 84
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGY+TN GTEGN+ G +GRE+FPDG LY S+++HYSV K ++ R++ V+ +GE
Sbjct: 85 SWGYVTNGGTEGNMFGCYLGREIFPDGTLYYSKDTHYSVAKIVKLLRIKSQVVESQPNGE 144
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
ID D K+ +K+ II NIGTTV+GA+DD+ + + L+ +G ++ +Y+H D AL
Sbjct: 145 IDYDDLMKKIADDKEAHPIIFANIGTTVRGAIDDIAEIQKRLKAAGIKREDYYLHADAAL 204
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV A +F I S+ VSGHK +G P+PCG+ + + E+++ +S ++Y+++
Sbjct: 205 SGMILPFVDDAQPFTFADGIDSIGVSGHKMIGSPIPCGIVVAKKENVDRISVEIDYISAH 264
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH P+ LW + + +++ + + L A Y DR+ AGI+A N+ S
Sbjct: 265 DKTITGSRNGHTPLMLWEAIRSHSTEEWKRRITRSLDMAQYAVDRMQKAGINAWRNKNSI 324
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVV----MPNVTIDKLDD 438
TVVF P E R LA G++AH++ + V IDKL D
Sbjct: 325 TVVFPCPS-ERVWREHCLATSGDVAHLITTAHHLDTVQIDKLID 367
|
Morganella morganii (taxid: 582) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P28578|DCHS_RAOPL Histidine decarboxylase OS=Raoultella planticola GN=hdc PE=3 SV=4 | Back alignment and function description |
|---|
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 222/349 (63%), Gaps = 2/349 (0%)
Query: 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
++GYP + DFDY L + FSINN GD NY ++S FE V+++FA+L+++ E
Sbjct: 25 NIGYPESADFDYTILERFMRFSINNCGDWGEYCNYLLNSFDFEKEVMEYFAQLFKIPFEE 84
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGY+TN GTEGN+ G +GRE+FP+G LY S+++HYSV K ++ R++ V+ +GE
Sbjct: 85 SWGYVTNGGTEGNMFGCYLGREIFPNGTLYYSKDTHYSVAKIVKLLRIKSTLVESQPNGE 144
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
+D AD K+ ++ +K II NIGTTV+GA+D++ ++ Q++ E G + +Y+H D AL
Sbjct: 145 MDYADLIKKIKRDNEKHPIIFANIGTTVRGAIDNIAIIQQSISELGIERKDYYLHADAAL 204
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV +F I S+ VSGHK +G P+PCG+ + + ++++ +S ++Y+++
Sbjct: 205 SGMILPFVDNPQPFNFADGIDSIGVSGHKMIGSPIPCGIVVAKKKNVDRISVEIDYISAH 264
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH P+ +W + ++ +++ +++ L A Y DR AGI A N+ S
Sbjct: 265 DKTISGSRNGHTPLMMWEAIRSHSWEEWRRRIERSLNMAQYAVDRFQSAGIDAWRNKNSI 324
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELIEN 446
TVVF P E ++ LA G+IAH++ ++ K+D ++++I +
Sbjct: 325 TVVFPCPS-EAVWKKHCLATSGDIAHLIATAHHLDSSKIDALIDDVIAD 372
|
Raoultella planticola (taxid: 575) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P95477|DCHS_PSEFL Histidine decarboxylase OS=Pseudomonas fluorescens GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/332 (41%), Positives = 205/332 (61%), Gaps = 2/332 (0%)
Query: 100 LGYPYNLDFDYGALAQLQHFSINNL-GDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
+GYP + DFDY L + FSINNL G SNY ++S FE V+ +FA L+ + +
Sbjct: 26 IGYPESADFDYSQLHRFLQFSINNLLGTGNEYSNYLLNSFDFEKDVMTYFAELFNIALED 85
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGY+TN GTEGN+ G +GRE+FPDG LY S+++HYSV K ++ R++C V+ L +GE
Sbjct: 86 SWGYVTNGGTEGNMFGCYLGRELFPDGTLYYSKDTHYSVAKIVKLLRIKCRAVESLPNGE 145
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
ID D AK+ ++++ II NIGTT++GA+D++ + Q L+++G + +Y+H D AL
Sbjct: 146 IDYDDLMAKITADQERHPIIFANIGTTMRGALDNIVTIQQRLQQAGIARHDYYLHADAAL 205
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV SF I S+ VSGHK +G P+PCG+ + + ++ +S V+Y+ +
Sbjct: 206 SGMILPFVDHPQPFSFADGIDSICVSGHKMIGSPIPCGIVVAKRNNVARISVEVDYIRAH 265
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH P+ +W L + ++ ++ L A Y DR +GI A NE S
Sbjct: 266 DKTISGSRNGHTPLMMWAALRSYSWAEWRHRIKHSLDTAQYAVDRFQASGIDAWRNENSI 325
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVVMPN 430
TVVF P E ++ LA GN AH++ P+
Sbjct: 326 TVVFPCPS-ERIATKYCLATSGNSAHLITTPH 356
|
Pseudomonas fluorescens (taxid: 294) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B2HVG6|DCHS_ACIBC Histidine decarboxylase OS=Acinetobacter baumannii (strain ACICU) GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 214/347 (61%), Gaps = 2/347 (0%)
Query: 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
++GYP + DFDY AL + FSINN GD SNY ++S FE V+ +FA ++++ E
Sbjct: 25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEE 84
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGY+TN GTEGN+ G + RE+FPD LY S+++HYSV K A++ +M+ ++ L +GE
Sbjct: 85 SWGYVTNGGTEGNMFGCYLARELFPDSTLYYSKDTHYSVRKIAKLLQMKSCVIESLDNGE 144
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
ID D K+ NK+ II NIGTT+ GA+DD++++ + L + G + +YIH D AL
Sbjct: 145 IDYDDLIHKIKTNKESHPIIFANIGTTMTGAIDDIEMIQERLAQIGIMRRDYYIHADAAL 204
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV SF I S+ VSGHK +G P+PCG+ + + +++ +S +V+Y+++R
Sbjct: 205 SGMILPFVDHPQAFSFAHGIDSICVSGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTR 264
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S
Sbjct: 265 DQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSI 324
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 444
TVVF P E ++ LA GN+AH++ + ++D ++++I
Sbjct: 325 TVVFPCPS-EHIWKKHYLATSGNMAHLITTAHHRDTRQIDSLIDDVI 370
|
Acinetobacter baumannii (strain ACICU) (taxid: 405416) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3M7A4|DCHS_ACIBT Histidine decarboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=hdc PE=3 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 212/346 (61%), Gaps = 2/346 (0%)
Query: 100 LGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEY 159
+GYP + DFDY AL + FSINN GD SNY ++S FE V+ +FA ++++ E
Sbjct: 26 IGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEES 85
Query: 160 WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEI 219
WGY+TN GTEGN+ G + RE+FPD LY S+++HYSV K A++ +M+ ++ L +GEI
Sbjct: 86 WGYVTNGGTEGNMFGCYLARELFPDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGEI 145
Query: 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALF 279
D D K+ NK+ II NIGTT+ GA+DD++++ + L + G + +YIH D AL
Sbjct: 146 DYDDLIHKIKTNKESHPIIFANIGTTMTGAIDDIEMIQERLAQIGIMRRDYYIHADAALS 205
Query: 280 GLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD 339
G+++PFV SF I S+ VSGHK +G P+PCG+ + + +++ +S +V+Y+++RD
Sbjct: 206 GMILPFVDHPQAFSFAHGIDSICVSGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTRD 265
Query: 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSST 399
TI GSRNGH + +W + + + +Q CL+ A Y DR GI A N S T
Sbjct: 266 QTISGSRNGHTVLLMWAAIRSQTNLQRRHRIQHCLKMAQYAVDRFQAVGIPAWRNPNSIT 325
Query: 400 VVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 444
VVF P E ++ LA GN+AH++ + ++D ++++I
Sbjct: 326 VVFPCPS-EHIWKKHYLATSGNMAHLITTAHHRDTRQIDSLIDDVI 370
|
Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) (taxid: 400667) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|B0VBU8|DCHS_ACIBY Histidine decarboxylase OS=Acinetobacter baumannii (strain AYE) GN=hdc PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 213/347 (61%), Gaps = 2/347 (0%)
Query: 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNE 158
++GYP + DFDY AL + FSINN GD SNY ++S FE V+ +FA ++++ E
Sbjct: 25 NIGYPESADFDYSALFRFFKFSINNCGDWKDYSNYALNSFDFEKDVMAYFAEIFQIPFEE 84
Query: 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218
WGY+TN GTEGN+ G + RE+F D LY S+++HYSV K A++ +M+ ++ L +GE
Sbjct: 85 SWGYVTNGGTEGNMFGCYLARELFSDSTLYYSKDTHYSVGKIAKLLQMKSCVIESLDNGE 144
Query: 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL 278
ID D K+ NK+ II NIGTT+ GA+DD++++ + L + G + +YIH D AL
Sbjct: 145 IDYDDLIHKIKTNKESHPIIFANIGTTMTGAIDDIEMIQERLAQIGIMRRDYYIHADAAL 204
Query: 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338
G+++PFV SF I S+ VSGHK +G P+PCG+ + + +++ +S +V+Y+++R
Sbjct: 205 SGMILPFVDHPQAFSFAHGIDSICVSGHKMIGSPIPCGIVVAKRQNVERISVDVDYISTR 264
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398
D TI GSRNGH + +W + + ++ +Q CL+ A Y DR GI A N S
Sbjct: 265 DQTISGSRNGHTVLLMWAAIRSQTNLQRRQRIQHCLKMAQYAVDRFQAVGIPAWRNPNSI 324
Query: 399 TVVFERPQDEEFVRRWQLACQGNIAHVVVMP-NVTIDKLDDFLNELI 444
TVVF P E ++ LA GN+AH++ + ++D ++++I
Sbjct: 325 TVVFPCPS-EHIWKKHYLATSGNMAHLITTAHHRDTRQIDSLIDDVI 370
|
Acinetobacter baumannii (strain AYE) (taxid: 509173) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| 224082428 | 478 | predicted protein [Populus trichocarpa] | 0.949 | 0.945 | 0.888 | 0.0 | |
| 255584582 | 471 | group II plp decarboxylase, putative [Ri | 0.974 | 0.985 | 0.845 | 0.0 | |
| 224066727 | 463 | predicted protein [Populus trichocarpa] | 0.922 | 0.948 | 0.891 | 0.0 | |
| 71000475 | 487 | putative serine decarboxylase [Beta vulg | 0.957 | 0.936 | 0.833 | 0.0 | |
| 449446423 | 486 | PREDICTED: histidine decarboxylase-like | 0.987 | 0.967 | 0.801 | 0.0 | |
| 225463912 | 482 | PREDICTED: histidine decarboxylase-like | 0.997 | 0.985 | 0.845 | 0.0 | |
| 449446425 | 481 | PREDICTED: histidine decarboxylase-like | 0.987 | 0.977 | 0.801 | 0.0 | |
| 297735834 | 438 | unnamed protein product [Vitis vinifera] | 0.894 | 0.972 | 0.899 | 0.0 | |
| 147815605 | 473 | hypothetical protein VITISV_034634 [Viti | 0.978 | 0.985 | 0.854 | 0.0 | |
| 357445703 | 486 | Histidine decarboxylase [Medicago trunca | 0.983 | 0.962 | 0.801 | 0.0 |
| >gi|224082428|ref|XP_002306690.1| predicted protein [Populus trichocarpa] gi|222856139|gb|EEE93686.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/458 (88%), Positives = 425/458 (92%), Gaps = 6/458 (1%)
Query: 21 FDPTAVVA-EPVPPVVT-ENGHELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKE 78
FD +AVV EP+PP+V ENG K +EIVLGKNVH +C VTEPEA+DEFTGDKE
Sbjct: 20 FDISAVVQPEPLPPIVAAENGD----KQNGREIVLGKNVHTTCLEVTEPEANDEFTGDKE 75
Query: 79 AYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSR 138
AYMA VLARYRK LMERTK+HLGYPYNLDFDYGAL QLQHFSINNLGDPFIESNYGVHSR
Sbjct: 76 AYMASVLARYRKNLMERTKYHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSR 135
Query: 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF 198
QFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILVGREVFPDG+LYASRESHYSVF
Sbjct: 136 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGVLYASRESHYSVF 195
Query: 199 KAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQ 258
KAARMYRM+C KVDCLISGEIDCADFKAKLL NKDKPAIINVNIGTTVKGAVDDLDLVIQ
Sbjct: 196 KAARMYRMDCEKVDCLISGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQ 255
Query: 259 TLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQ 318
TLEESGF+QDRFYIHCDGALFGLMMPFVK+APKV+FKKPIGSVSVSGHKFVGCPMPCGVQ
Sbjct: 256 TLEESGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQ 315
Query: 319 ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAH 378
ITRMEHI+VLS NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAH
Sbjct: 316 ITRMEHIDVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAH 375
Query: 379 YLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDD 438
YLKDRL DAGISAMLNELSSTVVFERP DEEFVRRWQLACQGNIAHVVVMP+VTI+KLDD
Sbjct: 376 YLKDRLHDAGISAMLNELSSTVVFERPLDEEFVRRWQLACQGNIAHVVVMPSVTIEKLDD 435
Query: 439 FLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
FLNEL+E RS WY DG QPPCIAAD+G ENC CA HK
Sbjct: 436 FLNELVEKRSIWYRDGGVQPPCIAADVGCENCACALHK 473
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584582|ref|XP_002533017.1| group II plp decarboxylase, putative [Ricinus communis] gi|223527206|gb|EEF29371.1| group II plp decarboxylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/478 (84%), Positives = 431/478 (90%), Gaps = 14/478 (2%)
Query: 2 AEAMMKQVNGGLAEKF---GPVFDPTAVVA-EPVPPVVTENGHELKHKTAEKEIVLGKNV 57
A+A+ VNG E+ D TA+VA EP+P VV EN E+EIVLGKNV
Sbjct: 3 AQAVPVHVNGKKTEEILREDIDLDLTAIVAAEPLPEVV-EN---------EREIVLGKNV 52
Query: 58 HASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQ 117
H SC VTEP+ADDE TGDK+AYMA VLARYRKTL+ERTK+HLGYPYNLDFDYGAL QLQ
Sbjct: 53 HTSCLEVTEPDADDELTGDKDAYMASVLARYRKTLIERTKYHLGYPYNLDFDYGALGQLQ 112
Query: 118 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILV 177
HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILV
Sbjct: 113 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIERNEYWGYITNCGTEGNLHGILV 172
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAI 237
GREVFPDG+LYASRESHYSVFKAARMYRME VK+DCL+SGEIDCADFK KLL NKDKPAI
Sbjct: 173 GREVFPDGVLYASRESHYSVFKAARMYRMESVKIDCLVSGEIDCADFKVKLLANKDKPAI 232
Query: 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
INVNIGTTVKGAVDDLDLVIQTLEE GFTQ+RFYIHCDGALFGLMMPFVK+APKVSFKKP
Sbjct: 233 INVNIGTTVKGAVDDLDLVIQTLEECGFTQNRFYIHCDGALFGLMMPFVKRAPKVSFKKP 292
Query: 298 IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357
IGSVSVSGHKFVGCPMPCGVQITRMEHINVLS NVEYLASRDATIMGSRNGHAPIFLWYT
Sbjct: 293 IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSKNVEYLASRDATIMGSRNGHAPIFLWYT 352
Query: 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLA 417
LNRKGYKGFQK+VQKCLRNAHYLK RL DAGISAMLNELSSTVV ERP+DEEFVRRWQLA
Sbjct: 353 LNRKGYKGFQKDVQKCLRNAHYLKGRLRDAGISAMLNELSSTVVLERPKDEEFVRRWQLA 412
Query: 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAH 475
CQGNIAHVVVMP+VTI+KLD+FL+EL++ RSTWY+DG+ Q PCIAAD+GSENC CA H
Sbjct: 413 CQGNIAHVVVMPSVTIEKLDNFLDELVKKRSTWYQDGQVQSPCIAADVGSENCACALH 470
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224066727|ref|XP_002302186.1| predicted protein [Populus trichocarpa] gi|222843912|gb|EEE81459.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/443 (89%), Positives = 414/443 (93%), Gaps = 4/443 (0%)
Query: 34 VVTENGHELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLM 93
V ENG K +EIVLG+NVH +C VTEPEA+DE TGDKEAYMA VLARYRK LM
Sbjct: 25 VEAENGD----KQNGREIVLGRNVHTTCLEVTEPEANDESTGDKEAYMASVLARYRKNLM 80
Query: 94 ERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 153
ERTKHHLGYPYNLDFDYGAL QLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE
Sbjct: 81 ERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 140
Query: 154 LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213
+E +EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM CVKVDC
Sbjct: 141 IEKSEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMGCVKVDC 200
Query: 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIH 273
L+SGEIDCADFK KLL NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGF+QDRFYIH
Sbjct: 201 LVSGEIDCADFKVKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFSQDRFYIH 260
Query: 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE 333
CDGALFGLMMPFVK+APKV+FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE
Sbjct: 261 CDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE 320
Query: 334 YLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML 393
YLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNA+YLKDRL DAGISAML
Sbjct: 321 YLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAYYLKDRLRDAGISAML 380
Query: 394 NELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453
NELSSTVVFERP DE+FVRRWQLACQGNIAHVVVMP+VTI+KLDDF+NEL+E RSTWY+D
Sbjct: 381 NELSSTVVFERPIDEDFVRRWQLACQGNIAHVVVMPSVTIEKLDDFVNELVEKRSTWYQD 440
Query: 454 GKRQPPCIAADIGSENCVCAAHK 476
K +PPCIAADIGS+NC C HK
Sbjct: 441 EKVRPPCIAADIGSQNCSCDLHK 463
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|71000475|dbj|BAE07183.1| putative serine decarboxylase [Beta vulgaris] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/462 (83%), Positives = 424/462 (91%), Gaps = 6/462 (1%)
Query: 21 FDPTAVVAEPVPPVV---TENGHELKHKT---AEKEIVLGKNVHASCFSVTEPEADDEFT 74
DPTAVV EP+PPV E G K KT E+EIVLG+N+H+SC +TEPE +DE T
Sbjct: 26 LDPTAVVLEPLPPVANGDVEVGVMKKMKTTENGEREIVLGRNIHSSCLDITEPEDNDELT 85
Query: 75 GDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYG 134
GDKEAYMA VLARYR++L+ERTK+HLGYPYNLDFDYGAL QLQHFSINNLGDPFIESNYG
Sbjct: 86 GDKEAYMASVLARYRQSLLERTKYHLGYPYNLDFDYGALNQLQHFSINNLGDPFIESNYG 145
Query: 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH 194
VHSRQFEVGVLDWFARLWE+E +EYWGYITNCGTEGNLHGILVGREVFPDGILYAS+ESH
Sbjct: 146 VHSRQFEVGVLDWFARLWEIEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASKESH 205
Query: 195 YSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLD 254
YS+FKAARMYRM+C+K++ L+SGE+DCADFKAKLL+NKDKPAI+NVNIGTTVKGAVDDLD
Sbjct: 206 YSLFKAARMYRMDCIKIETLLSGEVDCADFKAKLLKNKDKPAIVNVNIGTTVKGAVDDLD 265
Query: 255 LVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMP 314
LVIQTLEE GF +RFYIHCDGALFGLM+PFVKKAP+V+FKKPIGSVSVSGHKFVGCPMP
Sbjct: 266 LVIQTLEECGFPHNRFYIHCDGALFGLMLPFVKKAPQVTFKKPIGSVSVSGHKFVGCPMP 325
Query: 315 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374
CGVQITRMEHIN LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY+GFQKEVQKCL
Sbjct: 326 CGVQITRMEHINTLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCL 385
Query: 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTID 434
RNAHYLKDRL + GISAMLNELSSTVVFERP DEEF+RRWQLACQGNIAHVVVMPN+TID
Sbjct: 386 RNAHYLKDRLREVGISAMLNELSSTVVFERPLDEEFIRRWQLACQGNIAHVVVMPNITID 445
Query: 435 KLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
KL+ FL+EL+E RSTW++DG +PPC+A+DIG ENCVC HK
Sbjct: 446 KLESFLDELVEKRSTWFKDGTNKPPCVASDIGQENCVCPMHK 487
|
Source: Beta vulgaris Species: Beta vulgaris Genus: Beta Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446423|ref|XP_004140971.1| PREDICTED: histidine decarboxylase-like isoform 1 [Cucumis sativus] gi|449526882|ref|XP_004170442.1| PREDICTED: histidine decarboxylase-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/479 (80%), Positives = 429/479 (89%), Gaps = 9/479 (1%)
Query: 6 MKQVNGGLAEKFGPVFDPTAVVAEPVPPV-VTENGHEL-------KHKTAEKEIVLGKNV 57
M + NGG AE FD V ++P+PP+ V+ NG +L ++ ++EIVLG+NV
Sbjct: 8 MGENNGG-AEVLIGKFDTNLVFSDPLPPLAVSNNGLDLNGQQHVDSNQKGKREIVLGRNV 66
Query: 58 HASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQ 117
H +C S+TEP+A+DE TGDKEAYMA VLARYRK L+ERTK+HLGYPYNLDFDYGAL+QLQ
Sbjct: 67 HTTCLSITEPDANDESTGDKEAYMASVLARYRKNLLERTKYHLGYPYNLDFDYGALSQLQ 126
Query: 118 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILV 177
HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILV
Sbjct: 127 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILV 186
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAI 237
GREV PDGILYASRE+HYSVFKAARMYRM+CVKV LISGEIDCAD + KLL NKDKPAI
Sbjct: 187 GREVLPDGILYASRETHYSVFKAARMYRMDCVKVGTLISGEIDCADLRVKLLANKDKPAI 246
Query: 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
+NVNIGTTVKGAVDDLDLVIQTL E GF++DRFYIHCDGALFGLMMPFVK+APKVSFKKP
Sbjct: 247 LNVNIGTTVKGAVDDLDLVIQTLNECGFSKDRFYIHCDGALFGLMMPFVKRAPKVSFKKP 306
Query: 298 IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357
IGSVSVSGHKFVGCPMPCGVQ+TR+EHIN LSSNVEYLASRDATIMGSRNGHAPIFLWYT
Sbjct: 307 IGSVSVSGHKFVGCPMPCGVQLTRLEHINALSSNVEYLASRDATIMGSRNGHAPIFLWYT 366
Query: 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLA 417
LNRKGYKGFQKEVQKCLRNAHYLKDRLLD GISAMLNELSSTVVFERP+DEEF+RRWQLA
Sbjct: 367 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDVGISAMLNELSSTVVFERPRDEEFIRRWQLA 426
Query: 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
C+GNIAHVVVMP+V+ +KLDDFL++L+E RSTWY+ QPPC+AA++G+E+C C H+
Sbjct: 427 CEGNIAHVVVMPSVSQEKLDDFLSDLVEKRSTWYDGENVQPPCVAAELGNESCACKLHR 485
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463912|ref|XP_002266398.1| PREDICTED: histidine decarboxylase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/478 (84%), Positives = 431/478 (90%), Gaps = 3/478 (0%)
Query: 1 MAEAMMKQVNGGLAEKFGPVFDPTAVVAEPVPPVVTENGHELKHKTAEKE--IVLGKNVH 58
+ EAM + GG E FDPTAVV EPVPPVV G + + ++ IVLG+NVH
Sbjct: 6 LFEAMSGDL-GGKVEILSEDFDPTAVVVEPVPPVVENGGEMGREEEEKRSKEIVLGRNVH 64
Query: 59 ASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQH 118
+C +VTEP+A+DEFTGDKEAYMA VLARYRKTLMERTKHHLGYPYNLDFDYGAL+QLQH
Sbjct: 65 TTCLAVTEPDANDEFTGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDYGALSQLQH 124
Query: 119 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG 178
FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE+E +EYWGYITNCGTEGNLHGILVG
Sbjct: 125 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYITNCGTEGNLHGILVG 184
Query: 179 REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAII 238
REV PDGILYAS+E+HYSVFKAARMYRMECVKV +SGEIDCADFKAKLL NKDKPAII
Sbjct: 185 REVLPDGILYASQETHYSVFKAARMYRMECVKVATSLSGEIDCADFKAKLLANKDKPAII 244
Query: 239 NVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298
NVNIGTTVKGAVDDLDLVI+TLEE GFT DRFYIHCDGALFGLMMPFVK+APKV+FKKPI
Sbjct: 245 NVNIGTTVKGAVDDLDLVIETLEECGFTHDRFYIHCDGALFGLMMPFVKRAPKVTFKKPI 304
Query: 299 GSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358
GSVSVSGHKFVGCPMPCGVQITRMEHIN LS NVEYLASRDATIMGSRNGHAPIFLWYTL
Sbjct: 305 GSVSVSGHKFVGCPMPCGVQITRMEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTL 364
Query: 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLAC 418
NRKGYKGFQKEVQKCLRNAHYLKDRL DAGISAMLNELSSTVVFERP D+EFVRRWQLAC
Sbjct: 365 NRKGYKGFQKEVQKCLRNAHYLKDRLRDAGISAMLNELSSTVVFERPVDDEFVRRWQLAC 424
Query: 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
QGNIAHVVVMPNVTI+KLD FL+ELIE R+TW+ D K QPPC+AADIGSENC+C HK
Sbjct: 425 QGNIAHVVVMPNVTIEKLDYFLDELIEKRNTWFLDKKVQPPCVAADIGSENCLCDLHK 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446425|ref|XP_004140972.1| PREDICTED: histidine decarboxylase-like isoform 2 [Cucumis sativus] gi|449526884|ref|XP_004170443.1| PREDICTED: histidine decarboxylase-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/479 (80%), Positives = 429/479 (89%), Gaps = 9/479 (1%)
Query: 6 MKQVNGGLAEKFGPVFDPTAVVAEPVPPV-VTENGHEL-------KHKTAEKEIVLGKNV 57
M + NGG AE FD V ++P+PP+ V+ NG +L ++ ++EIVLG+NV
Sbjct: 3 MGENNGG-AEVLIGKFDTNLVFSDPLPPLAVSNNGLDLNGQQHVDSNQKGKREIVLGRNV 61
Query: 58 HASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQ 117
H +C S+TEP+A+DE TGDKEAYMA VLARYRK L+ERTK+HLGYPYNLDFDYGAL+QLQ
Sbjct: 62 HTTCLSITEPDANDESTGDKEAYMASVLARYRKNLLERTKYHLGYPYNLDFDYGALSQLQ 121
Query: 118 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILV 177
HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILV
Sbjct: 122 HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILV 181
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAI 237
GREV PDGILYASRE+HYSVFKAARMYRM+CVKV LISGEIDCAD + KLL NKDKPAI
Sbjct: 182 GREVLPDGILYASRETHYSVFKAARMYRMDCVKVGTLISGEIDCADLRVKLLANKDKPAI 241
Query: 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
+NVNIGTTVKGAVDDLDLVIQTL E GF++DRFYIHCDGALFGLMMPFVK+APKVSFKKP
Sbjct: 242 LNVNIGTTVKGAVDDLDLVIQTLNECGFSKDRFYIHCDGALFGLMMPFVKRAPKVSFKKP 301
Query: 298 IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357
IGSVSVSGHKFVGCPMPCGVQ+TR+EHIN LSSNVEYLASRDATIMGSRNGHAPIFLWYT
Sbjct: 302 IGSVSVSGHKFVGCPMPCGVQLTRLEHINALSSNVEYLASRDATIMGSRNGHAPIFLWYT 361
Query: 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLA 417
LNRKGYKGFQKEVQKCLRNAHYLKDRLLD GISAMLNELSSTVVFERP+DEEF+RRWQLA
Sbjct: 362 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDVGISAMLNELSSTVVFERPRDEEFIRRWQLA 421
Query: 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
C+GNIAHVVVMP+V+ +KLDDFL++L+E RSTWY+ QPPC+AA++G+E+C C H+
Sbjct: 422 CEGNIAHVVVMPSVSQEKLDDFLSDLVEKRSTWYDGENVQPPCVAAELGNESCACKLHR 480
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735834|emb|CBI18554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/426 (89%), Positives = 404/426 (94%)
Query: 51 IVLGKNVHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDY 110
IVLG+NVH +C +VTEP+A+DEFTGDKEAYMA VLARYRKTLMERTKHHLGYPYNLDFDY
Sbjct: 13 IVLGRNVHTTCLAVTEPDANDEFTGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDY 72
Query: 111 GALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEG 170
GAL+QLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE+E +EYWGYITNCGTEG
Sbjct: 73 GALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYITNCGTEG 132
Query: 171 NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ 230
NLHGILVGREV PDGILYAS+E+HYSVFKAARMYRMECVKV +SGEIDCADFKAKLL
Sbjct: 133 NLHGILVGREVLPDGILYASQETHYSVFKAARMYRMECVKVATSLSGEIDCADFKAKLLA 192
Query: 231 NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290
NKDKPAIINVNIGTTVKGAVDDLDLVI+TLEE GFT DRFYIHCDGALFGLMMPFVK+AP
Sbjct: 193 NKDKPAIINVNIGTTVKGAVDDLDLVIETLEECGFTHDRFYIHCDGALFGLMMPFVKRAP 252
Query: 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHA 350
KV+FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHIN LS NVEYLASRDATIMGSRNGHA
Sbjct: 253 KVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINALSRNVEYLASRDATIMGSRNGHA 312
Query: 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEF 410
PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL DAGISAMLNELSSTVVFERP D+EF
Sbjct: 313 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLRDAGISAMLNELSSTVVFERPVDDEF 372
Query: 411 VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENC 470
VRRWQLACQGNIAHVVVMPNVTI+KLD FL+ELIE R+TW+ D K QPPC+AADIGSENC
Sbjct: 373 VRRWQLACQGNIAHVVVMPNVTIEKLDYFLDELIEKRNTWFLDKKVQPPCVAADIGSENC 432
Query: 471 VCAAHK 476
+C HK
Sbjct: 433 LCDLHK 438
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147815605|emb|CAN70523.1| hypothetical protein VITISV_034634 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/468 (85%), Positives = 425/468 (90%), Gaps = 2/468 (0%)
Query: 11 GGLAEKFGPVFDPTAVVAEPVPPVVTENGHELKHKTAEKE--IVLGKNVHASCFSVTEPE 68
GG E FDPTAVV EPVPPVV G + + ++ IVLG+NVH +C +VTEP+
Sbjct: 6 GGKVEILSEDFDPTAVVVEPVPPVVENGGEMGREEEEKRSKEIVLGRNVHTTCLAVTEPD 65
Query: 69 ADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPF 128
A+DEFTGDKEAYMA VLARYRKTLMERTKHHLGYPYNLDFDYGAL+QLQHFSINNLGDPF
Sbjct: 66 ANDEFTGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDYGALSQLQHFSINNLGDPF 125
Query: 129 IESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY 188
IESNYGVHSRQFEVGVLDWFARLWE+E +EYWGYITNCGTEGNLHGILVGREV PDGILY
Sbjct: 126 IESNYGVHSRQFEVGVLDWFARLWEIEKDEYWGYITNCGTEGNLHGILVGREVLPDGILY 185
Query: 189 ASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKG 248
AS+E+HYSVFKAARMYRMECVKV +SGEIDCADFKAKLL NKDKPAIINVNIGTTVKG
Sbjct: 186 ASQETHYSVFKAARMYRMECVKVATSLSGEIDCADFKAKLLANKDKPAIINVNIGTTVKG 245
Query: 249 AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKF 308
AVDDLDLVI+TLEE GFT DRFYIHCDGALFGLMMPFVK+APKV+FKKPIGSVSVSGHKF
Sbjct: 246 AVDDLDLVIETLEECGFTHDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKF 305
Query: 309 VGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368
VGCPMPCGVQITRMEHIN LS NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK
Sbjct: 306 VGCPMPCGVQITRMEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 365
Query: 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVM 428
EVQKCLRNAHYLKDRL DAGISAMLNELSSTVVFERP D+EFVRRWQLACQGNIAHVVVM
Sbjct: 366 EVQKCLRNAHYLKDRLRDAGISAMLNELSSTVVFERPXDDEFVRRWQLACQGNIAHVVVM 425
Query: 429 PNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
PNVTI+KLD FL+ LIE R+TW+ D K QPPC+AADIGSENC+C HK
Sbjct: 426 PNVTIEKLDYFLDXLIEKRNTWFLDKKVQPPCVAADIGSENCLCDLHK 473
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445703|ref|XP_003593129.1| Histidine decarboxylase [Medicago truncatula] gi|355482177|gb|AES63380.1| Histidine decarboxylase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/478 (80%), Positives = 426/478 (89%), Gaps = 10/478 (2%)
Query: 9 VNG----GLAEKFGPVFDPTAVVAEPVPPVVT-ENG-----HELKHKTAEKEIVLGKNVH 58
VNG G E FD +A++ +PVPPVV +NG ++ ++EIVLG+N+H
Sbjct: 9 VNGLSTNGAVELLPDDFDVSAIIKDPVPPVVAADNGIGKEEAKINGGKEKREIVLGRNIH 68
Query: 59 ASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQH 118
+C VTEPEADDE TGD++A+MA VLARYRK+L ERTK+HLGYPYNLDFDYGAL+QLQH
Sbjct: 69 TTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQH 128
Query: 119 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG 178
FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE NEYWGYITNCGTEGNLHGILVG
Sbjct: 129 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVG 188
Query: 179 REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAII 238
REV PDGILYASRESHYS+FKAARMYRMEC KV+ L SGEIDC DFKAKLL+++DKPAII
Sbjct: 189 REVLPDGILYASRESHYSIFKAARMYRMECEKVETLNSGEIDCDDFKAKLLRHQDKPAII 248
Query: 239 NVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298
NVNIGTTVKGAVDDLDLVIQ LEE+GF+QDRFYIH DGALFGLMMPFVK+APKV+FKKPI
Sbjct: 249 NVNIGTTVKGAVDDLDLVIQKLEEAGFSQDRFYIHVDGALFGLMMPFVKRAPKVTFKKPI 308
Query: 299 GSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358
GSVSVSGHKFVGCPMPCGVQITR+EHIN LS NVEYLASRDATIMGSRNGHAPIFLWYTL
Sbjct: 309 GSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTL 368
Query: 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLAC 418
NRKGY+GFQKEVQKCLRNAHY KDRL++AGI AMLNELSSTVVFERP DEEF+R+WQLAC
Sbjct: 369 NRKGYRGFQKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLAC 428
Query: 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
+GNIAHVVVMPNVTI+KLDDFLNEL++ R+TW+EDG QP CIA+D+G +C+CA HK
Sbjct: 429 KGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEDGTFQPYCIASDVGENSCLCAQHK 486
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 476 | ||||||
| TAIR|locus:2031133 | 482 | EMB1075 "embryo defective 1075 | 0.899 | 0.887 | 0.853 | 2.8e-208 | |
| UNIPROTKB|F1N890 | 282 | GAD2 "Uncharacterized protein" | 0.424 | 0.716 | 0.266 | 2.6e-12 | |
| UNIPROTKB|Q99259 | 594 | GAD1 "Glutamate decarboxylase | 0.415 | 0.333 | 0.285 | 6.6e-12 | |
| UNIPROTKB|Q9YI58 | 590 | GAD67 "Glutamate decarboxylase | 0.424 | 0.342 | 0.28 | 8.5e-12 | |
| UNIPROTKB|A0PA85 | 594 | GAD1 "Glutamate decarboxylase | 0.415 | 0.333 | 0.285 | 1.8e-11 | |
| UNIPROTKB|F1PRT3 | 594 | GAD1 "Glutamate decarboxylase | 0.415 | 0.333 | 0.285 | 1.8e-11 | |
| UNIPROTKB|J9P2A8 | 595 | GAD1 "Glutamate decarboxylase | 0.415 | 0.332 | 0.285 | 1.9e-11 | |
| UNIPROTKB|F1NS42 | 493 | GAD2 "Uncharacterized protein" | 0.424 | 0.409 | 0.266 | 2.2e-11 | |
| UNIPROTKB|P48319 | 594 | GAD1 "Glutamate decarboxylase | 0.415 | 0.333 | 0.285 | 2.4e-11 | |
| RGD|2652 | 593 | Gad1 "glutamate decarboxylase | 0.415 | 0.333 | 0.285 | 3.1e-11 |
| TAIR|locus:2031133 EMB1075 "embryo defective 1075" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2014 (714.0 bits), Expect = 2.8e-208, P = 2.8e-208
Identities = 366/429 (85%), Positives = 403/429 (93%)
Query: 48 EKEIVLGKNVHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLD 107
E+E+VLG+N+H + +VTEPE +DEFTGDKEAYMA VLARYRKTL+ERTK+HLGYPYNLD
Sbjct: 55 EREMVLGRNIHTTSLAVTEPEVNDEFTGDKEAYMASVLARYRKTLVERTKNHLGYPYNLD 114
Query: 108 FDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCG 167
FDYGAL QLQHFSINNLGDPFIESNYGVHSR FEVGVLDWFARLWE+E ++YWGYITNCG
Sbjct: 115 FDYGALGQLQHFSINNLGDPFIESNYGVHSRPFEVGVLDWFARLWEIERDDYWGYITNCG 174
Query: 168 TEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAK 227
TEGNLHGILVGRE+FPDGILYASRESHYSVFKAARMYRMEC KVD L+SGEIDC D + K
Sbjct: 175 TEGNLHGILVGREMFPDGILYASRESHYSVFKAARMYRMECEKVDTLMSGEIDCDDLRKK 234
Query: 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287
LL NKDKPAI+NVNIGTTVKGAVDDLDLVI+TLEE GF+ DRFYIHCDGALFGLMMPFVK
Sbjct: 235 LLANKDKPAILNVNIGTTVKGAVDDLDLVIKTLEECGFSHDRFYIHCDGALFGLMMPFVK 294
Query: 288 KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRN 347
+APKV+F KPIGSVSVSGHKFVGCPMPCGVQITRMEHI VLSSNVEYLASRDATIMGSRN
Sbjct: 295 RAPKVTFNKPIGSVSVSGHKFVGCPMPCGVQITRMEHIKVLSSNVEYLASRDATIMGSRN 354
Query: 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD 407
GHAP+FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL +AGISAMLNELSSTVVFERP+D
Sbjct: 355 GHAPLFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPKD 414
Query: 408 EEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQPPCIAADIGS 467
EEFVRRWQLACQG+IAHVVVMP+VTI+KLD+FL +L+++R WYEDG QPPC+A+++G+
Sbjct: 415 EEFVRRWQLACQGDIAHVVVMPSVTIEKLDNFLKDLVKHRLIWYEDGS-QPPCLASEVGT 473
Query: 468 ENCVCAAHK 476
NC+C AHK
Sbjct: 474 NNCICPAHK 482
|
|
| UNIPROTKB|F1N890 GAD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 60/225 (26%), Positives = 102/225 (45%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P + + S SH+SV K A + + + C G++ +D + ++L+ K K
Sbjct: 41 GMAAIPRLVAFTSEHSHFSVKKGAAALGIGTDSVILIRCDERGKMIPSDLERRILEAKQK 100
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +++ GTTV GA D L + ++ + ++H DGA G ++ K K
Sbjct: 101 GFVPFLVSATAGTTVYGAFDPLIAIADICKKY-----KIWMHVDGAWGGGLLMSRKHKWK 155
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRME---------HINVL-SSNVEYLASRDAT 341
++ + SV+ + HK +G P+ C + R E H + L + Y S D
Sbjct: 156 LNGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQSCNQMHASYLFQQDKHYDLSYDTG 215
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ G H +F LW KG GF+ ++ KCL A YL +++
Sbjct: 216 DKALQCGRHVDVFKLWLMWRAKGTTGFEAQIDKCLELAEYLYNKI 260
|
|
| UNIPROTKB|Q99259 GAD1 "Glutamate decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 63/221 (28%), Positives = 98/221 (44%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S +SHYS+ KA + + C G+I ADF+AK+L+ K K
Sbjct: 275 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQK 334
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 335 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 389
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
++ + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 390 LNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 449
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 450 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 490
|
|
| UNIPROTKB|Q9YI58 GAD67 "Glutamate decarboxylase 67" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 63/225 (28%), Positives = 98/225 (43%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L+ K K
Sbjct: 271 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQK 330
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 331 GYVPLFVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 385
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----N------VLSSNVEYLASRDAT 341
++ + SV+ + HK +G + C + R + I N + + +Y S D
Sbjct: 386 LNGIERANSVTWNPHKMMGVLLQCSAILVREKGILQGCNQMCAGYLFQQDKQYDVSYDTG 445
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ G H IF W KG GF+ ++ KCL A YL ++
Sbjct: 446 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYTKI 490
|
|
| UNIPROTKB|A0PA85 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 63/221 (28%), Positives = 96/221 (43%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L+ K K
Sbjct: 275 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQK 334
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 335 GYVPLYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 389
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
+S + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 390 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 449
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 450 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 490
|
|
| UNIPROTKB|F1PRT3 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 63/221 (28%), Positives = 96/221 (43%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L+ K K
Sbjct: 274 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQK 333
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 334 GYVPLYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 388
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
+S + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 389 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 448
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 449 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 489
|
|
| UNIPROTKB|J9P2A8 GAD1 "Glutamate decarboxylase 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 63/221 (28%), Positives = 96/221 (43%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L+ K K
Sbjct: 275 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQK 334
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 335 GYVPLYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 389
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
+S + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 390 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 449
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 450 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 490
|
|
| UNIPROTKB|F1NS42 GAD2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 60/225 (26%), Positives = 102/225 (45%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P + + S SH+SV K A + + + C G++ +D + ++L+ K K
Sbjct: 174 GMAAIPRLVAFTSEHSHFSVKKGAAALGIGTDSVILIRCDERGKMIPSDLERRILEAKQK 233
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +++ GTTV GA D L + ++ + ++H DGA G ++ K K
Sbjct: 234 GFVPFLVSATAGTTVYGAFDPLIAIADICKKY-----KIWMHVDGAWGGGLLMSRKHKWK 288
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRME---------HINVL-SSNVEYLASRDAT 341
++ + SV+ + HK +G P+ C + R E H + L + Y S D
Sbjct: 289 LNGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQSCNQMHASYLFQQDKHYDLSYDTG 348
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ G H +F LW KG GF+ ++ KCL A YL +++
Sbjct: 349 DKALQCGRHVDVFKLWLMWRAKGTTGFEAQIDKCLELAEYLYNKI 393
|
|
| UNIPROTKB|P48319 GAD1 "Glutamate decarboxylase 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 63/221 (28%), Positives = 96/221 (43%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L+ K K
Sbjct: 275 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILEAKQK 334
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 335 GYIPLYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 389
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
+S + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 390 LSGIERADSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 449
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 450 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 490
|
|
| RGD|2652 Gad1 "glutamate decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 63/221 (28%), Positives = 95/221 (42%)
Query: 178 GREVFPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQNKDK 234
G P +L+ S SHYS+ KA + + C G+I AD +AK+L K K
Sbjct: 274 GMAAVPKLVLFTSEHSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADLEAKILDAKQK 333
Query: 235 ---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291
P +N GTTV GA D + + E+ ++H D A G ++ K K
Sbjct: 334 GFVPLYVNATAGTTVYGAFDPIQEIADICEKYNL-----WLHVDAAWGGGLLMSRKHRHK 388
Query: 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI----NVLSSNV------EYLASRDAT 341
+S + SV+ + HK +G + C + + + I N + + +Y S D
Sbjct: 389 LSGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 448
Query: 342 IMGSRNG-HAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ G H IF W KG GF+ ++ KCL A YL
Sbjct: 449 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYL 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P54772 | DCHS_SOLLC | 4, ., 1, ., 1, ., 2, 2 | 0.5833 | 0.8214 | 0.9467 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.1.1.22 | 0.914 |
| 3rd Layer | 4.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 476 | |||
| PLN02263 | 470 | PLN02263, PLN02263, serine decarboxylase | 0.0 | |
| PLN03032 | 374 | PLN03032, PLN03032, serine decarboxylase; Provisio | 0.0 | |
| PRK02769 | 380 | PRK02769, PRK02769, histidine decarboxylase; Provi | 1e-166 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 1e-45 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 2e-31 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 7e-30 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 1e-26 | |
| pfam00282 | 373 | pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca | 9e-23 | |
| TIGR01788 | 431 | TIGR01788, Glu-decarb-GAD, glutamate decarboxylase | 3e-10 | |
| TIGR03799 | 522 | TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend | 9e-06 |
| >gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase | Back alignment and domain information |
|---|
Score = 992 bits (2566), Expect = 0.0
Identities = 397/458 (86%), Positives = 422/458 (92%), Gaps = 2/458 (0%)
Query: 21 FDPTAVVAEPVPPVVTENG--HELKHKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKE 78
DP +V++P+P E E+EIVLG+NVH +C +VTEPEADDEFTGDKE
Sbjct: 13 IDPDLLVSDPLPVATYNVAVVAEYGDLGGEREIVLGRNVHTTCLAVTEPEADDEFTGDKE 72
Query: 79 AYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSR 138
AYMA VLARYRKTL+ERTKHHLGYPYNLDFDYGAL QLQHFSINNLGDPFIESNYGVHSR
Sbjct: 73 AYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSR 132
Query: 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF 198
QFEVGVLDWFARLWE+E NEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF
Sbjct: 133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF 192
Query: 199 KAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQ 258
KAARMYRMECVKVD L+SGEIDCADFKAKLL NKDKPAIINVNIGTTVKGAVDDLDLVI+
Sbjct: 193 KAARMYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIK 252
Query: 259 TLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQ 318
TLEE GF+QDRFYIHCDGALFGLMMPFVK+APKV+FKKPIGSVSVSGHKFVGCPMPCGVQ
Sbjct: 253 TLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQ 312
Query: 319 ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAH 378
ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY+GFQKEVQKCLRNAH
Sbjct: 313 ITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAH 372
Query: 379 YLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDD 438
YLKDRL +AGISAMLNELSSTVVFERP+DEEFVRRWQLACQGNIAHVVVMP+VTI+KLD
Sbjct: 373 YLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLACQGNIAHVVVMPSVTIEKLDY 432
Query: 439 FLNELIENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476
FL EL+E RSTWY DGK QPPC+A D+G ENC+C+ HK
Sbjct: 433 FLKELVEKRSTWYPDGKVQPPCVAKDVGEENCLCSLHK 470
|
Length = 470 |
| >gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 747 bits (1931), Expect = 0.0
Identities = 284/374 (75%), Positives = 331/374 (88%)
Query: 74 TGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNY 133
TG+++AYMA +LA Y K L E++ H GYPYNLDFDYG L+QL +SINNLGDPFIESNY
Sbjct: 1 TGERDAYMADILASYDKLLAEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNY 60
Query: 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES 193
GVHSRQFEVGVLDWFARLWELE +EYWGYIT CGTEGNLHGILVGREVFPDGILYASRES
Sbjct: 61 GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRES 120
Query: 194 HYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL 253
HYSVFKAARMYRME VKV L SGEID D + L +N+DKPAI+NVNIGTTVKGAVDDL
Sbjct: 121 HYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDL 180
Query: 254 DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM 313
D +++ L+E G+T+DRFYIHCDGALFGLMMPFV +AP+V+F+KPIGSVSVSGHKF+GCPM
Sbjct: 181 DRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM 240
Query: 314 PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373
PCGV +TR +H+ LS NVEYL SRDATIMGSRNGHAP++LWYTL RKGY+G +++VQ C
Sbjct: 241 PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHC 300
Query: 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTI 433
+RNAHYLKDRL +AG++ LNELSSTVVFERP DE F+++WQLAC+G+IAHVVVMPNVT+
Sbjct: 301 MRNAHYLKDRLTEAGLTCRLNELSSTVVFERPMDEAFIKKWQLACEGDIAHVVVMPNVTV 360
Query: 434 DKLDDFLNELIENR 447
+KLD+F+ EL+E R
Sbjct: 361 EKLDEFVEELVEVR 374
|
Length = 374 |
| >gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 474 bits (1222), Expect = e-166
Identities = 161/365 (44%), Positives = 232/365 (63%), Gaps = 3/365 (0%)
Query: 85 LARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGV 144
+ + L ++GYP DFDY AL + FSINN GDP+ +SNY ++S FE V
Sbjct: 11 IEDFWLYLRHNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDV 70
Query: 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY 204
+++FA L+++ NE WGYITN GTEGNL+G + RE+FPDG LY S+++HYSV K AR+
Sbjct: 71 MNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL 130
Query: 205 RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG 264
R++ + L +GEID D +K+ +NK++P II NIGTT+ GA+D++ + + L++ G
Sbjct: 131 RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIG 190
Query: 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH 324
D +YIH D AL G+++PFV P SF I S+++SGHKF+G PMPCG+ + + ++
Sbjct: 191 I--DDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY 248
Query: 325 INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
+ +S +V+Y+ SRD TI GSRNGH + LW + G KG ++ VQ CL A Y DRL
Sbjct: 249 VERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRL 308
Query: 385 LDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELI 444
GI A N S TVVF P E ++W LA GN AH++ MP+ ++D ++ELI
Sbjct: 309 QANGIPAWRNPNSITVVFPCP-SERIWKKWHLATSGNQAHIITMPHHNKQQIDSLIDELI 367
Query: 445 ENRST 449
+
Sbjct: 368 FDLKN 372
|
Length = 380 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 164 bits (418), Expect = 1e-45
Identities = 87/340 (25%), Positives = 143/340 (42%), Gaps = 45/340 (13%)
Query: 122 NNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV 181
NLGDP + + E V++ + L E G T+ GTE NL +L RE
Sbjct: 88 KNLGDPDESPA----AAELEERVVNMLSDLLGAPE-EASGTFTSGGTEANLLALLAARER 142
Query: 182 FPD------------GILYASRESHYSVFKAARMYRMECVKVDCLISGE--IDCADFKAK 227
+ + S +H+S KAAR + +V + + ID +
Sbjct: 143 WRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP-TVPTDYRIDVDALEEA 201
Query: 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287
+ +N ++ GTT G++DD++ + EE G ++H D A G ++PF++
Sbjct: 202 IDENTIGGVVV-GTAGTTDTGSIDDIEELADIAEEYGI-----WLHVDAAFGGFLLPFLE 255
Query: 288 KAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS---RDAT 341
+ F + + S++V GHK+ P+ CGV + R +L YL + T
Sbjct: 256 PDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFT 315
Query: 342 IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTV 400
I+GSR G + L+ L R G +G++K + + L A YL + L G ++NE V
Sbjct: 316 ILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIV 375
Query: 401 VFERPQDEEFVRR---------WQLA---CQGNIAHVVVM 428
F DE+ + WQ+ +A V
Sbjct: 376 AFRLKDDEDTLADLSERLDRRGWQVPAQLLPKGLAIVFGT 415
|
Length = 460 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 39/348 (11%)
Query: 119 FSINNLGDPFIESNYGVH--SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGIL 176
F NLGDP G+ +++ E V+ L L + +GYI + GTE N+ +
Sbjct: 43 FIETNLGDP------GLFPGTKKIEEEVVGSLGNL--LHLPDAYGYIVSGGTEANIQAVR 94
Query: 177 VGREVFPDG------ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ 230
+ + + I+ S +H+S KAA M +E +D D + +
Sbjct: 95 AAKNLAREEKRTPNIIVPES--AHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152
Query: 231 NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA- 289
N I+ + GTT G +DD++ + + E+G Y+H D A G ++PF+KK
Sbjct: 153 NTI--GIVGI-AGTTELGQIDDIEELSKIALENGI-----YLHVDAAFGGFVIPFLKKGY 204
Query: 290 --PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLAS-RDATIMG 344
P F P + S+++ HK P+P G + R ++ LS + YL + ATI G
Sbjct: 205 NPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITG 264
Query: 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER 404
+R+G + + + G +G++K V +C+ N YL + L G ++ + + V FE
Sbjct: 265 TRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEV 324
Query: 405 PQDEEFVRR-----WQL-ACQGNIA-HVVVMPNVTIDKLDDFLNELIE 445
EE ++ W + + A +VVMP+VT + +++FL +L E
Sbjct: 325 DDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKE 372
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 7e-30
Identities = 81/380 (21%), Positives = 141/380 (37%), Gaps = 74/380 (19%)
Query: 101 GYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYW 160
G+ +D L ++ + N + + ES + + E V++W A+L+ L + +
Sbjct: 4 GFVTTMDPP-ALLLEMLTSAKNAIDFTWDESP---AATEMEAEVVNWLAKLFGLPSEDAD 59
Query: 161 GYITNCGTEGNLHGILVGR------------EVFPDGILYASRESHYSVFKAARMYRMEC 208
G T+ G+E NL +L R ++ S ++H SV KAA ++
Sbjct: 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKV 119
Query: 209 VKVDCLISGEIDCADFKAKLLQNKDK---PAIINVNIGTTVKGAVDDLDLVIQTLEESGF 265
V G +D +A + ++K + P ++ GTT GA+D L+ + E+
Sbjct: 120 RLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYD- 178
Query: 266 TQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 325
++H D A G ++PF + + + S+SV HK+ P+ C + R
Sbjct: 179 ----LWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---- 230
Query: 326 NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLL 385
L LW TL R G G+ + + + + A YL + +
Sbjct: 231 -ALK------------------------LWATLRRFGRDGYGEHIDRIVDLAKYLAELIR 265
Query: 386 -DAGISAMLNELSSTVVFERPQDEEFV--------------RRWQLA--CQGNIAH---V 425
D G + S V F R + + W + G V
Sbjct: 266 ADPGFELLGEPNLSLVCF-RLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFV 324
Query: 426 VVMPNVTIDKLDDFLNELIE 445
V P T D D L ++
Sbjct: 325 VTNPLTTRDDADALLEDIER 344
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 42/341 (12%)
Query: 123 NLGDPFIESNYGVH--SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE 180
NLGDP G+ + + E ++ L L + +GYIT+ GTE N+ + R
Sbjct: 47 NLGDP------GLFPGTAKLEEEAVEMLGEL--LHLPDAYGYITSGGTEANIQAVRAARN 98
Query: 181 V----FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPA 236
+ P+ ++ S +H+S KAA M +E + +D + + N
Sbjct: 99 LAKAEKPNIVVPES--AHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTI--G 154
Query: 237 IINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK- 295
I+ + GTT G VD I L + ++H D A G ++PF+ P F
Sbjct: 155 IVGI-AGTTELGQVDP----IPELSKIALENG-IFLHVDAAFGGFVIPFLDDPPNFDFSL 208
Query: 296 KPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRD-ATIMGSRNGHAPIF 353
+ S+++ HK P+P G + R +++ L+ + YL S+ AT+ G+R+G
Sbjct: 209 PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAA 268
Query: 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEE 409
+ + G +G++K V++C+ N +L + L + G I +LN V F+ P +E
Sbjct: 269 TYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEPVLN----IVAFDDPNPDE 324
Query: 410 FVRR-----WQLACQGN--IAHVVVMPNVTIDKLDDFLNEL 443
+ W+++ +V MP+VT + +++FL +L
Sbjct: 325 VREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDL 365
|
Length = 371 |
| >gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 9e-23
Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 55/339 (16%)
Query: 88 YRKTLMERTKH------HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFE 141
RK +M H +P + L + +IN G + S + E
Sbjct: 26 IRKNIMPGVTTWHSPNFHAYFPAGNSY-PSLLGDMLSDAINCNGFTWESSPA---CTELE 81
Query: 142 VGVLDWFARLWEL-----ENNEYWGYITNCGTEGNLHGILVGR-----EVFPDG------ 185
V+DW A++ L + E G + +E NL +L R + G
Sbjct: 82 NVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPSLGK 141
Query: 186 -ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK---PAIINVN 241
+ Y S ++H S+ KAA + +E ++ +G++ D + + ++K+ P +
Sbjct: 142 LVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCAT 201
Query: 242 IGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFG--LMMPFVKKAPKVSFKKPIG 299
+GTT GA D L + + ++H D A G + P + +
Sbjct: 202 LGTTGSGAFDPLQELGDICNKYDL-----WLHVDAAYAGSAFICPEF--RHWLFGIERAD 254
Query: 300 SVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLAS-----------RDATIMGSR 346
S S + HK++ + C R + L N EYL D I SR
Sbjct: 255 SFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSR 314
Query: 347 NGHAPIF-LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
I LW+ L G +G Q ++++ + A Y + +
Sbjct: 315 --RFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALV 351
|
Length = 373 |
| >gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 6/182 (3%)
Query: 242 IGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP-IG 299
+GTT G +D+ + L+E + T IH D A G + PFV + F+ P +
Sbjct: 194 LGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVK 253
Query: 300 SVSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDAT--IMGSRNGHAPIFLW 355
S++VSGHK+ G I R E L +V YL + T + SR + I +
Sbjct: 254 SINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQY 313
Query: 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQ 415
Y R G +G++K +Q L A YL + + G ++++ S + ++ +
Sbjct: 314 YNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYT 373
Query: 416 LA 417
L
Sbjct: 374 LY 375
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). Length = 431 |
| >gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 190 SRESHYSVFKAARMY---RMECVKVDCLISGEIDCADFKAKLLQNKD---KP-AIINVNI 242
S HYS+ KAA + R + + + ID + K + + KP AI+ V
Sbjct: 215 SERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGV-A 273
Query: 243 GTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302
GTT G +D LD + +E G + H D A G + + + SV+
Sbjct: 274 GTTETGNIDPLDEMADIAQELG-----CHFHVDAAWGGATLLSNTYRHLLKGIERADSVT 328
Query: 303 VSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA-------SRD---ATIMGSRNGHAPI 352
+ HK + PM G+ + + L S +E+ A S+D T+ GSR G A +
Sbjct: 329 IDAHKQLYVPMGAGMVLFKDPA---LMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-M 384
Query: 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKD 382
++ L+ G KG++ + + + A Y D
Sbjct: 385 LVYAGLHIIGRKGYELLIDQSIEKAKYFAD 414
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| PLN02263 | 470 | serine decarboxylase | 100.0 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 100.0 | |
| PLN02880 | 490 | tyrosine decarboxylase | 100.0 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 100.0 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 100.0 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 100.0 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 100.0 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 100.0 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 100.0 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.97 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.97 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.97 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.97 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.97 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.97 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.97 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.96 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.96 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.96 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.96 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.96 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.96 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.96 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.96 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.95 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.95 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.95 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.94 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.94 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.93 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.93 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.93 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.93 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.92 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.92 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.92 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.92 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.92 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.91 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.91 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.91 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.91 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.91 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.9 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.9 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.9 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.9 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.9 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.9 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.9 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.9 | |
| PLN02187 | 462 | rooty/superroot1 | 99.9 | |
| PRK07324 | 373 | transaminase; Validated | 99.9 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.9 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.9 | |
| PLN02656 | 409 | tyrosine transaminase | 99.9 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.9 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.9 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.9 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.89 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.89 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.89 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.89 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.89 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.89 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.89 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.89 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.89 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.89 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.89 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.89 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.89 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.89 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.88 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.88 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.88 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.88 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.88 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.88 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.88 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.88 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.88 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.88 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.88 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.87 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.87 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.87 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.87 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.87 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.87 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.87 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.87 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.87 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.87 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.87 | |
| PLN02368 | 407 | alanine transaminase | 99.87 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.86 | |
| PLN02231 | 534 | alanine transaminase | 99.86 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.86 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.86 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.86 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.85 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.85 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.85 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.85 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.85 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.84 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.84 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.83 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.83 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.83 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.83 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.83 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.83 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.83 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.83 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.83 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.83 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.82 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.82 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.82 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.82 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.82 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.81 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.81 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.81 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.81 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.81 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.81 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.81 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.81 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.81 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.81 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.81 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.81 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.81 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.8 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.8 | |
| PLN02397 | 423 | aspartate transaminase | 99.8 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.8 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.8 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.8 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.8 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.8 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.8 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.8 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.8 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.8 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.8 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.8 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.8 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.8 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.79 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.79 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.79 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.79 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.79 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.79 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.78 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.78 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.78 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.78 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.78 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.78 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.78 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.77 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.77 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.77 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.77 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.77 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.77 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.77 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.76 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.76 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.76 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.76 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.76 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.76 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.76 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.76 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.76 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.75 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.75 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.75 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.75 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.75 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.75 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.74 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.74 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.74 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.73 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.73 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.73 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.73 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.73 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.73 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.73 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.72 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.71 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.7 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.7 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.7 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.7 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.7 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.69 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.69 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.68 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.67 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.67 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.66 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.66 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.66 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.66 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.65 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.65 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.64 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.63 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.62 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.61 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.61 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.6 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.6 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.6 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.59 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.59 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.58 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.57 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.57 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.57 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.56 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.56 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.55 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.55 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.55 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.53 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.53 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.53 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.53 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.53 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.52 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.52 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.52 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.5 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.5 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.5 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.49 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.49 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.48 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.48 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.47 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.47 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.47 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.47 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.47 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.46 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.46 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.46 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.45 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.44 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.44 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.44 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.43 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.42 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.41 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.41 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.41 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.41 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.4 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.4 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.4 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.39 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.39 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.39 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.39 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.39 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.38 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.37 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.37 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.35 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.33 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.31 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.3 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.3 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.29 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.28 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.25 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.24 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.24 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.23 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.22 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.21 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.17 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.08 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.07 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.03 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.01 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.01 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 99.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 98.98 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.95 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.9 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.9 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.86 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.75 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.73 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.7 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.6 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 98.52 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 98.28 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.13 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.13 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.53 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.4 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.11 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 96.84 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.56 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 94.71 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 85.71 |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-79 Score=622.74 Aligned_cols=433 Identities=90% Similarity=1.473 Sum_probs=410.4
Q ss_pred CCccceeeeccCCcccccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCC
Q 011842 44 HKTAEKEIVLGKNVHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINN 123 (476)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~ 123 (476)
.....|+++++++.+..+|+..+|+..++...+....++.+++++.+.+.++..+++|||.+..++++.+++++.+.+||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gYp~n~~~d~s~l~~~l~~~~nN 117 (470)
T PLN02263 38 DLGGEREIVLGRNVHTTCLAVTEPEADDEFTGDKEAYMASVLARYRKTLVERTKHHLGYPYNLDFDYGALGQLQHFSINN 117 (470)
T ss_pred cccccceeeeecccccccccccCCCCchhhhhcchhhHHHHHHHHHHHHHhcccceeCCCCcccCChhhHHHHHHhhccC
Confidence 44558899999999999999999999887777776678999999999999999999999999999889999999999999
Q ss_pred CCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH
Q 011842 124 LGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM 203 (476)
Q Consensus 124 ~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~ 203 (476)
.|++|..++++.+++++|+++.+|+++++|++++.++|++|+|||+||++|++++|+..++.++|+|+.+|+|+.|++++
T Consensus 118 ~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~l 197 (470)
T PLN02263 118 LGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM 197 (470)
T ss_pred CCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHh
Confidence 99999999999899999999999999999998766789999999999999999999988888999999999999999999
Q ss_pred cCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 204 YRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 204 ~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
+|++++.||++++|+||+++|+++|.+++.+|++|++|.|||++|++|||++|+++|++||+++.++|+||||||||+++
T Consensus 198 lgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l 277 (470)
T PLN02263 198 YRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM 277 (470)
T ss_pred cCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh
Confidence 99999999999999999999999999888889999999999999999999999999999998777889999999999999
Q ss_pred cccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 284 PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
|+.++.+.+++.+.+|||++|+|||+++|++||++++|+++++.+...++|+...+.++.+||++..++++|++|+.+|.
T Consensus 278 Pf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~ 357 (470)
T PLN02263 278 PFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY 357 (470)
T ss_pred hhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCH
Confidence 98888777888878999999999999999999999999888888888899999999999999999889999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
+|++++++++.+++++|.++|++.|+..+.+|.+++|+|+.|.++...++|++++.++.+|++++|++|.+.||.|+++|
T Consensus 358 ~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~~~~~~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL 437 (470)
T PLN02263 358 RGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLACQGNIAHVVVMPSVTIEKLDYFLKEL 437 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCchHHhhcceEEccCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999998876667899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCccccccCCcccccccCC
Q 011842 444 IENRSTWYEDGKRQPPCIAADIGSENCVCAAHK 476 (476)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (476)
++..+.++.|++..+||+|+|+|++||+|++|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (470)
T PLN02263 438 VEKRSTWYPDGKVQPPCVAKDVGEENCLCSLHK 470 (470)
T ss_pred HHHHhhhhhccccCCceeecccccccchhhccC
Confidence 999999999999999999999999999999996
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=486.28 Aligned_cols=372 Identities=76% Similarity=1.327 Sum_probs=344.6
Q ss_pred CCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCC
Q 011842 75 GDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEL 154 (476)
Q Consensus 75 ~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~ 154 (476)
+|......++++.+.+.+......++|||.+..++++.+..++.+..++.|+++..++++..+.++|+++++|+++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~ 81 (374)
T PLN03032 2 GERDAYMADILASYDKLLAEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEL 81 (374)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 45556678999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCC
Q 011842 155 ENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK 234 (476)
Q Consensus 155 ~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~ 234 (476)
++++.+|+||+|||+||++|++++|+..++.+||++..+|+|+.++++++|++++.||++++|.||+++|+++|++++.+
T Consensus 82 ~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~ 161 (374)
T PLN03032 82 EKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDK 161 (374)
T ss_pred CCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcCCC
Confidence 87667899999999999999999998777789999999999999999999999999999999999999999999987777
Q ss_pred cEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCC
Q 011842 235 PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMP 314 (476)
Q Consensus 235 p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~ 314 (476)
|++|+++.++|++|++||+++|+++|++||+.+.++|+|||+||+++.+|+....+.+++...+||+++|+|||+++|++
T Consensus 162 ~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g 241 (374)
T PLN03032 162 PAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMP 241 (374)
T ss_pred CEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcC
Confidence 89999999999999999999999999999864456699999999999888766666677776799999999999999999
Q ss_pred ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec
Q 011842 315 CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN 394 (476)
Q Consensus 315 ~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~ 394 (476)
||++++|+++++.+....+|+...+.++.|||++..++++|++|+.+|.+|++++++++.+++++|.++|++.++..+.+
T Consensus 242 ~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~ 321 (374)
T PLN03032 242 CGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLN 321 (374)
T ss_pred eEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEC
Confidence 99999999888888888999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCeeEEEEecCCcHHHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 395 ELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 395 ~~~~iv~f~~~~~~~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
|.+++|+|+.|.++.+.++|++++.+..+|++++|++|++.||+|+++|++.
T Consensus 322 p~~~~V~f~~~~~~~~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 322 ELSSTVVFERPMDEAFIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred CCceEEEEcCCCcHhHhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 9999999999876667799999998899999999999999999999999764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-57 Score=458.43 Aligned_cols=364 Identities=44% Similarity=0.801 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccE
Q 011842 82 AGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWG 161 (476)
Q Consensus 82 ~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g 161 (476)
.+.++.+...+......++|||.+..++++.+.+++.+..|+.|+++..+.++..+.++|+++++|+++++|+++++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G 87 (380)
T PRK02769 8 QKEIEDFWLYLRHNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWG 87 (380)
T ss_pred HHHHHHHHHHHHHhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCE
Confidence 57888899888888888999999999988999999999999999998888888889999999999999999998666689
Q ss_pred EEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEe
Q 011842 162 YITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVN 241 (476)
Q Consensus 162 ~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t 241 (476)
+||+|||+||+.|++++|++.++++||+++.+|+|+.++++.+|++.+.|+++++|+||+++|+++|++++++|.+|+++
T Consensus 88 ~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t 167 (380)
T PRK02769 88 YITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFAN 167 (380)
T ss_pred EEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEE
Confidence 99999999999999999988889999999999999999999999999999999899999999999999887778899999
Q ss_pred eCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEee
Q 011842 242 IGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITR 321 (476)
Q Consensus 242 ~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~ 321 (476)
+++|++|.+||+++|+++|++||+ .++|+|||+||+++.+|+.++.+.+++.+.+||+++|+|||+++|++||++++|
T Consensus 168 ~gtt~tG~idpi~~I~~i~~~~g~--~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r 245 (380)
T PRK02769 168 IGTTMTGAIDNIKEIQEILKKIGI--DDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK 245 (380)
T ss_pred eCCCCCcccCCHHHHHHHHHHhCC--CceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEe
Confidence 999999999999999999999981 112999999999999998877667888778999999999999999999999999
Q ss_pred hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEE
Q 011842 322 MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVV 401 (476)
Q Consensus 322 ~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~ 401 (476)
++..+.+....+|+...+.++.|||++..++++|++++.+|.+|++++++++.++++||.++|++.|+..+.+|.+++|+
T Consensus 246 ~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~ 325 (380)
T PRK02769 246 KKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVV 325 (380)
T ss_pred hhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEE
Confidence 98877776778999888889999999999999999999999999999999999999999999999999888899999999
Q ss_pred EecCCcHHHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 402 FERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 402 f~~~~~~~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|+.|.+ ++.++|++++.+..+|++++|++|++.||+|+++|.+...
T Consensus 326 f~~~~~-~~~~~w~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 326 FPCPSE-RIWKKWHLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred EcCCCH-HHHhCeeEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 998865 4579999999889999999999999999999999988765
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=465.34 Aligned_cols=386 Identities=19% Similarity=0.249 Sum_probs=327.2
Q ss_pred cccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCc
Q 011842 59 ASCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPF 128 (476)
Q Consensus 59 ~~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~ 128 (476)
.+++...+|+++.. .+|++|++++++++++.+.+.++.+ +|+||+++++. ++.+++++...+|+.+..|
T Consensus 84 ~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~-~~~hP~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~ 162 (539)
T PLN02590 84 FPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGIT-HWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTW 162 (539)
T ss_pred CCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCC-cCCCCCeeEeccCCCcHHHHHHHHHHHhcccccCCc
Confidence 35667777776664 7899999999999999999999886 68999999874 6889999999999999999
Q ss_pred ccCccchhhHHHHHHHHHHHHHHcCCCCC-----cccEEEcCCchhHHHHHHHHHHhh---------CCCcEEEecCCCc
Q 011842 129 IESNYGVHSRQFEVGVLDWFARLWELENN-----EYWGYITNCGTEGNLHGILVGREV---------FPDGILYASRESH 194 (476)
Q Consensus 129 ~~~~~~~~~~~le~~~~~~la~l~g~~~~-----~~~g~~t~ggt~An~~al~aa~~~---------~p~~~Vl~s~~~H 194 (476)
..+| ..+++|+++.+|+++++|++.. ..+|+||+|||+||++|+.+||++ .|+.+||+|+.+|
T Consensus 163 ~~sP---a~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH 239 (539)
T PLN02590 163 LTSP---AATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTH 239 (539)
T ss_pred ccCc---hhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCch
Confidence 9888 6789999999999999999853 256999999999999999999984 2566899999999
Q ss_pred hHHHHHHHHcCC---eEEEEeCCC--CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCC
Q 011842 195 YSVFKAARMYRM---ECVKVDCLI--SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFT 266 (476)
Q Consensus 195 ~S~~~~~~~~G~---~v~~v~~~~--~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~ 266 (476)
+|+.|+++++|+ +++.||++. +++||+++|+++|+++ +..|++|++|.|||.+|++|||++|+++|++||+
T Consensus 240 ~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~- 318 (539)
T PLN02590 240 SSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI- 318 (539)
T ss_pred HHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCC-
Confidence 999999999999 599999984 5799999999999764 4579999999999999999999999999999999
Q ss_pred CCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCC-------
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLAS------- 337 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~------- 337 (476)
|+||||||||+++.+.++...+.+.+.+|||++++|||+++|++||++++|++ +.+++...+.|+..
T Consensus 319 ----WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~ 394 (539)
T PLN02590 319 ----WLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDT 394 (539)
T ss_pred ----eEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCccccccc
Confidence 99999999998776666555567778899999999999999999999999986 45667777788742
Q ss_pred ----CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE-eecCCeeEEEEecCC---c--
Q 011842 338 ----RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA-MLNELSSTVVFERPQ---D-- 407 (476)
Q Consensus 338 ----~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~iv~f~~~~---~-- 407 (476)
.++++++||+ +.++++|.+|+.+|.+|++++++++.++|++|.+.|++.+.+. +.++..++|+|+..+ +
T Consensus 395 ~~d~~d~~i~lsRr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~ 473 (539)
T PLN02590 395 VVNYKDWQISLSRR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDED 473 (539)
T ss_pred CCCccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHH
Confidence 2457889998 5789999999999999999999999999999999999976444 556678999998642 1
Q ss_pred --HHH----hhce------eec----ccCCEEEEE-EcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 408 --EEF----VRRW------QLA----CQGNIAHVV-VMPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 408 --~~~----~~~~------~l~----~~~~~lRv~-~~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
+.+ .+++ .+. .+...+|++ ++|.+|++||+.+++.|.+..+++.++.
T Consensus 474 ~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~~ 537 (539)
T PLN02590 474 QCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRND 537 (539)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 111 1111 111 123578976 5899999999999999999988887653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=443.57 Aligned_cols=382 Identities=19% Similarity=0.257 Sum_probs=316.4
Q ss_pred ccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcc
Q 011842 60 SCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFI 129 (476)
Q Consensus 60 ~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~ 129 (476)
+++...+|+++.. .+|++|.+++++++++.+.+.++.. +|+||+++++. .+.+++++...+|+++..|.
T Consensus 37 pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~-~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~~~~~~~ 115 (490)
T PLN02880 37 PVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVT-HWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWI 115 (490)
T ss_pred CCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCC-CCCCCCeeEeccCCCcHHHHHHHHHHHhhccCCcccc
Confidence 3455566655543 6789999999999999999988886 68899998874 57899999999999999999
Q ss_pred cCccchhhHHHHHHHHHHHHHHcCCCCCc-----ccEEEcCCchhHHHHHHHHHHhhC---------CCcEEEecCCCch
Q 011842 130 ESNYGVHSRQFEVGVLDWFARLWELENNE-----YWGYITNCGTEGNLHGILVGREVF---------PDGILYASRESHY 195 (476)
Q Consensus 130 ~~~~~~~~~~le~~~~~~la~l~g~~~~~-----~~g~~t~ggt~An~~al~aa~~~~---------p~~~Vl~s~~~H~ 195 (476)
.+| ..+++|+++.+|+++++|++... .+|++|+|||+||++|+.+||++. ++.+||+|+.+|+
T Consensus 116 ~sp---~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~ 192 (490)
T PLN02880 116 TSP---AATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHS 192 (490)
T ss_pred cCc---ccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchH
Confidence 887 57899999999999999998531 469999999999999999999842 4568999999999
Q ss_pred HHHHHHHHcCCe---EEEEeCCC--CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCC
Q 011842 196 SVFKAARMYRME---CVKVDCLI--SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQ 267 (476)
Q Consensus 196 S~~~~~~~~G~~---v~~v~~~~--~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~ 267 (476)
|+.|+++++|+. ++.||++. +++||+++|+++|+++ +..|++|++|.|||.+|++|||++|+++|++||+
T Consensus 193 Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i-- 270 (490)
T PLN02880 193 ALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM-- 270 (490)
T ss_pred HHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC--
Confidence 999999999994 89999975 5799999999999753 5679999999999999999999999999999999
Q ss_pred CceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCCC-------
Q 011842 268 DRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLASR------- 338 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~~------- 338 (476)
|+|||||||++++....+...+.+.+.+||+++++|||+++|++||++++|+. +.+.+.....|+...
T Consensus 271 ---wlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~ 347 (490)
T PLN02880 271 ---WFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSV 347 (490)
T ss_pred ---EEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCC
Confidence 99999999998765544444466667799999999999999999999999975 346676777777542
Q ss_pred ----CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEeecCCeeEEEEecCCc------
Q 011842 339 ----DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAMLNELSSTVVFERPQD------ 407 (476)
Q Consensus 339 ----~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~~~~~iv~f~~~~~------ 407 (476)
+.++..||+ +.++++|.+++.+|.++++++++++.++++++.+.|++.+ +.++.++..++|+|+.++.
T Consensus 348 ~~~~~~~i~~~rr-~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~ 426 (490)
T PLN02880 348 VDYKDWQIPLGRR-FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDN 426 (490)
T ss_pred CChhccCcCCCCc-ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhh
Confidence 234667776 4579999999999999999999999999999999998875 4444566789999997531
Q ss_pred -H----HHhhce------eec----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 -E----EFVRRW------QLA----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 -~----~~~~~~------~l~----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ .+.+++ .+. .+..++|+++ +|.+|.+||+.+++.|.++.+++.
T Consensus 427 ~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 122221 121 2346889875 788889999999999999988764
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=416.83 Aligned_cols=414 Identities=27% Similarity=0.330 Sum_probs=335.7
Q ss_pred ccccCCCCCcccccccCCCCccccccccccCCccceeeeccCCcccccccccCCCcccc----ccCCCCCcHHHHHHHHH
Q 011842 14 AEKFGPVFDPTAVVAEPVPPVVTENGHELKHKTAEKEIVLGKNVHASCFSVTEPEADDE----FTGDKEAYMAGVLARYR 89 (476)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~ 89 (476)
.+.+..++++.+++ ++.++.|.+...+ .+.-|.+...|.++|.+|+.+.+ ++++++.+.++|+++++
T Consensus 20 ~D~L~~~~~~~~~t-e~fl~~v~~~ll~--------~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr 90 (510)
T KOG0629|consen 20 RDLLPDDVAGEEVT-EPFLRAVVDILLD--------YVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCR 90 (510)
T ss_pred hhccccccCCchhh-HhhhHHHHHHHHH--------hhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHH
Confidence 45677888888888 5555554444431 13445677789999999999986 89999999999999999
Q ss_pred HHHhcccccccCCCCcCCc-----c-hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEE
Q 011842 90 KTLMERTKHHLGYPYNLDF-----D-YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYI 163 (476)
Q Consensus 90 ~~~~~~~~~~~g~p~~~~~-----~-~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~ 163 (476)
+.+..+.+. |||++++. + .+..++++.+..|.+..+++..| ...-+|.++...+.++.|++.. .++||
T Consensus 91 ~tl~y~vKT--gHprffNQl~~glD~~~Lag~wlT~t~Ntn~~TYEiAP---vF~lmE~~vl~km~~ivGw~~~-~DgIf 164 (510)
T KOG0629|consen 91 DTLKYSVKT--GHPRFFNQLSSGLDPIGLAGEWLTSTANTNMFTYEIAP---VFVLMEEEVLAKMREIVGWEEG-GDGIF 164 (510)
T ss_pred HHHHhhhcc--CCCcchhhhccCCCHHHHHHHHHHhccCCCCceEEecc---eEEeehHHHHHHHHHHhCCCCC-CCcee
Confidence 999999875 89998743 3 56677888888888888888777 4668899999999999999964 67999
Q ss_pred cCCchhHHHHHHHHHHhh------------CCCcEEEecCCCchHHHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHH
Q 011842 164 TNCGTEGNLHGILVGREV------------FPDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKL 228 (476)
Q Consensus 164 t~ggt~An~~al~aa~~~------------~p~~~Vl~s~~~H~S~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l 228 (476)
++||+.+|++++.+||.. .|..++++|+.+|||+.++++++|+ +++.|++++.|.|++++||+.|
T Consensus 165 ~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~ki 244 (510)
T KOG0629|consen 165 APGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKI 244 (510)
T ss_pred cCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHH
Confidence 999999999999999874 3567899999999999999999995 7999999999999999999999
Q ss_pred HcCCC---CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcC
Q 011842 229 LQNKD---KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSG 305 (476)
Q Consensus 229 ~~~~~---~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~ 305 (476)
.++.. .|++|.+|+|||+.|++|||..|+++|++|++ |+|||+||||+.+-+.++..++++.+++||+++++
T Consensus 245 le~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~l-----WmHvDAAwGGglLmS~k~R~kl~Giera~Svtwnp 319 (510)
T KOG0629|consen 245 LEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKL-----WMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNP 319 (510)
T ss_pred HHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCE-----EEEeecccccccccChhhHhhccCccccCceeecH
Confidence 76543 59999999999999999999999999999999 99999999998777777777899999999999999
Q ss_pred CCCCCCCCCceeEEeehhh-h-hhhcCCccccCCCC-----------CcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 306 HKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASRD-----------ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 306 hK~l~~p~~~G~l~~~~~~-~-~~l~~~~~yl~~~~-----------~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
||++++|..||++++|.+. + +.-...+.|+++.+ ..++++|.. ..+++|.+|++.|.+|+++.+++
T Consensus 320 HK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~-D~FKlWlmwkaKG~~Gfe~~v~k 398 (510)
T KOG0629|consen 320 HKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV-DVFKLWLMWKAKGTQGFEAQVDK 398 (510)
T ss_pred HHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc-cHHHHHHHHHhcccccHHHHHHH
Confidence 9999999999999999873 3 33355667777653 456788764 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEee---cCC-eeEEEEecCCc-------HHHhhcee-e-------------------c--cc
Q 011842 373 CLRNAHYLKDRLLDAGISAML---NEL-SSTVVFERPQD-------EEFVRRWQ-L-------------------A--CQ 419 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~---~~~-~~iv~f~~~~~-------~~~~~~~~-l-------------------~--~~ 419 (476)
+.++|+||.++|++.+.+.++ .|. .++.++.+|.. .+...++. + + ..
T Consensus 399 ~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~ 478 (510)
T KOG0629|consen 399 CLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDK 478 (510)
T ss_pred HHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccc
Confidence 999999999999998765443 244 34444444421 11111111 0 1 12
Q ss_pred CCEEEEEE-cCCCCHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVV-MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 420 ~~~lRv~~-~~~~T~edid~~~~~l~~~~~ 448 (476)
.+.+|+++ ++..|.+|+|.+++.|..+.+
T Consensus 479 ~nffr~v~sn~a~~~ad~dflldEIerlgq 508 (510)
T KOG0629|consen 479 PNFFRMVISNPALTEADLDFLLDEIERLGQ 508 (510)
T ss_pred cchhheecccchhhhhhHHHHHHHHHHhcc
Confidence 36788765 566799999999999987653
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=416.10 Aligned_cols=323 Identities=28% Similarity=0.432 Sum_probs=271.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVL 145 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~ 145 (476)
.++|++|.+.+++++++.+.+.++.+ +|.||+++++. .+.+++++...+|+++..+..+| ..+++|+++.
T Consensus 10 ~~lp~~~~~~~~vl~~~~~~l~~~~~-~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P---~~~~~E~~vi 85 (373)
T PF00282_consen 10 EELPEEGESLEEVLKDLREILAPGVT-HWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASP---AATEIEREVI 85 (373)
T ss_dssp CCHHSSHH-HHHHHHHHHHHTHGCS--TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSH---HHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhhccCC-CCCChhHhhhccCCccHHHHHHHHHHhhhccccccccccc---ccccchHHHH
Confidence 48899999999999999999999876 68889998875 57889999999999888888876 6789999999
Q ss_pred HHHHHHcCCCCC-----cccEEEcCCchhHHHHHHHHHHhhC------------CCcEEEecCCCchHHHHHHHHcCCeE
Q 011842 146 DWFARLWELENN-----EYWGYITNCGTEGNLHGILVGREVF------------PDGILYASRESHYSVFKAARMYRMEC 208 (476)
Q Consensus 146 ~~la~l~g~~~~-----~~~g~~t~ggt~An~~al~aa~~~~------------p~~~Vl~s~~~H~S~~~~~~~~G~~v 208 (476)
+|+++++|++.+ ..+|++|+|||+||++|++++|++. ++.+||+|+.+|||+.|+++++|+.+
T Consensus 86 ~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~ 165 (373)
T PF00282_consen 86 RWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGV 165 (373)
T ss_dssp HHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEE
T ss_pred HHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeeeEE
Confidence 999999999932 2579999999999999999998741 34689999999999999999999999
Q ss_pred EEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+.||++++++||+++|+++|+++ +..|++|++|.|||.+|++||+++|+++|++|++ |+|||+||||..+..
T Consensus 166 ~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~-----wlHVDaA~gg~~~~~ 240 (373)
T PF00282_consen 166 RKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNI-----WLHVDAAYGGSALLS 240 (373)
T ss_dssp EEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT------EEEEEETTGGGGGGH
T ss_pred EEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccce-----eeeeccccccccccc
Confidence 99999999999999999999754 4568899999999999999999999999999999 999999999854433
Q ss_pred cccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCCC-----------CCcccCCCCChhHH
Q 011842 286 VKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR-----------DATIMGSRNGHAPI 352 (476)
Q Consensus 286 ~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~~-----------~~~~~~sr~~~~~l 352 (476)
........+.+.+|||++|+|||+++|++||++++|++. ...+...+.|+... +.++++|| +..++
T Consensus 241 ~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~al 319 (373)
T PF00282_consen 241 PEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRAL 319 (373)
T ss_dssp CTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHH
T ss_pred ccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccc-cchHH
Confidence 333334666778999999999999999999999999873 34566678898832 35789999 67899
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cCCeeEEEEec
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NELSSTVVFER 404 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~iv~f~~ 404 (476)
++|.+|+.+|.+|+++++++..+++++|.++|++.+.+.+. ++..++|+|+.
T Consensus 320 k~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~ 372 (373)
T PF00282_consen 320 KLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRY 372 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEe
Confidence 99999999999999999999999999999999998866665 56689999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=407.60 Aligned_cols=334 Identities=19% Similarity=0.243 Sum_probs=280.5
Q ss_pred ccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchH-------HHHHHHHHhhCCCCCCcccCc
Q 011842 60 SCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYG-------ALAQLQHFSINNLGDPFIESN 132 (476)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~-------~l~~~l~~~~n~~g~~~~~~~ 132 (476)
+.+.-.+|.+....+|+.|...+++++++.+.+.+++. +|.||+++++.++ .+++ +..++|+++..|+.+|
T Consensus 48 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~hP~f~g~~~~~~p~~~~~l~~-l~~~lN~n~~~~~~sp 125 (522)
T TIGR03799 48 KPLSEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSV-HTASPSFIGHMTSALPYFMLPLSK-LMVALNQNLVKIETSK 125 (522)
T ss_pred CCchhhhhcccccCCCCCCCChHHHHHHHHHHHHcCCC-CCCCCCeEEeccCCCchHHHHHHH-HHHHhcCCcceeecCc
Confidence 44555566666678999999999999999988888765 7899999987522 2455 5567998888999888
Q ss_pred cchhhHHHHHHHHHHHHHHcCCC-----------CCcccEEEcCCchhHHHHHHHHHHhhC-------------------
Q 011842 133 YGVHSRQFEVGVLDWFARLWELE-----------NNEYWGYITNCGTEGNLHGILVGREVF------------------- 182 (476)
Q Consensus 133 ~~~~~~~le~~~~~~la~l~g~~-----------~~~~~g~~t~ggt~An~~al~aa~~~~------------------- 182 (476)
..+++|+++.+|++++++.. ++..+|++|+|||+||++|+++||++.
T Consensus 126 ---a~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~ 202 (522)
T TIGR03799 126 ---AFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAAL 202 (522)
T ss_pred ---chHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhh
Confidence 57899999999999998521 233679999999999999999999852
Q ss_pred -----CCcEEEecCCCchHHHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHHHc---CCCCcEEEEEeeCCCcccccc
Q 011842 183 -----PDGILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVD 251 (476)
Q Consensus 183 -----p~~~Vl~s~~~H~S~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id 251 (476)
++.+||+|+.+|+|+.|+++++|+ +++.||+|++|+||+++|+++|++ ...+|++|+.++|||.+|++|
T Consensus 203 ~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiD 282 (522)
T TIGR03799 203 KHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNID 282 (522)
T ss_pred hhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcC
Confidence 245899999999999999999999 799999999999999999999974 344688899999999999999
Q ss_pred CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcC
Q 011842 252 DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSS 330 (476)
Q Consensus 252 ~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~ 330 (476)
||++|+++|++||+ |+|||+||+++.++..++...+.+.+.+||+++|+|||+++|++||++++|++ +.+.+..
T Consensus 283 pl~eIa~i~~~~g~-----~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~ 357 (522)
T TIGR03799 283 PLDEMADIAQELGC-----HFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH 357 (522)
T ss_pred CHHHHHHHHHHcCC-----eEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence 99999999999999 99999999987665544444456666799999999999999999999999975 5566777
Q ss_pred CccccCC------CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEeecCCeeEEEEe
Q 011842 331 NVEYLAS------RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAMLNELSSTVVFE 403 (476)
Q Consensus 331 ~~~yl~~------~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~~~~~iv~f~ 403 (476)
.+.|+.. .+.++++||++. ++++|++++.+|.+|+++++++..+++++|.+.|++.+ +.++.++..++|+|+
T Consensus 358 ~~~Yl~~~~~~d~~~~~legsR~~~-al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr 436 (522)
T TIGR03799 358 HAEYILRKGSKDLGSHTLEGSRPGM-AMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYR 436 (522)
T ss_pred CcchhcCCCCCccccceeecCcchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEE
Confidence 7788742 135788999866 68999999999999999999999999999999999875 444455668999998
Q ss_pred c
Q 011842 404 R 404 (476)
Q Consensus 404 ~ 404 (476)
.
T Consensus 437 ~ 437 (522)
T TIGR03799 437 Y 437 (522)
T ss_pred E
Confidence 5
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=384.69 Aligned_cols=325 Identities=26% Similarity=0.357 Sum_probs=281.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCc------chHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDF------DYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVL 145 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~------~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~ 145 (476)
...|+.+.+.+.++.++............|+|.+..+ ++..+.+++...++.+...+..++ +++++|+++.
T Consensus 31 ~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~p---~a~~~E~~~v 107 (460)
T COG0076 31 RMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESP---AAAELEERVV 107 (460)
T ss_pred ccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccCh---hHHHHHHHHH
Confidence 3789999999999999998855555556677886543 367788888888886666676676 6889999999
Q ss_pred HHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC------------CcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 146 DWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP------------DGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 146 ~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p------------~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
.|+++++|++ +...|+||+|||+||++|++++|++.. .++||+|..+|+|+.|+++++|++.+.+++
T Consensus 108 ~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~ 186 (460)
T COG0076 108 NMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPT 186 (460)
T ss_pred HHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEe
Confidence 9999999998 457899999999999999999988532 237999999999999999999999999999
Q ss_pred CC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
++ +.+||+++|+++|++++-.. +|+.+.|||++|.+|||++|+++|+++++ |+|||+|+||+++|+..+...+
T Consensus 187 ~~~~~~id~~~l~~~i~~~t~~g-~vV~~aGtT~~G~iDdi~~ia~ia~~~~i-----~lHVDAA~GG~~~pf~~~~~~~ 260 (460)
T COG0076 187 VPTDYRIDVDALEEAIDENTIGG-VVVGTAGTTDTGSIDDIEELADIAEEYGI-----WLHVDAAFGGFLLPFLEPDGRW 260 (460)
T ss_pred ccCccccCHHHHHHHHHhhccCc-eEEEEecCCCCCccCCHHHHHHHHHHcCC-----cEEEEccccceeecccCccchh
Confidence 87 79999999999999987533 58999999999999999999999999999 9999999999999999988775
Q ss_pred CC-cccccEEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCC---CCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 293 SF-KKPIGSVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLAS---RDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 293 ~~-~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~---~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
++ .+++|||++|+|||+++|++||++++|++ +.+.+.....|+.+ ...++.+||++..++++|+.++.+|.+||
T Consensus 261 ~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy 340 (460)
T COG0076 261 DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGY 340 (460)
T ss_pred hcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHH
Confidence 54 45799999999999999999999999988 44555666667764 34678899999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CeEeecCCeeEEEEecCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAG-ISAMLNELSSTVVFERPQ 406 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g-~~~~~~~~~~iv~f~~~~ 406 (476)
+++++++.+++++|.++|++.| +..+.+|..++|+|+.++
T Consensus 341 ~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 341 RKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 9999999999999999999998 555566788999999754
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=378.22 Aligned_cols=364 Identities=22% Similarity=0.217 Sum_probs=291.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc----hHHHHHHHHHhhC-CCCCCcccCccchhhHHHHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD----YGALAQLQHFSIN-NLGDPFIESNYGVHSRQFEVGVLD 146 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~----~~~l~~~l~~~~n-~~g~~~~~~~~~~~~~~le~~~~~ 146 (476)
..+|+.|.+++++++.+...+... +-.||.++++. ...+.+++...++ +.+++ ..+ + ..+++|+++++
T Consensus 15 ~~~p~~~~~~~~~~~~~~~~iyld---~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np-~s~--~-~~~~le~~~~~ 87 (431)
T TIGR01788 15 YRMPEEEMPPDAAYQLIHDELSLD---GNPRLNLATFVTTWMEPEARKLMDETINKNMIDK-DEY--P-QTAEIENRCVN 87 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHhhhc---CCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCc-ccC--c-cHHHHHHHHHH
Confidence 478999999999999999876432 22467766553 3446677766676 44444 333 2 34599999999
Q ss_pred HHHHHcCCC-C-CcccEEEcCCchhHHHHHHHHHHhhC-----------CCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 147 WFARLWELE-N-NEYWGYITNCGTEGNLHGILVGREVF-----------PDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 147 ~la~l~g~~-~-~~~~g~~t~ggt~An~~al~aa~~~~-----------p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
|+++++|++ + ++..+++|+||||||++|+.++++.. ++.+||+++.+|+|+.++++++|++++.||+
T Consensus 88 ~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~ 167 (431)
T TIGR01788 88 MLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPM 167 (431)
T ss_pred HHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEec
Confidence 999999998 3 35667889999999999998887421 1348999999999999999999999999999
Q ss_pred CCC-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh------CCCCCceEEEEecCccccccccc
Q 011842 214 LIS-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES------GFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 214 ~~~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~------g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+++ +.+|+++|+++|++++ .+|++++++|.+|++||+++|+++|+++ |+ |+|||+||+|+.+|+.
T Consensus 168 d~~~~~vd~~~L~~~i~~~t---~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~-----~~HvDaaq~g~~~p~~ 239 (431)
T TIGR01788 168 DPGRYVIDPEQVVEAVDENT---IGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDI-----PIHVDAASGGFIAPFV 239 (431)
T ss_pred CCCceeeCHHHHHHHHhhCC---eEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCc-----eEEEecccHHHHHHHh
Confidence 875 5899999999998775 4899999999999999999999999999 89 9999999998887654
Q ss_pred ccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHh
Q 011842 287 KKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 287 ~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
.....+++. +.+||+++|+|||+++|.++|++++|++ +...+...++|+... +.++.+||++..+++.|..++.+
T Consensus 240 ~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~l 319 (431)
T TIGR01788 240 YPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRL 319 (431)
T ss_pred CCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHh
Confidence 443334443 4599999999999988999999999986 335566667788653 35788999887788999999999
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-c-CCeeEEEEecCC------c-HHHh-----hceeecc--------c
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-N-ELSSTVVFERPQ------D-EEFV-----RRWQLAC--------Q 419 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~-~~~~iv~f~~~~------~-~~~~-----~~~~l~~--------~ 419 (476)
|..|++++++++.+++++|.++|++.+.+.+. + +..++|+|+..+ + .++. ++|.+.+ .
T Consensus 320 G~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~ 399 (431)
T TIGR01788 320 GREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAED 399 (431)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCC
Confidence 99999999999999999999999998755544 3 568999998653 1 1222 3443311 2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
...+|++++++++++.+++|+++|+++...+
T Consensus 400 ~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 400 IVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 2468999999999999999999999987653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=379.32 Aligned_cols=322 Identities=22% Similarity=0.247 Sum_probs=267.9
Q ss_pred cCCCCCcHHHHHHHHHHHHhcccccccCCC-CcCCcc------hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHH
Q 011842 74 TGDKEAYMAGVLARYRKTLMERTKHHLGYP-YNLDFD------YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLD 146 (476)
Q Consensus 74 ~~~~~~~~~~il~~~~~~~~~~~~~~~g~p-~~~~~~------~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~ 146 (476)
..+....++++++++.+.+..++. .|.|| +++++. ++.+++++...+|+++..|+.+| .++.+|+++.+
T Consensus 55 ~~~~~~~~~~~l~~l~~~l~~~sv-~~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP---~~t~lE~~vi~ 130 (608)
T TIGR03811 55 FTKTVNNMKDVLDELSSRLRTESV-PWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSP---ATSQMEEEVGK 130 (608)
T ss_pred cccCccCHHHHHHHHHHHHhcCCC-CCCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCc---hHHHHHHHHHH
Confidence 444555689999999998877664 56778 777663 68899999999999999999888 67899999999
Q ss_pred HHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC--C-----------------------------------------
Q 011842 147 WFARLWELENNEYWGYITNCGTEGNLHGILVGREVF--P----------------------------------------- 183 (476)
Q Consensus 147 ~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~--p----------------------------------------- 183 (476)
|+++++|++. .+|+||+|||+||+.|+++||+.. |
T Consensus 131 ~la~l~G~~~--~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~ 208 (608)
T TIGR03811 131 EFATLMGYKN--GWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEI 208 (608)
T ss_pred HHHHHhCCCC--CCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhh
Confidence 9999999985 579999999999999999999842 1
Q ss_pred ------------C-cEEEecCCCchHHHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCC
Q 011842 184 ------------D-GILYASRESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGT 244 (476)
Q Consensus 184 ------------~-~~Vl~s~~~H~S~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gt 244 (476)
. .++++++.+|||+.|+++++|+ +++.||+|++++||+++|+++|++. +..|++||+|.||
T Consensus 209 ~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGT 288 (608)
T TIGR03811 209 KAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGS 288 (608)
T ss_pred hhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence 0 1689999999999999999999 5999999999999999999999753 3345789999999
Q ss_pred CccccccCHHHHHHHH---HHhCCCCCceEEEEecCccccccc-cc-------------------------------ccC
Q 011842 245 TVKGAVDDLDLVIQTL---EESGFTQDRFYIHCDGALFGLMMP-FV-------------------------------KKA 289 (476)
Q Consensus 245 t~tG~id~l~~I~~ia---~~~g~~~~~~~lhvD~a~~g~~~~-~~-------------------------------~~~ 289 (476)
|.+|++|||++|+++| +++|+ .||+||||||||++.. +. ...
T Consensus 289 T~~GaiDpl~eI~~l~~~~~~~gl---~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~ 365 (608)
T TIGR03811 289 TEEGAVDGIDKIVALRNKLMKEGI---YFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVY 365 (608)
T ss_pred cCCcccCCHHHHHHHHHHHHHcCC---ceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHH
Confidence 9999999999999999 56776 3469999999986411 00 111
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCC---------CCcccCCCCChhHHHHHHHHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASR---------DATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~---------~~~~~~sr~~~~~l~~~~~l~ 359 (476)
..+.+.+.+|||++++|||+++|++||++++|++. .+.+...+.|++.. +.++.|||+++.++++|++++
T Consensus 366 ~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr 445 (608)
T TIGR03811 366 NAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHK 445 (608)
T ss_pred HHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHH
Confidence 23445677999999999999999999999999874 45567778898632 235789999988999999999
Q ss_pred Hh--ChhcHHHHHHHHHHHHHHHHHHHHhcC-------CeE--eecCCeeEEEEec
Q 011842 360 RK--GYKGFQKEVQKCLRNAHYLKDRLLDAG-------ISA--MLNELSSTVVFER 404 (476)
Q Consensus 360 ~~--g~~g~~~~~~~~~~~a~~l~~~L~~~g-------~~~--~~~~~~~iv~f~~ 404 (476)
.+ |.+|+.++++++++++++|.+.|++.+ +.. +.+|..++|+|+.
T Consensus 446 ~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~ 501 (608)
T TIGR03811 446 VLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVF 501 (608)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEE
Confidence 98 899999999999999999999998853 222 4567789999984
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=344.38 Aligned_cols=384 Identities=18% Similarity=0.234 Sum_probs=321.9
Q ss_pred ccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcc
Q 011842 60 SCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFI 129 (476)
Q Consensus 60 ~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~ 129 (476)
+++.--+|..+.. ..|+++++.++|++++++.+.++.+ ||.||.++.+. ++.+++++..+++..|.+|.
T Consensus 28 ~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGit-Hw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ 106 (511)
T KOG0628|consen 28 RVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGIT-HWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWA 106 (511)
T ss_pred CCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCc-ccCCCceeeEccCccchHHHHHHHHhcccccccceee
Confidence 4555566666664 7789999999999999999999997 79999998764 57899999999999999999
Q ss_pred cCccchhhHHHHHHHHHHHHHHcCCCCC-------cccEEEcCCchhHHHHHHHHHHhh-----------------CCCc
Q 011842 130 ESNYGVHSRQFEVGVLDWFARLWELENN-------EYWGYITNCGTEGNLHGILVGREV-----------------FPDG 185 (476)
Q Consensus 130 ~~~~~~~~~~le~~~~~~la~l~g~~~~-------~~~g~~t~ggt~An~~al~aa~~~-----------------~p~~ 185 (476)
++| ..++||..+.+|+++++++|.. +..|++-.++|++++.++.++|.. ..+.
T Consensus 107 ssP---a~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~l 183 (511)
T KOG0628|consen 107 SSP---ACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARL 183 (511)
T ss_pred cCc---chHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhh
Confidence 998 6899999999999999998742 457899999999999999998863 1245
Q ss_pred EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q 011842 186 ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEE 262 (476)
Q Consensus 186 ~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~ 262 (476)
++|+|+++|.|+.+++.+.|++++.++++.+..|+.+.|+++|+++ +..|++|++|.|||.+.++|+|.+|..+|++
T Consensus 184 V~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~ 263 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCRE 263 (511)
T ss_pred eEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhh
Confidence 8999999999999999999999999999999999999999999875 5689999999999999999999999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCCC--
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLASR-- 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~~-- 338 (476)
+|+ |||||+||+|...-.........+.+.+||+++++|||+++-..|+.+++++. +.+.+...+-||...
T Consensus 264 ~gl-----WLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~ 338 (511)
T KOG0628|consen 264 EGL-----WLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQ 338 (511)
T ss_pred cCE-----EEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhh
Confidence 999 99999999876554444444577888899999999999999999999999987 345556666666542
Q ss_pred -------CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCCcHHH
Q 011842 339 -------DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQDEEF 410 (476)
Q Consensus 339 -------~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~~~~~ 410 (476)
.+.+.-+|+ +.++++|..++.+|.+++++++++..++++.|.+.+.+.+.+.+.++ ....|||+..++++.
T Consensus 339 ~~~~Dyrhwqipl~rR-fRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ 417 (511)
T KOG0628|consen 339 GSAPDYRHWQIPLGRR-FRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEI 417 (511)
T ss_pred ccCCCccccccccccc-hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHH
Confidence 234556665 67999999999999999999999999999999999998776666554 568999997654433
Q ss_pred ----hhce------ee-cc---cCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 411 ----VRRW------QL-AC---QGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 411 ----~~~~------~l-~~---~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.+++ .+ ++ +.-.+|+++ ++.++.+||+.....|.+....+.+.
T Consensus 418 ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 418 NEALLNRLNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred HHHHHHHHHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 2222 22 21 234679765 78889999999999999999887654
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=301.45 Aligned_cols=307 Identities=24% Similarity=0.357 Sum_probs=246.8
Q ss_pred CCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh
Q 011842 101 GYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE 180 (476)
Q Consensus 101 g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~ 180 (476)
|++.. ..+++.+.+++...+|++...+..++ +..++|+++++|+++++|++.++..+++|+|||+||++++++++.
T Consensus 4 ~~~~~-~~~~~~~~~~~~~~~n~~~~~y~~~~---~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~ 79 (345)
T cd06450 4 GFVTT-MDPPALLLEMLTSAKNAIDFTWDESP---AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD 79 (345)
T ss_pred cccCC-CcHHHHHHHHHHHhcCCCCcccccCc---hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence 34444 33458899999999998877766555 678999999999999999973345699999999999999999875
Q ss_pred hC----------C--CcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHc---CCCCcEEEEEeeCCC
Q 011842 181 VF----------P--DGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ---NKDKPAIINVNIGTT 245 (476)
Q Consensus 181 ~~----------p--~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt 245 (476)
+. + +.+|+++..+|+++.++++.+|++++.+|+++++.+|+++|++++.+ ...++.+|++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~ 159 (345)
T cd06450 80 RARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTT 159 (345)
T ss_pred HhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccC
Confidence 31 2 45899999999999999999999999999988889999999999976 222456888899999
Q ss_pred ccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhh
Q 011842 246 VKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 325 (476)
Q Consensus 246 ~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~ 325 (476)
++|.++|+++|+++|++||+ |+|+|+||+++.++...+.........+|++++++|||+++|+++|+++++
T Consensus 160 ~tG~~~~~~~i~~~~~~~~~-----~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~---- 230 (345)
T cd06450 160 DTGAIDPLEEIADLAEKYDL-----WLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR---- 230 (345)
T ss_pred CCCCCCCHHHHHHHHHHhCC-----eEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH----
Confidence 99999999999999999999 999999999877654322211111235899999999999999999998765
Q ss_pred hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEec
Q 011842 326 NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFER 404 (476)
Q Consensus 326 ~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~ 404 (476)
.+++|++++.++..++++++++..++++++.+.|++.+...+ .++..++++|..
T Consensus 231 -------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~ 285 (345)
T cd06450 231 -------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRL 285 (345)
T ss_pred -------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEE
Confidence 578899999999999999999999999999999999754443 345678999987
Q ss_pred CCc-------HHHh----h--ceeecc----cCCEEEEEEcCC-CCHHHHHHHHHHHHH
Q 011842 405 PQD-------EEFV----R--RWQLAC----QGNIAHVVVMPN-VTIDKLDDFLNELIE 445 (476)
Q Consensus 405 ~~~-------~~~~----~--~~~l~~----~~~~lRv~~~~~-~T~edid~~~~~l~~ 445 (476)
++. .++. + .+.++. ....+|++++.. +|++|||+|+++|++
T Consensus 286 ~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 286 KPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred CCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 642 1221 2 122221 246899999865 599999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=295.14 Aligned_cols=353 Identities=25% Similarity=0.420 Sum_probs=266.9
Q ss_pred cHHHHHHHHHHHHhccccc--ccCCCCcCCcc-hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCC
Q 011842 80 YMAGVLARYRKTLMERTKH--HLGYPYNLDFD-YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEN 156 (476)
Q Consensus 80 ~~~~il~~~~~~~~~~~~~--~~g~p~~~~~~-~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~ 156 (476)
+.+++++.+++........ .+|.- ...+ +.....+..+...+.+.+... .+..++++++++++++++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~la~~~g~~~ 76 (371)
T PRK13520 3 SEEEILEELEEYRSEDLKYERILSSM--CTEPHPIARKAHEMFLETNLGDPGLF----PGTAKLEEEAVEMLGELLHLPD 76 (371)
T ss_pred CHHHHHHHHHHHHhcCCCHHHeeeee--ecCchHHHHHHHHHHHhcCCCCcccC----ccHHHHHHHHHHHHHHHhCCCC
Confidence 4678888888877665431 12210 1111 233333333333343433211 1456888999999999999875
Q ss_pred CcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCC
Q 011842 157 NEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK 234 (476)
Q Consensus 157 ~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~ 234 (476)
+ .+++|+|||++|..++.+++.. .+++.|++++.+|+++.++++.+|++++.+|.++++.+|+++|+++|.+++.
T Consensus 77 ~--~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~- 153 (371)
T PRK13520 77 A--YGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNTI- 153 (371)
T ss_pred C--CeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCCE-
Confidence 3 4899999999999998887663 2578999999999999999999999999999988889999999999986643
Q ss_pred cEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCCC
Q 011842 235 PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPM 313 (476)
Q Consensus 235 p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~ 313 (476)
.|++++++|++|.+.|+++|.++|++||+ ++|+|++|+++..+.......++.. ..+|++++++|||+++|.
T Consensus 154 --~vi~~~~~~~tG~~~~l~~I~~l~~~~g~-----~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~ 226 (371)
T PRK13520 154 --GIVGIAGTTELGQVDPIPELSKIALENGI-----FLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPI 226 (371)
T ss_pred --EEEEEcCCcCCcccCCHHHHHHHHHHcCC-----CEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccC
Confidence 56677889999999999999999999999 9999999998776544432224433 358999999999999999
Q ss_pred CceeEEeehh-hhhhhcCCccccCCC-CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 011842 314 PCGVQITRME-HINVLSSNVEYLASR-DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 314 ~~G~l~~~~~-~~~~l~~~~~yl~~~-~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~ 391 (476)
++|+++++++ +++.+.....|+... .....|++++...+++|++++.++.+++++++++..+++++|.+.|++.|+..
T Consensus 227 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~ 306 (371)
T PRK13520 227 PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEP 306 (371)
T ss_pred CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 9999888665 566554344555432 22346788777788899999999888999999999999999999999988764
Q ss_pred eecCCeeEEEEecCCcHHHh-----hceeec-cc-CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 392 MLNELSSTVVFERPQDEEFV-----RRWQLA-CQ-GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 392 ~~~~~~~iv~f~~~~~~~~~-----~~~~l~-~~-~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+.++..++++|..++..++. +++.+. +. ...+|+++++++|++||++|+++|+++.+
T Consensus 307 ~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 307 VIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred ecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 55666788888876544332 233343 22 46799999999999999999999988654
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=277.22 Aligned_cols=320 Identities=16% Similarity=0.166 Sum_probs=247.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh----CCCc
Q 011842 110 YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV----FPDG 185 (476)
Q Consensus 110 ~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~----~p~~ 185 (476)
+..+..++.+....+|++...+.+|..+.++-++.++.+++++|+++ ..++||+||||+|++++..+... ..+.
T Consensus 15 ~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~--~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~ 92 (386)
T COG1104 15 PEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADP--EEIIFTSGATESNNLAIKGAALAYRNAQKGK 92 (386)
T ss_pred HHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCC--CeEEEecCCcHHHHHHHHhhHHhhhcccCCC
Confidence 46666666666666777776777788889999999999999999987 45999999999999999874322 2467
Q ss_pred EEEecCCCchHHHHHHHHc---CCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q 011842 186 ILYASRESHYSVFKAARMY---RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE 262 (476)
Q Consensus 186 ~Vl~s~~~H~S~~~~~~~~---G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~ 262 (476)
.||++..+|.++...++.+ |.++.++|++.+|.+|+++|+++|+++|. +|.+-+.+|.+|+++||++|+++|++
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~---LVSim~aNnE~G~IQpI~ei~~i~k~ 169 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTI---LVSIMHANNETGTIQPIAEIGEICKE 169 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCce---EEEEEecccCeeecccHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999998874 89999999999999999999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCC-C
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD-A 340 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~-~ 340 (476)
+++ ++|+|++|+.+.+| ++..+ .+|++++|+||+.| |.|+|++++|+... ..+...++.. .
T Consensus 170 ~~i-----~fHvDAvQa~Gkip-------i~~~~~~vD~ls~SaHK~~G-pkGiGaLyv~~~~~----~~p~i~GGgQE~ 232 (386)
T COG1104 170 RGI-----LFHVDAVQAVGKIP-------IDLEELGVDLLSFSAHKFGG-PKGIGALYVRPGVR----LEPLIHGGGQER 232 (386)
T ss_pred cCC-----eEEEehhhhcCcee-------ccccccCcceEEeehhhccC-CCceEEEEECCCCc----cCceeccCcCCC
Confidence 999 99999999988887 66666 49999999999998 99999999976531 1112222211 1
Q ss_pred cc-cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC----CeeEEEEecCC--cHHHhh
Q 011842 341 TI-MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE----LSSTVVFERPQ--DEEFVR 412 (476)
Q Consensus 341 ~~-~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~----~~~iv~f~~~~--~~~~~~ 412 (476)
.. .||-+.....++..+++. ..+.+.....+...++++|.+.|.+. +...+... ..+++.|..|. .+.+..
T Consensus 233 g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~ 311 (386)
T COG1104 233 GLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLL 311 (386)
T ss_pred CCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHH
Confidence 11 233333333334444433 24667788889999999999999986 54444322 24666676653 333322
Q ss_pred -----ceeec----cc--------------------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 413 -----RWQLA----CQ--------------------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 413 -----~~~l~----~~--------------------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++.++ |. ...+|+++...+|++|||+++++|+++.+++.+
T Consensus 312 ~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 312 ALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred hccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 22221 11 267999999999999999999999999988764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=284.07 Aligned_cols=350 Identities=27% Similarity=0.425 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHhcccccccCCCCcCC----cchHH-HHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCC
Q 011842 81 MAGVLARYRKTLMERTKHHLGYPYNLD----FDYGA-LAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 155 (476)
Q Consensus 81 ~~~il~~~~~~~~~~~~~~~g~p~~~~----~~~~~-l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~ 155 (476)
-+++++++.++...+.+. +.++... .+... ...+..+...+.+.... .+ +..++++++++++++++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~la~~~g~~ 75 (373)
T TIGR03812 2 EEEVLEELKEYRSEDLKY--SDGRILGSMCTNPHPIAVKAYDMFIETNLGDPGL-FP---GTKKIEEEVVGSLGNLLHLP 75 (373)
T ss_pred HHHHHHHHHHHHhcCCCC--CCCcEEEEEeCCchHHHHHHHHHHhhcCCCCccc-Cc---cHHHHHHHHHHHHHHHhCCC
Confidence 367888888865554442 2233111 11222 23333332233333221 11 45688899999999999997
Q ss_pred CCcccEEEcCCchhHHHHHHHHHHhh----CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC
Q 011842 156 NNEYWGYITNCGTEGNLHGILVGREV----FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN 231 (476)
Q Consensus 156 ~~~~~g~~t~ggt~An~~al~aa~~~----~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~ 231 (476)
++ .+++++|++++++.++.+++.. .+++.|++++.+|+++.++++..|++++.+++++++.+|+++|+++++++
T Consensus 76 ~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~~ 153 (373)
T TIGR03812 76 DA--YGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDDN 153 (373)
T ss_pred CC--CeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhhC
Confidence 53 3889999999999888776532 25689999999999999999999999999999888999999999999876
Q ss_pred CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc---cCCCCCCcc-cccEEEEcCCC
Q 011842 232 KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK---KAPKVSFKK-PIGSVSVSGHK 307 (476)
Q Consensus 232 ~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~---~~~~~~~~~-~~Dsi~~s~hK 307 (476)
+ ..+++..++|++|.++|+++|.++|+++|+ |+|+|+||+++..+... ....+++.. .+|++++++||
T Consensus 154 ~---~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~-----~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K 225 (373)
T TIGR03812 154 T---IGIVGIAGTTELGQIDDIEELSKIALENGI-----YLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHK 225 (373)
T ss_pred c---EEEEEECCCCCCCccCCHHHHHHHHHHcCC-----eEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccc
Confidence 5 234444588999999999999999999999 99999999877654321 112244433 48999999999
Q ss_pred CCCCCCCceeEEee-hhhhhhhcCCccccCCC-CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHH
Q 011842 308 FVGCPMPCGVQITR-MEHINVLSSNVEYLASR-DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLL 385 (476)
Q Consensus 308 ~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~-~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~ 385 (476)
|+.+|.++|+++++ +++++.+.....|+... .....|+++....++++++++.++.+++++..++..+++++|++.|+
T Consensus 226 ~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~ 305 (373)
T TIGR03812 226 MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELK 305 (373)
T ss_pred cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99889999877764 45666554444565432 23345788777788899999999889999999999999999999999
Q ss_pred hcCCeEeecCCeeEEEEecCCcHHHh-----hceeecc--cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 386 DAGISAMLNELSSTVVFERPQDEEFV-----RRWQLAC--QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 386 ~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~--~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.|+..+.++.+++++|..++..++. +++.+.. ....+|++++.++|++|+|+|+++|+++
T Consensus 306 ~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 306 KIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREHIEEFLEDLKEI 373 (373)
T ss_pred hCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence 99876666677888888876543333 2344432 3468999999999999999999999763
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=284.61 Aligned_cols=299 Identities=16% Similarity=0.125 Sum_probs=241.1
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchH----HHHHHHHcCCeE
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYS----VFKAARMYRMEC 208 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v 208 (476)
+...++.++++++.+++++|.++ ...++||.|.|+|+.....+... ..+||+|+++..+|.| |...++..|+++
T Consensus 61 ~~~~t~~~e~aRe~va~~~~a~~-~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v 139 (405)
T COG0520 61 AEEATDLYEAAREAVARFLNADS-SDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKV 139 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC-CCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEE
Confidence 33567899999999999999985 34599999999998877766532 3488999999999987 567777779999
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+.+|.+++|.+|.++++..+.++|+ +|++++.+|.+|.+.|+++|+++||++|+ |++||++|+.+.+|
T Consensus 140 ~~i~~~~~g~~~~~~~~~~i~~~Tk---lvais~vSn~tG~~~pv~~I~~la~~~ga-----~v~VDaaq~~~h~~---- 207 (405)
T COG0520 140 RVIPLDDDGLLDLDALEKLITPKTK---LVALSHVSNVTGTVNPVKEIAELAHEHGA-----LVLVDAAQAAGHLP---- 207 (405)
T ss_pred EEEecCCCCCcCHHHHHHhcCCCce---EEEEECccccccccchHHHHHHHHHHcCC-----EEEEECccccCccC----
Confidence 9999998999999999999888887 99999999999999999999999999999 99999999998887
Q ss_pred CCCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC------CccccCC---------CCCcccCCCCChhHH
Q 011842 289 APKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS------NVEYLAS---------RDATIMGSRNGHAPI 352 (476)
Q Consensus 289 ~~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~------~~~yl~~---------~~~~~~~sr~~~~~l 352 (476)
+++.+. +|++.+|+|||+++|.|+|+|++|+++++.+.. ...+... ......|+.+....+
T Consensus 208 ---idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i 284 (405)
T COG0520 208 ---IDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAI 284 (405)
T ss_pred ---CCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHH
Confidence 777664 999999999999999999999999998776621 0111111 011234666666678
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cC---CeeEEEEecCC--cHHHh-----hceeec----
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NE---LSSTVVFERPQ--DEEFV-----RRWQLA---- 417 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~---~~~iv~f~~~~--~~~~~-----~~~~l~---- 417 (476)
.+.++++++...|++++.++.+++++++.++|++.+...+. ++ ...+++|..+. +.++. ++..+.
T Consensus 285 ~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ 364 (405)
T COG0520 285 GLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHH 364 (405)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccc
Confidence 88899999988899999999999999999999998755544 33 36889998764 23222 122221
Q ss_pred cc---------CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 418 CQ---------GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 418 ~~---------~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|. ...+|+|++.++|+||||+|+++|+++.+
T Consensus 365 ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 365 CAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred cccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 21 13399999999999999999999998754
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=259.24 Aligned_cols=375 Identities=19% Similarity=0.232 Sum_probs=290.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCc--chHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDF--DYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFA 149 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~--~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la 149 (476)
..+|++|.+.+++++.+.+.+....+..+| +..... -......++...+|.. +.....-++ ..++++.++.++++
T Consensus 54 ~~lP~~gl~~d~v~~~i~~~~~ld~~~~~~-~vS~~v~~~~~~~~~l~~~~~~k~-N~l~~d~fp-~~~~~e~~~Vnm~~ 130 (491)
T KOG1383|consen 54 FTLPSKGLPKDAVLELINDELMLDGNPRLG-LASGVVYWGEPELDKLIMEAYNKF-NPLHPDEFP-VVRKLEAECVNMIA 130 (491)
T ss_pred ecCCCCCCCHHHHHHHHHHHhccCCCcccC-eeeEEEecCCcchhhHHHHHHhhc-CccCccccc-hhHHHHHHHHHHHH
Confidence 378999999999999998887655432222 111110 0233444554444422 111112222 57899999999999
Q ss_pred HHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CCCccCHH
Q 011842 150 RLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVFKAARMYRMECVKVDCL-ISGEIDCA 222 (476)
Q Consensus 150 ~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~g~~D~~ 222 (476)
.|++.+.+ ..|..|+|||+|.+.+....+++. ..+.++++...|.++.++++.++++++.||++ .+.++|+.
T Consensus 131 ~L~~~~~~-~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~ 209 (491)
T KOG1383|consen 131 NLFNAPSD-SCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPG 209 (491)
T ss_pred HHhcCCcc-ccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHH
Confidence 99999954 678899999999888777765531 24678999999999999999999999999998 57899999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-hCCCCCceEEEEecCccccccc-ccccCCCCCCccc-cc
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMP-FVKKAPKVSFKKP-IG 299 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~-~g~~~~~~~lhvD~a~~g~~~~-~~~~~~~~~~~~~-~D 299 (476)
.+.+.+.+++. .++...|++++|.++|+++|.++.-+ +++ .+|||++.|+++.| +......+++... +-
T Consensus 210 k~~~~i~eNti---~lv~~~~~~p~G~~e~ve~l~~l~~e~w~i-----piHvDa~~GgFi~p~~~~~~~~fdFr~p~V~ 281 (491)
T KOG1383|consen 210 KVVRMIDENTI---MLVGSLPNFPTGEIEDVEKLADLLLEIWDI-----PIHVDACLGGFINPAGYLNEEEFDFRVPGVT 281 (491)
T ss_pred HHHHHhccceE---EEEEEcCCCCccchhhHHHHHHHHHHHhCC-----ceeecccCccccccccccCccccccCCCCce
Confidence 99999999985 88899999999999999999999999 999 99999999999998 3333446888765 99
Q ss_pred EEEEcCCCCCCCCCCceeEEeehh--hhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 300 SVSVSGHKFVGCPMPCGVQITRME--HINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 300 si~~s~hK~l~~p~~~G~l~~~~~--~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
|++.+.||+..+|.|+|+++.|++ +...+.....|+++- ..|+.|||++...+.+|+++-.+|.+||.+..+++.+
T Consensus 282 Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive 361 (491)
T KOG1383|consen 282 SISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVE 361 (491)
T ss_pred eEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999987 335566777888763 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CeEeecCCeeEEEEecCCcH-----HH--hhceeeccc--CCEEEEEEcCCCCHHH-HHHHHHHHH
Q 011842 376 NAHYLKDRLLDAG-ISAMLNELSSTVVFERPQDE-----EF--VRRWQLACQ--GNIAHVVVMPNVTIDK-LDDFLNELI 444 (476)
Q Consensus 376 ~a~~l~~~L~~~g-~~~~~~~~~~iv~f~~~~~~-----~~--~~~~~l~~~--~~~lRv~~~~~~T~ed-id~~~~~l~ 444 (476)
.++.|++.|++.+ +..+.+|...++.|....-+ +. ..+|.++.- ...+++++...++.++ .|+|+.+|+
T Consensus 362 ~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~ 441 (491)
T KOG1383|consen 362 TARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPAAIHICVTRVHAREDVADRFVADIR 441 (491)
T ss_pred HHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccCCCCceEEEEEeeeccHHHHHHHHHHHH
Confidence 9999999999964 45555666666666433211 12 246777532 3467777655555444 699999999
Q ss_pred HHHHHHHhcCCCCC
Q 011842 445 ENRSTWYEDGKRQP 458 (476)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (476)
++..++...+..++
T Consensus 442 ~~~~el~~~p~~~~ 455 (491)
T KOG1383|consen 442 KVVEELKSLPESKT 455 (491)
T ss_pred HHHHHHHhCCCccc
Confidence 99999987665444
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=256.73 Aligned_cols=281 Identities=16% Similarity=0.093 Sum_probs=214.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHHHH---HcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAAR---MYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~~~---~~G~~v~~ 210 (476)
...++.+++++.+++++|.+++ .+++|+|+|+++++++..+... .+++.|+++..+|+|+..... ..|++++.
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~--~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~ 117 (364)
T PLN02651 40 ESEDAVEKARAQVAALIGADPK--EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTY 117 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEE
Confidence 3457778889999999999754 4899999999999988776432 478899999999998755443 45889999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.++++.+|+++|+++|+++++ +|+++++++++|.+.|+++|+++|++||+ ++|||++|+.+..+
T Consensus 118 v~~~~~~~~d~~~l~~~i~~~t~---lv~v~~~~n~tG~~~~l~~I~~~~~~~g~-----~~~vD~a~~~g~~~------ 183 (364)
T PLN02651 118 LPVKSDGLVDLDELAAAIRPDTA---LVSVMAVNNEIGVIQPVEEIGELCREKKV-----LFHTDAAQAVGKIP------ 183 (364)
T ss_pred EccCCCCcCCHHHHHHhcCCCcE---EEEEECCCCCceecccHHHHHHHHHHcCC-----EEEEEcchhhCCcc------
Confidence 99988899999999999987664 88899999999999999999999999999 99999999987776
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC--CCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
+++.+ .+|++++++||| ++|.|+|+++++++....+... +... ......|+.+....+++.++++.+.. +.+
T Consensus 184 -~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~l~p~--~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~-~~~ 258 (364)
T PLN02651 184 -VDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPRVRLEPL--MSGGGQERGRRSGTENTPLVVGLGAACELAMK-EMD 258 (364)
T ss_pred -cCcccCCCCEEEechhhh-CCCCceEEEEEcCCCCCCCCcc--ccCCCccCCccCCCccHHHHHHHHHHHHHHHH-hHH
Confidence 45544 389999999998 5699999999998765443211 1111 11123567766666777788887753 458
Q ss_pred HHHHHHHHHHHHHHHHHHh-c-CCeEeec--CC---eeEEEEecCC--cHHHhhc---eeec----c-------------
Q 011842 368 KEVQKCLRNAHYLKDRLLD-A-GISAMLN--EL---SSTVVFERPQ--DEEFVRR---WQLA----C------------- 418 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~-~-g~~~~~~--~~---~~iv~f~~~~--~~~~~~~---~~l~----~------------- 418 (476)
++.++..++++++.+.|++ . ++..+.+ +. .+++.|..++ ..++.+. +.+. |
T Consensus 259 ~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g~~c~~~~~~~~~~~~~ 338 (364)
T PLN02651 259 YDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRA 338 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEchhhcCCCCCCcCHHHHH
Confidence 8889999999999999986 3 5544433 11 3588887663 2333322 2221 1
Q ss_pred -------cCCEEEEEEcCCCCHHHHH
Q 011842 419 -------QGNIAHVVVMPNVTIDKLD 437 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid 437 (476)
..+.+|+|+++++|++|||
T Consensus 339 ~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 339 LGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCChHHhCceEEEEcCCCCCHHHcC
Confidence 1368999999999999986
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=252.60 Aligned_cols=296 Identities=17% Similarity=0.116 Sum_probs=225.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchH----HHHHHHHcCCeEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYS----VFKAARMYRMECVK 210 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~ 210 (476)
..+...++++.+++++|.+. ...+++|+|+|+++..++.+... ..+++.|++++++|+| +...++..|++++.
T Consensus 58 ~~~~~~~~r~~la~~~g~~~-~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 136 (398)
T TIGR03392 58 LTARYELARQQVARFLNAPD-AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVK 136 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEE
Confidence 34667788899999999852 23589999999999988877631 2488999999999987 44567888999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+|+++++.+|+++|++++.++++ +|+++++++++|.+.|+++|+++|++||+ ++++|++|+.+..+
T Consensus 137 v~~~~~~~~~~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~~~~i~~~~~~~~~-----~~ivD~a~~~~~~~------ 202 (398)
T TIGR03392 137 LPIGADLLPDIRQLPELLTPRTR---ILALGQMSNVTGGCPDLARAITLAHQYGA-----VVVVDGAQGVVHGP------ 202 (398)
T ss_pred EecCCCCCcCHHHHHHHhccCce---EEEEECccccccccCCHHHHHHHHHHcCC-----EEEEEhhhhcCCCC------
Confidence 99988888999999999977664 88889999999999999999999999999 99999999765544
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCcc------------ccCCCC-Ccc-cCCCCChhHHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE------------YLASRD-ATI-MGSRNGHAPIFLW 355 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~------------yl~~~~-~~~-~~sr~~~~~l~~~ 355 (476)
++... .+|++++|+||+++ |.|+|++++++++++.+..... |..... ..+ .|+.+....+++.
T Consensus 203 -~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~ 280 (398)
T TIGR03392 203 -PDVQALDIDFYAFSGHKLYG-PTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLS 280 (398)
T ss_pred -CChhhcCCCEEEEecccccC-CCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHH
Confidence 23333 38999999999665 8899999999887665522110 000000 111 3566555667788
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC--cHHHh-----hceeec----cc----
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ--DEEFV-----RRWQLA----CQ---- 419 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~----~~---- 419 (476)
++++.+...|++++.++..++++++.+.|++. |+....++..+++.|..++ ..++. +++.+. |.
T Consensus 281 ~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 360 (398)
T TIGR03392 281 AALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLM 360 (398)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHH
Confidence 88888767788888899999999999999987 4443334556788877653 23332 233332 11
Q ss_pred -----CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 420 -----GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 420 -----~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+.+|++++.++|++|||+|+++|+++.+.
T Consensus 361 ~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 361 AALGVSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred HHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=253.02 Aligned_cols=292 Identities=15% Similarity=0.136 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHHH---HcCCeEEEEe
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAAR---MYRMECVKVD 212 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~~---~~G~~v~~v~ 212 (476)
.+..+++++.+++++|.+++ .+++|+|+|+++..++.++.. ..+++.|+++..+|.|+...++ ..|++++.++
T Consensus 46 ~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~ 123 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSR--EIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLP 123 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEc
Confidence 45677888999999998754 499999999999988877642 2478999999999999876553 4599999999
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+++++.+|+++|++++.++++ +|+++++++++|.+.|+++|.++|+++|+ ++|+|++|+.+..+ +
T Consensus 124 ~~~~~~~d~~~l~~~l~~~~~---lv~v~~~~n~tG~~~~~~~I~~l~~~~g~-----~livD~a~a~g~~~-------~ 188 (402)
T TIGR02006 124 PKSNGLIDLEELKAAIRDDTI---LVSIMHVNNEIGVIQDIAAIGEICRERKV-----FFHVDAAQSVGKIP-------I 188 (402)
T ss_pred cCCCCcCCHHHHHHhcCCCCE---EEEEECCCcCceecccHHHHHHHHHHcCC-----EEEEEcchhcCCcc-------c
Confidence 988899999999999976654 88889999999999999999999999999 99999999877665 3
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
++.+ .+|++++++||+++ |.|+|+++++++....+.. .+.... .....++.+....+++..+++.+. ++++++
T Consensus 189 ~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~--~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~ 264 (402)
T TIGR02006 189 NVNELKVDLMSISGHKIYG-PKGIGALYVRRKPRVRLEA--LIHGGGHERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQD 264 (402)
T ss_pred CccccCCCEEEEehhhhcC-CCceEEEEEccCCCCCCCc--eecCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHH
Confidence 4433 49999999999765 9999999999764332211 111100 011234554444455556666653 467888
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeec-C--C---eeEEEEecCCcHHHhh---ceeec----c------------------
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLN-E--L---SSTVVFERPQDEEFVR---RWQLA----C------------------ 418 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~-~--~---~~iv~f~~~~~~~~~~---~~~l~----~------------------ 418 (476)
.++..++++++.+.|++.+...+.. + . ..++.|...+.+.+.. +..+. |
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~lg~~~ 344 (402)
T TIGR02006 265 TAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGIND 344 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcCCEEEechhhcCCCCCCccHHHHHcCCCh
Confidence 8999999999999998865433321 1 1 1246666323233322 22211 1
Q ss_pred --cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 --~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|+++++++|++|||+|+++|+++.+.+
T Consensus 345 ~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 345 ELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999999999999999999999988765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=251.54 Aligned_cols=297 Identities=18% Similarity=0.128 Sum_probs=226.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchH----HHHHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYS----VFKAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~ 209 (476)
...+..+++++.+++++|.+. ...+++|+|+|+++..++.+... ..||+.|++++++|+| +...++..|++++
T Consensus 60 ~~~~~~~~~r~~la~~~g~~~-~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~ 138 (401)
T PRK10874 60 RLTARYEAAREQVAQLLNAPD-AKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVV 138 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-CCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEE
Confidence 445777888999999999942 23589999999999888777632 2488999999999976 4566788899999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|.+.++.+|+++|++.+.++++ +|++++++++||.+.|+++|+++|+++|+ ++++|++|+.+..+
T Consensus 139 ~v~~~~~~~~d~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~~~~i~~l~~~~g~-----~~ivD~a~~~g~~~----- 205 (401)
T PRK10874 139 KLPLGADRLPDVDLLPELITPRTR---ILALGQMSNVTGGCPDLARAITLAHQAGM-----VVMVDGAQGAVHFP----- 205 (401)
T ss_pred EEecCCCCcCCHHHHHHhcCcCcE---EEEEeCCcccccCcCCHHHHHHHHHHcCC-----EEEEECCccccccc-----
Confidence 999988889999999999977665 88899999999999999999999999999 99999999765554
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc---------c---ccCCC-CCc-ccCCCCChhHHHH
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV---------E---YLASR-DAT-IMGSRNGHAPIFL 354 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~---------~---yl~~~-~~~-~~~sr~~~~~l~~ 354 (476)
++... .+|++++++||++ +|.|+|+++++++.++.+.... . |-... ... ..|+.+....+++
T Consensus 206 --~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al 282 (401)
T PRK10874 206 --ADVQALDIDFYAFSGHKLY-GPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGL 282 (401)
T ss_pred --CCchhcCCCEEEEeccccc-CCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHH
Confidence 23322 3899999999965 4889999999988766543211 0 00000 011 1355555566778
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC--cHHHh-----hceeec----cc---
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ--DEEFV-----RRWQLA----CQ--- 419 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~----~~--- 419 (476)
.++++.+...++.+..++..++++++.+.|++. |+....++.+++++|..++ ..++. +++.+. |.
T Consensus 283 ~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~ 362 (401)
T PRK10874 283 SAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPL 362 (401)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHH
Confidence 888888777788888899999999999999987 5544444566788887653 22222 223331 11
Q ss_pred ------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 420 ------GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 420 ------~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+.+|++++.++|++|||+|+++|+++.+.
T Consensus 363 ~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 363 LAALGVTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999998764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=247.74 Aligned_cols=294 Identities=15% Similarity=0.129 Sum_probs=216.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHHHHHHH---HcCCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-FPDGILYASRESHYSVFKAAR---MYRMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~~~~~~---~~G~~v~~v 211 (476)
...++.+++++++++++|.+++ ++++|+|+|+++..++.++... .++++|+++..+|+++..... ..|++++.+
T Consensus 39 ~~~~~~~~~r~~la~~~g~~~~--~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v 116 (379)
T TIGR03402 39 EVGKAVEEAREQVAKLLGAEPD--EIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYL 116 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEE
Confidence 3457778899999999999753 5999999999999998876532 256899999999998765443 359999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
|.+.+|.+|+++|++++.++++ +++++++++++|.+.|+++|.++|++||+ ++|+|++|+.+..+
T Consensus 117 ~~~~~g~~~~~~l~~~i~~~~~---lv~i~~~~n~tG~~~~~~~I~~l~~~~g~-----~vivD~~~~~g~~~------- 181 (379)
T TIGR03402 117 PVDEEGRLDLEELRAAITDDTA---LVSVMWANNETGTIFPIEEIGEIAKERGA-----LFHTDAVQAVGKIP------- 181 (379)
T ss_pred ccCCCCcCCHHHHHHhcCCCcE---EEEEEcccCCeeecccHHHHHHHHHHcCC-----EEEEECcccccccc-------
Confidence 9988899999999999976654 88888999999999999999999999999 99999999876554
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
++..+ .+|++++++|| +++|.|+|+++++++.. + .+.+.... ...-.++.+....+++.++++.. .+.+++
T Consensus 182 ~~~~~~~~D~~~~s~~K-~~gp~G~g~l~v~~~~~--~--~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~ 255 (379)
T TIGR03402 182 IDLKEMNIDMLSLSGHK-LHGPKGVGALYIRKGTR--F--RPLLRGGHQERGRRAGTENVPGIVGLGKAAELA-TEHLEE 255 (379)
T ss_pred cCcccCCCCEEEEcHHH-cCCCCceEEEEECCCCC--C--CCcccCCccCCCcCCCCccHHHHHHHHHHHHHH-HHhHHH
Confidence 44444 49999999999 56699999999987631 1 11111110 11123444444445555666554 346777
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCeEeecC-C---eeEEEEecC--CcHHHhh-----ceeec----c--------------
Q 011842 369 EVQKCLRNAHYLKDRLLD-AGISAMLNE-L---SSTVVFERP--QDEEFVR-----RWQLA----C-------------- 418 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~-~g~~~~~~~-~---~~iv~f~~~--~~~~~~~-----~~~l~----~-------------- 418 (476)
+.++..++++++++.|++ .+...+..+ . +.++.|..+ +..++.. +..+. |
T Consensus 256 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~l 335 (379)
T TIGR03402 256 ENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAM 335 (379)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHc
Confidence 788899999999999985 544344332 1 235555433 3333332 22221 1
Q ss_pred ------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 ------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 ------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+.+|++++.++|++|||++++.|+++.+++.+
T Consensus 336 g~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 336 GVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred CCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0257999999999999999999999999877553
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=251.26 Aligned_cols=295 Identities=14% Similarity=0.071 Sum_probs=223.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH--hhCCCcEEEecCCCchHH----HHHHHHcCCeEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR--EVFPDGILYASRESHYSV----FKAARMYRMECVK 210 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~--~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~ 210 (476)
..+..+++++.+++++|..+ +.++++|+|+|+++..++.+.. ...+++.|++++.+|.+. ...++..|++++.
T Consensus 65 ~~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 143 (406)
T PRK09295 65 ATEKMENVRKQAALFINARS-AEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_pred HHHHHHHHHHHHHHHcCcCC-CCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence 45667778899999999842 2359999999999888776642 224889999999999763 5566778999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+.++.+|+++|++++.++++ +|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.+..+
T Consensus 144 v~~~~~~~~d~~~l~~~i~~~t~---lv~l~~~~n~tG~~~~~~~i~~~~~~~~~-----~vivD~a~~~g~~~------ 209 (406)
T PRK09295 144 IPLNPDGTLQLETLPALFDERTR---LLAITHVSNVLGTENPLAEMIALAHQHGA-----KVLVDGAQAVMHHP------ 209 (406)
T ss_pred EecCCCCCCCHHHHHHhcCCCcE---EEEEecchhcccccCCHHHHHHHHHHcCC-----EEEEEcccccCccc------
Confidence 99988899999999999976654 88899999999999999999999999999 99999999876554
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc------ccc-------CCC--CCcccCCCCChhHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV------EYL-------ASR--DATIMGSRNGHAPIFL 354 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~------~yl-------~~~--~~~~~~sr~~~~~l~~ 354 (476)
+++.+ .+|++++|+||+++ |.|+|++++++++++.+.... .+. ... ..-..|+++....+++
T Consensus 210 -~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l 287 (406)
T PRK09295 210 -VDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGL 287 (406)
T ss_pred -cCchhcCCCEEEeehhhccC-CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHH
Confidence 44433 38999999999554 889999999988765442100 000 000 0112456666666778
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--CeeEEEEecCC--cHHHh---h--ceeec----cc--
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSSTVVFERPQ--DEEFV---R--RWQLA----CQ-- 419 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~iv~f~~~~--~~~~~---~--~~~l~----~~-- 419 (476)
+.+++.+...|++++.++..++++++.+.|++.+...+..+ ..+++.|..+. ..++. . ++.+. |.
T Consensus 288 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~ 367 (406)
T PRK09295 288 GAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP 367 (406)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHH
Confidence 88888887778899999999999999999998754344333 25788887663 22222 1 22231 11
Q ss_pred -------CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 420 -------GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 420 -------~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+.+|+|++.++|++|||+|+++|+++.+
T Consensus 368 ~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 368 LMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 24799999999999999999999998754
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-28 Score=248.58 Aligned_cols=296 Identities=15% Similarity=0.094 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHH----HHHHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSV----FKAARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v 211 (476)
.+..+++++.+++++|.+.. ..+++|+|+|+++..++.+... ..+++.|++++.+|.|. ...++..|++++.+
T Consensus 61 ~~~~~~~r~~ia~~~~~~~~-~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v 139 (403)
T TIGR01979 61 TEAYEAVREKVAKFINAASD-EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFI 139 (403)
T ss_pred HHHHHHHHHHHHHHhCcCCC-CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEE
Confidence 45666788889999999732 3599999999998877765421 24789999999999874 45667789999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+++++|.+|+++|++++.++++ +|+++++++++|.+.|+++|.++|++||+ ++|+|++|+.+..+
T Consensus 140 ~~~~~~~~~~~~l~~~i~~~~~---lv~~~~~~~~tG~~~~~~~i~~~~~~~~~-----~~ivD~a~~~g~~~------- 204 (403)
T TIGR01979 140 PLDDDGTLDLDDLEKLLTEKTK---LVAITHVSNVLGTVNPVEEIAKLAHQVGA-----KVLVDGAQAVPHMP------- 204 (403)
T ss_pred ecCCCCCCCHHHHHHHhccCCe---EEEEEcccccccccCCHHHHHHHHHHcCC-----EEEEEchhhcCccc-------
Confidence 9998899999999999976554 88899999999999999999999999999 99999999876554
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc------ccc-C-C-----CCCcc-cCCCCChhHHHHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV------EYL-A-S-----RDATI-MGSRNGHAPIFLWY 356 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~------~yl-~-~-----~~~~~-~~sr~~~~~l~~~~ 356 (476)
+++.+ .+|+++.++||+++ |.|+|++++++++++.+.... .+. . . ....+ .++++....++++.
T Consensus 205 ~~~~~~~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 283 (403)
T TIGR01979 205 VDVQALDCDFYVFSGHKMYG-PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGA 283 (403)
T ss_pred cCccccCCCEEEEecccccC-CCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHH
Confidence 33333 38999999999875 889999999987665542110 000 0 0 00011 24555455667778
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cC----CeeEEEEecCC--cHHHhh-----ceeecc------
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NE----LSSTVVFERPQ--DEEFVR-----RWQLAC------ 418 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~----~~~iv~f~~~~--~~~~~~-----~~~l~~------ 418 (476)
+++.+...|++++.++..++++++.+.|++.+...+. ++ .+++++|..++ ..++.+ ++.+..
T Consensus 284 al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~ 363 (403)
T TIGR01979 284 AIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQ 363 (403)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhH
Confidence 8877766688899999999999999999987433343 32 25788887653 222221 222211
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|++++.++|++||++|+++|+++.+.+
T Consensus 364 ~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 364 PLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 13579999999999999999999999887654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=244.84 Aligned_cols=290 Identities=18% Similarity=0.143 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDC 213 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~ 213 (476)
.....++++++++++|.+.. ..+++|+|+|+++..++.+... +++.|+++..+|.++. ..++..|++++.++.
T Consensus 43 ~~~~~~~~~~la~~~~~~~~-~~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (376)
T TIGR01977 43 SREVEETRQLLAKLFNAPSS-AHVVFTNNATTALNIALKGLLK--EGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC 119 (376)
T ss_pred HHHHHHHHHHHHHHhCcCCC-CeEEEeCCHHHHHHHHHHhccC--CCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence 46677788899999998643 3589999999999888777443 8999999999998864 455666999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
++++.+|+++|++++.+++ .+|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.+..+ ++
T Consensus 120 ~~~~~~d~~~l~~~~~~~~---~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~-----~livD~a~~~g~~~-------~~ 184 (376)
T TIGR01977 120 DNEGLISPERIKRAIKTNT---KLIVVSHASNVTGTILPIEEIGELAQENGI-----FFILDAAQTAGVIP-------ID 184 (376)
T ss_pred CCCCCcCHHHHHHhcCCCC---eEEEEECCCCCccccCCHHHHHHHHHHcCC-----EEEEEhhhccCccC-------CC
Confidence 8888999999999996554 488899999999999999999999999999 99999999877665 33
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCC-----ccccCCC----CCcccCCCCChhHHHHHHHHHHhC
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSN-----VEYLASR----DATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~-----~~yl~~~----~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
+.. .+|++++++|||+++|.++|+++++++. ++.+... ..+.... ..-..++.+....++++.+++.+.
T Consensus 185 ~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~ 264 (376)
T TIGR01977 185 MTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIE 264 (376)
T ss_pred chhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHH
Confidence 333 4999999999999999999999998764 2222110 0011000 001124555555667778888888
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-----CeeEEEEecCC-c-HHHh----h--ceeec----c-------
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-----LSSTVVFERPQ-D-EEFV----R--RWQLA----C------- 418 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~iv~f~~~~-~-~~~~----~--~~~l~----~------- 418 (476)
..|.+++.++.+++++++.+.|++.+...+..+ ..++++|..++ + .++. + ++.+. +
T Consensus 265 ~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~ 344 (376)
T TIGR01977 265 KIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKT 344 (376)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHH
Confidence 889999999999999999999998654444332 24677777653 2 2222 1 22221 1
Q ss_pred ----cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 419 ----QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 419 ----~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
..+.+|++++.++|.+||++++++|++
T Consensus 345 ~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 345 IGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred hCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 236899999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=247.93 Aligned_cols=356 Identities=14% Similarity=0.136 Sum_probs=242.2
Q ss_pred CcHHHHHHHHHHHHhcccc---cc--cCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcC
Q 011842 79 AYMAGVLARYRKTLMERTK---HH--LGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 153 (476)
Q Consensus 79 ~~~~~il~~~~~~~~~~~~---~~--~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g 153 (476)
.+-.++++.+++....+.. .+ .|+|++. +++.....++.......-.++.......+..+++.++.+++++++|
T Consensus 49 ~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~-~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G 127 (481)
T PRK04366 49 VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMK-YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITG 127 (481)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcceecCcccCCC-CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhC
Confidence 4567888888877655432 22 3444433 2334444444431111112231112344677999999999999999
Q ss_pred CCCCcccEEEcCCchhHHHHHHHHHHh--hCCCc----EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHH
Q 011842 154 LENNEYWGYITNCGTEGNLHGILVGRE--VFPDG----ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAK 227 (476)
Q Consensus 154 ~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~----~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~ 227 (476)
++. ..+..++|+.+.+.++.+++. ..+++ .|+++++.|.++...++..|++++.+|++.++.+|+++|+++
T Consensus 128 ~~~---~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~ 204 (481)
T PRK04366 128 MDA---VTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAA 204 (481)
T ss_pred CCc---eEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhh
Confidence 973 245556666777665544332 12444 899999999999999999999999999988899999999999
Q ss_pred HHcCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCC
Q 011842 228 LLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGH 306 (476)
Q Consensus 228 l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~h 306 (476)
+.++++ +|++++++ ++|.+ +|+++|+++|+++|+ |+|||+|+..+.+.... ....++|++++++|
T Consensus 205 i~~~t~---~V~v~~Pn-~tG~~~~dl~eI~~~a~~~ga-----l~iVD~a~~~~~~g~~~-----~~~~GaD~~~~~~h 270 (481)
T PRK04366 205 VGEDTA---ALMLTNPN-TLGLFERNILEIAEIVHEAGG-----LLYYDGANLNAILGKAR-----PGDMGFDVVHLNLH 270 (481)
T ss_pred cccCCe---EEEEeCCC-CccccchHHHHHHHHHHHcCC-----EEEEEecChhhhcccCC-----ccccCCCEEEEech
Confidence 977664 67777776 89988 589999999999999 99999998644332111 01124999999999
Q ss_pred CCCCCCCCc-----eeEEeehhhhhhhcCC------ccccCCCC--Cc----ccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 307 KFVGCPMPC-----GVQITRMEHINVLSSN------VEYLASRD--AT----IMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 307 K~l~~p~~~-----G~l~~~~~~~~~l~~~------~~yl~~~~--~~----~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
||+++|.++ |++++++++.+.+... ..|....+ .. -.++.+...+++.|..+..+|.+|++++
T Consensus 271 K~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~ 350 (481)
T PRK04366 271 KTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREV 350 (481)
T ss_pred hhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999988655 5899998876655311 01211110 00 1122223446788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecC-------CcHHHh-----hceeec-----c-cCCEEEEEEcCC
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERP-------QDEEFV-----RRWQLA-----C-QGNIAHVVVMPN 430 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~-------~~~~~~-----~~~~l~-----~-~~~~lRv~~~~~ 430 (476)
.++...+++||+++|++. +..... +..+.++|..+ ...++. +++.+. . ..+.+|++++..
T Consensus 351 a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~ 429 (481)
T PRK04366 351 SEDAVLNANYLKARLKDI-YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTET 429 (481)
T ss_pred HHHHHHHHHHHHHHhHhh-CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCC
Confidence 999999999999999986 322222 22233444321 122222 233332 1 246899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Q 011842 431 VTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~~~~~~ 453 (476)
+|++|||+|+++|+++.++.+++
T Consensus 430 ~t~edid~l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 430 ESKETLDAFIAAMKQIAEEAKEN 452 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888764
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=242.81 Aligned_cols=295 Identities=15% Similarity=0.131 Sum_probs=218.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHH---HHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKA---ARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~---~~~~G~~v~~ 210 (476)
...++.+++++.+++++|.+++ ++++|+|+|+++..++.++... .+++.|+++..+|+|+... ++..|++++.
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~--~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~ 117 (381)
T PRK02948 40 TASSLLQVCRKTFAEMIGGEEQ--GIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTE 117 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--eEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEE
Confidence 3457788899999999998754 4899999999999888777542 3678999999999987654 4556999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+++++++.+|+++|++.+.++++ +|++++++|+||.+.|+++|.++|+++|+ ++|+|++++.+..+
T Consensus 118 v~~~~~~~~d~~~l~~~l~~~~~---lv~~~~~~n~tG~~~~~~~I~~l~~~~~~-----~vivD~~~~~g~~~------ 183 (381)
T PRK02948 118 IPVDKSGLIRLVDLERAITPDTV---LASIQHANSEIGTIQPIAEIGALLKKYNV-----LFHSDCVQTFGKLP------ 183 (381)
T ss_pred EeeCCCCCCCHHHHHHhcCCCCE---EEEEECCcCCcEeehhHHHHHHHHHHcCC-----EEEEEChhhccccc------
Confidence 99988899999999999876553 89899999999999999999999999999 99999998755444
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
++..+ .+|+++.++||+++ |.|+|+++++++. +..+.. ..........++.+....+++.++++.+. +..++
T Consensus 184 -~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~~~~~~~---~~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~ 257 (381)
T PRK02948 184 -IDVFEMGIDSLSVSAHKIYG-PKGVGAVYINPQVRWKPVFP---GTTHEKGFRPGTVNVPGIAAFLTAAENIL-KNMQE 257 (381)
T ss_pred -cCcccCCCCEEEecHHhcCC-CCcEEEEEEcCCCCCCCccc---CCCCCCCcCCCCccHHHHHHHHHHHHHHH-HHHHH
Confidence 23333 38999999999876 8899999998764 111100 00001111234554444555556666542 45788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecC-C----eeEEEEecCC--cHHHh-----hceeec----c--------------
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNE-L----SSTVVFERPQ--DEEFV-----RRWQLA----C-------------- 418 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~-~----~~iv~f~~~~--~~~~~-----~~~~l~----~-------------- 418 (476)
..++..++++++.+.|++.|+...... . ..++.|..+. ..++. +++.+. |
T Consensus 258 ~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~ 337 (381)
T PRK02948 258 ESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAI 337 (381)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHc
Confidence 889999999999999999886443321 1 2355565442 22222 222232 1
Q ss_pred ------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 ------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 ------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.++.+|++++.++|++|||+++++|+++.+.+++
T Consensus 338 ~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 338 GKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred CCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1368999999999999999999999999988875
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=242.18 Aligned_cols=291 Identities=16% Similarity=0.119 Sum_probs=219.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHH----HHHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-FPDGILYASRESHYSV----FKAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~ 210 (476)
...+...++++++++++|.+. +..+++|+|+|+++..++.++... .+++.|+++.++|++. ...++..|++++.
T Consensus 40 ~~~~~~~~~~~~la~~~~~~~-~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (373)
T cd06453 40 RATDAYEAAREKVARFINAPS-PDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKV 118 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEE
Confidence 345777788899999999872 235889999999998888776541 2788999999999984 4456678999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
|+.+.++.+|+++|++++.+++ .+|++++++|++|.+.|+++|.++|++||+ |+|+|++|+.+..+
T Consensus 119 v~~~~~~~~d~~~l~~~l~~~~---~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~-----~li~D~a~~~~~~~------ 184 (373)
T cd06453 119 VPVDDDGQLDLEALEKLLTERT---KLVAVTHVSNVLGTINPVKEIGEIAHEAGV-----PVLVDGAQSAGHMP------ 184 (373)
T ss_pred eecCCCCCcCHHHHHHHhcCCc---eEEEEeCcccccCCcCCHHHHHHHHHHcCC-----EEEEEhhhhcCcee------
Confidence 9998889999999999997654 388889999999999999999999999999 99999999866554
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-c-------ccCCCC-----Ccc-cCCCCChhHHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-E-------YLASRD-----ATI-MGSRNGHAPIFLW 355 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~-------yl~~~~-----~~~-~~sr~~~~~l~~~ 355 (476)
+++.+ ++|++++++|||++. .++|+++++++.++.+.... . +..... ..+ .++.+....+++|
T Consensus 185 -~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~ 262 (373)
T cd06453 185 -VDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLG 262 (373)
T ss_pred -eeccccCCCEEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHH
Confidence 22323 489999999999986 88999999988765543210 0 000000 011 2345555677889
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEeecC--CeeEEEEecCC--cHHHh-----hceeec----c---
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAMLNE--LSSTVVFERPQ--DEEFV-----RRWQLA----C--- 418 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~~--~~~iv~f~~~~--~~~~~-----~~~~l~----~--- 418 (476)
.+++.+...+++++.++..++++++.+.|++.+ +..+.++ ..++++|..+. ..++. +++.+. |
T Consensus 263 ~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~ 342 (373)
T cd06453 263 AAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQP 342 (373)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhH
Confidence 999988888999999999999999999999985 4333222 24677777553 22222 233332 1
Q ss_pred ------cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 419 ------QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 419 ------~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
..+.+|++++..+|.+|||+|+++|
T Consensus 343 ~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 343 LMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 1368999999999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=245.25 Aligned_cols=296 Identities=14% Similarity=0.096 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH--hhCCCcEEEecCCCchHH----HHHHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR--EVFPDGILYASRESHYSV----FKAARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~--~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v 211 (476)
.+..+++++.+++++|.++ +..+++|+|+|+++...+.+.. ...+|+.|+++..+|.|. ...++..|++++.+
T Consensus 75 ~~~~~~~r~~la~~~~~~~-~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v 153 (424)
T PLN02855 75 TDAYELARKKVAAFINAST-SREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFV 153 (424)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEE
Confidence 4556778899999999963 2359999999999887766531 234789999999999864 45667789999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+++.++.+|+++|++.|.++++ +|+++++++++|.+.|+++|+++|+++|+ ++++|++|+.+..+
T Consensus 154 ~~~~~~~~~~~~l~~~i~~~t~---lv~i~~~~n~tG~~~~~~~I~~l~~~~g~-----~vivD~a~~~g~~~------- 218 (424)
T PLN02855 154 GLTPDEVLDVEQLKELLSEKTK---LVATHHVSNVLGSILPVEDIVHWAHAVGA-----KVLVDACQSVPHMP------- 218 (424)
T ss_pred ecCCCCCcCHHHHHHHhccCce---EEEEeCccccccccCCHHHHHHHHHHcCC-----EEEEEhhhhcCCcC-------
Confidence 9987788999999999976554 88899999999999999999999999999 99999999765544
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc--------cccCC------CCCcccCCCCChhHHHHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV--------EYLAS------RDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~--------~yl~~------~~~~~~~sr~~~~~l~~~~ 356 (476)
+++.+ .+|++++++||++ +|.|+|++++++++++.+.... .|... ...-..||++....+.+++
T Consensus 219 ~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~ 297 (424)
T PLN02855 219 VDVQTLGADFLVASSHKMC-GPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGA 297 (424)
T ss_pred CCchhcCCCEEEeeccccc-CCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHH
Confidence 34433 3899999999965 5889999999988765542110 01000 0111235555555667778
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC------CeeEEEEecCC--cHHHh----h--ceeec----
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE------LSSTVVFERPQ--DEEFV----R--RWQLA---- 417 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~------~~~iv~f~~~~--~~~~~----~--~~~l~---- 417 (476)
+++.+...|++++.++..++++++++.|++. ++..+.+. ..+++.|..+. ..++. + ++.+.
T Consensus 298 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~ 377 (424)
T PLN02855 298 AIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHH 377 (424)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhh
Confidence 8887767799999999999999999999887 44444321 14688888763 22222 1 23322
Q ss_pred cc---------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 418 CQ---------GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 418 ~~---------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
|. ...+|++++.++|.+|||+|+++|+++.+.+
T Consensus 378 c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 378 CAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred hhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 10 2579999999999999999999999988764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-27 Score=240.24 Aligned_cols=289 Identities=16% Similarity=0.121 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-h--CC-CcEEEecCCCchHHHHH---HHHcCCeEEEE
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-V--FP-DGILYASRESHYSVFKA---ARMYRMECVKV 211 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~--~p-~~~Vl~s~~~H~S~~~~---~~~~G~~v~~v 211 (476)
.+++ .++.+.+.+|..+ +.++++|+|+|+++..+++++.. . .+ ++.|+++..+|+++... ++..|++++.+
T Consensus 43 ~l~~-a~~~~~~~~~~~~-~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v 120 (382)
T TIGR03403 43 AIAE-ALDKLYKGINARD-LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYL 120 (382)
T ss_pred HHHH-HHHHHHHHcCcCC-CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEE
Confidence 4444 4444555677631 23599999999999988876531 0 14 56899999999887654 34569999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
|+++++.+|+++|++++.++++ ++++++++|++|.+.|+++|.++|+++|+ ++|+|++++.+..+
T Consensus 121 ~~~~~g~~d~~~l~~~i~~~t~---lv~~~~~~n~tG~~~~~~~I~~la~~~g~-----~~ivD~a~~~g~~~------- 185 (382)
T TIGR03403 121 PINEQGTITAEQVREAITEKTA---LVSVMWANNETGMIFPIKEIGEICKERGV-----LFHTDAVQAIGKIP------- 185 (382)
T ss_pred ecCCCCCCCHHHHHHhcccCCe---EEEEEcccCCCccccCHHHHHHHHHHcCC-----EEEEechhhcCCCc-------
Confidence 9988899999999999977664 78889999999999999999999999999 99999999866554
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC--CCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
+++.+ .+|++++++|||++ |.|+|++++|+... + .+.+... ......++.+....+.+..+++.. .+.++.
T Consensus 186 ~~~~~~~~D~~~~s~~K~~g-p~G~g~l~vr~~~~--~--~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~ 259 (382)
T TIGR03403 186 VDVQKAGVDFLSFSAHKFHG-PKGVGGLYIRKGVE--L--TPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLA-NEYLDF 259 (382)
T ss_pred cCccccCCCEEEEcchhhCC-CCceEEEEECCCCC--C--CCcccCCCCCCCcccCCcChHHHHHHHHHHHHH-HHhHHH
Confidence 34444 49999999999865 99999999987641 1 1111100 011123455444444565666544 335677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCC--cHHHhh-----ceeec----c---------------
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQ--DEEFVR-----RWQLA----C--------------- 418 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~--~~~~~~-----~~~l~----~--------------- 418 (476)
..++..++++++.+.|++.+...+..+. .+++.|..+. ...+.+ ++.+. |
T Consensus 260 ~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g 339 (382)
T TIGR03403 260 EKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIG 339 (382)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcC
Confidence 7888999999999999887544444332 3466666542 333322 22221 1
Q ss_pred -----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 -----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 -----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++.+|++++.++|++|||+|+++|+++.+++
T Consensus 340 ~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 340 ADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred CChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 12579999999999999999999999988764
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=241.23 Aligned_cols=292 Identities=16% Similarity=0.128 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC--CC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC--LI 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~--~~ 215 (476)
.....++++.+++++|.+. .++|+|+|+||..++.+... +++.|+++..+|+|...+++..|++++.+++ ++
T Consensus 62 ~~~~~~l~~~lA~~~g~~~----~~~~~g~t~a~~~al~~l~~--~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~ 135 (387)
T PRK09331 62 KPPIADFHEDLAEFLGMDE----ARVTHGAREGKFAVMHSLCK--KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP 135 (387)
T ss_pred ChHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc
Confidence 3457778888999999863 78899999999999888765 8999999999999999999999999999998 67
Q ss_pred CCccCHHHHHHHHHcC----CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 SGEIDCADFKAKLLQN----KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~----~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++.+|+++|+++|.+. ...+.+|+++++++++|.+.|+++|+++|++||+ ++|+|++|+.+.+|
T Consensus 136 ~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~-----~livD~a~~~g~~~------- 203 (387)
T PRK09331 136 EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGI-----PFLLNGAYTVGRMP------- 203 (387)
T ss_pred CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCC-----EEEEECCcccCCcC-------
Confidence 7889999999999753 2346688899999999999999999999999999 99999999877665
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
+++.. ++|+++.++|||+++|.++|+++++++.++.+... ..|.......+.++.+...++.+++++..+. ...++
T Consensus 204 ~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~--~~~~~ 281 (387)
T PRK09331 204 VDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV--ERVKR 281 (387)
T ss_pred CCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH--HHHHH
Confidence 33333 38999999999999999999999998876655322 2222111011222222233455555554432 12245
Q ss_pred HHHHHHHHHHHHHHHHhc-CCeEee--cCCeeEEEEecCCc-----------HHHhh-----cee-ecccCCEEEEEEcC
Q 011842 370 VQKCLRNAHYLKDRLLDA-GISAML--NELSSTVVFERPQD-----------EEFVR-----RWQ-LACQGNIAHVVVMP 429 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~-g~~~~~--~~~~~iv~f~~~~~-----------~~~~~-----~~~-l~~~~~~lRv~~~~ 429 (476)
+++.+++++++++.|++. |+..+. +..++++.+..+.- .++.+ ++. +......+|.+.+.
T Consensus 282 ~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~~~ 361 (387)
T PRK09331 282 WDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLSTY 361 (387)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEEec
Confidence 667788999999999998 665543 22356666654410 11211 222 12233344444445
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~~ 449 (476)
.+|++|+++++++|+++.++
T Consensus 362 g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 362 GLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999998765
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=238.66 Aligned_cols=287 Identities=19% Similarity=0.179 Sum_probs=221.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHHH----HHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSVF----KAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~ 210 (476)
...++.+++++.+++++|.+++ ...++|+|+|+++..++...+. ..+++.|+++..+|+|.. ..++..|++++.
T Consensus 40 ~~~~~~~~~r~~la~~lg~~~~-~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~ 118 (371)
T PF00266_consen 40 EFAEILEEAREALAKLLGAPPD-EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRV 118 (371)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTT-EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhHHHHHHHHHHHHhcCCccc-cccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 4567888999999999999862 4589999999999888888743 348899999999999876 445567999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+.++.+|+++++++|.++++ +|++++.+|.+|.+.|+++|.++|+++|+ ++++|++++.+..+
T Consensus 119 i~~~~~~~~~~~~~~~~l~~~~~---lv~~~~~~~~tG~~~pi~~I~~~~~~~~~-----~~~vD~~~~~g~~~------ 184 (371)
T PF00266_consen 119 IPADPGGSLDLEDLEEALNPDTR---LVSISHVENSTGVRNPIEEIAKLAHEYGA-----LLVVDAAQSAGCVP------ 184 (371)
T ss_dssp EEEGTTSSCSHHHHHHHHHTTES---EEEEESBETTTTBBSSHHHHHHHHHHTTS-----EEEEE-TTTTTTSS------
T ss_pred ccccccchhhhhhhhhhhccccc---eEEeecccccccEEeeeceehhhhhccCC-----ceeEechhcccccc------
Confidence 99988899999999999987665 99999999999999999999999999999 99999999988777
Q ss_pred CCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC---CccccC----------CCCCcc-cCCCCChhHHHHH
Q 011842 291 KVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS---NVEYLA----------SRDATI-MGSRNGHAPIFLW 355 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~---~~~yl~----------~~~~~~-~~sr~~~~~l~~~ 355 (476)
+++.+. +|++++++|| +++|.|+|+++++++.++.+.. ...|.. .....+ .|+.+....+++.
T Consensus 185 -id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~ 262 (371)
T PF00266_consen 185 -IDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALN 262 (371)
T ss_dssp ---TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHH
T ss_pred -ccccccccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHH
Confidence 566553 9999999999 7779999999999987665521 111110 011112 3455555556677
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-----CeeEEEEecCC--cHHHh-----hceeecc----c
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-----LSSTVVFERPQ--DEEFV-----RRWQLAC----Q 419 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~iv~f~~~~--~~~~~-----~~~~l~~----~ 419 (476)
.+++.+...|++++.++..++++++.+.|.+.+...+..+ ..++++|..+. ...+. ++..+.. .
T Consensus 263 ~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~ 342 (371)
T PF00266_consen 263 EALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSACA 342 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTTTC
T ss_pred HHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCccc
Confidence 7888887778999999999999999999999987666432 24677777654 22221 2333322 1
Q ss_pred ---------CCEEEEEEcCCCCHHHHHHH
Q 011842 420 ---------GNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 420 ---------~~~lRv~~~~~~T~edid~~ 439 (476)
++.+|++++.++|++|||+|
T Consensus 343 ~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 343 GPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 37999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=237.42 Aligned_cols=294 Identities=14% Similarity=0.122 Sum_probs=220.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++.+++++++++++|.+. +...++|+|||+|+..++.+... +++.|+++...|++ +...++..|++++.+|.
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~-~~~~~~~~~~t~al~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTEN-GLTFLLSGSGTGAMEAALSNLLE--PGDKVLVGVNGVFGDRWADMAERYGADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CCEEEEecCcHHHHHHHHHHhCC--CCCEEEEecCCchhHHHHHHHHHhCCCeEEeec
Confidence 456778899999999999953 23477899999999988887754 89999999888887 46778889999999999
Q ss_pred CCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
++++.+|+++|++.+.+ +++ +|+++++.|++|.+.|+++|.++|+++|+ ++++|++|+.+..+ +
T Consensus 106 ~~~~~~~~~~l~~~i~~~~~~---~v~i~~~~~~~G~~~~~~~i~~~a~~~~~-----~li~D~~~~~g~~~-------~ 170 (356)
T cd06451 106 PWGEAVSPEEIAEALEQHDIK---AVTLTHNETSTGVLNPLEGIGALAKKHDA-----LLIVDAVSSLGGEP-------F 170 (356)
T ss_pred CCCCCCCHHHHHHHHhccCCC---EEEEeccCCCcccccCHHHHHHHHHhcCC-----EEEEeeehhccCcc-------c
Confidence 87789999999999976 443 88888899999999999999999999999 99999998754333 2
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC---CccccCC---------CCCcccCCCCChhHHHHHHHHH
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS---NVEYLAS---------RDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~---~~~yl~~---------~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
+... .+|+++.++|||+++|.++|++++++++++.+.. ...+... ......++.+......+.++++
T Consensus 171 ~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~ 250 (356)
T cd06451 171 RMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALD 250 (356)
T ss_pred cccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHH
Confidence 2222 3799999999999999999999999887665532 1111110 0001122332222345667777
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--eeEE-EEecCC---cHHH----h-h-ceeec-----ccCCE
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--SSTV-VFERPQ---DEEF----V-R-RWQLA-----CQGNI 422 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~iv-~f~~~~---~~~~----~-~-~~~l~-----~~~~~ 422 (476)
.+...+++++.++..++++++.+.|++.|+....++. .+++ ++..+. ...+ . + ++.+. ..+++
T Consensus 251 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~ 330 (356)
T cd06451 251 LILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKV 330 (356)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCE
Confidence 7777788999999999999999999998875543322 3343 344442 1222 2 2 33332 13468
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+|+++++++|++||++|+++|+++.
T Consensus 331 iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 331 FRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-27 Score=239.70 Aligned_cols=289 Identities=17% Similarity=0.119 Sum_probs=212.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHHH----HHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSVF----KAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~ 210 (476)
+..++.+++++.+++++|.+++ ..++++|+|+++...+.+... ..||+.|++++++|+|.. ..++..|++++.
T Consensus 57 ~~~~~~~~l~~~ia~~~~~~~~--~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~ 134 (397)
T TIGR01976 57 RADQVVDDAREAVADLLNADPP--EVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--eEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE
Confidence 3456778899999999999754 488999999998766655422 248899999999998754 556778999999
Q ss_pred EeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 211 VDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 211 v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++.++ ++.+|+++|++++.++++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~---lv~i~~~~n~tG~~~~~~~i~~~~~~~~~-----~~ivD~a~~~~~~~----- 201 (397)
T TIGR01976 135 ARVDEATGELHPDDLASLLSPRTR---LVAVTAASNTLGSIVDLAAITELVHAAGA-----LVVVDAVHYAPHGL----- 201 (397)
T ss_pred EeccccCCCcCHHHHHHhcCCCce---EEEEeCCCCCCCccCCHHHHHHHHHHcCC-----EEEEehhhhccccC-----
Confidence 99875 688999999999976554 88899999999999999999999999999 99999998654332
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCC--CcccCCCCChhHHHHHHHHHHhChhc
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRD--ATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~--~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
++..+ .+|+++.++|||++ | ++|+++++++.++.+... ..|..... .--.|+++....+.+..+++.+...|
T Consensus 202 --~~~~~~~~d~~~~s~~K~~g-~-~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g 277 (397)
T TIGR01976 202 --IDVQATGADFLTCSAYKFFG-P-HMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLG 277 (397)
T ss_pred --CCHHHcCCCEEEEechhhcC-C-ceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhC
Confidence 33333 38999999999986 3 599999998876655321 12221111 11235666555566777777653332
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHhcC-CeEeec----CCeeEEEEecCC--cHHHhh-----ceeec--
Q 011842 366 --------------FQKEVQKCLRNAHYLKDRLLDAG-ISAMLN----ELSSTVVFERPQ--DEEFVR-----RWQLA-- 417 (476)
Q Consensus 366 --------------~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~----~~~~iv~f~~~~--~~~~~~-----~~~l~-- 417 (476)
+++..++..++++++++.|++.+ +..+.+ ..++++.|..++ ..++.+ ++.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~ 357 (397)
T TIGR01976 278 ESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAG 357 (397)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeC
Confidence 56778888899999999999886 433332 135777776553 233332 22222
Q ss_pred --------------ccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 418 --------------CQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 418 --------------~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
..++++|++++.++|++|||+|+++|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 358 HFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred ccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 12468999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=238.27 Aligned_cols=300 Identities=13% Similarity=0.087 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v~~ 213 (476)
...++.+++++++++++|.+.+ ...+++++||.++..++..... ||+.|++++..|++. ...++..|++++.++.
T Consensus 39 ~~~~~~~~~~~~l~~~~g~~~~-~~vi~~~~gt~a~~~a~~~~~~--~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~ 115 (401)
T PLN02409 39 AFPALTKELLEDVKYIFKTKSG-TPFIFPTTGTGAWESALTNTLS--PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVES 115 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCcHHHHHHHHHhcCC--CCCEEEEeCCCchhHHHHHHHHHcCCceEEEEC
Confidence 5568899999999999999743 3578889999998887766544 899999999999775 5777888999999998
Q ss_pred CCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHH--HHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 214 LISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQT--LEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~i--a~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.++.+|+++|++++++++ .++.+|++++++|+||.+.|+++|.++ |+++|+ +++||++++.+..+
T Consensus 116 ~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~-----~~vvD~v~s~g~~~------ 184 (401)
T PLN02409 116 PWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPA-----LLLVDGVSSIGALD------ 184 (401)
T ss_pred CCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCc-----EEEEEcccccCCcc------
Confidence 8666789999999998732 234588899999999999999999999 999999 99999999865555
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC---CccccCC-------CCCcc-cCCCCChhHHHHHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS---NVEYLAS-------RDATI-MGSRNGHAPIFLWYTL 358 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~---~~~yl~~-------~~~~~-~~sr~~~~~l~~~~~l 358 (476)
++..+ ++|++++++|||+++|.|+|+++++++.++.+.. ...|+.- ...+. .++.+....+++..++
T Consensus 185 -id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al 263 (401)
T PLN02409 185 -FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAAL 263 (401)
T ss_pred -ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHH
Confidence 45544 4899999999999999999999999887665532 1122210 00011 2344433445666777
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-C--e-eEEEEecCC---cHHHh----hcee--ec-----ccC
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-L--S-STVVFERPQ---DEEFV----RRWQ--LA-----CQG 420 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~--~-~iv~f~~~~---~~~~~----~~~~--l~-----~~~ 420 (476)
+.+...|++++.++..++++++++.|++.|+..+.++ . + .+++|..|. ...+. +++. +. ..+
T Consensus 264 ~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~ 343 (401)
T PLN02409 264 DLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAG 343 (401)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccC
Confidence 7777789999999999999999999999987665432 2 3 345566553 12232 2322 22 246
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+||+.+.++|.+||..++++|.++.+.+
T Consensus 344 ~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 344 KVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 789999999999999999999999987654
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=234.13 Aligned_cols=290 Identities=16% Similarity=0.179 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--CC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--IS 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--~~ 216 (476)
....++++.+++++|.+. ..+++|+++++..++.+... +++.|+++...|+|...+++..|++++.+|++ ++
T Consensus 51 ~~~~~~~e~lA~~~g~~~----~~i~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~ 124 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDE----ARVTHGAREGKFAVMHALCK--EGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPE 124 (370)
T ss_pred hHHHHHHHHHHHHhCCCc----eEEECChHHHHHHHHHHhhC--CCCEEEECCcccHHHHHHHHHcCCEEEEEecCCccc
Confidence 344455667999999974 67899999999988887765 89999999999999999999999999999986 35
Q ss_pred CccCHHHHHHHHHcCC----CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 GEIDCADFKAKLLQNK----DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~----~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.+|+++|+++|.+.+ ..+.+|+++++++++|.+.|+++|+++|++||+ ++++|+||+.+.++ .
T Consensus 125 ~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~-----~livDea~~~g~~~-------~ 192 (370)
T TIGR02539 125 YKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGV-----PLLLNCAYTVGRMP-------V 192 (370)
T ss_pred CCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCC-----eEEEECccccCCcC-------C
Confidence 7899999999997521 234588888999999999999999999999999 99999999865433 1
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCC-cccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDA-TIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~-~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
++.. .+|+++.++|||++.+.++|++++++++++.+.....|..-... .+.++.....+..+++++... .+.+ +..
T Consensus 193 ~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~l-~~~ 270 (370)
T TIGR02539 193 SAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHV-VERV-KRW 270 (370)
T ss_pred CHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHH-HHHH-HHH
Confidence 2222 37999999999999888899999998887766443332211111 122233223344455555432 1222 233
Q ss_pred HHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEecCCc-----------HHHh-----hcee-ecc-cCCEEEEEEcCC
Q 011842 371 QKCLRNAHYLKDRLLDAGISAM--LNELSSTVVFERPQD-----------EEFV-----RRWQ-LAC-QGNIAHVVVMPN 430 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~~~~-----------~~~~-----~~~~-l~~-~~~~lRv~~~~~ 430 (476)
.+..+++++|++.|++.|+..+ .+..++++++..+.. ..+. +++. +.. ..+++|++++ .
T Consensus 271 ~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~~~~iRis~~-~ 349 (370)
T TIGR02539 271 DEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQTKYFKLSVY-G 349 (370)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCcceEEEEEec-C
Confidence 4456667899999999997653 245678888876521 1122 1222 211 2358999985 6
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~~ 449 (476)
.|++|+++++++|+++.++
T Consensus 350 ~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 350 LTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 7999999999999987654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=236.16 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHHHH---cCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAARM---YRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~~~---~G~~v~~v~~ 213 (476)
+..+++++++++++|.+++ .+++|+|+|+|+.+++.++.. ..+++.|+++..+|+++...++. .|++++.++.
T Consensus 49 ~~~~~~r~~ia~~~g~~~~--~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~ 126 (404)
T PRK14012 49 EAVDIARNQIADLIGADPR--EIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126 (404)
T ss_pred HHHHHHHHHHHHHcCcCcC--eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEcc
Confidence 4556778899999999754 489999999999998877652 24789999999999998665544 4999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+++|.+|+++|+++|.++++ +|++++.++++|.+.|+++|.++|+++|+ ++|+|++|+.+..+ ++
T Consensus 127 ~~~g~~d~~~l~~~i~~~t~---lv~~~~~~n~tG~~~~~~~I~~la~~~g~-----~vivD~a~~~g~~~-------~~ 191 (404)
T PRK14012 127 QSNGIIDLEKLEAAMRDDTI---LVSIMHVNNEIGVIQDIAAIGEICRERGI-----IFHVDAAQSVGKVP-------ID 191 (404)
T ss_pred CCCCcCCHHHHHHhcCCCCE---EEEEECcCCCccchhhHHHHHHHHHHcCC-----EEEEEcchhcCCcc-------cC
Confidence 88899999999999987664 88899999999999999999999999999 99999999876554 23
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC-CCcc-cCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR-DATI-MGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~-~~~~-~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
+.. .+|++++++||+++ |.++|+++++++....+. +.+.... ...+ .++.+....+.+.+++... ..+..+..
T Consensus 192 ~~~~~~D~~~~s~~K~~g-p~g~G~l~~~~~~~~~~~--~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~ 267 (404)
T PRK14012 192 LSKLKVDLMSFSAHKIYG-PKGIGALYVRRKPRVRLE--AQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATEN 267 (404)
T ss_pred cccCCCCEEEEehhhccC-CCceEEEEEecCCCCCCC--ceecCCCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHH
Confidence 333 38999999999665 789999999976432221 1111111 0111 2333333333444455443 23566678
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecC------CeeEEEEecCCcHHHhh---ceeec----c-------------------
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNE------LSSTVVFERPQDEEFVR---RWQLA----C------------------- 418 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~------~~~iv~f~~~~~~~~~~---~~~l~----~------------------- 418 (476)
++..++++++.+.|++.+...+.++ ....+.|...+.+.+.. +..+. |
T Consensus 268 ~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (404)
T PRK14012 268 ERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDE 347 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCCChh
Confidence 8889999999999988653333211 12245555433233322 21110 0
Q ss_pred -cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 -QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 -~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|+++++++|++|||+++++|+++.+.+
T Consensus 348 ~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 348 LAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred hcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13678999999999999999999999988765
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=236.57 Aligned_cols=292 Identities=14% Similarity=0.093 Sum_probs=219.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCccc-EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYW-GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~-g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+..|++.+... +++|+|+++|++.++.+..+ |||+|+++++.|.++....+++|++++.++++
T Consensus 66 G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~--pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~ 143 (393)
T COG0436 66 GIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLN--PGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLD 143 (393)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCC
Confidence 4569999999999999997654444 99999999999999999988 99999999999999999999999999999975
Q ss_pred ---CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 215 ---ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 215 ---~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.++.+|++.|+++++++++ +|++|+|+|+||++.+ +++|+++|++||+ ||++|++|..+.+....+
T Consensus 144 ~~~~~f~~d~~~l~~~i~~ktk---~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i-----~ii~DEiY~~l~yd~~~~ 215 (393)
T COG0436 144 EEENGFKPDLEDLEAAITPKTK---AIILNSPNNPTGAVYSKEELKAIVELAREHDI-----IIISDEIYEELVYDGAEH 215 (393)
T ss_pred cCccCCcCCHHHHHhhcCccce---EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe-----EEEEehhhhhcccCCCCc
Confidence 3789999999999998776 9999999999999954 8999999999999 999999999988865434
Q ss_pred CCCCCCcc---cccEEEEcCCCCCCCCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-
Q 011842 289 APKVSFKK---PIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY- 363 (476)
Q Consensus 289 ~~~~~~~~---~~Dsi~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~- 363 (476)
.+.+.... .+-++.+-++-+.+++|++||++++ .++++.+....+|+..+ ...+.|.++..++..
T Consensus 216 ~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~----------~~~~~Q~aa~~aL~~~ 285 (393)
T COG0436 216 PSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC----------APTPAQYAAIAALNGP 285 (393)
T ss_pred CCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccC----------CCHHHHHHHHHHhcCc
Confidence 43333332 2333333344466799999999999 55665554334443221 234666666666642
Q ss_pred ---hcHHHHHHHHHHHHHHHHHHHHhcC-CeEeecC-CeeEEEEecCC---cHHHhh----ceee---c-------ccCC
Q 011842 364 ---KGFQKEVQKCLRNAHYLKDRLLDAG-ISAMLNE-LSSTVVFERPQ---DEEFVR----RWQL---A-------CQGN 421 (476)
Q Consensus 364 ---~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~~-~~~iv~f~~~~---~~~~~~----~~~l---~-------~~~~ 421 (476)
...+...+...++++.+.+.|.+.+ +....+| ++..++...+. +.+|.. +..| | ...+
T Consensus 286 ~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~ 365 (393)
T COG0436 286 QSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEG 365 (393)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCC
Confidence 2456666788899999999999886 5555535 55666666653 234433 2222 1 1236
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+|++.. .+.++++..++.|.+..+.
T Consensus 366 ~vRis~~--~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 366 YVRLSLA--TSEETLEEALRRLARFLAE 391 (393)
T ss_pred eEEEEEe--cCHHHHHHHHHHHHHHHHh
Confidence 8998875 4448888888888877654
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=230.32 Aligned_cols=292 Identities=14% Similarity=0.103 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc----EEEecCCCchHHHHHHHHc---CCeEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG----ILYASRESHYSVFKAARMY---RMECV 209 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~----~Vl~s~~~H~S~~~~~~~~---G~~v~ 209 (476)
....-++.++.+|+|+|+++++ ++||+|+|+||.++++.... ++++ .|++.+.+|.++...++.+ |++++
T Consensus 83 ~~~~~E~aR~~VAklInAd~~d--IiFts~ATEs~Nlvl~~v~~-~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt 159 (428)
T KOG1549|consen 83 AEDAVEAAREQVAKLINADPSD--IVFTSGATESNNLVLKGVAR-FFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVT 159 (428)
T ss_pred hhHHHHHHHHHHHHHhCCCCCc--EEEeCCchHHHHHHHHHhhc-cccccccceEEEecccCcchhHHHHHHHhcCeEEE
Confidence 3444557889999999999765 99999999999999887543 2444 8999999999999888877 89999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|++.+|..|.+.|++.|+++|+ +|.+.+.+++.|.+.|++||.++|+++|+ .+|+|+||+.+..+
T Consensus 160 ~lpv~~~~~~d~~~~~~~i~~~T~---lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v-----~v~~DaAQavG~i~----- 226 (428)
T KOG1549|consen 160 YLPVEDSGLVDISKLREAIRSKTR---LVSIMHVNNEIGVLQPVKEIVKICREEGV-----QVHVDAAQAVGKIP----- 226 (428)
T ss_pred EeccCccccccHHHHHHhcCCCce---EEEEEecccCccccccHHHHHHHhCcCCc-----EEEeehhhhcCCcc-----
Confidence 999998899999999999999887 89999999999999999999999999999 99999999988887
Q ss_pred CCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCC-Cc-ccCCCCChhHHHHHHHHHHhCh--h
Q 011842 290 PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD-AT-IMGSRNGHAPIFLWYTLNRKGY--K 364 (476)
Q Consensus 290 ~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~-~~-~~~sr~~~~~l~~~~~l~~~g~--~ 364 (476)
+|+.+. +|++++++|||+++|. +|+||+|.. ...+...+.+.++.. .. -.|++.-..++.+-.+.+.... .
T Consensus 227 --vDV~eln~D~~s~s~HK~ygp~~-iGaLYvr~~-~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~~ 302 (428)
T KOG1549|consen 227 --VDVQELNADFLSISAHKIYGPPG-IGALYVRRK-RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEMA 302 (428)
T ss_pred --ccHHHcCchheeeecccccCCCc-ceEEEEccC-CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhcc
Confidence 788775 9999999999999555 999999972 112233344544321 11 2344443344444455544421 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh-cCCeEeec-CC---eeEEEEecC--CcHHH----------------hhc--ee--e-
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLD-AGISAMLN-EL---SSTVVFERP--QDEEF----------------VRR--WQ--L- 416 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~-~g~~~~~~-~~---~~iv~f~~~--~~~~~----------------~~~--~~--l- 416 (476)
....++.+ +-..+...+.. .....+.. +. .+.+.|..+ .+... .+. +. +
T Consensus 303 ~~~~~~~~---~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~ 379 (428)
T KOG1549|consen 303 YDEAIIKR---LSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLR 379 (428)
T ss_pred hhHHHHHH---HHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhh
Confidence 23333333 33444444433 22222211 11 133333332 11100 000 00 0
Q ss_pred ------cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 417 ------ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 417 ------~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..-...+|+++..++|++|++++++.+++..+.+.
T Consensus 380 ~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~ 420 (428)
T KOG1549|consen 380 AIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLR 420 (428)
T ss_pred hcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhcc
Confidence 01136799999999999999999999999887665
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-26 Score=248.51 Aligned_cols=357 Identities=17% Similarity=0.193 Sum_probs=250.6
Q ss_pred cHHHHHHHHHHHHhcccc---cccCCCCcCCcchHHHHHHHHHhhCCCCC--CcccCccchhhHHHHHHHHHHHHHHcCC
Q 011842 80 YMAGVLARYRKTLMERTK---HHLGYPYNLDFDYGALAQLQHFSINNLGD--PFIESNYGVHSRQFEVGVLDWFARLWEL 154 (476)
Q Consensus 80 ~~~~il~~~~~~~~~~~~---~~~g~p~~~~~~~~~l~~~l~~~~n~~g~--~~~~~~~~~~~~~le~~~~~~la~l~g~ 154 (476)
+-.+++..++++...+.. .++|--... ..+..+.+++....+.+.. ++.......+..+++.++.+|+++++|+
T Consensus 467 sE~e~~r~~~~L~~kn~~~~~~fi~lGsct-mk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGm 545 (939)
T TIGR00461 467 SETEMLRYLHRLESKDLALNNSMIPLGSCT-MKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGF 545 (939)
T ss_pred CHHHHHHHHHHHHhcCCCccccCCCCccCC-CccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCC
Confidence 445777777776555422 122211111 1234555555444443322 2221112335779999999999999999
Q ss_pred CCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHH
Q 011842 155 ENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKL 228 (476)
Q Consensus 155 ~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l 228 (476)
+. .++..++|++|++++++++|.+ ..+.+|+++...|.+..+.+++.|++++.||++++|.+|+++|++++
T Consensus 546 d~---~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i 622 (939)
T TIGR00461 546 DA---ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKA 622 (939)
T ss_pred CC---cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHH
Confidence 84 3788899999999988888762 24578999999999998889999999999999999999999999999
Q ss_pred HcCCCCcEEEEEeeCCCccccccC-HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCC
Q 011842 229 LQNKDKPAIINVNIGTTVKGAVDD-LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHK 307 (476)
Q Consensus 229 ~~~~~~p~~vv~t~gtt~tG~id~-l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK 307 (476)
+++..++.+|++++++| +|.++| +++|+++|+++|. ++++|+|+......... ....++|++++|.||
T Consensus 623 ~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~-----~v~VDgAq~~al~~l~~-----Pg~~GaDi~~~s~HK 691 (939)
T TIGR00461 623 EQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGG-----QVYLDGANMNAQVGLTS-----PGDLGADVCHLNLHK 691 (939)
T ss_pred hhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCC-----EEEEEecChhhCCCCCC-----ccccCCCEEEecCCc
Confidence 87545667999999998 699977 9999999999999 99999999543222111 122349999999999
Q ss_pred CCCCCCC-----ceeEEeehhhhhhhcCCcc---c-cCCCC----Ccc-cCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 308 FVGCPMP-----CGVQITRMEHINVLSSNVE---Y-LASRD----ATI-MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 308 ~l~~p~~-----~G~l~~~~~~~~~l~~~~~---y-l~~~~----~~~-~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
+++.|.+ +|++++++++...++...- + ..+.. .+. .++++...++..|+.++.+|.+|+++..+..
T Consensus 692 tf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~a 771 (939)
T TIGR00461 692 TFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVA 771 (939)
T ss_pred cCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 9995554 5999999876544432110 0 00000 011 2344445568899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEeecC----CeeEEEEecCC--------cHHHhh-----ceeecc----cCCEEEEEEcCCCC
Q 011842 374 LRNAHYLKDRLLDAGISAMLNE----LSSTVVFERPQ--------DEEFVR-----RWQLAC----QGNIAHVVVMPNVT 432 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~----~~~iv~f~~~~--------~~~~~~-----~~~l~~----~~~~lRv~~~~~~T 432 (476)
..+|+|+.++|++ ++..+.+. ..+-++|+.+. ..++.+ ++.-+. ..+.+-+.++..+|
T Consensus 772 ilnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~es 850 (939)
T TIGR00461 772 ILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESES 850 (939)
T ss_pred HHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCC
Confidence 9999999999987 44433332 12345555542 122222 222221 12366777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 011842 433 IDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 433 ~edid~~~~~l~~~~~~~~~ 452 (476)
++|||+|+++|.++.+++.+
T Consensus 851 keelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 851 LEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-27 Score=233.87 Aligned_cols=325 Identities=15% Similarity=0.104 Sum_probs=229.3
Q ss_pred HHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc
Q 011842 88 YRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCG 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg 167 (476)
-++.++..+++|+| +...+.....+. ..+...|.+...++.-.+...+..++.+.+++++|.+. .++.++|
T Consensus 38 ~~~~~nf~SNdYLG----La~~~~~~~a~~-~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~----al~f~SG 108 (388)
T COG0156 38 GRKVLNFCSNDYLG----LASHPELIEAAK-AAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEA----ALLFSSG 108 (388)
T ss_pred CceeEeeeccCccc----ccCCHHHHHHHH-HHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCc----EEEEccc
Confidence 45567888999999 444423222222 22222222222333333456788888888999999985 7888999
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCC
Q 011842 168 TEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGT 244 (476)
Q Consensus 168 t~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gt 244 (476)
..||+..+.+... +++.|+.++..|.|+.+++++.+++++.++++ |+++||+.|++. ..++.+|++....
T Consensus 109 y~AN~~~i~~l~~--~~dli~~D~lnHASiidG~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVf 181 (388)
T COG0156 109 FVANLGLLSALLK--KGDLIFSDELNHASIIDGIRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVF 181 (388)
T ss_pred chhHHHHHHHhcC--CCcEEEEechhhhhHHHHHHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccc
Confidence 9999999988877 79999999999999999999999999999987 999999999873 1134567666779
Q ss_pred CccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCCCCCCcc-c-ccEEEEcCCCCCCCCCCceeEEee
Q 011842 245 TVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAPKVSFKK-P-IGSVSVSGHKFVGCPMPCGVQITR 321 (476)
Q Consensus 245 t~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~~~~~~~-~-~Dsi~~s~hK~l~~p~~~G~l~~~ 321 (476)
+|.|.+.||++|++++++|++ |++||+||+.+++ +..++.....+.. . +|+++.++.|.+++ ..|++..+
T Consensus 182 SMdGdiApL~~l~~L~~ky~a-----~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs--~Gg~v~g~ 254 (388)
T COG0156 182 SMDGDIAPLPELVELAEKYGA-----LLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS--SGGYIAGS 254 (388)
T ss_pred cCCCCcCCHHHHHHHHHHhCc-----EEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc--cCceeeCc
Confidence 999999999999999999999 9999999996554 3444432122222 3 79999999999994 23444444
Q ss_pred hhhhhhhcC-CccccCCCCCcccCCCCChhHHH--HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee
Q 011842 322 MEHINVLSS-NVEYLASRDATIMGSRNGHAPIF--LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS 398 (476)
Q Consensus 322 ~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~--~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~ 398 (476)
..+.+.+.. ...|+++. ...++.. ...+++.+ +...++.+++.++..++++.++..++.. .+..++
T Consensus 255 ~~~~d~L~~~ar~~ifSt--------alpP~~aaa~~~al~~l--~~~~~~r~~L~~~~~~~~~~~~~~~~~~-~~s~s~ 323 (388)
T COG0156 255 AALIDYLRNRARPFIFST--------ALPPAVAAAALAALRIL--EEGPERRERLQELAAFFRSLLKALGLVL-LPSESP 323 (388)
T ss_pred HHHHHHHHHhCCceeccC--------CCCHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCCC
Confidence 545554432 34555443 2222222 22334433 3457788999999999998777777643 456677
Q ss_pred EEEEecCCcH---HH-----hhcee--------ecccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 399 TVVFERPQDE---EF-----VRRWQ--------LACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 399 iv~f~~~~~~---~~-----~~~~~--------l~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
|+.+...+.. ++ .+++. +|....++|++++..+|++||++++++|.++
T Consensus 324 I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 324 IIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred eeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 8877766532 11 12333 2345678999999999999999999999764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=250.39 Aligned_cols=352 Identities=16% Similarity=0.185 Sum_probs=241.8
Q ss_pred cHHHHHHHHHHHHhcccc-----cccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccc-----hhhHHHHHHHHHHHH
Q 011842 80 YMAGVLARYRKTLMERTK-----HHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYG-----VHSRQFEVGVLDWFA 149 (476)
Q Consensus 80 ~~~~il~~~~~~~~~~~~-----~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~-----~~~~~le~~~~~~la 149 (476)
+-.++++.++++-..+.. ..+|+ ..+.+++.....+ ...+.+.. .+|+. .+..+++.++.+|++
T Consensus 479 sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~~~~~~--~~~~~f~~---~hP~qp~e~~qG~l~~i~e~q~~l~ 552 (954)
T PRK05367 479 SETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAAAEMIP--ITWPEFAN---LHPFAPAEQAAGYRELIDQLEAWLA 552 (954)
T ss_pred CHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHHHHHHH--HhCccccc---cCCCChHHHHHHHHHHHHHHHHHHH
Confidence 445788887777655432 23554 3333332222222 22222211 23333 346789999999999
Q ss_pred HHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCC----cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 150 RLWELENNEYWGYITNCGTEGNLHGILVGREV--FPD----GILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 150 ~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~----~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
+++|++. ..+..++|++|++.+++++|.. .++ .+|++++..|.|..+.+.++|++++.++++.+|.+|+++
T Consensus 553 eltG~d~---~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~ 629 (954)
T PRK05367 553 EITGYDA---VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDD 629 (954)
T ss_pred HHHCCCC---EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHH
Confidence 9999973 2444567889998888777742 233 479999999999999999999999999999889999999
Q ss_pred HHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEE
Q 011842 224 FKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSV 303 (476)
Q Consensus 224 Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~ 303 (476)
|+++++++..+++.|+++++++..+..+|+++|+++|+++|+ |+|||+|+.++...... ....++|++++
T Consensus 630 L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~-----~v~VDgA~~~al~~l~~-----pg~~GADi~~~ 699 (954)
T PRK05367 630 LRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGG-----QVYLDGANMNAQVGLAR-----PGDIGADVSHL 699 (954)
T ss_pred HHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCC-----EEEEECcChhhccCCCC-----hhhcCCCEEEe
Confidence 999998765567788999998884445899999999999999 99999999755443221 11234999999
Q ss_pred cCCCCCCCCCCce-----eEEeehhhhhhhcCCc---cccCCCCCcccCCCCC---hhHHHHHHHHHHhChhcHHHHHHH
Q 011842 304 SGHKFVGCPMPCG-----VQITRMEHINVLSSNV---EYLASRDATIMGSRNG---HAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 304 s~hK~l~~p~~~G-----~l~~~~~~~~~l~~~~---~yl~~~~~~~~~sr~~---~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
++|||+++|.++| +++++..+...+.... ..... ......+.+. ..++..|..++.+|.+|++++.++
T Consensus 700 s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~-~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~ 778 (954)
T PRK05367 700 NLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGET-GIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEV 778 (954)
T ss_pred cCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCC-CcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 9999998887755 9999876543332211 01000 0011111111 234558899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEee-cC---Ce--eEEEEe-cCC-----cHHHhh-----ceeecc----cCCEEEEEEcCCC
Q 011842 373 CLRNAHYLKDRLLDAGISAML-NE---LS--STVVFE-RPQ-----DEEFVR-----RWQLAC----QGNIAHVVVMPNV 431 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~-~~---~~--~iv~f~-~~~-----~~~~~~-----~~~l~~----~~~~lRv~~~~~~ 431 (476)
...+|+|+.++|++. +.... .+ .. .++.++ .+. ..++.+ ++..+. ..+.+|++++..+
T Consensus 779 ~~~~A~Yl~~~L~~~-~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~ 857 (954)
T PRK05367 779 AILNANYIAKRLKDH-YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESE 857 (954)
T ss_pred HHHHHHHHHHHHHhh-cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecC
Confidence 999999999999873 22222 11 12 333332 111 122322 233332 2568999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 011842 432 TIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 432 T~edid~~~~~l~~~~~~~~~ 452 (476)
|++|||+|+++|+++.+++.+
T Consensus 858 s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 858 SKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=228.25 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC--
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG-- 217 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g-- 217 (476)
..+++.+.+++++|.+ .+++|+|+|+++..++.+... |++.|+++..+|++...+++..|++++.++.+.++
T Consensus 45 ~~~~l~~~la~~~g~~----~i~~~~g~t~al~~~l~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 118 (361)
T cd06452 45 PIKDFHHDLAEFLGMD----EARVTPGAREGKFAVMHSLCE--KGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEY 118 (361)
T ss_pred hHHHHHHHHHHHcCCc----eEEEeCCHHHHHHHHHHHhcC--CCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCc
Confidence 4456667788899983 288999999999998888765 89999999999999998899999999999998654
Q ss_pred ccCHHHHHHHHHcCC----CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 218 EIDCADFKAKLLQNK----DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~----~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
.+|+++|++++.+.. .++.+|+++++++++|.+.|+++|+++|+++|+ ++|+|+||+.+..+ ++
T Consensus 119 ~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~-----~vivD~a~~~g~~~-------~~ 186 (361)
T cd06452 119 HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGV-----PLLLNGAYTVGRMP-------VS 186 (361)
T ss_pred ccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCC-----eEEEECCcccCCcC-------CC
Confidence 899999999997421 245688889999999999999999999999999 99999999865443 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCccc-CCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIM-GSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~-~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..+ .+|+++.++||++++|.++|++++++++++.+.....++.....+.. ++.+......+++++... .+ ..+.++
T Consensus 187 ~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~-~~~~~~ 264 (361)
T cd06452 187 GKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV-KE-RVKRWD 264 (361)
T ss_pred HHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHH-HH-HHHHHH
Confidence 222 37999999999999899999999998877666443333221111212 222222344455555443 12 234455
Q ss_pred HHHHHHHHHHHHHHhc-CCeEee--cCCeeEEEEecCCc-----------HHHh-----hceee--cccCCEEEEEEcCC
Q 011842 372 KCLRNAHYLKDRLLDA-GISAML--NELSSTVVFERPQD-----------EEFV-----RRWQL--ACQGNIAHVVVMPN 430 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~-g~~~~~--~~~~~iv~f~~~~~-----------~~~~-----~~~~l--~~~~~~lRv~~~~~ 430 (476)
+..++++++.+.|++. |+..+. +..++++.|..+.- .++. +++.. +..++.+|+++ ..
T Consensus 265 ~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g 343 (361)
T cd06452 265 EEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YG 343 (361)
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cC
Confidence 5567789999999998 665442 23456777765410 0121 12221 12235678877 44
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENR 447 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~ 447 (476)
.|++|++.++++|+++.
T Consensus 344 ~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 344 LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 79999999999998653
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=226.98 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchH-HHHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYS-VFKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S-~~~~~~~~G~~v~~v~~~ 214 (476)
..++.+++++.+++++|.+++...+++|+|||+|+..++.+... +++ +|+++...|.+ +...++..|++++.++.+
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~--~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~ 110 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP--KDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTG 110 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC--CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC
Confidence 45677788999999999975433588999999999988877654 555 45555555555 357788899999999998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+++.+|+++|++++.++++ +.+|.+++..|+||.+.|+++|+++|++||+ ++++|++|+.+..+ +++
T Consensus 111 ~~~~~d~~~l~~~l~~~~~-~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~-----~livD~~~~~g~~~-------~~~ 177 (363)
T TIGR02326 111 EVEPPDVVEVEAILAADPA-ITHIALVHCETTTGILNPIEAVAKLAHRHGK-----VTIVDAMSSFGGIP-------IDI 177 (363)
T ss_pred CCCCCCHHHHHHHHhhCCC-ccEEEEEeecCCccccCcHHHHHHHHHHcCC-----EEEEEccccccCcc-------cch
Confidence 8889999999999987543 2367777889999999999999999999999 99999998765544 344
Q ss_pred cc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-cc-ccC---------CCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 295 KK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VE-YLA---------SRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 295 ~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~-yl~---------~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
.+ .+|++++++|||+++|.|+|+++++++.++.+... .. |+. .......++.+....+++..+++.+.
T Consensus 178 ~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~ 257 (363)
T TIGR02326 178 AELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELE 257 (363)
T ss_pred hhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 33 38999999999999999999999998866543211 11 110 00011223444445566667777764
Q ss_pred hh-cHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--CeeE-EEEecCCc-----HHHh-----hceeecc----cCCEEE
Q 011842 363 YK-GFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSST-VVFERPQD-----EEFV-----RRWQLAC----QGNIAH 424 (476)
Q Consensus 363 ~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~i-v~f~~~~~-----~~~~-----~~~~l~~----~~~~lR 424 (476)
.+ +++++.+++.++++++++.|++.|+..+.++ .+++ +.|..++. ..+. +++.+.. ..+.+|
T Consensus 258 ~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iR 337 (363)
T TIGR02326 258 KEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFR 337 (363)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEE
Confidence 44 5888999999999999999999987655433 2443 44555431 2222 2333322 246899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~ 447 (476)
++++.++|.+|+++++++|+++.
T Consensus 338 i~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 338 IGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99988999999999999998865
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=230.16 Aligned_cols=292 Identities=16% Similarity=0.150 Sum_probs=206.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcC----CeEE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYR----MECV 209 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G----~~v~ 209 (476)
.+..++++++++++++++|.+.+ ..+++++|+.+...++.++ ....++++|+++++.|.++..++..+| ++++
T Consensus 60 ~g~~~~~~~~~~~la~~~g~~~~--~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~ 137 (398)
T cd00613 60 QGRLQALFELQTMLCELTGMDVA--NASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVV 137 (398)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcc--ceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEE
Confidence 36679999999999999998753 3667776665544444443 331248999999999999998888887 8999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCH-HHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL-DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l-~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.+++++++.+|+++|++++.++++ +|++++++ ++|.+.|+ ++|+++|++||+ |+++|++|+.+..+....
T Consensus 138 ~v~~~~~~~~d~~~l~~~i~~~t~---~viv~~~~-~~G~~~~~l~~i~~la~~~g~-----~livD~~~~~~~~~~~~~ 208 (398)
T cd00613 138 EVPSDEGGTVDLEALKEEVSEEVA---ALMVQYPN-TLGVFEDLIKEIADIAHSAGA-----LVYVDGDNLNLTGLKPPG 208 (398)
T ss_pred EeccCCCCCcCHHHHHHhcCCCeE---EEEEECCC-CCceecchHHHHHHHHHhcCC-----EEEEEeccccccCCCChH
Confidence 999987788999999999976553 77788775 78999885 999999999999 999999986544331111
Q ss_pred CCCCCCcccccEEEEcCCCCCCC----CCCceeEEeehhhhhhhcCCcc------------ccC-C---------CCCcc
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGC----PMPCGVQITRMEHINVLSSNVE------------YLA-S---------RDATI 342 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~----p~~~G~l~~~~~~~~~l~~~~~------------yl~-~---------~~~~~ 342 (476)
...+|+++.++|||++. ++++|++++++++++.+..... |+. . .....
T Consensus 209 ------~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~ 282 (398)
T cd00613 209 ------EYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSN 282 (398)
T ss_pred ------HcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccc
Confidence 12389999999999932 4778899998877665422100 000 0 00000
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC-----cHHHhh----
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ-----DEEFVR---- 412 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~-----~~~~~~---- 412 (476)
..+.+.......|+++..++.++++++.++..+++++++++|++.+...... +...+++|..+. ..++.+
T Consensus 283 ~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~ 362 (398)
T cd00613 283 ICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALID 362 (398)
T ss_pred ceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhh
Confidence 1111122344566667777888999999999999999999999987654211 223556676653 122222
Q ss_pred -ceeecc----cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 413 -RWQLAC----QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 413 -~~~l~~----~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
++.+.. ..+.+|++++.++|++|||+++++|
T Consensus 363 ~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 363 GGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 222222 4578999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=233.49 Aligned_cols=349 Identities=14% Similarity=0.118 Sum_probs=227.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHhccc-----ccccC--CCCcCCcchHHHHHHHHH--hhCCCCCCcccCccchhhHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERT-----KHHLG--YPYNLDFDYGALAQLQHF--SINNLGDPFIESNYGVHSRQFEVG 143 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~-----~~~~g--~p~~~~~~~~~l~~~l~~--~~n~~g~~~~~~~~~~~~~~le~~ 143 (476)
++|+.+ +.+++++.+.+....+. ..++| .|++ ..+....+.+.. .++.. .++.. ....+..+...+
T Consensus 42 ~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~--~~p~~~~~~~~~~~~~~~y-~~~~~-~~~~g~~~~~~e 116 (447)
T PRK00451 42 DLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDH--YIPAVVDHIISRSEFYTAY-TPYQP-EISQGTLQAIFE 116 (447)
T ss_pred CCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCC--cCcHHHHHHHhchhHHHhc-CCCCC-ccchHHHHHHHH
Confidence 577765 88899999988774442 12333 1211 112333333211 11110 01000 112245667777
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH----cCCeEEEEeCCCCCcc
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM----YRMECVKVDCLISGEI 219 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~----~G~~v~~v~~~~~g~~ 219 (476)
..+++++++|++.+ .+++|+|||+++..++++.+ ..+++.|++++..|.++.++++. .|++++.+|++++ .+
T Consensus 117 ~~~~la~l~g~~~~--~v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~ 192 (447)
T PRK00451 117 YQTMICELTGMDVA--NASMYDGATALAEAALMAVR-ITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VT 192 (447)
T ss_pred HHHHHHHHhCCCcc--eEEecCcHHHHHHHHHHHHH-hcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CC
Confidence 77899999999864 48899999986655554433 23889999999999998887665 5999999999877 99
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEE--ecCcccccccccccCCCCCCccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHC--DGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhv--D~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|+++|+++|+++++ +|+++++ |++|.++|+++|+++|+++|+ |+++ |.+..+ ... ......
T Consensus 193 d~~~l~~~i~~~t~---~v~l~~p-n~tG~v~~l~~I~~~a~~~~~-----~~iv~~d~~~~g-~~~-------~~~~~~ 255 (447)
T PRK00451 193 DLEALEAAVDDDTA---AVVVQYP-NFFGVIEDLEEIAEIAHAGGA-----LFIVGVDPVSLG-LLK-------PPGEYG 255 (447)
T ss_pred CHHHHHHhcCCCeE---EEEEECC-CCCCeeCCHHHHHHHHHHCCC-----EEEEEcChHHhc-cCC-------CcccCC
Confidence 99999999976654 7778877 889999999999999999999 9998 544222 111 011224
Q ss_pred ccEEEEcCCCC----CCCCCCceeEEeehhhhhhhcCC-----------cccc----------CCCC-CcccCCCCChhH
Q 011842 298 IGSVSVSGHKF----VGCPMPCGVQITRMEHINVLSSN-----------VEYL----------ASRD-ATIMGSRNGHAP 351 (476)
Q Consensus 298 ~Dsi~~s~hK~----l~~p~~~G~l~~~~~~~~~l~~~-----------~~yl----------~~~~-~~~~~sr~~~~~ 351 (476)
+|+++.++||| .++++++|++++++++++.+... ..|. .... ....+++....+
T Consensus 256 ~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (447)
T PRK00451 256 ADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNA 335 (447)
T ss_pred CCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHH
Confidence 89999999997 34467999999998876654210 0111 0000 001111111222
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecC-CcHHHhhcee---------e----
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERP-QDEEFVRRWQ---------L---- 416 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~-~~~~~~~~~~---------l---- 416 (476)
+..+.+++.++.++++++.++..++++++.++|++.+...+.... ...+++..+ ...++.+++. .
T Consensus 336 ~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~L~~~gi~~~~~~~~~~ 415 (447)
T PRK00451 336 LAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPAEEVNEALLEKGILGGYDLGRYY 415 (447)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCHHHHHHHHHhcCCCCCccccccc
Confidence 445555677888899999999999999999999998644443222 233345543 3333332211 1
Q ss_pred cccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 417 ACQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 417 ~~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+...+.+|++++.++|++|||+|+++|+++.
T Consensus 416 ~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 416 PELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 1113589999999999999999999998763
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=230.59 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-CCcEEEecCCCchHHH----HHHHHcCCeE----E
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-PDGILYASRESHYSVF----KAARMYRMEC----V 209 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-p~~~Vl~s~~~H~S~~----~~~~~~G~~v----~ 209 (476)
.++++..+ + +++|.+++ ..+||+|+|+++..++....... ++++|+++..+|.|.. ..++..|+++ +
T Consensus 71 ~~~~~~~~-~-~l~g~~~~--~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 146 (406)
T TIGR01814 71 TLDESLLK-L-RLVGAKED--EVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMV 146 (406)
T ss_pred hhhhhhcc-c-cccCCCCC--cEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceE
Confidence 33444433 4 89998754 48999999999888877653211 2347889999998843 3456678887 5
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.++.+.+|.+|++++++.++..+.++.+|++++.++.+|.+.|+++|+++|+++|+ +++||++|+.+..|
T Consensus 147 ~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~-----~~~vD~aq~~G~~~----- 216 (406)
T TIGR01814 147 QIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGA-----LVGFDLAHAVGNVP----- 216 (406)
T ss_pred EeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCC-----EEEEEcccccCCcc-----
Confidence 67766678899999999987544445589999999999999999999999999999 99999999988776
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhh-cCCccccCC---------------CCCcccCCCCChhHH
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVL-SSNVEYLAS---------------RDATIMGSRNGHAPI 352 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l-~~~~~yl~~---------------~~~~~~~sr~~~~~l 352 (476)
+++.+ ++|++++++|||+++|+| |+++++.+....+ +....|... .+.-..|+.+....+
T Consensus 217 --id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~ 293 (406)
T TIGR01814 217 --LDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVA 293 (406)
T ss_pred --cccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHH
Confidence 45444 499999999999987778 6666655432222 111111100 000112455544555
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-C----CeEeecC----CeeEEEEecC-CcHHHh-----hceeec
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-G----ISAMLNE----LSSTVVFERP-QDEEFV-----RRWQLA 417 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g----~~~~~~~----~~~iv~f~~~-~~~~~~-----~~~~l~ 417 (476)
.+.++++.+...|++++.++..++++++++.|++. + +..+.+. ..++++|..+ +...+. +++.+.
T Consensus 294 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~ 373 (406)
T TIGR01814 294 ALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGD 373 (406)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEe
Confidence 66677887767789999999999999999999875 2 4333322 1357888776 433332 233333
Q ss_pred cc-CCEEEEEE-cCCCCHHHHHHHHHHHHHHH
Q 011842 418 CQ-GNIAHVVV-MPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 418 ~~-~~~lRv~~-~~~~T~edid~~~~~l~~~~ 447 (476)
.. .+.+|+++ +.++|++|||+++++|+++.
T Consensus 374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 22 36899998 57999999999999998763
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=227.83 Aligned_cols=295 Identities=14% Similarity=0.069 Sum_probs=208.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCc------chHHHHHHHH----HhhCCCCCCcccCccchh---hHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDF------DYGALAQLQH----FSINNLGDPFIESNYGVH---SRQ 139 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~------~~~~l~~~l~----~~~n~~g~~~~~~~~~~~---~~~ 139 (476)
.+|++|-+-+.|...+.++-...+++ +|.+.+. .++.+-.=.. .++...|+-....|-..+ ...
T Consensus 29 ~~p~~g~~~~~i~~~l~~l~~~~~~~---~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~~~q~ka~gss~~~~ 105 (444)
T TIGR03531 29 KIPEEGWDDETIELFLHELSVMDTNN---FPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLVAPQPKAAGSSLLYK 105 (444)
T ss_pred cCCccCCCHHHHHHHHHHHhcCCcCC---CccccCcCcccceeechhhhhcccceecCCCCcccccccCccccCccHHHH
Confidence 68899988888877777665444442 3433322 2222222111 222223332222222222 568
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCch-hHHHHHHHHHHhhC-CCcEEEecCCCchHHHHHHHHcCCeEEEEeC---C
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGT-EGNLHGILVGREVF-PDGILYASRESHYSVFKAARMYRMECVKVDC---L 214 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt-~An~~al~aa~~~~-p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~---~ 214 (476)
+..++.+++++++|.+.- ..+++++||| +++.+++.+++... +++.|+++..+|.|+.+++.++|++++.+++ +
T Consensus 106 l~~~~e~~~~~~~G~~~~-~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~ 184 (444)
T TIGR03531 106 LTNKLVKDFLKLLGLRSI-KSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDG 184 (444)
T ss_pred HHHHHHHHHHHHcCCCCC-CEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecC
Confidence 899999999999999732 2388899999 78888888877532 5789999999999999999999999999995 3
Q ss_pred CCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+++.+|+++|+++|++.+ +.+.+|+.+.+++..|..+|+++|+++|++||+ |+|+|+||+.... ...+...-.
T Consensus 185 ~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI-----~lIvDaAyg~~~~-~~~~~~~~g 258 (444)
T TIGR03531 185 DELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDI-----PHIVNNAYGLQSN-KYMELINKA 258 (444)
T ss_pred cCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCC-----EEEEECcCcCcCh-hhhhhhhcc
Confidence 568899999999998765 333344444445666789999999999999999 9999999985321 111110011
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
... .+|++++++||++++|.++|+++++++ +.+.+.. .|.. .......+.+|+++..+|.++++++++
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~--~y~g--------~~~~s~~~~~~~~ll~~G~~g~~~li~ 328 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISK--SYPG--------RASASPSLDVLITLLSLGSKGYLELLK 328 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHH--hccC--------CCCChHHHHHHHHHHHhCHHHHHHHHH
Confidence 112 379999999999999888888888655 5555432 2321 112234678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 011842 372 KCLRNAHYLKDRLLDA 387 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~ 387 (476)
+..++++++.+.|++.
T Consensus 329 ~~~~~a~~l~~~L~~l 344 (444)
T TIGR03531 329 ERKEMYKYLKELLQKL 344 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=243.04 Aligned_cols=303 Identities=14% Similarity=0.106 Sum_probs=228.9
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCch----hHHHHHHHHHHhhCCCc----EEEecCCCchHHHHHHHHcC
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGT----EGNLHGILVGREVFPDG----ILYASRESHYSVFKAARMYR 205 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt----~An~~al~aa~~~~p~~----~Vl~s~~~H~S~~~~~~~~G 205 (476)
..+..++..++++++++++|++. +.|++++| +|+++++++..+. +|+ +|+++..+|.+....+.+.|
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~~~----v~f~pnaga~ge~a~~~vi~~~~~~-~Gd~~r~~vli~~~aH~sn~a~a~~~G 637 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGFDS----FSLQPNAGAAGEYAGLMVIRAYHLS-RGDHHRNVCIIPVSAHGTNPASAAMCG 637 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCe----EEEcCCCcHHHHHHHHHHHHHHHhc-cCCCCCCEEEeCCCcCccCHHHHHHCC
Confidence 34566888899999999999953 89999999 8999998888652 355 89999999999999999999
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 206 MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 206 ~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
++++.||++++|.+|+++|+++|++++++..+|++++++|..|..+|+++|+++|+++|+ ++++|+|+..+....
T Consensus 638 ~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Ga-----lv~vDgAq~~a~~~l 712 (993)
T PLN02414 638 MKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGG-----QVYMDGANMNAQVGL 712 (993)
T ss_pred CEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCC-----EEEEEecCHHhccCc
Confidence 999999999999999999999999765555699999999999999999999999999999 999999996544221
Q ss_pred cccCCCCCCcccccEEEEcCCCCCCCCCC-----ceeEEeehhhhhhhcCCc-----cccCCCCCcccCCCCC------h
Q 011842 286 VKKAPKVSFKKPIGSVSVSGHKFVGCPMP-----CGVQITRMEHINVLSSNV-----EYLASRDATIMGSRNG------H 349 (476)
Q Consensus 286 ~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~-----~G~l~~~~~~~~~l~~~~-----~yl~~~~~~~~~sr~~------~ 349 (476)
.. ....++|+++++.|||++.|.+ +|++++++++...++... .++.....+-.|+++. .
T Consensus 713 ~~-----p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al 787 (993)
T PLN02414 713 TS-----PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSAL 787 (993)
T ss_pred CC-----ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHH
Confidence 11 1123499999999999987765 999999988765543221 1111111122355432 2
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cC--C---eeEEEEe-cC----C-cHHHhh-----
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NE--L---SSTVVFE-RP----Q-DEEFVR----- 412 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~--~---~~iv~f~-~~----~-~~~~~~----- 412 (476)
..+..|..+..+|.+|+++..++.+.+++|++++|.+ ++.... .+ . -.++.++ .+ . ..++.+
T Consensus 788 ~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~ 866 (993)
T PLN02414 788 ILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDY 866 (993)
T ss_pred HHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHc
Confidence 3456778888999999999999999999999999987 333222 21 1 1223333 11 1 122222
Q ss_pred ceeec----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 413 RWQLA----CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 413 ~~~l~----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++..+ ...+.+|++.+...|++|||+|+++|+++.+++.+
T Consensus 867 Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 867 GFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred CcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 22222 23678999999999999999999999999998875
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=217.88 Aligned_cols=294 Identities=15% Similarity=0.147 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEE-ecCCCchH-HHHHHHHcCCeEEEEeCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY-ASRESHYS-VFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl-~s~~~H~S-~~~~~~~~G~~v~~v~~~~ 215 (476)
.++.+++++.+++++|.+++...+++++|||+++..++..... +++.++ ++...|.+ +...++..|++++.++.+.
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~ 107 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP--RDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE 107 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC--CCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC
Confidence 4778889999999999986433577899999999998887654 555544 44444443 5677888999999999887
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
++.+|+++|++.+.+++ +..+++.+++.|++|.+.|+++|+++|++||+ ++++|++++.+..+ +++.
T Consensus 108 ~~~~d~~~l~~~l~~~~-~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~-----~livD~~~s~g~~~-------~~~~ 174 (355)
T TIGR03301 108 YEPPDLNRIEEALAADP-DITHVATVHHETTTGILNPLEAIAKVARSHGA-----VLIVDAMSSFGAIP-------IDIE 174 (355)
T ss_pred CCCCCHHHHHHHHHhCC-CceEEEEEecCCcccchhHHHHHHHHHHHcCC-----EEEEEeccccCCcc-------cchh
Confidence 78999999999998654 33466677889999999999999999999999 99999988654433 3333
Q ss_pred c-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCC---------CCCcccCCCCChhHHHHHHHHHHhChh
Q 011842 296 K-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLAS---------RDATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 296 ~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~---------~~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
+ .+|+++.++|||+++|.|+|+++++++.++.+.. ...|..+ ......++.+.....++..+++.+..+
T Consensus 175 ~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~ 254 (355)
T TIGR03301 175 ELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAE 254 (355)
T ss_pred hcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHc
Confidence 3 3899999999999888999999999987665531 1111110 001112233333344556677766556
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--ee-EEEEecCC----c-HHHh-----hceeeccc----CCEEEEE
Q 011842 365 G-FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--SS-TVVFERPQ----D-EEFV-----RRWQLACQ----GNIAHVV 426 (476)
Q Consensus 365 g-~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~-iv~f~~~~----~-~~~~-----~~~~l~~~----~~~lRv~ 426 (476)
+ +++..++..++++++.+.|++.|+..+.++. .+ ++.|..+. + .++. +++.+... .+.+|++
T Consensus 255 g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis 334 (355)
T TIGR03301 255 GGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIG 334 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEe
Confidence 5 8889999999999999999998876444332 23 34565553 1 1222 22333221 2689999
Q ss_pred EcCCCCHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~ 446 (476)
++.++|++|++++++.|+++
T Consensus 335 ~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 335 TIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999864
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=217.59 Aligned_cols=299 Identities=15% Similarity=0.118 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v~~~ 214 (476)
..+...++++.+++++|.+++....++|++||.++..++.+... +++.|++....++.. ...++..|++++.+|.+
T Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~--~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~ 112 (368)
T PRK13479 35 FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP--RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTG 112 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECC
Confidence 34677889999999999865434577899999999998888754 777777766776654 47788899999999998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.++.+|+++|+++++++++ ..+|.+++++|++|.+.|+++|.++|+++|+ ++++|++++.+..+ ++.
T Consensus 113 ~~~~~d~~~l~~~l~~~~~-~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~-----~livDa~~~~g~~~-------~~~ 179 (368)
T PRK13479 113 EDEPPDAAEVEAALAADPR-ITHVALVHCETTTGILNPLDEIAAVAKRHGK-----RLIVDAMSSFGAIP-------IDI 179 (368)
T ss_pred CCCCCCHHHHHHHHHhCCC-CcEEEEEcccCccccccCHHHHHHHHHHcCC-----EEEEEcccccCCcc-------ccc
Confidence 7788999999999976542 3367788999999999999999999999999 99999887644333 343
Q ss_pred cc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccc-cCC--------CCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 295 KK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEY-LAS--------RDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 295 ~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~y-l~~--------~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
.+ .+|++++++|||+++|.|+|+++++++.++.+... ..| +.. .......+.+....+.+.++++.+..
T Consensus 180 ~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~ 259 (368)
T PRK13479 180 AELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEE 259 (368)
T ss_pred cccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 33 38999999999999899999999998876655321 111 110 00111124443444566677776644
Q ss_pred h-cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--e-eEEEEecCC-----cHHHh-----hceeeccc----CCEEEE
Q 011842 364 K-GFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--S-STVVFERPQ-----DEEFV-----RRWQLACQ----GNIAHV 425 (476)
Q Consensus 364 ~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~iv~f~~~~-----~~~~~-----~~~~l~~~----~~~lRv 425 (476)
. ++++++++..++++++++.|++.|+..+.++. + .++.|..+. ..++. +++.+... .+.+|+
T Consensus 260 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRi 339 (368)
T PRK13479 260 EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRI 339 (368)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEE
Confidence 4 57888899999999999999999876544322 2 234555432 12222 33334221 357899
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+++.++|.+|+++++++|+++.+++
T Consensus 340 s~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 340 GCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9888999999999999999887653
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=221.93 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
..+..++++.+++++|.+. .++++||++|+..++.+... |+|.|++++++|.++..++++.+.+.+.++
T Consensus 82 ~~~~~~le~~ia~~~g~~~----~ii~~~~~~a~~~~~~~l~~--~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~----- 150 (393)
T TIGR01822 82 QDIHKELEAKIAAFLGTED----TILYASCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYA----- 150 (393)
T ss_pred hHHHHHHHHHHHHHhCCCc----EEEECchHHHHHHHHHHhCC--CCCEEEEeccccHHHHHHHHhcCCceEEeC-----
Confidence 4556667778889999753 78889999999977776654 999999999999999999999888776554
Q ss_pred ccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccC-CCC
Q 011842 218 EIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKA-PKV 292 (476)
Q Consensus 218 ~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~-~~~ 292 (476)
.+|+++|+++|.+. +.++.+|++++..+++|.+.|+++|+++|++||+ |+++|++|+.+.+.. .... ...
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~-----~li~De~~~~g~~~~~~~~~~~~~ 225 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDA-----LVMVDECHATGFLGPTGRGSHELC 225 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCC-----EEEEECCccccCcCCCCCchHHhc
Confidence 36999999999853 1144577777788999999999999999999999 999999997544321 1110 012
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
+....+|+++.++||+++ +++.|+++.++++++.+.. ...|. +.++.+.....+...+++.+ +..++..+
T Consensus 226 ~~~~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~~~al~~~--~~~~~~~~ 296 (393)
T TIGR01822 226 GVMGRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYL------FSNSLPPAVVGASIKVLEML--EASNELRD 296 (393)
T ss_pred CCCCCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccce------ecCCCCHHHHHHHHHHHHHH--hcCHHHHH
Confidence 222248999999999987 4688999988877665532 12222 12232211122233344333 33566778
Q ss_pred HHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeec--------ccCCEEEEEEcCCCCHHH
Q 011842 372 KCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLA--------CQGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~--------~~~~~lRv~~~~~~T~ed 435 (476)
+..++++++.+.|++.|+... ++..+++.+..++ ..++. ++..+. .....+|++++..+|++|
T Consensus 297 ~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~ed 375 (393)
T TIGR01822 297 RLWANTRYFRERMEAAGFDIK-PADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQ 375 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHH
Confidence 889999999999998876533 3344555555443 22232 222222 122468999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRST 449 (476)
Q Consensus 436 id~~~~~l~~~~~~ 449 (476)
|++++++|+++.++
T Consensus 376 i~~~~~~l~~~~~~ 389 (393)
T TIGR01822 376 LDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=219.88 Aligned_cols=250 Identities=16% Similarity=0.104 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCC-cEEEecCCCchHHHHHH---HHcCCeEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPD-GILYASRESHYSVFKAA---RMYRMECVK 210 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~-~~Vl~s~~~H~S~~~~~---~~~G~~v~~ 210 (476)
..++.+++++++++++|.+++ .+++|+|+|+++..++.+.... .++ +.|+++..+|+|+.... +..|++++.
T Consensus 40 ~~~~~~~~r~~la~~~g~~~~--~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~ 117 (353)
T TIGR03235 40 AKKAVERARKQVAEALGADTE--EVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTY 117 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCCC--eEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEE
Confidence 446778899999999999754 4999999999999888776532 244 78999999999876543 446999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.++++.+|+++|++++.+++ .+|++++++|++|.+.|+++|.++|+++|+ |+|+|++|+.+..+
T Consensus 118 v~~~~~~~~d~~~l~~~l~~~~---~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~-----~~ivD~a~~~g~~~------ 183 (353)
T TIGR03235 118 LPVDESGRIDVDELADAIRPDT---LLVSIMHVNNETGSIQPIREIAEVLEAHEA-----FFHVDAAQVVGKIT------ 183 (353)
T ss_pred EccCCCCcCCHHHHHHhCCCCC---EEEEEEcccCCceeccCHHHHHHHHHHcCC-----EEEEEchhhcCCcc------
Confidence 9998889999999999997654 488899999999999999999999999999 99999999877665
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
++..+ .+|++++++|||+ +|.++|+++++++........+.+.... .....++.+....+++..+++.+ .++.+
T Consensus 184 -~~~~~~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~ 260 (353)
T TIGR03235 184 -VDLSADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQ 260 (353)
T ss_pred -ccccccCCCEEEeehhhcC-CCCceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHH
Confidence 34443 3999999999996 5999999999987432211122222111 11123555545556666677665 35788
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecC
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERP 405 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~ 405 (476)
++.++..++++++++.|++.|+..+.++. ..++.|..+
T Consensus 261 ~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~ 301 (353)
T TIGR03235 261 AWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSID 301 (353)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeC
Confidence 89999999999999999887776553332 346667655
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=220.85 Aligned_cols=280 Identities=16% Similarity=0.135 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCcc
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~ 219 (476)
...++.+.+++++|.+. .++|+||++||..++.+... +++.|+++...|.|+...++..|++++.++. .
T Consensus 100 ~~~~le~~la~~~g~~~----~~~~~sG~~An~~~l~~l~~--~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~ 168 (407)
T PRK07179 100 PKPQFEKKLAAFTGFES----CLLCQSGWAANVGLLQTIAD--PNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-----N 168 (407)
T ss_pred HHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHhCC--CCCEEEEECCcCHHHHHHHHHCCCeEEEecC-----C
Confidence 44555567888888863 68899999999999988765 7899999999999999999999998877654 4
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-cccc-CCCCCCccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKK-APKVSFKKP 297 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~-~~~~~~~~~ 297 (476)
|+++|+++|.+++ +.+|++.++.+++|.+.|+++|.++|++||+ ++|+|++|+.+... .... ...++....
T Consensus 169 d~~~l~~~l~~~~--~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~-----~livDea~~~g~~g~~g~g~~~~~~~~~~ 241 (407)
T PRK07179 169 DVDHLRRQIERHG--PGIIVVDSVYSTTGTIAPLADIVDIAEEFGC-----VLVVDESHSLGTHGPQGAGLVAELGLTSR 241 (407)
T ss_pred CHHHHHHHHHhcC--CeEEEECCCCCCCCccccHHHHHHHHHHcCC-----EEEEECcccccCcCCCCCchHHhcCCCCC
Confidence 9999999997642 3478788899999999999999999999999 99999999754331 1111 001222234
Q ss_pred ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRN 376 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~ 376 (476)
+|+++.|+||+++. ++|++++++++++.+.... .+. +.++........+.++++.+ ....+..++..++
T Consensus 242 vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~------~~~t~~~~~~aa~~aal~~~--~~~~~~~~~l~~~ 311 (407)
T PRK07179 242 VHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAI------FSSTLLPHEIAGLEATLEVI--ESADDRRARLHAN 311 (407)
T ss_pred CCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCee------eCCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHH
Confidence 79999999999973 5999999887655442211 111 12222222222333445544 2235677889999
Q ss_pred HHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh-----hceee-----cc---cCCEEEEEEcCCCCHHHHHHHH
Q 011842 377 AHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV-----RRWQL-----AC---QGNIAHVVVMPNVTIDKLDDFL 440 (476)
Q Consensus 377 a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~-----~~~~l-----~~---~~~~lRv~~~~~~T~edid~~~ 440 (476)
+++|++.|++.|+... ..++++.+..+.. ..+. +++.. +. ..+.+|++++..+|++||++++
T Consensus 312 ~~~l~~~L~~~g~~v~--~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~ 389 (407)
T PRK07179 312 ARFLREGLSELGYNIR--SESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVL 389 (407)
T ss_pred HHHHHHHHHHcCCCCC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHH
Confidence 9999999999876433 3356666665431 2221 22221 11 2468999999999999999999
Q ss_pred HHHHHHHHH
Q 011842 441 NELIENRST 449 (476)
Q Consensus 441 ~~l~~~~~~ 449 (476)
++|+++.++
T Consensus 390 ~~l~~~~~~ 398 (407)
T PRK07179 390 EVCREARDE 398 (407)
T ss_pred HHHHHHHHh
Confidence 999988765
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=238.90 Aligned_cols=339 Identities=15% Similarity=0.102 Sum_probs=230.9
Q ss_pred ccCCCCcCCcchHHHHHHHHHhh-CCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHH
Q 011842 99 HLGYPYNLDFDYGALAQLQHFSI-NNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILV 177 (476)
Q Consensus 99 ~~g~p~~~~~~~~~l~~~l~~~~-n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~a 177 (476)
|+-|..........+.+++.... +..+++...+..+..+.++.+++++.+++++|.+++++.++||+|+|+|+.++...
T Consensus 37 YLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~ 116 (805)
T PLN02724 37 YLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGET 116 (805)
T ss_pred eEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHH
Confidence 44433332223345555554332 22333332233344567788899999999999976555689999999998877655
Q ss_pred HHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEeCC--------CCCccCH--HHHHHHHHc----C---CCCcEE
Q 011842 178 GREVFPDGILYASRESHYSVFK---AARMYRMECVKVDCL--------ISGEIDC--ADFKAKLLQ----N---KDKPAI 237 (476)
Q Consensus 178 a~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~--------~~g~~D~--~~Le~~l~~----~---~~~p~~ 237 (476)
.. ..++++|+++...|.|+.. .++..|++++.++.+ ..+.+|+ ++|++.+.. . +.+..+
T Consensus 117 l~-~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~L 195 (805)
T PLN02724 117 FP-WSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNL 195 (805)
T ss_pred CC-CCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcce
Confidence 42 3478999999999988653 334459999999876 3455554 667776421 0 122349
Q ss_pred EEEeeCCCccccccCHHHHHHHHHHhCCC--C-CceEEEEecCcccccccccccCCCCCCccc-ccEEEEcCCCCCCCCC
Q 011842 238 INVNIGTTVKGAVDDLDLVIQTLEESGFT--Q-DRFYIHCDGALFGLMMPFVKKAPKVSFKKP-IGSVSVSGHKFVGCPM 313 (476)
Q Consensus 238 vv~t~gtt~tG~id~l~~I~~ia~~~g~~--~-~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~-~Dsi~~s~hK~l~~p~ 313 (476)
|++++.++.+|.+.|+++|.++++..+.. . ...++++|+||+.+..| +++.+. +|++++|+|||++.|.
T Consensus 196 Va~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~p-------iDv~~~~~Dfl~~S~HK~~GgP~ 268 (805)
T PLN02724 196 FAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSP-------PDLSRYPADFVVVSFYKIFGYPT 268 (805)
T ss_pred EEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCC-------CChhhcCCCEEEEecceeccCCC
Confidence 99999999999999999876555533100 0 01279999999988877 666554 9999999999999999
Q ss_pred CceeEEeehhhhhhhcCCccccCCC-------------------CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 314 PCGVQITRMEHINVLSSNVEYLASR-------------------DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 314 ~~G~l~~~~~~~~~l~~~~~yl~~~-------------------~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
|+|+|++++++.+.+.. .|.++. ..--.||.+....+++.++++.+...|++++.++..
T Consensus 269 G~G~L~vr~~~~~~l~p--~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~ 346 (805)
T PLN02724 269 GLGALLVRRDAAKLLKK--KYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTW 346 (805)
T ss_pred CceEEEEehhhhhhhcC--CccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999886554421 122110 011246676666777888888887778999999999
Q ss_pred HHHHHHHHHHHhcC------CeEeecC---------CeeEEEEecCCc-------H---HHhh--ceee----cc-----
Q 011842 375 RNAHYLKDRLLDAG------ISAMLNE---------LSSTVVFERPQD-------E---EFVR--RWQL----AC----- 418 (476)
Q Consensus 375 ~~a~~l~~~L~~~g------~~~~~~~---------~~~iv~f~~~~~-------~---~~~~--~~~l----~~----- 418 (476)
+++++|.+.|++.+ ...+..+ ..++|+|...+. . .+.. ++.+ .|
T Consensus 347 ~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~ 426 (805)
T PLN02724 347 ALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGAC 426 (805)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHH
Confidence 99999999999874 2333322 247888875421 1 1111 1111 00
Q ss_pred -------------------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 -------------------------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 -------------------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
..+.+|+|+.+++|.+|||+|+++|++..
T Consensus 427 ~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 427 AKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred HHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 12679999999999999999999998865
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=214.60 Aligned_cols=325 Identities=13% Similarity=0.057 Sum_probs=218.4
Q ss_pred HHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhH
Q 011842 91 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEG 170 (476)
Q Consensus 91 ~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~A 170 (476)
++.++.+.|+|++..... .+++.+.+....++.++ ++...+......++++.+++++|.+. .+++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~v-~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~la~~~~~~~----~iv~~sg~~a 73 (349)
T cd06454 3 VLNFCSNDYLGLANHPEV-IEAAKEALDKYGVGAGG----SRLISGTSDLHEELEEELAEFHGKEA----ALVFSSGYAA 73 (349)
T ss_pred ceecccCCccccCCCHHH-HHHHHHHHHHhCCCCCC----cCeecCCchHHHHHHHHHHHHhCCCC----EEEeccHHHH
Confidence 456777889997766332 24444444432222221 11111334677788888999999853 6777888999
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC--CCcEEEEEeeCCCccc
Q 011842 171 NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK--DKPAIINVNIGTTVKG 248 (476)
Q Consensus 171 n~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~--~~p~~vv~t~gtt~tG 248 (476)
+..++.++.. ||+.|+++++.|+++...++..|++++.++. +|++++++++.+.. .++.+|+++++++++|
T Consensus 74 ~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG 146 (349)
T cd06454 74 NDGVLSTLAG--KGDLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDG 146 (349)
T ss_pred HHHHHHHhcC--CCCEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCC
Confidence 9988877664 8999999999999999999999999888763 48889999997642 3456888888899999
Q ss_pred cccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-ccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhh
Q 011842 249 AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 326 (476)
Q Consensus 249 ~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~ 326 (476)
.+.|+++|+++|++||+ ++++|++|+.+.++ .......+... ...|+++.++||+++. ..|+++.+++..+
T Consensus 147 ~~~~~~~i~~~~~~~~~-----~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~gG~i~~~~~~~~ 219 (349)
T cd06454 147 DIAPLPELVDLAKKYGA-----ILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA--VGGYIAGSKELID 219 (349)
T ss_pred CccCHHHHHHHHHHcCC-----EEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc--cCCEEECCHHHHH
Confidence 99999999999999999 99999999754332 11111112222 2479999999999985 3388888877655
Q ss_pred hhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC
Q 011842 327 VLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP 405 (476)
Q Consensus 327 ~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~ 405 (476)
.+... ..|. ..++.+......+.++++.... ..+..++..++++++.+.|++.|+..+.++...+..+..+
T Consensus 220 ~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~ 291 (349)
T cd06454 220 YLRSYARGFI------FSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGD 291 (349)
T ss_pred HHHHhchhhh------ccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCC
Confidence 44321 1121 1122222223344455554422 4667888889999999999988765544444444444433
Q ss_pred C---cHHHh-----hceeecc--------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 406 Q---DEEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 406 ~---~~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+ ..++. ++..+.. .++.+|++++.++|+++|++++++|+++
T Consensus 292 ~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 292 DPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred ChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 12222 2222211 1368999999999999999999999865
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=220.28 Aligned_cols=324 Identities=12% Similarity=0.105 Sum_probs=221.0
Q ss_pred HHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc
Q 011842 88 YRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCG 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg 167 (476)
.++.+.+++++|+| +...+. +.+.....+...|.....++.-.+...+++++.+.+++++|.+. .+++++|
T Consensus 101 ~r~~l~FsSndYLG----L~~~p~-v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~----all~sSG 171 (476)
T PLN02955 101 FKKLLLFSGNDYLG----LSSHPT-ISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKED----CLVCPTG 171 (476)
T ss_pred CceEEEeeccCccC----CCCCHH-HHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCc----EEEECCh
Confidence 34567788888999 444322 22222222233333333333333456788888888999999875 8899999
Q ss_pred hhHHHHHHHHHHh------------hCCCcEEEecCCCchHHHHHHHHc----CCeEEEEeCCCCCccCHHHHHHHHHcC
Q 011842 168 TEGNLHGILVGRE------------VFPDGILYASRESHYSVFKAARMY----RMECVKVDCLISGEIDCADFKAKLLQN 231 (476)
Q Consensus 168 t~An~~al~aa~~------------~~p~~~Vl~s~~~H~S~~~~~~~~----G~~v~~v~~~~~g~~D~~~Le~~l~~~ 231 (476)
..||+.++.+... ..+++.|++++..|.|+..++++. +++++.++++ |+++|+++|+..
T Consensus 172 y~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~ 246 (476)
T PLN02955 172 FAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSC 246 (476)
T ss_pred HHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhC
Confidence 9999998877520 125678999999999999999988 5788889988 999999999876
Q ss_pred CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCC-CCCCcccccEEEEcCCCCC
Q 011842 232 KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAP-KVSFKKPIGSVSVSGHKFV 309 (476)
Q Consensus 232 ~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~-~~~~~~~~Dsi~~s~hK~l 309 (476)
++...+|++....++.|.+.|+++|.++|++||+ ++++|+||+.+++ +..++.. .+.....+|+++.++.|.+
T Consensus 247 ~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga-----~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~ 321 (476)
T PLN02955 247 KMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGF-----LLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA 321 (476)
T ss_pred CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCc-----EEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch
Confidence 5545566666669999999999999999999999 9999999986654 3222221 1222234899999999998
Q ss_pred CCCCCceeEEeehhhhhhhc-CCccccCCCCCcccCCCCChhHH--HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh
Q 011842 310 GCPMPCGVQITRMEHINVLS-SNVEYLASRDATIMGSRNGHAPI--FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386 (476)
Q Consensus 310 ~~p~~~G~l~~~~~~~~~l~-~~~~yl~~~~~~~~~sr~~~~~l--~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 386 (476)
++ ..|+++++++.++.+. ....|+++. +...++ +..++++.+- . .+.+.++++++.++|++.
T Consensus 322 G~--~GGfi~gs~~~~~~l~~~~~~~ifSt--------alpp~~aaa~laal~l~~-~-~~~~r~~L~~n~~~fr~~--- 386 (476)
T PLN02955 322 GC--HGGFIACSKKWKQLIQSRGRSFIFST--------AIPVPMAAAAYAAVVVAR-K-EKWRRKAIWERVKEFKAL--- 386 (476)
T ss_pred hc--cCceeecHHHHHHHHHHhCCCCeecc--------cccHHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHh---
Confidence 74 4677777776655442 233444332 111111 1222333331 1 235678888999999874
Q ss_pred cCCeEeecCCeeEEEEecCCcHH---H-----hhceee--------cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 387 AGISAMLNELSSTVVFERPQDEE---F-----VRRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 387 ~g~~~~~~~~~~iv~f~~~~~~~---~-----~~~~~l--------~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.|+.. .++|+.+..++... + .+++.+ +....++|++++..+|++|||+++++|.++...
T Consensus 387 ~G~~~----~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 387 SGVDI----SSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred cCCCC----CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 35431 36777777664321 1 233433 334568999999999999999999999888654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=220.53 Aligned_cols=293 Identities=13% Similarity=0.064 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEc---CCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH----------
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYIT---NCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM---------- 203 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t---~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~---------- 203 (476)
...+|+.+++.+++++|.++++ .+++ ++||+||+.++.+... |++.|++++..|.+....+..
T Consensus 78 ~~~iE~~ar~~~a~lf~a~~~~--~~~~~~~~sgt~an~~v~~al~~--~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~ 153 (452)
T PTZ00094 78 VDKIENLCQKRALEAFGLDPEE--WGVNVQPYSGSPANFAVYTALLQ--PHDRIMGLDLPSGGHLTHGFYTAKKKVSATS 153 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCccc--ceeecCCCchHHHHHHHHHHhcC--CCCEEEecccccCCcccccccccccccccce
Confidence 3566667889999999997543 4455 7899999998888754 899999999999876543321
Q ss_pred cCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 204 YRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 204 ~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
.++++..++++.+|.+|+++|++++.+.. |.+|+++ .+.+|.+.|+++|.++|+++|+ ++|||++|+.+.+
T Consensus 154 ~~~~~~~~~~~~~g~id~~~L~~~l~~~~--~~lvi~~--~s~~g~~~di~~I~~i~~~~ga-----~l~vDaaq~~G~i 224 (452)
T PTZ00094 154 IYFESLPYQVNEKGLIDYDKLEELAKAFR--PKLIIAG--ASAYPRDIDYKRFREICDSVGA-----YLMADIAHTSGLV 224 (452)
T ss_pred eeeeeeecccCCCCCcCHHHHHHHHHHhC--CCEEEEe--CCCCCCccCHHHHHHHHHHcCC-----EEEEeccchhccc
Confidence 12345566677779999999999997532 2255442 3468999999999999999999 9999999998877
Q ss_pred cccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 284 PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
+..... ... ..+|++++++|||+++|.+ |+++++++..+.+.... ..++ ..+.|+.+.....++.++++.+.
T Consensus 225 ~~~~~~--~~~-~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~~~---p~~~G~~~~~~iaal~~al~~~~ 297 (452)
T PTZ00094 225 AAGVLP--SPF-PYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEAVF---PGLQGGPHNHQIAAIAVQLKEVQ 297 (452)
T ss_pred cCCCCC--CCC-CCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhccccC---CCCCCCchHHHHHHHHHHHHHHh
Confidence 532211 111 2589999999999998997 88888765433221110 1111 12334444344556667777775
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-Ce--eEEEEecCC-c-HHH---hh--ceeec-----c-----cCCE
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LS--STVVFERPQ-D-EEF---VR--RWQLA-----C-----QGNI 422 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~--~iv~f~~~~-~-~~~---~~--~~~l~-----~-----~~~~ 422 (476)
..+++++.++..+++++|.+.|++.|+.+..+. .+ .++.|..++ + ..+ .+ ++.+. + ..+.
T Consensus 298 ~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~ 377 (452)
T PTZ00094 298 SPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSG 377 (452)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCe
Confidence 667888899999999999999988887655422 12 344454332 2 222 12 33332 2 2368
Q ss_pred EEEEEcCCCC----HHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVT----IDKLDDFLNELIENRST 449 (476)
Q Consensus 423 lRv~~~~~~T----~edid~~~~~l~~~~~~ 449 (476)
+|++++..+| ++||+++++.|.++++.
T Consensus 378 vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 378 VRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred EEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 9999977776 99999999999998864
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=214.13 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=216.8
Q ss_pred HHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchh
Q 011842 90 KTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTE 169 (476)
Q Consensus 90 ~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~ 169 (476)
+.+...+++|+|... ++.....+.. .++..|.....++.-.+......++.+.+++++|.+. .+++++|++
T Consensus 46 ~~~~~~sn~ylgl~~----~p~v~~a~~~-~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~----~l~~~sG~~ 116 (402)
T TIGR01821 46 DVTVWCSNDYLGMGQ----HPEVLQAMHE-TLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKES----ALVFTSGYV 116 (402)
T ss_pred eEEEeEccCcCCCCC----CHHHHHHHHH-HHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCe----EEEECchHH
Confidence 356778888999443 3233333322 2222221111111111223556677788889898642 678888999
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccc
Q 011842 170 GNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKG 248 (476)
Q Consensus 170 An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG 248 (476)
||..++.++....++++|+++...|.++...++..|+++..++++ |+++|++.+.... +++.+|+++++.+++|
T Consensus 117 an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G 191 (402)
T TIGR01821 117 ANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMDG 191 (402)
T ss_pred HHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCCC
Confidence 999999887654478888888889999999999999988777654 8889999887432 2456888889999999
Q ss_pred cccCHHHHHHHHHHhCCCCCceEEEEecCccccc-ccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhh
Q 011842 249 AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM-MPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 326 (476)
Q Consensus 249 ~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~-~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~ 326 (476)
.+.|+++|.++|++||+ ++++|+||+.+. .+...... .......+|++..++.|.++.+ .|+++.++++++
T Consensus 192 ~~~~l~~i~~l~~~~~~-----~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~--GG~i~~~~~~~~ 264 (402)
T TIGR01821 192 DIAPIEEICDLADKYGA-----LTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV--GGYIAASRKLID 264 (402)
T ss_pred CccCHHHHHHHHHHcCC-----EEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC--CceeecCHHHHH
Confidence 99999999999999999 999999998443 23222211 1122223688888999999852 277877877665
Q ss_pred hhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC
Q 011842 327 VLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP 405 (476)
Q Consensus 327 ~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~ 405 (476)
.+.. ...|. +..+.+.....+..++++.+... ....++..+++++|.+.|++.|+..+ ++.++++.+..+
T Consensus 265 ~l~~~~~~~~------~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~i~~~ 335 (402)
T TIGR01821 265 AIRSYAPGFI------FTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEALGIPVI-PNPSHIVPVIIG 335 (402)
T ss_pred HHHHhCcCce------ecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeC
Confidence 5532 11221 11122211222233444443222 44556667899999999999886533 445667666554
Q ss_pred Cc---HHH----h-h-ceeec--------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 406 QD---EEF----V-R-RWQLA--------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 406 ~~---~~~----~-~-~~~l~--------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.. .++ . + ++.+. ....++|++++..+|++|||+++++|+++.+++
T Consensus 336 ~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 336 DAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 31 222 1 2 33332 123689999999999999999999999987653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-23 Score=203.73 Aligned_cols=301 Identities=15% Similarity=0.146 Sum_probs=238.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
....+.+++.+.+..+++.+. ....+++++||.|+-.++..... ||+.|++....-++ |.+.++.+|++++.+..
T Consensus 35 ~F~~~~~~~~~~L~~v~~t~~-~~~~ll~gsGt~amEAav~sl~~--pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~ 111 (383)
T COG0075 35 DFVGIMKEVLEKLRKVFGTEN-GDVVLLSGSGTLAMEAAVASLVE--PGDKVLVVVNGKFGERFAEIAERYGAEVVVLEV 111 (383)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CcEEEEcCCcHHHHHHHHHhccC--CCCeEEEEeCChHHHHHHHHHHHhCCceEEEeC
Confidence 466888999999999999873 23356667888888888877776 89999888887766 67899999999999998
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
.+.-.+|+++++++|++++. ..+|.++|..|.||...|+++|+++|++||. +++||++-+.+..+ ++
T Consensus 112 ~wg~~v~p~~v~~~L~~~~~-~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~-----l~iVDaVsS~Gg~~-------~~ 178 (383)
T COG0075 112 EWGEAVDPEEVEEALDKDPD-IKAVAVVHNETSTGVLNPLKEIAKAAKEHGA-----LLIVDAVSSLGGEP-------LK 178 (383)
T ss_pred CCCCCCCHHHHHHHHhcCCC-ccEEEEEeccCcccccCcHHHHHHHHHHcCC-----EEEEEecccCCCcc-------cc
Confidence 87778999999999996643 3478899999999999999999999999999 99999998755555 55
Q ss_pred Cccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC--Cc-cccCC-------CC-CcccCCCCChhHHHHHHHHHHh
Q 011842 294 FKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS--NV-EYLAS-------RD-ATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 294 ~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~--~~-~yl~~-------~~-~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
..+. +|++...++|.+++|+|.|++.++++.++.+.. .+ -|+.- .+ ..+..|.+....+++..+++.+
T Consensus 179 vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i 258 (383)
T COG0075 179 VDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLI 258 (383)
T ss_pred hhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 5554 999999999999999999999999987665532 22 34331 11 3455666666667788889999
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--e-eEEEEecCCc---HHH----hhceee-------cccCCEEE
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--S-STVVFERPQD---EEF----VRRWQL-------ACQGNIAH 424 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~iv~f~~~~~---~~~----~~~~~l-------~~~~~~lR 424 (476)
..+|++++++|.+.+++++++.+++.|+..+..+. + .+.++..|.+ ... .+++.+ +..+..+|
T Consensus 259 ~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifR 338 (383)
T COG0075 259 LEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFR 338 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEE
Confidence 89999999999999999999999999998776332 3 4455666642 111 223332 23457999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
|..|-+.+.+|+...+.+|+.+.+++..
T Consensus 339 IGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 339 IGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred EecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999887643
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=211.34 Aligned_cols=331 Identities=14% Similarity=0.106 Sum_probs=217.8
Q ss_pred HHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchh
Q 011842 90 KTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTE 169 (476)
Q Consensus 90 ~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~ 169 (476)
+.+...+++|+|++.++ .....+.. .+...+.....++...+......++.+.+++++|.+. .+++++|++
T Consensus 47 ~~~~~~s~dylgl~~~p----~v~~a~~~-~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~----~~~~~sG~~ 117 (407)
T PRK09064 47 EVTVWCSNDYLGMGQHP----KVIEAMIE-ALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEA----ALVFTSGYV 117 (407)
T ss_pred eEEEEECCCCcCCCCCH----HHHHHHHH-HHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCc----EEEECcHHH
Confidence 35677788899955543 22222222 2222221111111111224566777788888888542 677788899
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccc
Q 011842 170 GNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKG 248 (476)
Q Consensus 170 An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG 248 (476)
||..++..++...+++.|+.+...|.|+...++..|+++..++.+ |+++|++.++..+ .++.+|+++++.+++|
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~~G 192 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSMDG 192 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCCCc
Confidence 999988876654578888888889999998999899988777764 8899999987432 3456888888999999
Q ss_pred cccCHHHHHHHHHHhCCCCCceEEEEecCcccc-cccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhh
Q 011842 249 AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL-MMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 326 (476)
Q Consensus 249 ~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~-~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~ 326 (476)
.+.|+++|.++|++||+ ++++|+||+.+ +.+...... .....+..|+++.+++|.++.+ .|+++.++++++
T Consensus 193 ~~~~l~~i~~l~~~~~~-----~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~--GG~~~~~~~~~~ 265 (407)
T PRK09064 193 DIAPIAEICDLADKYNA-----LTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM--GGYIAGSAALVD 265 (407)
T ss_pred cccCHHHHHHHHHHcCC-----EEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc--CceEecCHHHHH
Confidence 99999999999999999 99999999833 333222111 1122223688888999998742 388888877665
Q ss_pred hhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC
Q 011842 327 VLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP 405 (476)
Q Consensus 327 ~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~ 405 (476)
.+.. ...|.+ ..+.+........++++.+... ....++..+++++|.+.|++.|+.. .++.++++.+..+
T Consensus 266 ~l~~~~~~~~~------t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~-~~~~~~iv~i~~~ 336 (407)
T PRK09064 266 AVRSYAPGFIF------TTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAAGIPV-MPNESHIVPVMVG 336 (407)
T ss_pred HHHHhCccccc------cCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCEEEEEeC
Confidence 5422 112221 1122212223334455544322 3446788899999999999988653 3455677776654
Q ss_pred Cc---HHH----h-h-ceeec--------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 406 QD---EEF----V-R-RWQLA--------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 406 ~~---~~~----~-~-~~~l~--------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.. .++ . + ++.+. ....++|++++..+|++||++++++|+++.+++
T Consensus 337 ~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 337 DPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred CHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 31 122 2 2 33332 123679999999999999999999999987653
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=212.21 Aligned_cols=289 Identities=14% Similarity=0.055 Sum_probs=208.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcC-CchhHHHHHHHHHHhhCC-CcEEEecCCCchHHH-H-HHHHcCC-eEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITN-CGTEGNLHGILVGREVFP-DGILYASRESHYSVF-K-AARMYRM-ECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~-ggt~An~~al~aa~~~~p-~~~Vl~s~~~H~S~~-~-~~~~~G~-~v~~ 210 (476)
...++.+++++.+++++|.+. ++..++++ +||.++..++..... + +..|++ .-.|.+-. . +++.+|+ +++.
T Consensus 45 ~f~~~~~~~r~~l~~l~~~~~-~~~v~~~~gs~T~~~~~~~~~l~~--~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~ 120 (378)
T PRK03080 45 PVKALLKRVIEGTRELLSLPE-GYEVGIVPGSDTGAWEMALWSLLG--ARRVDHLA-WESFGSKWATDVVKQLKLEDPRV 120 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CceEEEECCchHHHHHHHHHhcCC--CCcceEEE-eCHHHHHHHHHHHhhcCCCCceE
Confidence 456888899999999999963 34577775 888888877766532 3 445554 45776633 3 3467899 9999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+.++.+|+++++ . ++ .|.+++.+|.+|.+.|+++|++ ++||+ +++||++++.+..|
T Consensus 121 ~~~~~g~~~d~~~i~----~-~~---~V~~~h~~t~tG~~~pi~~I~~--~~~g~-----~~vVDa~qs~G~~p------ 179 (378)
T PRK03080 121 LEADYGSLPDLSAVD----F-DR---DVVFTWNGTTTGVRVPVARWIG--ADREG-----LTICDATSAAFALP------ 179 (378)
T ss_pred eccCCCCCCCHhhcC----C-CC---CEEEEecCCccceeccchhhcc--ccCCC-----eEEEecccccccCC------
Confidence 998777778877643 2 33 5888999999999999999999 88999 99999999988887
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC------ccccCCCC------Cccc----CCCCChhHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN------VEYLASRD------ATIM----GSRNGHAPIFL 354 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~------~~yl~~~~------~~~~----~sr~~~~~l~~ 354 (476)
+++.+ +|++.+++|||+++|.|+|+++++++.++.+... +.|+.-.. ..+. ++.+......+
T Consensus 180 -idv~~-iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l 257 (378)
T PRK03080 180 -LDWSK-LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDY 257 (378)
T ss_pred -CCHHH-CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHH
Confidence 66654 7999999999999999999999999876554221 11221000 0111 22222233445
Q ss_pred HHHHHHhChh-cHHHHHHHHHHHHHHHHHHHHhcCCeEeec--C--Ce-eEEEEecCC-----cHHHh-----hceeecc
Q 011842 355 WYTLNRKGYK-GFQKEVQKCLRNAHYLKDRLLDAGISAMLN--E--LS-STVVFERPQ-----DEEFV-----RRWQLAC 418 (476)
Q Consensus 355 ~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~--~--~~-~iv~f~~~~-----~~~~~-----~~~~l~~ 418 (476)
..+++.+... |++++.++..++++++++.|++.+...+.. + .+ .+++|..++ +..+. ++..+..
T Consensus 258 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~ 337 (378)
T PRK03080 258 LDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDI 337 (378)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeecc
Confidence 6688888776 899999999999999999999988543331 2 13 477887765 11221 1222211
Q ss_pred -----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 419 -----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 419 -----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+.+|++++.++|.+|||+|+++|+++.+.+.
T Consensus 338 g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 338 EPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred ccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 246899999999999999999999999877543
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=208.27 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=204.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+++|...++.++++|+|+++++..++.+... |++.|++++++|..+...++.+|++++.+|.+.
T Consensus 62 G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~ 139 (382)
T PRK06108 62 GIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVG--PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDF 139 (382)
T ss_pred CCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcC--CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCC
Confidence 456999999999999989543345699999999999888887765 899999999999999999999999999999863
Q ss_pred ---CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccc-cccc
Q 011842 216 ---SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKK 288 (476)
Q Consensus 216 ---~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~ 288 (476)
++.+|+++|++.+.++++ ++++++++|+||.+- ++++|+++|+++|+ |+++|++|+.+.+. ....
T Consensus 140 ~~~~~~~d~~~l~~~~~~~~~---~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~li~De~y~~~~~~~~~~~ 211 (382)
T PRK06108 140 GGGGWTLDLDRLLAAITPRTR---ALFINSPNNPTGWTASRDDLRAILAHCRRHGL-----WIVADEVYERLYYAPGGRA 211 (382)
T ss_pred CCCCccCCHHHHHHhcCccce---EEEEECCCCCCCcccCHHHHHHHHHHHHHCCc-----EEEEehhhhhhccCCCCCC
Confidence 346999999998865443 777888999999775 57889999999999 99999999877653 1111
Q ss_pred CCCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 289 APKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 289 ~~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
.+..+... .-.++..+++|.++ .++++|++++++++++.+.....|.. .+ ...+.+.++...+ +.
T Consensus 212 ~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~q~a~~~~l~~~~ 281 (382)
T PRK06108 212 PSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNT-------SC---VAQFVQRAAVAALDEGE 281 (382)
T ss_pred CCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcc-------cC---CChHHHHHHHHHHhCCh
Confidence 11122221 13467788999764 68899999998887665532222211 11 1123333333333 23
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCC-eeEEEEecCC---cHHH----hh--ceeecc-------cCCEEEE
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNEL-SSTVVFERPQ---DEEF----VR--RWQLAC-------QGNIAHV 425 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~-~~iv~f~~~~---~~~~----~~--~~~l~~-------~~~~lRv 425 (476)
+.+++..++..++++++.+.|++. ++. +.++. ..++.+..+. ..++ .+ +..+.. ..+++|+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri 360 (382)
T PRK06108 282 DFVAELVARLRRSRDHLVDALRALPGVE-VAKPDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRW 360 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEE
Confidence 345777888888999999999886 443 33444 4444555542 2222 22 233311 2468999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~ 447 (476)
++.. +.++++..++.|.+..
T Consensus 361 s~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 361 CFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred EecC--CHHHHHHHHHHHHHHH
Confidence 9886 8999999999887754
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=214.43 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=215.2
Q ss_pred HHHHhcccccccCCCCcCCcchHHHHHHH-HHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc
Q 011842 89 RKTLMERTKHHLGYPYNLDFDYGALAQLQ-HFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCG 167 (476)
Q Consensus 89 ~~~~~~~~~~~~g~p~~~~~~~~~l~~~l-~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg 167 (476)
++.++.++++|+|...+.......+.+.+ .+..+..+....+ +.....+++++.+++++|.+. .+++++|
T Consensus 100 ~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~-----g~~~~~~ele~~lA~~~g~~~----ai~~~~G 170 (489)
T PLN02483 100 RRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDG-----GTTKLHRELEELVARFVGKPA----AIVFGMG 170 (489)
T ss_pred ceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCcccccc-----CCcHHHHHHHHHHHHHhCCCc----EEEECCH
Confidence 34667788889995543222222333333 3332222222222 334677778888999999653 5556667
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHc-------CCCCc---EE
Q 011842 168 TEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ-------NKDKP---AI 237 (476)
Q Consensus 168 t~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~-------~~~~p---~~ 237 (476)
+.+|+.++.+... ||+.|++++++|.|+..+++..|++++.++++ |+++|++.|++ ++.+| .+
T Consensus 171 ~~an~~~i~al~~--~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~l 243 (489)
T PLN02483 171 YATNSTIIPALIG--KGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKII 243 (489)
T ss_pred HHHHHHHHHHhCC--CCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEE
Confidence 8888877776655 99999999999999999999999999999976 67888777753 12112 34
Q ss_pred EEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccC-CCCCCc-ccccEEEEcCCCCCCCCCC
Q 011842 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKA-PKVSFK-KPIGSVSVSGHKFVGCPMP 314 (476)
Q Consensus 238 vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~-~~~~~~-~~~Dsi~~s~hK~l~~p~~ 314 (476)
|+++...+++|.+.++++|+++|++||+ ++++|++|+.+.. +..+.. +.+... ..+|+++.+++|+++. .
T Consensus 244 ivve~v~s~~G~~~~l~~I~~la~~~~~-----~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~- 316 (489)
T PLN02483 244 VIVEGIYSMEGELCKLPEIVAVCKKYKA-----YVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-C- 316 (489)
T ss_pred EEECCCCCCCCcccCHHHHHHHHHHcCC-----EEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-C-
Confidence 5454557999999999999999999999 9999999974332 111111 112222 2379999999999974 3
Q ss_pred ceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhC----hhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 315 CGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKG----YKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 315 ~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g----~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
.|+++.++++++.+... ..+.. .++.+........++++.+- .+...++++++.+++++|++.|++.|+
T Consensus 317 GG~i~~~~~li~~l~~~~~~~~~------~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~ 390 (489)
T PLN02483 317 GGYIAGSKELIQYLKRTCPAHLY------ATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGF 390 (489)
T ss_pred ceEEEcCHHHHHHHHHhCccccc------cCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCC
Confidence 48888888777665422 11211 11111111112223444331 122355678899999999999999987
Q ss_pred eEeecCCeeEEEEecCC---cHHHh-----hceeec--------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 390 SAMLNELSSTVVFERPQ---DEEFV-----RRWQLA--------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 390 ~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~--------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
....+..++++.+.... ...+. ++..+. .....+|++++..+|+||||+++++|+++.+.+
T Consensus 391 ~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 391 EVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred cccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 54434444555443322 11222 222221 122679999999999999999999999987665
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=208.34 Aligned_cols=331 Identities=15% Similarity=0.108 Sum_probs=215.5
Q ss_pred HHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCch
Q 011842 89 RKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGT 168 (476)
Q Consensus 89 ~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt 168 (476)
++.+++.+++|||...+. .....+ ...+...|.....++...+.....+++.+.+++++|.+. .+++++|+
T Consensus 45 ~~~~~~~sn~ylgl~~~p----~v~~a~-~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~----~~~~~SG~ 115 (406)
T PRK13393 45 REVTVWCSNDYLGMGQHP----AVLAAM-HEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEA----ALLFTSGY 115 (406)
T ss_pred ccEEEeecccccCCCCCH----HHHHHH-HHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCc----EEEeCCcH
Confidence 346778888899843332 222222 222222222111121111223567778888999998643 77788888
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCcc
Q 011842 169 EGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVK 247 (476)
Q Consensus 169 ~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~t 247 (476)
+||..++.+.....++++|+++...|.|+..+++..|.+++.++.+ |+++|++.+...+ .++.+|+++++++++
T Consensus 116 ~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~ 190 (406)
T PRK13393 116 VSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMD 190 (406)
T ss_pred HHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCC
Confidence 9999998865443478899999999999999999999988888764 8889998886432 234578888899999
Q ss_pred ccccCHHHHHHHHHHhCCCCCceEEEEecCccccc-ccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhh
Q 011842 248 GAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM-MPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 325 (476)
Q Consensus 248 G~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~-~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~ 325 (476)
|.+.|+++|.++|++||+ ++++|++|+.++ .+..... .........|++..++.|.++.+ .|+++.++++.
T Consensus 191 G~~~~l~~i~~l~~~~~~-----~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~--GG~~~~~~~~~ 263 (406)
T PRK13393 191 GDIAPIAEICDVAEKHGA-----MTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM--GGYITGSAALC 263 (406)
T ss_pred CchhCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc--CceeeCCHHHH
Confidence 999999999999999999 999999998443 3332211 01122223688888899999853 27777777765
Q ss_pred hhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEec
Q 011842 326 NVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER 404 (476)
Q Consensus 326 ~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~ 404 (476)
+.+... ..|. +.++.+........++++.+...+ ...++..+++++|.+.|++.|+..+ ++.++++.+..
T Consensus 264 ~~l~~~~~~~~------~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~v~~ 334 (406)
T PRK13393 264 DFIRSFASGFI------FTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKAGIPHL-PNPSHIVPVMV 334 (406)
T ss_pred HHHHHhCcCce------ecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCeEEEEe
Confidence 544321 1121 122222122333445555442222 2345667889999999998876433 44556666554
Q ss_pred CCc---HHH----hh--ceeec--------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 405 PQD---EEF----VR--RWQLA--------CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 405 ~~~---~~~----~~--~~~l~--------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++. ..+ .+ ++.+. .....+|++++..+|++|||+++++|+++.+.
T Consensus 335 ~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 335 GDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 431 122 22 44432 12368999999999999999999999988754
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=202.39 Aligned_cols=289 Identities=15% Similarity=0.080 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++.+.+++...+|.+......++++|+|+++..++.++.. +++.|+++.+.|.++..+++..|++++.++.++
T Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (350)
T cd00609 37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE 114 (350)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc
Confidence 567999999999999887543344589999999999988887765 789999999999999999999999999999987
Q ss_pred CCccCH--HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHH---HHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 SGEIDC--ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLV---IQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~g~~D~--~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I---~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.++. +.+++.+.+ .+.+|+++++++++|.+.|++++ .++|+++|+ ++++|++|+++.........
T Consensus 115 ~~~~~~~~~~~~~~~~~---~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~-----~~ivD~a~~~~~~~~~~~~~ 186 (350)
T cd00609 115 EGGFLLDLELLEAAKTP---KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGI-----LIISDEAYAELVYDGEPPPA 186 (350)
T ss_pred ccCCccCHHHHHhhcCc---cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCe-----EEEEecchhhceeCCccccc
Confidence 777765 555555433 34588888899999999886555 589999999 99999999876543221110
Q ss_pred CCCCcc-cccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
...... ..|++..++||+++ .+.++|++++++ ++.+.+.....+. ..+.+......++.+++... ++++
T Consensus 187 ~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~-~~~~ 258 (350)
T cd00609 187 LALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYT-------TSGPSTLSQAAAAAALDDGE-EHLE 258 (350)
T ss_pred ccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhc-------ccCCChHHHHHHHHHHhCcH-HHHH
Confidence 111222 37888999999998 678899999998 5665553322221 12222233333444444332 5778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecCCc--HH-H---hh--ceeec-c------cCCEEEEEEcCCC
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERPQD--EE-F---VR--RWQLA-C------QGNIAHVVVMPNV 431 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~~~--~~-~---~~--~~~l~-~------~~~~lRv~~~~~~ 431 (476)
+..++..++++++.+.|++.+...+ .+...+++++..+.. .. + .. ++.+. . ....+|++++..
T Consensus 259 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~- 337 (350)
T cd00609 259 ELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP- 337 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC-
Confidence 8889999999999999999876543 333445666665542 21 1 12 22222 1 456899999877
Q ss_pred CHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELI 444 (476)
Q Consensus 432 T~edid~~~~~l~ 444 (476)
++||++++++|+
T Consensus 338 -~~~i~~~~~al~ 349 (350)
T cd00609 338 -EEELEEALERLA 349 (350)
T ss_pred -HHHHHHHHHHhh
Confidence 999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=210.20 Aligned_cols=284 Identities=15% Similarity=0.158 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEeCCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYRMECVKVDCLI 215 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~~ 215 (476)
...+++++++++++| +. +.++|+|||+++..++.+... |++.|+++.++|+++.. .+++.|++++.++.+.
T Consensus 32 ~~~~~l~~~~a~~~g-~~---~~~~~~~gt~a~~~~~~~l~~--~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 105 (338)
T cd06502 32 PTTAKLEARAAELFG-KE---AALFVPSGTAANQLALAAHTQ--PGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN 105 (338)
T ss_pred HHHHHHHHHHHHHhC-CC---eEEEecCchHHHHHHHHHhcC--CCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC
Confidence 456677788999999 32 489999999999988887764 89999999999988654 3566899999999864
Q ss_pred CCccCHHHHHHHHHcCC----CCcEEEEEeeCCCccc--cccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 216 SGEIDCADFKAKLLQNK----DKPAIINVNIGTTVKG--AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~----~~p~~vv~t~gtt~tG--~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+.+|+++|++++.+.. .++.+|++++++++.| ..+++++|+++|++||+ ++|+|+||..+.......
T Consensus 106 -~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~-----~livDea~~~~~~~~~~~- 178 (338)
T cd06502 106 -GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGL-----PLHLDGARLANAAAALGV- 178 (338)
T ss_pred -CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCC-----eEeechHHHHHHHHhcCC-
Confidence 7899999999997531 2345788888887633 34678899999999999 999999985322110000
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
+.......+|+++.++|||++.|. .++++.++++++.+....... .++.+ ...+.+++++..+...++.++
T Consensus 179 ~~~~~~~~~d~~~~s~sK~~~~~~-g~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~a~~~~L~~~~~~~~ 249 (338)
T cd06502 179 ALKTYKSGVDSVSFCLSKGGGAPV-GAVVVGNRDFIARARRRRKQA-------GGGMR-QSGFLAAAGLAALENDLWLRR 249 (338)
T ss_pred CHHHHHhcCCEEEEeccccCCCcc-ceEEECCHHHHHHHHHHHHHh-------CCChh-hHHHHHHHHHHHhcCchHHHH
Confidence 101111247899999999999764 334556666665543211110 01111 223445555565554567778
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcH----HHh--------hceeec-ccCCEEEEEEcCCCCHHHH
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDE----EFV--------RRWQLA-CQGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~----~~~--------~~~~l~-~~~~~lRv~~~~~~T~edi 436 (476)
+++..++++++.+.|++.|+. ..++.++++.+..+... .+. +++.+. ...+.+|++++..+|++|+
T Consensus 250 ~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i 328 (338)
T cd06502 250 LRHDHEMARRLAEALEELGGL-ESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDV 328 (338)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-cccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHH
Confidence 889999999999999998873 44556788777764321 222 233332 2347899999999999999
Q ss_pred HHHHHHHHH
Q 011842 437 DDFLNELIE 445 (476)
Q Consensus 437 d~~~~~l~~ 445 (476)
++++++|++
T Consensus 329 ~~~~~~l~~ 337 (338)
T cd06502 329 DELLSALKA 337 (338)
T ss_pred HHHHHHHhc
Confidence 999999864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=208.37 Aligned_cols=287 Identities=14% Similarity=0.096 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
....++.+.+++++|.+. .+++++|++||..++.......++++|+++...|.++..+++..|++++.++.+
T Consensus 91 ~~~~~Le~~la~~~g~~~----~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~---- 162 (410)
T PRK13392 91 HPHVLLERELADLHGKES----ALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN---- 162 (410)
T ss_pred HHHHHHHHHHHHHhCCCC----EEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC----
Confidence 345577777888999642 566777789998888765433478899999889999988999999998887654
Q ss_pred cCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCC-CCCCc
Q 011842 219 IDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAP-KVSFK 295 (476)
Q Consensus 219 ~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~-~~~~~ 295 (476)
|.+++++.+.+. +.++.+|+++++++++|.+.|+++|.++|++||+ ++++|++|+.+.+ +...... .....
T Consensus 163 -d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~-----~livDea~~~g~~g~~g~g~~~~~~~~ 236 (410)
T PRK13392 163 -DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNA-----LTYVDEVHAVGLYGARGGGIAERDGLM 236 (410)
T ss_pred -CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCC-----EEEEECCccccCcCCCCCchhhhccCC
Confidence 677788877643 2345588899999999999999999999999999 9999999984433 2211110 11222
Q ss_pred ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+.+|+++.+++|+++.+. |+++.+++.++.+.. ...|.. ..+.+.....++.++++.+. ......+++.
T Consensus 237 ~~~div~~tlsK~~g~~G--G~~~~~~~~~~~l~~~~~~~~~------s~~~~~~~~~a~~aaL~~~~--~~~~~~~~~~ 306 (410)
T PRK13392 237 DRIDMIQGTLAKAFGCLG--GYIAASADLIDFVRSFAPGFIF------TTALPPAVAAGATAAIRHLK--TSQTERDAHQ 306 (410)
T ss_pred CCCcEEEEEChHhhhccc--chhhcCHHHHHHHHHhCcchhc------cCcCCHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence 347888889999988642 777777776654432 112221 11111112233334454432 2234557788
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh------hceeec--------ccCCEEEEEEcCCCCHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV------RRWQLA--------CQGNIAHVVVMPNVTIDKLD 437 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~------~~~~l~--------~~~~~lRv~~~~~~T~edid 437 (476)
++++++.+.|++.|+.. .++.++++.+..+.. .++. +++.+. ....++|++++..+|++|+|
T Consensus 307 ~~~~~l~~~L~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid 385 (410)
T PRK13392 307 DRVAALKAKLNANGIPV-MPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDID 385 (410)
T ss_pred HHHHHHHHHHHHcCCCC-CCCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHH
Confidence 89999999999988653 345566665544431 1222 233332 12368999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011842 438 DFLNELIENRSTW 450 (476)
Q Consensus 438 ~~~~~l~~~~~~~ 450 (476)
+++++|+++.+++
T Consensus 386 ~l~~aL~~~~~~~ 398 (410)
T PRK13392 386 ALVAALVAIWDRL 398 (410)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887653
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-22 Score=205.23 Aligned_cols=291 Identities=13% Similarity=0.040 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
.+..++++++.+++.+..|++.++. .+++|+|+++|+..++.+..+ ||+.|++.++.|..+...++..|++++.+++
T Consensus 91 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 91 FGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLIN--PGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 3577999999999999888764333 588999999999888877665 9999999999999999999999999999999
Q ss_pred CC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 214 LI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 214 ~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++ ++.+|++.|++.+.++++ +|+++++.|+||.+- .+++|+++|++|++ |+++|++|..+.+.. .+.
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~k---~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~-----~ii~De~Y~~l~~~~-~~~ 239 (413)
T PLN00175 169 RPPDFAVPEDELKAAFTSKTR---AILINTPHNPTGKMFTREELELIASLCKENDV-----LAFTDEVYDKLAFEG-DHI 239 (413)
T ss_pred CcccCCCCHHHHHHhcCcCce---EEEecCCCCCCCcCCCHHHHHHHHHHHHHcCc-----EEEEecccCccccCC-ccc
Confidence 74 578999999999976554 777889999999985 57889999999999 999999998765532 222
Q ss_pred CCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hh
Q 011842 290 PKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YK 364 (476)
Q Consensus 290 ~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~ 364 (476)
+...+.. .-.++..|+.|.++ +++++|++++++++++.+.....+.. +. ...+.++++...+. ..
T Consensus 240 s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~-----~~-----~s~~~Q~a~~~~l~~~~~ 309 (413)
T PLN00175 240 SMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLT-----FA-----TATPMQWAAVAALRAPES 309 (413)
T ss_pred ChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhcc-----CC-----CCHHHHHHHHHHHhCCHH
Confidence 2122211 12456678889886 88999999999887665533222211 11 11344555555442 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-----CcHHHhh------ceee-cc---------cCCEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-----QDEEFVR------RWQL-AC---------QGNIA 423 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-----~~~~~~~------~~~l-~~---------~~~~l 423 (476)
.+++..+++.++++++.+.|++.|+....++....++++.+ .+.++.+ +..+ +. ..+.+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~i 389 (413)
T PLN00175 310 YYEELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLV 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEE
Confidence 46777888888999999999998865433333444555432 1223322 2222 11 13589
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|+++. .++++++..++.|.+..+
T Consensus 390 Rls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 390 RFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred EEEEc--CCHHHHHHHHHHHHHHHh
Confidence 99987 379999999998887654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=205.48 Aligned_cols=291 Identities=11% Similarity=0.103 Sum_probs=206.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++++++.+.+|...+...+++|+|+++|+..++.+... |++.|++++++|.++...++..|++++.+|+++
T Consensus 71 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 148 (391)
T PRK08361 71 GIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE--EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLRE 148 (391)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCC
Confidence 567999999999988887654445699999999999988887755 899999999999999999999999999999975
Q ss_pred C--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 S--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ +.+|+++|++.+.++++ +|++++++|+||.+.| +++|+++|+++++ ++++|++|+.+.++.....+
T Consensus 149 ~~~~~~d~~~l~~~i~~~~~---~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~~~~~~ 220 (391)
T PRK08361 149 ENEFQPDPDELLELITKRTR---MIVINYPNNPTGATLDKEVAKAIADIAEDYNI-----YILSDEPYEHFLYEGAKHYP 220 (391)
T ss_pred ccCCCCCHHHHHHhcccccE---EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCe-----EEEEEcccccceeCCCCCCC
Confidence 3 57999999999976654 7778889999999988 8899999999999 99999999876543222222
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh----hc
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY----KG 365 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~----~g 365 (476)
........++++.|++|.++ .++++|++++++++++.+.....+.. ++- ..+.+.++...+.. +.
T Consensus 221 ~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~q~~~~~~l~~~~~~~~ 290 (391)
T PRK08361 221 MIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYII-------GNV---ASFVQIAGIEALRSKESWKA 290 (391)
T ss_pred HhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhc-------cCC---ChHHHHHHHHHhcCCcccHH
Confidence 22221224678899999886 67789999998877665432222211 111 12344444444422 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeE-EEEecCC----cHHHh----h--ceeecc-------cCCEEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSST-VVFERPQ----DEEFV----R--RWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~i-v~f~~~~----~~~~~----~--~~~l~~-------~~~~lRv~~ 427 (476)
+++..++..++++.+.+.|++.+...+.++..+. +.+..++ +.++. + ++.+.. ..+++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~ 370 (391)
T PRK08361 291 VEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISY 370 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEe
Confidence 5677777788889999999887433444455444 3334442 22322 1 333321 236899998
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
.. ++++++..++.|++..+
T Consensus 371 ~~--~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 371 AT--SKEKLIEAMERMEKALE 389 (391)
T ss_pred cC--CHHHHHHHHHHHHHHHh
Confidence 73 67788888887777654
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=192.04 Aligned_cols=327 Identities=13% Similarity=0.088 Sum_probs=229.9
Q ss_pred HHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc
Q 011842 88 YRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCG 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg 167 (476)
.++.++++.++|+|...++...-.....+- ..|.+..+..+-.+...+++.+...++++.+-++ .++.+++
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~ale-----eyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED----~ilypsc 136 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALE-----EYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED----TILYPSC 136 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHH-----HhCCCccceeEEecchHHHHHHHHHHHHHhCCCc----eEEeccc
Confidence 455677888889995444432212222222 3333333444445667999999999999988764 7888999
Q ss_pred hhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeC-CCc
Q 011842 168 TEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIG-TTV 246 (476)
Q Consensus 168 t~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~g-tt~ 246 (476)
-.||..++-+.+. |.+.|+.++..|.|+....++.. ..+.+|+-+|+..+.+..+...-+++|.+ .+|
T Consensus 137 fdANag~feail~--pedAvfSDeLNhASIIdGirLck---------ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSM 205 (417)
T KOG1359|consen 137 FDANAGAFEAILT--PEDAVFSDELNHASIIDGIRLCK---------RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSM 205 (417)
T ss_pred cccchHHHHHhcC--hhhhhhccccccchhhhhhHHHh---------hhccchhHHHHHHHHHhhhheEEEEEecceecc
Confidence 9999888888776 99999999999999999888765 34667999999988766443345666655 999
Q ss_pred cccccCHHHHHHHHHHhCCCCCceEEEEecCcccc-cccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhh
Q 011842 247 KGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL-MMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEH 324 (476)
Q Consensus 247 tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~-~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~ 324 (476)
.|.+.|+++|.+++++||+ ++.+|++|+-+ ..+..+......... .+|.++.+..|.+++ ...|+...+.++
T Consensus 206 DGdiaPl~ei~~La~kYga-----LlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGg-a~GGyttgp~~l 279 (417)
T KOG1359|consen 206 DGDIAPLEEISQLAKKYGA-----LLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGG-ASGGYTTGPKPL 279 (417)
T ss_pred CCCcccHHHHHHHHHhcCc-----EEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcC-CCCCCccCChhH
Confidence 9999999999999999999 99999999844 444444443333333 499999999999983 456777777777
Q ss_pred hhhh-cCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe
Q 011842 325 INVL-SSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE 403 (476)
Q Consensus 325 ~~~l-~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~ 403 (476)
++-+ .+..+|+++......--. .+.+ ++..+ -.-...+.+...+.++|++.++..|+. +....++|+.+.
T Consensus 280 i~llrqr~RpylFSnslppavV~---~a~k---a~dll--m~s~~~i~~~~a~~qrfr~~me~aGft-Isg~~hPI~pv~ 350 (417)
T KOG1359|consen 280 ISLLRQRSRPYLFSNSLPPAVVG---MAAK---AYDLL--MVSSKEIQSRQANTQRFREFMEAAGFT-ISGASHPICPVM 350 (417)
T ss_pred HHHHHhcCCceeecCCCChhhhh---hhHH---HHHHH--HhhHHHHHHHHHHHHHHHHHHHhcCce-ecCCCCCcccee
Confidence 6655 445678876532111000 0111 12221 223566777788899999999989975 444446666665
Q ss_pred cCCcH--------HHhhceee--------cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 404 RPQDE--------EFVRRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 404 ~~~~~--------~~~~~~~l--------~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+.. .+.+++.+ |...-++|+.++..+|+||||++++++.++.+.
T Consensus 351 lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 351 LGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred cccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 54421 12334442 456678999999999999999999999998764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=203.11 Aligned_cols=327 Identities=13% Similarity=0.041 Sum_probs=204.2
Q ss_pred HHhcccccccCCCCcCCcchHHHHHHHHHhhCC--CCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCch
Q 011842 91 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINN--LGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGT 168 (476)
Q Consensus 91 ~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~--~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt 168 (476)
.+++.+++|+|+........+.+..+..+..+. .|.....+..-.+..++.+++++.+++++|.+. .++.++|+
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~----~l~~~sG~ 81 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE----AFIVPSGY 81 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe----EEEECChH
Confidence 456778888887766544433333333332111 012222233223456888899999999999963 56667777
Q ss_pred hHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC---CCcEEEEEeeCCC
Q 011842 169 EGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK---DKPAIINVNIGTT 245 (476)
Q Consensus 169 ~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt 245 (476)
.+|+..+..... +++.|+++...|.|+..+++.+....+.++. .|+++|+++|++.. +...+|+++++++
T Consensus 82 ~a~~~~~~~~~~--~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s 154 (370)
T PRK05937 82 MANLGLCAHLSS--VTDYVLWDEQVHISVVYSLSVISGWHQSFRH-----NDLDHLESLLESCRQRSFGRIFIFVCSVYS 154 (370)
T ss_pred HHHHHHHHHhCC--CCCEEEEEhhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHhhhccCCCcEEEEEecCCC
Confidence 888643333222 6789999999999999998887544444543 48999999997531 2234667788999
Q ss_pred ccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehh
Q 011842 246 VKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME 323 (476)
Q Consensus 246 ~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~ 323 (476)
++|.+.|+++|.++|+++|+ ++|+|++|+.+.++. .... ..+.. ...+.+..+++|+++ |.|+|+++.+ +
T Consensus 155 ~~G~i~pl~eI~~l~~~~~~-----~livDea~~~G~~g~~g~g~~~~~~~-~~~~~~~~tlsK~~g-~~G~~vl~~~-~ 226 (370)
T PRK05937 155 FKGTLAPLEQIIALSKKYHA-----HLIVDEAHAMGIFGDDGKGFCHSLGY-ENFYAVLVTYSKALG-SMGAALLSSS-E 226 (370)
T ss_pred CCCCccCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCchHHhhCC-CCCcEEEEechhhhh-cCceEEEcCH-H
Confidence 99999999999999999999 999999998654431 1110 00111 112355677889887 6777776653 3
Q ss_pred hhhhhc-CCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE
Q 011842 324 HINVLS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF 402 (476)
Q Consensus 324 ~~~~l~-~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f 402 (476)
....+. ....|.+ .++-+.....++.++++.+...+ +...+++.+++++|.+.|...+. . .++.+
T Consensus 227 ~~~~~~~~~~~~~~------s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~~------~-~~~~i 292 (370)
T PRK05937 227 VKQDLMLNSPPLRY------STGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSAAP------G-CVQPI 292 (370)
T ss_pred HHHHHHHhCCCCee------cCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCCCC------C-CEEEE
Confidence 322221 1122322 22222223344445666554444 45667888888999888764321 0 11223
Q ss_pred ecCC--cHHHh-----hceeec----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 403 ERPQ--DEEFV-----RRWQLA----CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 403 ~~~~--~~~~~-----~~~~l~----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+. ...+. +++.+. .....+|++++.++|+||||+|+++|+++.++.
T Consensus 293 ~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 293 FLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred EeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3332 22222 233332 124689999999999999999999999987653
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=200.79 Aligned_cols=292 Identities=8% Similarity=-0.056 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++|+++.+|.+.++ .++++|+|+++++..++.+..+ ||+.|++..++|..+...++.+|++++.++++
T Consensus 79 G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~ 156 (405)
T PRK06207 79 GDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLD 156 (405)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEecc
Confidence 45689999999999999976443 5699999999999988888765 99999999999999999999999999999885
Q ss_pred -----CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 215 -----ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 215 -----~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
.++.+|++.|++++.++++ +|++++++|+||.+-+ +++|+++|++||+ ||++|++|+.+.+...
T Consensus 157 ~~~~~~~~~~d~~~l~~~~~~~~k---~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~-----~iI~De~Y~~~~~~~~ 228 (405)
T PRK06207 157 YLSADKRAGLDLDQLEEAFKAGVR---VFLFSNPNNPAGVVYSAEEIAQIAALARRYGA-----TVIVDQLYSRLLYDGT 228 (405)
T ss_pred ccCcccCCCcCHHHHHHhhhhcCe---EEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEeccccccccCCC
Confidence 2477999999999976654 7888899999999976 7889999999999 9999999987655322
Q ss_pred ccCCCCCC--cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-
Q 011842 287 KKAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG- 362 (476)
Q Consensus 287 ~~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g- 362 (476)
...+.... ...--+++.|+.|.++ .++++|+++.++++++.+.....+... +.+ .+.+.++...+.
T Consensus 229 ~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~-------~~~---~~~q~a~~~~l~~ 298 (405)
T PRK06207 229 SYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSL-------RAA---GYSQAVLRTWFSE 298 (405)
T ss_pred CCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhcc-------CCC---HHHHHHHHHHHhC
Confidence 22111111 1112256678889886 889999999988877665432222110 111 123333333332
Q ss_pred -hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC----cHHHhh------ceeecc-------cCCEE
Q 011842 363 -YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ----DEEFVR------RWQLAC-------QGNIA 423 (476)
Q Consensus 363 -~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~----~~~~~~------~~~l~~-------~~~~l 423 (476)
..-+++.+++..++++++.+.|++.+...+.++ .++.+.++.+. ..++.+ +..+.. ..+++
T Consensus 299 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~ 378 (405)
T PRK06207 299 PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSI 378 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeE
Confidence 123567777888888889999987632334434 45666666542 233322 233321 24689
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
|+++.. +.++++.-++.|.+..++
T Consensus 379 Ris~~~--~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 379 RLNFSQ--DHAAAVAAAERIAQLIER 402 (405)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHH
Confidence 999874 688888888888877654
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=205.39 Aligned_cols=285 Identities=17% Similarity=0.171 Sum_probs=185.2
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEeCCCCCc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYRMECVKVDCLISGE 218 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~~~g~ 218 (476)
.++++.+++++|.+. ++++++||++++.++.+... .+++.|++++++|+++.+ .+...|++++.+|.++++.
T Consensus 43 ~~l~~~la~~~~~~~----~~~~~~Gs~a~~~~l~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 117 (353)
T PLN02721 43 LRLEEEMAKIFGKEA----ALFVPSGTMGNLISVLVHCD-VRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGT 117 (353)
T ss_pred HHHHHHHHHHhCCce----eEEecCccHHHHHHHHHHcc-CCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCC
Confidence 344555677777753 78888999999888777543 289999999999988776 5678899999999888889
Q ss_pred cCHHHHHHHHHcCC----CCcEEEEEeeC-CCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 219 IDCADFKAKLLQNK----DKPAIINVNIG-TTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 219 ~D~~~Le~~l~~~~----~~p~~vv~t~g-tt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+|+++|++.|.+.. +++.+|++++. ++++|.+.| +++|+++|++||+ ++|+|++|..+.. ...+..
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~-----~livD~a~~~~~~-~~~~~~ 191 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGL-----KLHIDGARIFNAS-VALGVP 191 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCC-----EEEEEchhhhcch-hhhCCC
Confidence 99999999997421 12346666554 567887654 8899999999999 9999999753221 101111
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.......+|++++++|||+++|.+ ++++.++++++.+.....+. .++.... .....+++..+ +...+.+
T Consensus 192 ~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~l--~~~~~~~ 260 (353)
T PLN02721 192 VHRLVKAADSVSVCLSKGLGAPVG-SVIVGSKSFIRKAKRLRKTL-------GGGMRQV-GVLAAAALVAL--QENVPKL 260 (353)
T ss_pred HHHHhhhCCEEEEecccccCCcee-eEEecCHHHHHhHHHHHHhc-------CCCeehh-HHHHHHHHHHH--HHHHHHH
Confidence 111223589999999999986533 23555666655432211111 1111111 11111122211 2222334
Q ss_pred HHHHHHHHHHHHHHHhc-CCeE-eecCCeeEEEEecCC-----cHHHhh-----ceee-cccCCEEEEEEcCCCCHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDA-GISA-MLNELSSTVVFERPQ-----DEEFVR-----RWQL-ACQGNIAHVVVMPNVTIDKLD 437 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~-g~~~-~~~~~~~iv~f~~~~-----~~~~~~-----~~~l-~~~~~~lRv~~~~~~T~edid 437 (476)
++..++++++.+.|++. ++.. +.++.++++.++.+. ...+.+ ++.+ +.....+|++++..+|++||+
T Consensus 261 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~ 340 (353)
T PLN02721 261 EDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQ 340 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHH
Confidence 55567888999999987 4433 344556777777653 222322 2223 233478999999999999999
Q ss_pred HHHHHHHHHHH
Q 011842 438 DFLNELIENRS 448 (476)
Q Consensus 438 ~~~~~l~~~~~ 448 (476)
+++++|+++..
T Consensus 341 ~~~~~l~~~~~ 351 (353)
T PLN02721 341 YTLSCFQQAAL 351 (353)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=199.78 Aligned_cols=289 Identities=12% Similarity=0.016 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+..|.+.++ .++++|+|+++++...+.+..+ ||+.|++++++|..+...++.+|++++.+|++
T Consensus 70 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 147 (399)
T PRK07681 70 GIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYAN--PGDIILVPDPGYTAYETGIQMAGATSYYMPLK 147 (399)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCC--CCCEEEECCCCccchHHHHHhcCCEEEEEecC
Confidence 56789999999999888876444 5699999999999888877765 89999999999999999999999999999997
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++ +.+|+++|++++.++++ +|++++|+|+||.+-+ +++|+++|++||+ ||++|++|+.+.+......
T Consensus 148 ~~~~~~~d~~~l~~~~~~~~k---~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~-----~iI~De~y~~~~~~~~~~~ 219 (399)
T PRK07681 148 KENDFLPDLELIPEEIADKAK---MMILNFPGNPVPAMAHEDFFKEVIAFAKKHNI-----IVVHDFAYAEFYFDGNKPI 219 (399)
T ss_pred CCCCCcCCHHHHHHhccccce---EEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCe-----EEEEeccchhheeCCCCCC
Confidence 54 46799999998865443 7888899999999977 7889999999999 9999999987655322222
Q ss_pred CCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 PKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+...... ...++..|++|.++ .++++||++.++++++.+.....+. ..+. ..+.+.++...+ +..
T Consensus 220 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~-------~~~~---s~~~q~~~~~~l~~~~~ 289 (399)
T PRK07681 220 SFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNT-------DYGV---FLPIQKAACAALRNGAA 289 (399)
T ss_pred ChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhc-------ccCC---CHHHHHHHHHHHhCcHH
Confidence 2122211 12456678899885 8899999999887776653322221 0111 123344444443 223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHH----hh--ceeecc-------cCCEEEEEEc
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEF----VR--RWQLAC-------QGNIAHVVVM 428 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~----~~--~~~l~~-------~~~~lRv~~~ 428 (476)
-+++..+.+.++++++.+.|++.|+....++.++.+.+..++ +.++ .+ +..+.. ..+.+|+++.
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 369 (399)
T PRK07681 290 FCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV 369 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec
Confidence 356666777888889999999988643344455666666553 2222 22 333311 1368999987
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~ 446 (476)
.+.++++.+++.|+++
T Consensus 370 --~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 370 --QDEEVLQQAVENIRNS 385 (399)
T ss_pred --CCHHHHHHHHHHHHHh
Confidence 4689999999999874
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=202.45 Aligned_cols=287 Identities=14% Similarity=0.062 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+++|.+.+.. .+++|+|+++|+..++.+... |++.|++++++|.++..+++..|++++.++++
T Consensus 68 G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (386)
T PRK09082 68 GVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVR--PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQ 145 (386)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecC
Confidence 567999999999999999864332 589999999999998887765 89999999999999999999999999999997
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+++.+|++++++.+.++++ +|++++++++||.+ +++++|+++|++|++ ++++|++|+.+.+......+
T Consensus 146 ~~~~~~d~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i-----~li~De~y~~~~~~~~~~~s 217 (386)
T PRK09082 146 PPDFRVDWQRFAAAISPRTR---LIILNTPHNPSGTVWSAADMRALWQLIAGTDI-----YVLSDEVYEHIVFDGAGHAS 217 (386)
T ss_pred cccccCCHHHHHHhcCccce---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCE-----EEEEehhhhhhccCCCCCCC
Confidence 4578999999999865443 77788899999977 679999999999999 99999999866553222221
Q ss_pred CCCCc--ccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 291 KVSFK--KPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 291 ~~~~~--~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
..... ..-.++..|+.|.+ ..++++|+++.++++++.+.....+.. +. . ..+.++++...+ ..+.
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~-----~~--~---~~~~q~~~~~~l~~~~~~ 287 (386)
T PRK09082 218 VLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNT-----FT--V---NTPAQLALADYLRAEPEH 287 (386)
T ss_pred hhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhc-----CC--C---ChHHHHHHHHHHhCChHH
Confidence 11111 12346667889988 478999999999887666543322211 01 1 123333333333 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-EEEEecC-----CcHHHhh------ceee-c--------ccCCEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-TVVFERP-----QDEEFVR------RWQL-A--------CQGNIAH 424 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-iv~f~~~-----~~~~~~~------~~~l-~--------~~~~~lR 424 (476)
+++..+.+.++++++.+.|++.++.. .++.++ .+.+..+ ...++.. +..+ + ...+.+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~R 366 (386)
T PRK09082 288 YLELPAFYQAKRDRFRAALANSRFKL-LPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVR 366 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEE
Confidence 56667777889999999999877643 344444 3444543 1223322 2222 1 1136899
Q ss_pred EEEcCCCCHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~ 445 (476)
+++.. ++++++..++.|++
T Consensus 367 i~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 367 LCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred EEecC--CHHHHHHHHHHHhh
Confidence 99874 68888888887764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=201.16 Aligned_cols=295 Identities=14% Similarity=0.063 Sum_probs=204.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh---CC--------------------------CcE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV---FP--------------------------DGI 186 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~---~p--------------------------~~~ 186 (476)
...++|..+.+...++||.+.. -+-..+|+.||+.+..+.... .| +|.
T Consensus 92 ~~d~ie~l~~~ra~~lf~a~~a---nvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~ 168 (493)
T PRK13580 92 NVDTVEWEAAEHAKELFGAEHA---YVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR 168 (493)
T ss_pred hHHHHHHHHHHHHHHHhCCCcc---cccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE
Confidence 3568999999999999998753 344569999999998887751 11 677
Q ss_pred EEecCCC---chHHHHHHHHcC--CeEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHH
Q 011842 187 LYASRES---HYSVFKAARMYR--MECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTL 260 (476)
Q Consensus 187 Vl~s~~~---H~S~~~~~~~~G--~~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia 260 (476)
|+.-... |.+......+.| .+++.++++ ++|.+|++++++.+.+.++ .|++++.++. +...|+++|.++|
T Consensus 169 i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~p---lvii~g~S~~-~~~~dl~~i~eia 244 (493)
T PRK13580 169 LLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKP---LILVAGYSAY-PRRVNFAKLREIA 244 (493)
T ss_pred EEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCC---EEEEeCcccc-CCCcCHHHHHHHH
Confidence 7765443 333322223334 356667776 4689999999999988765 6666666777 5577999999999
Q ss_pred HHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCC
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDA 340 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~ 340 (476)
++||+ ++++|+||+.++++.............+|++++++||++++|. .|++++++++.+.+....+|+++
T Consensus 245 ~~~gA-----~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~-GG~I~~~~~l~~~L~~a~P~i~g--- 315 (493)
T PRK13580 245 DEVGA-----VLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR-GGLVLAKKEYADAVDKGCPLVLG--- 315 (493)
T ss_pred HHcCC-----EEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCC-eEEEEecHHHHHHHhhCCCcccC---
Confidence 99999 9999999997777533221111222359999999999997777 48999988876655333345433
Q ss_pred cccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCCcH----HHh----
Q 011842 341 TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQDE----EFV---- 411 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~~~----~~~---- 411 (476)
+.......+...++.......++++.++.++++++|++.|.+.|+.++.. ..+.++.+..++.. ...
T Consensus 316 ----g~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~ 391 (493)
T PRK13580 316 ----GPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALL 391 (493)
T ss_pred ----CCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 22222223333344444344567889999999999999999999876532 34677777765421 111
Q ss_pred -hceee-----c---cc---CCEEEEEEcC----CCCHHHHHHHHHHHHHHHHHH
Q 011842 412 -RRWQL-----A---CQ---GNIAHVVVMP----NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 412 -~~~~l-----~---~~---~~~lRv~~~~----~~T~edid~~~~~l~~~~~~~ 450 (476)
.++.+ | .+ ...+|++++. .++++||+++++.|.++.+..
T Consensus 392 e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 392 DAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred HCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 22222 2 22 4679999887 557999999999999887643
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=198.28 Aligned_cols=288 Identities=13% Similarity=0.087 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++++++|.+. ..++|+ |++++..++.+... |++.|+++++.|+++...++..|++++.++.
T Consensus 84 G~~~l~~~l~~~la~~~g~~~---~i~~ts-G~~a~~~~~~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (397)
T PRK06939 84 GTQDLHKELEEKLAKFLGTED---AILYSS-CFDANGGLFETLLG--KEDAIISDALNHASIIDGVRLCKAKRYRYAN-- 155 (397)
T ss_pred CCcHHHHHHHHHHHHHhCCCc---EEEEcC-hHHHHHHHHHHhCC--CCCEEEEEhhhhHHHHHHHHhcCCceEEeCC--
Confidence 345788899999999999752 245555 58898888777655 9999999999999999999999999888775
Q ss_pred CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cc-cCC
Q 011842 216 SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VK-KAP 290 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~-~~~ 290 (476)
.|+++|++.+++. ..++.+|+..+..+++|.+.++++|.++|++||+ |+++|++|+.+.... .. ...
T Consensus 156 ---~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~-----~li~De~~~~g~~~~~~~~~~~ 227 (397)
T PRK06939 156 ---NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDA-----LVMVDDSHAVGFVGENGRGTVE 227 (397)
T ss_pred ---CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCC-----EEEEECcccccCcCCCCCCHHH
Confidence 4899999988752 1244566666678899999999999999999999 999999996333221 11 001
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
.......+|+++.|+||+++ |+++|+++.++++++.+... ..|. ..++.......++.++++.+. ...+.
T Consensus 228 ~~~~~~~~~i~~~S~sK~~~-g~r~G~v~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~~~al~~~~--~~~~~ 298 (397)
T PRK06939 228 HFGVMDRVDIITGTLGKALG-GASGGYTAGRKEVIDWLRQRSRPYL------FSNSLAPAIVAASIKVLELLE--ESDEL 298 (397)
T ss_pred HcCCCCCCcEEEEECHHHhC-ccCceEEEeCHHHHHHHHHhCcccc------ccCCCCHHHHHHHHHHHHHHh--cCHHH
Confidence 12222347899999999996 45789999988877665321 1121 112221111222333444432 23567
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeec--------ccCCEEEEEEcCCCCH
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLA--------CQGNIAHVVVMPNVTI 433 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~--------~~~~~lRv~~~~~~T~ 433 (476)
.++..++++++.+.|++.++... ++...++.+..+. ..++. +++.+. .....+|++++..+|+
T Consensus 299 ~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~ 377 (397)
T PRK06939 299 RDRLWENARYFREGMTAAGFTLG-PGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTK 377 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECCCCCH
Confidence 78888899999999998876433 3334444433332 22232 233221 1235799999998999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011842 434 DKLDDFLNELIENRST 449 (476)
Q Consensus 434 edid~~~~~l~~~~~~ 449 (476)
++|+++++.|+++.++
T Consensus 378 ~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 378 EQLDRAIDAFEKVGKE 393 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=198.41 Aligned_cols=291 Identities=14% Similarity=0.072 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+..|++.++. .+++|+|+++|+..++.+... +++.|++++++|..+...++.+|++++.++++
T Consensus 64 G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 141 (387)
T PRK08912 64 GLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVE--PGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE 141 (387)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEecC
Confidence 457999999999998888764444 699999999999888777655 89999999999999999999999999999986
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ ++.+|++.|++.+.++++ ++++++++|+||.+-+ +++|+++|++|++ ++++|++|+.+.+....+.+
T Consensus 142 ~~~~~~~~~~l~~~~~~~~~---~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~-----~ii~De~y~~~~~~~~~~~~ 213 (387)
T PRK08912 142 PPHWRLPRAALAAAFSPRTK---AVLLNNPLNPAGKVFPREELALLAEFCQRHDA-----VAICDEVWEHVVFDGRRHIP 213 (387)
T ss_pred cccCcCCHHHHHHHhCccce---EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCe-----EEEEhhhhhhcccCCCCCcC
Confidence 4 578999999998866544 7777899999999865 7789999999999 99999999765543212222
Q ss_pred CCCC--cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhc
Q 011842 291 KVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKG 365 (476)
Q Consensus 291 ~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g 365 (476)
.... ....+++..|++|.++ .++++|++++++++++.+.....+. .+..+. ..+.++...+. .+-
T Consensus 214 ~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~-----~~~~~~-----~~q~~~~~~l~~~~~~ 283 (387)
T PRK08912 214 LMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFL-----TFTTPP-----NLQAAVAYGLGKPDDY 283 (387)
T ss_pred hhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhc-----cccCCh-----HHHHHHHHHHhCCHHH
Confidence 1221 1124678899999987 7899999999988766553221111 011111 11222222221 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC------cHHHhh------ceee-cc--------cCCEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ------DEEFVR------RWQL-AC--------QGNIAH 424 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~------~~~~~~------~~~l-~~--------~~~~lR 424 (476)
+++..++..++++++.+.|++.|+....+....++.+..+. +.++.+ ++.+ +. ..+++|
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iR 363 (387)
T PRK08912 284 FEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVR 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEE
Confidence 46667778889999999999988643333334444444432 222322 2322 11 136899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+++.. .++.++..++.|.+..+
T Consensus 364 l~~~~--~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 364 FCFAK--RDATLDEAVERLAAARR 385 (387)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHh
Confidence 99884 47888888888876543
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=199.97 Aligned_cols=292 Identities=13% Similarity=0.051 Sum_probs=207.7
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELE-NNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~-~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++++|+.+..|++ .++. ++++|+|+++++..++.+..+ +|+.|+++.++|..+...++..|++++.+|+
T Consensus 82 G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 82 GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFIN--PGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred CcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCC--CCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 56799999999999888875 4433 599999999999888877765 8999999999999999999999999999999
Q ss_pred CCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 LIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+++ +.+|++.|++.+.++++ +|++++|+|+||.+-+ +++|+++|++||+ ||++|++|+.+.+.. ..
T Consensus 160 ~~~~~~~~d~~~l~~~~~~~~k---~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~-----~iI~DEaY~~~~~~~-~~ 230 (410)
T PRK06290 160 LEENNFLPDLDSIPKDIKEKAK---LLYLNYPNNPTGAVATKEFYEEVVDFAKENNI-----IVVQDAAYAALTFDG-KP 230 (410)
T ss_pred CCCcCCcCCHHHHHHhhcccce---EEEEECCCCCCCcCCCHHHHHHHHHHHHHcCe-----EEEEecchhhceeCC-CC
Confidence 753 56799999998865443 7888889999999977 6788888999999 999999998665422 11
Q ss_pred CCCCCCc--ccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-h
Q 011842 289 APKVSFK--KPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-K 364 (476)
Q Consensus 289 ~~~~~~~--~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~ 364 (476)
.+..... ...+++..|+.|.+ ++++++|+++.++++++.+.....+... + ...+.+.++...+.. +
T Consensus 231 ~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~-------~---~~~~~q~aa~~~l~~~~ 300 (410)
T PRK06290 231 LSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDS-------G---QFIAIQKAGIYALDHPE 300 (410)
T ss_pred cChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhcccc-------C---CcHHHHHHHHHHhhCcH
Confidence 1212221 12457788899988 5889999999988776655332222110 1 112333334444322 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEE-EecCC----------cHHHhhc------ee-ec--ccCCEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVV-FERPQ----------DEEFVRR------WQ-LA--CQGNIAH 424 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~-f~~~~----------~~~~~~~------~~-l~--~~~~~lR 424 (476)
-.++..++..++++++.+.|++.|+. +.++..+.+. +..++ ..++.+. +. ++ .-++++|
T Consensus 301 ~~~~~~~~~~~~~~~l~~~L~~~g~~-~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lR 379 (410)
T PRK06290 301 ITEKIREKYSRRLDKLVKILNEVGFK-AEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLR 379 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCe-ecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEE
Confidence 25566777888999999999998764 3344444444 35542 2222221 11 12 1246899
Q ss_pred EEEc-CCCCHHHHHHHHHHHHHHHHH
Q 011842 425 VVVM-PNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 425 v~~~-~~~T~edid~~~~~l~~~~~~ 449 (476)
+++. +..++|+.++++++|++.+.+
T Consensus 380 i~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 380 FSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred EEEEcccccccchhHHHHHHHHHHhh
Confidence 9874 666999999999999888754
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=197.38 Aligned_cols=295 Identities=11% Similarity=0.114 Sum_probs=204.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC-cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENN-EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~-~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++.+.+++.+..|+..+ +..+++|+|+++|+..++.+... +++.|++..++|..+...++.+|++++.++.+
T Consensus 68 g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (391)
T PRK07309 68 GLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILE--PGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT 145 (391)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEEecC
Confidence 5679999999999888887532 23599999999999998887755 89999999999999999999999999999986
Q ss_pred CC-CccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 IS-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++ +.+|++.|++++.+...++.++++++++|+||.+- ++++|+++|++|++ ++++|++|+.+.+......+
T Consensus 146 ~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~-----~ii~D~~y~~~~~~~~~~~~ 220 (391)
T PRK07309 146 ENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDI-----FVISDEVYSELTYTGEPHVS 220 (391)
T ss_pred CcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCc-----EEEEEccccceeeCCCCCCC
Confidence 54 57999999999976433455788888999999874 48999999999999 99999999876543212111
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh--hcHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY--KGFQ 367 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~--~g~~ 367 (476)
.......-.++..|++|.++ .++++|+++.++++++.+.....|... +. ..+.+.++...+.. ....
T Consensus 221 ~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~-------~~---~~~~q~~~~~~l~~~~~~~~ 290 (391)
T PRK07309 221 IAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVT-------AA---TTMAQFAAVEALTNGKDDAL 290 (391)
T ss_pred HHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhccc-------CC---ChHHHHHHHHHHhCChhHHH
Confidence 11111112356678899885 889999999998877665432223211 11 12333333333321 1123
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCee-EEEEecCC-----cHHHh------hceeec-c------cCCEEEEEEc
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSS-TVVFERPQ-----DEEFV------RRWQLA-C------QGNIAHVVVM 428 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-iv~f~~~~-----~~~~~------~~~~l~-~------~~~~lRv~~~ 428 (476)
...++..++++++.+.|++.++. +.++..+ .+.++.+. +.++. +++.+. . ..+++|+++.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~~~-~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 369 (391)
T PRK07309 291 PMKKEYIKRRDYIIEKMTDLGFK-IIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA 369 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCe-ecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence 44566677888899999988764 3344443 34445442 12222 233332 1 2468999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~~~~~ 450 (476)
. +.++++..++.|.++.+++
T Consensus 370 ~--~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 370 A--SMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred C--CHHHHHHHHHHHHHHHHhh
Confidence 4 6789999999998877553
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-21 Score=194.83 Aligned_cols=297 Identities=13% Similarity=0.037 Sum_probs=208.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCC-cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 135 VHSRQFEVGVLDWFARLWELENN-EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~-~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
.+..++++++++++++++|.+.+ +..+++|+|+++++..++.+... |++.|+++.+.|..+...++..|++++.+|.
T Consensus 65 ~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 142 (389)
T PRK05957 65 QGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITD--PGDEIILNTPYYFNHEMAITMAGCQPILVPT 142 (389)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCEEEEeCCCCcCHHHHHHhcCCEEEEeec
Confidence 35679999999999999998533 34589999999999888777655 8999999999998888888889999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.++.+|+++|++++.++++ +|++++++|+||.+.+ +++|+++|++||+ ++++|++|+.+.+......+
T Consensus 143 ~~~~~~d~~~l~~~i~~~~k---lv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-----~li~De~y~~~~~~~~~~~~ 214 (389)
T PRK05957 143 DDNYQLQPEAIEQAITPKTR---AIVTISPNNPTGVVYPEALLRAVNQICAEHGI-----YHISDEAYEYFTYDGVKHFS 214 (389)
T ss_pred CCCCCcCHHHHHHhcCcCce---EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCc-----EEEEeccchhccCCCCCccC
Confidence 87789999999999976554 7778889999999987 8999999999999 99999999866543222111
Q ss_pred CCCCc-cc-ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhc
Q 011842 291 KVSFK-KP-IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKG 365 (476)
Q Consensus 291 ~~~~~-~~-~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g 365 (476)
..... .. -.++..|+.|.++ .++++|++++++++++.+.....+. ..+.+ .+.+.++...+. ..-
T Consensus 215 ~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~q~~~~~~l~~~~~~ 284 (389)
T PRK05957 215 PGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTI-------LICPP---VVSQYAALGALQVGKSY 284 (389)
T ss_pred hhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhc-------ccCCC---cHHHHHHHHHHhCChHH
Confidence 11111 11 2355667789885 7789999999888776664322111 11111 234444444442 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-eEeecCCee-EEEEecCC---cHHHh----h--ceeecc-------cCCEEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGI-SAMLNELSS-TVVFERPQ---DEEFV----R--RWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~-~~~~~~~~~-iv~f~~~~---~~~~~----~--~~~l~~-------~~~~lRv~~ 427 (476)
+++..++..++++++.+.|++.+. ..+.++..+ .+.+..+. +.++. + ++.+.. .++++|+++
T Consensus 285 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~ 364 (389)
T PRK05957 285 CQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAY 364 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEE
Confidence 577777888899999999988643 234444443 34444432 22332 2 233321 135899998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 428 MPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.. .++++++..++.|.+..+++.+
T Consensus 365 ~~-~~~~~l~~~~~~l~~~~~~~~~ 388 (389)
T PRK05957 365 GA-LQKATAKEGIERLVQGLKTIVQ 388 (389)
T ss_pred ec-CCHHHHHHHHHHHHHHHHhhhc
Confidence 53 4688888888888887776654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=203.78 Aligned_cols=298 Identities=10% Similarity=-0.017 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
.+..++++++.+|+.+..|++.++.++++|+|+++++..++.+.. + |||.|+++.++|.++...++..|++++.+++
T Consensus 115 ~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 115 AGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD--PSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC--CCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 367899999999999888877655679999999999999988876 5 8999999999999999999999999999998
Q ss_pred CCC--CccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 214 LIS--GEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 214 ~~~--g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+++ +.+|+++|++++.+. ..++.++++++++|+||.+-+ +++|+++|++|++ ||++|++|+...+..
T Consensus 193 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~-----~iI~De~Y~~l~~~~ 267 (481)
T PTZ00377 193 DEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGI-----VLMADEVYQENIYDG 267 (481)
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCC-----EEEEehhhHhhccCC
Confidence 743 579999999999752 113447777789999999977 8999999999999 999999998665421
Q ss_pred c-ccCCCC----CCcc----ccc-EEEEcCCCCC--CCCCCceeEEe---ehhhhhhhcCCccccCCCCCcccCCCCChh
Q 011842 286 V-KKAPKV----SFKK----PIG-SVSVSGHKFV--GCPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNGHA 350 (476)
Q Consensus 286 ~-~~~~~~----~~~~----~~D-si~~s~hK~l--~~p~~~G~l~~---~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~ 350 (476)
. ...+.. +... ... ++..|+.|.+ ++++++||+++ ++++++.+...... . .+ . .
T Consensus 268 ~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~------~-~~-~---~ 336 (481)
T PTZ00377 268 EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASI------N-LC-S---N 336 (481)
T ss_pred CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhhe------e-cC-C---C
Confidence 1 111100 1111 011 3445788953 37999999987 56666655322111 0 01 1 1
Q ss_pred HHHHHHHHHHhC-----hhc---H----HHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecC--C---------
Q 011842 351 PIFLWYTLNRKG-----YKG---F----QKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERP--Q--------- 406 (476)
Q Consensus 351 ~l~~~~~l~~~g-----~~g---~----~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~--~--------- 406 (476)
.+.+.++...+. ... + ++..+++.++++++.+.|++.+...+..|.. ..+++..+ .
T Consensus 337 ~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~ 416 (481)
T PTZ00377 337 VVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKER 416 (481)
T ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhc
Confidence 244444444431 111 2 2223345677888999998873334444544 44443322 1
Q ss_pred ----cHHH----hh--ceee-cc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 407 ----DEEF----VR--RWQL-AC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 407 ----~~~~----~~--~~~l-~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+..+ .+ +..+ +. ..+.+|+++. .+.++++..++.|.+..+.+++
T Consensus 417 ~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 417 GLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred CCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 2222 11 1258999987 7789999999999999888775
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=200.67 Aligned_cols=295 Identities=16% Similarity=0.025 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-- 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-- 214 (476)
..++++++.+++.+..|.+.+...+++|+|+++|+.+++.+..+ ||+.|++++++|..+...+.+.|++++.+++.
T Consensus 96 ~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~--~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~ 173 (430)
T PLN00145 96 LLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQ--PGANILLPRPGYPLYEARAVFSGLEVRHFDLLPE 173 (430)
T ss_pred CHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcc
Confidence 45899999999888777765556799999999999998888765 99999999999999999999999999999874
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.++.+|+++|++.+.++++ ++++++|+|+||.+.+ +++|+++|++||+ ++++|++|+.+.+......+.
T Consensus 174 ~~~~~d~~~l~~~~~~~~~---~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i-----~ii~De~Y~~~~~~~~~~~~~ 245 (430)
T PLN00145 174 RGWEVDLEGVEALADENTV---AMVIINPNNPCGSVYSYEHLAKIAETARKLGI-----LVIADEVYDHLTFGSKPFVPM 245 (430)
T ss_pred cCCcCCHHHHHHHhCcCce---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEeccchhhccCCCCccch
Confidence 3578999999998877664 7888889999999987 8889999999999 999999998765532222221
Q ss_pred CCCccc-ccEEEEcCCC-CCCCCCCceeEEeeh--hhhhhh---cCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--
Q 011842 292 VSFKKP-IGSVSVSGHK-FVGCPMPCGVQITRM--EHINVL---SSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-- 362 (476)
Q Consensus 292 ~~~~~~-~Dsi~~s~hK-~l~~p~~~G~l~~~~--~~~~~l---~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-- 362 (476)
..+... --++..|+.| |++++|++||+++.+ .+++.. .....+. .+..+. ..+.++++...+.
T Consensus 246 ~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~Q~a~~~~l~~~ 317 (430)
T PLN00145 246 GVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYL-----NISTDP---ATFVQGAIPQIIANT 317 (430)
T ss_pred hhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHh-----cccCCC---CHHHHHHHHHHHhcC
Confidence 111111 1234445666 588999999999742 222210 0001111 011111 1344444444442
Q ss_pred -hhcHHHHHHHHHHHHHHHHHHHHhc-CCeEe-ecCCeeEEEEecC--------CcHHHhh------ceee-cc----cC
Q 011842 363 -YKGFQKEVQKCLRNAHYLKDRLLDA-GISAM-LNELSSTVVFERP--------QDEEFVR------RWQL-AC----QG 420 (476)
Q Consensus 363 -~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~-~~~~~~iv~f~~~--------~~~~~~~------~~~l-~~----~~ 420 (476)
..-+++.+++.+++++++.+.|++. ++... .+..++.+.+..+ ++.++.. +..+ +. ..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~ 397 (430)
T PLN00145 318 KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMK 397 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCC
Confidence 2346778888889999999999886 44333 3445566665543 1223332 1222 21 23
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+++|+++. ...++++..++.|.+...+..
T Consensus 398 ~~lRis~~--~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 398 NWLRITFA--IDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred CeEEEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence 79999987 367888888888877766544
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=200.44 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecC------CCchHHHHHHHHcCCeEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVGREVFPDGILYASR------ESHYSVFKAARMYRMECV 209 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~------~~H~S~~~~~~~~G~~v~ 209 (476)
..++|+.+.+...++|+...+....-+ +.+|+.||+.++.+... |++.|+..+ .+|.+.....++.+....
T Consensus 78 ~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~--pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~ 155 (475)
T PLN03226 78 IDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ--PHDRIMGLDLPHGGHLSHGYQTDGKKISATSIY 155 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC--CCCEEEECCCCcCcchhhhhhhcccccccceEE
Confidence 467888788888999998754211111 37999999999988876 999999844 455555555544444322
Q ss_pred ----EEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 210 ----KVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 210 ----~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
.++++ ++|.+|+++|++.+.+.. |.+|++ +.+.+|..-|+++|.++|++||+ ++++|+||+.++++
T Consensus 156 ~~~~~y~~~~~~g~iD~d~Le~~l~~~~--pklIv~--~~S~~s~~~D~a~i~~ia~~~ga-----~LlvD~AH~~Gli~ 226 (475)
T PLN03226 156 FESMPYRLDESTGLIDYDKLEKKAMLFR--PKLIIA--GASAYPRDWDYARMRKIADKVGA-----LLMCDMAHISGLVA 226 (475)
T ss_pred EEeeeeeecCCCCCcCHHHHHHHHhhcC--CeEEEE--ecCcCCCccCHHHHHHHHHHcCC-----EEEEEchhhhCccc
Confidence 44555 468999999999997542 335544 23457788899999999999999 99999999877664
Q ss_pred ccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC----ccc--cCCC--CCcccCCCCChhHHHHHH
Q 011842 285 FVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN----VEY--LASR--DATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 285 ~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~----~~y--l~~~--~~~~~~sr~~~~~l~~~~ 356 (476)
.......+ +.+|++++++||||++|.| |+++++++..+.+... .+| .... ...+.++.+.....++.+
T Consensus 227 ~~~~~~p~---~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~a 302 (475)
T PLN03226 227 AQEAASPF---EYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAV 302 (475)
T ss_pred CCCCCCCC---CCCeEEEecCcccccCCCc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHH
Confidence 33222112 2499999999999988888 8888887543211000 011 0010 112344444344556777
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEec-C---CcHHH---hhcee-------ecc---
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFER-P---QDEEF---VRRWQ-------LAC--- 418 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~-~---~~~~~---~~~~~-------l~~--- 418 (476)
+++.+...+++++.++..+++++|++.|++.|+.++.+ ..++++.+.. + ...+. +.... +|.
T Consensus 303 Al~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~ 382 (475)
T PLN03226 303 ALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSS 382 (475)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcc
Confidence 78877667888999999999999999999999876653 2245555543 2 12112 22111 111
Q ss_pred --cCCEEEE----EEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHV----VVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 --~~~~lRv----~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
....+|+ .++..++++|++++.+.|.++++..
T Consensus 383 ~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 383 ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 2345887 5788889999999999999988753
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-22 Score=200.84 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=202.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCC-chhHHHHHHHHHHh-hCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNC-GTEGNLHGILVGRE-VFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~g-gt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
...++.+++++.+++++|.+. ++..+||+| +|+|+..++..... ..++++|++....|.+ .+.++..|++++.++.
T Consensus 41 ~~~~~~~~~r~~l~~l~~~~~-~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~~-~~~a~~~g~~~~~~~~ 118 (355)
T cd00611 41 DFEAIVNEAESDLRELLNIPD-NYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKA-AKEAKRYGGVVVIVAA 118 (355)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHH-HHHHHhcCCCcEEEec
Confidence 455788899999999999853 456889988 99998887777532 1256677776555544 4466778999999998
Q ss_pred CCCCcc-C-HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 214 LISGEI-D-CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~~~g~~-D-~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+++|.. + ++..+..+.++++ +|.+++.+|.+|.+- . ++++.||+ +++||++++.+..|
T Consensus 119 ~~~g~~~~~~~~~~~~~~~~~~---lV~~~h~~t~tG~~~--~---~i~~~~g~-----~~~VDa~qs~g~~~------- 178 (355)
T cd00611 119 KEEGKYTKIPDVETWDLAPDAA---YVHYCSNETIHGVEF--D---EVPDTGGV-----PLVADMSSNILSRP------- 178 (355)
T ss_pred ccccCCCCCCCHhhcCCCCCCC---EEEEeCCcccccEEc--c---eecccCCC-----eEEEEccccccCCC-------
Confidence 655433 4 2323333444444 899999999999982 2 44556999 99999999988777
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCC----CCCcccCCCCChhHHHHHHHHHHhChh-c
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGYK-G 365 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~~-g 365 (476)
+++.+ .|...+++||+++ |.|+|+++++++.++.+... +.+... ......++.+....+++.++++++..+ |
T Consensus 179 idv~~-~~~~~ss~~K~lG-P~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg 256 (355)
T cd00611 179 IDVSK-FGVIYAGAQKNLG-PAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGG 256 (355)
T ss_pred CCHHH-hCEEEeecccccC-CCceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC
Confidence 55543 3555566999886 99999999999877654322 122210 111124677666677888999998777 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeEe-ecC--Ce-eEEEEecCC---cHHHh-----hceeecc---cCCEEEEEEcC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDA-GISAM-LNE--LS-STVVFERPQ---DEEFV-----RRWQLAC---QGNIAHVVVMP 429 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~-g~~~~-~~~--~~-~iv~f~~~~---~~~~~-----~~~~l~~---~~~~lRv~~~~ 429 (476)
++++.++..++++++++.|++. |+... ..+ .+ .+++|..++ ..++. +++.... ..+.+|+++++
T Consensus 257 ~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~ 336 (355)
T cd00611 257 VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYN 336 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccC
Confidence 9999999999999999999998 64212 111 23 458888665 22221 3333221 13689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIEN 446 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~ 446 (476)
++|.+|||+|+++|+++
T Consensus 337 ~nt~edi~~l~~al~~~ 353 (355)
T cd00611 337 ALSLEGVQALADFMKEF 353 (355)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=197.65 Aligned_cols=290 Identities=9% Similarity=0.049 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+|+.+.+|.+.+. ..+++|+|+++|+..++.+..+ |++.|++++++|..+...++..|.+++.++.+
T Consensus 58 g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 135 (378)
T PRK07682 58 GLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIIN--PGDEVLIVEPSFVSYAPLVTLAGGVPVPVATT 135 (378)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC--CCCEEEEeCCCchhhHHHHHHcCCEEEEeecC
Confidence 56799999999999988875433 2599999999999988877765 89999999999999999999999999999875
Q ss_pred C--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 I--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
. ++.+|+++|++++.++++ +++++++.|+||.+-+ +++|+++|++|++ ++++|++|+.+.+.. ...
T Consensus 136 ~~~~~~~d~~~l~~~~~~~~~---~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~-~~~ 206 (378)
T PRK07682 136 LENEFKVQPAQIEAAITAKTK---AILLCSPNNPTGAVLNKSELEEIAVIVEKHDL-----IVLSDEIYAELTYDE-AYT 206 (378)
T ss_pred CccCCCCCHHHHHhhcCcccE---EEEEECCCCCcCcCcCHHHHHHHHHHHHHcCc-----EEEEehhhhhcccCC-CCC
Confidence 3 568999999998866543 6777889999999854 8899999999999 999999998765432 111
Q ss_pred C--CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 P--KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~--~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+ .+.....-.++..|+.|.++ +++++|++++++++++.+.....+.. .+ ...+.+.++...+ +..
T Consensus 207 ~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~-------~~---~~~~~q~a~~~~l~~~~~ 276 (378)
T PRK07682 207 SFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSM-------MC---APTMAQFAALEALRAGND 276 (378)
T ss_pred ChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhc-------cC---CCHHHHHHHHHHHhCChH
Confidence 1 11111123467778899987 78899999999887766543222210 01 1234444444444 223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecC----CcHHHh------hceeecc-------cCCEEEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERP----QDEEFV------RRWQLAC-------QGNIAHVV 426 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~----~~~~~~------~~~~l~~-------~~~~lRv~ 426 (476)
.+++..+++.++++++.+.|++.|+.. ..+..+.+.| ..+ ++.++. +++.+.. ..+++|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis 355 (378)
T PRK07682 277 DVIRMRDSYRKRRNFFVTSFNEIGLTC-HVPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCS 355 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcc-CCCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEE
Confidence 466777888899999999999987643 3444444433 331 122222 1333321 24789999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+.. +.++++..++.|++..++
T Consensus 356 ~~~--~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 356 YAT--SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred eCC--CHHHHHHHHHHHHHHHhh
Confidence 874 689999999999887653
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=201.59 Aligned_cols=298 Identities=17% Similarity=0.027 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
+..++++++++|+.+.+|.+.++.++++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+++.
T Consensus 109 G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~ 186 (462)
T PLN02187 109 GILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLAR--PNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186 (462)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcC--CCCEEEEeCCCCccHHHHHHHcCCEEEEEeCcc
Confidence 567899999999988777654555799999999999999888765 99999999999999999999999999999884
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.++.+|+++|++++.++++ ++++++|+|+||.+-+ +++|+++|++||+ ||++|++|+.+.+......+
T Consensus 187 ~~~~~~d~~~l~~~~~~~~~---~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i-----~iI~DE~Y~~l~f~~~~~~s 258 (462)
T PLN02187 187 EKEWEIDLEGIEAIADENTV---AMVVINPNNPCGNVYSHDHLKKVAETARKLGI-----MVISDEVYDRTIFGDNPFVS 258 (462)
T ss_pred ccCCccCHHHHHHhcCCCcE---EEEEeCCCCCCCCccCHHHHHHHHHHHHHCCC-----EEEEeccccccccCCCCcee
Confidence 3578999999998866554 7888889999999866 8899999999999 99999999876553211111
Q ss_pred CCCCcccc-cEEEEcCCCC-CCCCCCceeEEeeh-h-h---hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-
Q 011842 291 KVSFKKPI-GSVSVSGHKF-VGCPMPCGVQITRM-E-H---INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG- 362 (476)
Q Consensus 291 ~~~~~~~~-Dsi~~s~hK~-l~~p~~~G~l~~~~-~-~---~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g- 362 (476)
...+.... -++..|+.|. +.+++++||+++.+ + . ++.+.....+. .+..+. ..+.++++...+.
T Consensus 259 ~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~-----~~~~~~---s~~~Q~a~~~~L~~ 330 (462)
T PLN02187 259 MGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNL-----DVTPDP---ATIIQAALPAILEK 330 (462)
T ss_pred HHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhc-----cccCCC---CHHHHHHHHHHHhc
Confidence 11111111 2344567776 88899999999853 2 2 12222111111 011111 1344444444442
Q ss_pred --hhcHHHHHHHHHHHHHHHHHHHHhcCCeE-eecC-CeeEEEEecC--------CcHHHhh------ceee-cc----c
Q 011842 363 --YKGFQKEVQKCLRNAHYLKDRLLDAGISA-MLNE-LSSTVVFERP--------QDEEFVR------RWQL-AC----Q 419 (476)
Q Consensus 363 --~~g~~~~~~~~~~~a~~l~~~L~~~g~~~-~~~~-~~~iv~f~~~--------~~~~~~~------~~~l-~~----~ 419 (476)
.+-+++..+.+.++++++.+.|++.+... ...| .++.+.+..+ ++.++.. +..+ +. .
T Consensus 331 ~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~ 410 (462)
T PLN02187 331 ADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGL 410 (462)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCC
Confidence 23467777888889999999999876543 2234 4455555432 1222221 2222 21 2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.+++|+++. +.++.++..++.|.+..++.+|.
T Consensus 411 ~~~iRis~~--~~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 411 KNWMRITIG--VEAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred CCeEEEEeC--CCHHHHHHHHHHHHHHHHHhhhc
Confidence 478999986 46899999999999988776653
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=197.81 Aligned_cols=284 Identities=14% Similarity=0.075 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++.+++. ++++ ..+++|+|+++|+..++.+... ||+.|+++.++|.++...++..|++++.+|++.+
T Consensus 64 ~~~lr~~ia~~~~---~~~~--~~vi~t~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~ 136 (373)
T PRK07324 64 SPEFKEAVASLYQ---NVKP--ENILQTNGATGANFLVLYALVE--PGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEE 136 (373)
T ss_pred CHHHHHHHHHHhc---CCCh--hhEEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccc
Confidence 4577777766653 3443 3589999999999999888765 8999999999999999999999999999998743
Q ss_pred --CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 217 --GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 217 --g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+|+++|++.+.++++ +|++++++|+||.+-+ +++|+++|++||+ ++++|++|...... ....+.
T Consensus 137 ~~~~~d~~~l~~~~~~~~k---li~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~-----~ii~De~y~~l~~~-~~~~s~ 207 (373)
T PRK07324 137 NGWLPDLDELRRLVRPNTK---LICINNANNPTGALMDRAYLEEIVEIARSVDA-----YVLSDEVYRPLDED-GSTPSI 207 (373)
T ss_pred cCCCCCHHHHHHhCCCCCc---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEccccccccC-CCCCCh
Confidence 45899999998876655 8888999999999977 8999999999999 99999999765442 111111
Q ss_pred CCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGFQK 368 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~~~ 368 (476)
.+..+. .+...++.|.++ +++++|++++++++++.+.....|. ++.. ..+.++++...+. ..-+++
T Consensus 208 ~~~~~~-~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~-----~~~~-----~~~~q~~a~~~l~~~~~~l~~ 276 (373)
T PRK07324 208 ADLYEK-GISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYT-----MICA-----GVFDDMLASLALEHRDAILER 276 (373)
T ss_pred hhccCC-EEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcE-----EecC-----ChHHHHHHHHHHcCHHHHHHH
Confidence 222122 245567889876 7899999999877766664333331 1111 1244444444432 122444
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecC---CcHHHhh------ceee-cc----cCCEEEEEEcCCCCH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERP---QDEEFVR------RWQL-AC----QGNIAHVVVMPNVTI 433 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~---~~~~~~~------~~~l-~~----~~~~lRv~~~~~~T~ 433 (476)
..+...++++.+.+.|++.+......| .++..++..+ +..++.+ +..+ +. ..+.+|+++. .++
T Consensus 277 ~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~--~~~ 354 (373)
T PRK07324 277 NRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC--CDT 354 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEec--CCH
Confidence 555566677888888887643333334 3333333332 2233332 2222 21 1368999886 357
Q ss_pred HHHHHHHHHHHHHHHH
Q 011842 434 DKLDDFLNELIENRST 449 (476)
Q Consensus 434 edid~~~~~l~~~~~~ 449 (476)
+.++..++.|.+..++
T Consensus 355 ~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 355 ETLKKGLKKLSEFLRE 370 (373)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888776653
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=187.66 Aligned_cols=288 Identities=14% Similarity=0.137 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
.....+.+.+++|.+-+. ..+.++...||-..+...-...|+.+|+.++-.|.|+...+|-.++.-..+.++
T Consensus 216 ~~hv~LE~eLA~LHqK~a----ALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHN---- 287 (570)
T KOG1360|consen 216 KHHVRLEAELADLHQKEA----ALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHN---- 287 (570)
T ss_pred chhhhHHHHHHHHhcCcc----eeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccC----
Confidence 455555666888877664 566667777877776666566799999999999999999999999988888888
Q ss_pred cCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCCCCCCcc
Q 011842 219 IDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAPKVSFKK 296 (476)
Q Consensus 219 ~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~~~~~~~ 296 (476)
|+++|+++|+.. ...|.+|.+....+|+|++-||+||++++++||+ +..+|++|+.+.+ |-..+...-++..
T Consensus 288 -D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGA-----iTFlDEVHAVGlYG~rGaGvgerdGvm 361 (570)
T KOG1360|consen 288 -DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGA-----ITFLDEVHAVGLYGPRGAGVGERDGVM 361 (570)
T ss_pred -CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCc-----eeeeehhhhhccccCCCCCccccCCcc
Confidence 999999999875 5578899999999999999999999999999999 9999999985544 4333433345543
Q ss_pred -cccEEEEcCCCCCCCCCCceeEEeehhhhhhhc-CCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHH
Q 011842 297 -PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKC 373 (476)
Q Consensus 297 -~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~-~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~ 373 (476)
.+|+|+.+..|.+|+ -.|++.....+++.+. ..+-|++... -+..-......+.+.+. .+| +...+..
T Consensus 362 ~kvDiIsGTLgKafGc--VGGYIAat~~LvDmiRSyAaGFIFTTS------LPP~vl~GAleaVr~lk~~eg-~~lR~~h 432 (570)
T KOG1360|consen 362 HKVDIISGTLGKAFGC--VGGYIAATRKLVDMIRSYAAGFIFTTS------LPPMVLAGALEAVRILKSEEG-RVLRRQH 432 (570)
T ss_pred hhhhhcccchhhhccc--ccceehhhhhHHHHHHHhcCceEEecC------CChHHHHhHHHHHHHHhhhhh-HHHHHHH
Confidence 499999999999885 2456666666766552 2334444322 11111112223333332 233 4455666
Q ss_pred HHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc-------HHHhhcee----------ecccCCEEEEEEcCCCCHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD-------EEFVRRWQ----------LACQGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~-------~~~~~~~~----------l~~~~~~lRv~~~~~~T~edi 436 (476)
+++.+|+++.|.+.|+.++. -.+.|+..++.+. +.++.+.+ ++.+...+|+..+|++|++.+
T Consensus 433 qrnv~~~kq~l~~~GiPVi~-~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm 511 (570)
T KOG1360|consen 433 QRNVKYVKQLLMELGIPVIP-NPSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMM 511 (570)
T ss_pred HHHHHHHHHHHHHcCCcccC-CCcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHH
Confidence 77899999999999987654 4466777777653 23333332 233457899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRSTW 450 (476)
Q Consensus 437 d~~~~~l~~~~~~~ 450 (476)
+.|+++|..+.++.
T Consensus 512 ~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 512 NILVNALLDVWNEV 525 (570)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999887765
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-21 Score=207.13 Aligned_cols=303 Identities=15% Similarity=0.166 Sum_probs=213.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCCeE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEC 208 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~~v 208 (476)
.+.-++-.++.+++++++|++.. .+.-.+|+++++.++++.|.+ ..+.+|+++...|.+....+...|+++
T Consensus 539 QG~lq~i~elq~~l~eLtGmd~~---Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieV 615 (954)
T PRK12566 539 EGYRAMIDELEAWLCAITGFDAI---CMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRV 615 (954)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeE---eecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEE
Confidence 36677888888999999999852 344458889998888887652 135689999999977777788899999
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+.||++++|.+|+++|++++++...+...|.++++++..+..+|+++|+++++++|+ ++++|+|+.........
T Consensus 616 v~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Ga-----lv~vDgA~~~a~~~l~~- 689 (954)
T PRK12566 616 VIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGG-----QVYMDGANLNAQVGLAR- 689 (954)
T ss_pred EEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCC-----EEEEEeeChhhccCCCC-
Confidence 999999899999999999998544455678888998887777889999999999999 99999998643332111
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeeh-hhhh----hhcCCccc-cCCC---CCc--ccCCCCChhHHHHHHH
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM-EHIN----VLSSNVEY-LASR---DAT--IMGSRNGHAPIFLWYT 357 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~----~l~~~~~y-l~~~---~~~--~~~sr~~~~~l~~~~~ 357 (476)
....++|++++++|||++.|.+.|..++.. ...+ .+...+.. ..+. ..+ -.++-++...+..|..
T Consensus 690 ----Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Y 765 (954)
T PRK12566 690 ----PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMY 765 (954)
T ss_pred ----hhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHH
Confidence 122349999999999999999988887765 2222 11211100 0000 000 1111111224567777
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC---C---eeEEEEe-cCC----c-HHHhh-----ceeec---
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE---L---SSTVVFE-RPQ----D-EEFVR-----RWQLA--- 417 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~---~---~~iv~f~-~~~----~-~~~~~-----~~~l~--- 417 (476)
++.+|.+ +.+.....+.+++|+.++|.+ ++.....+ . ..++.++ .++ + .++.+ ++..+
T Consensus 766 i~~lG~e-Lk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~ 843 (954)
T PRK12566 766 IAMMGPQ-LADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMS 843 (954)
T ss_pred HHHHCHH-HHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEe
Confidence 8888988 888888889999999999987 33333222 1 1222222 221 1 22322 22222
Q ss_pred -ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 418 -CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 418 -~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
...+.+|++.+...|++|||+|+++|+++.+++.+
T Consensus 844 fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~ 879 (954)
T PRK12566 844 FPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIGK 879 (954)
T ss_pred eccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 23678999999999999999999999999988754
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-21 Score=197.25 Aligned_cols=291 Identities=15% Similarity=0.033 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|...++..+++|+|+++|+..++.+... ||+.|++++++|..+...++..|++++.+++++
T Consensus 74 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~ 151 (409)
T PLN02656 74 GLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLAR--PGANILLPRPGFPIYELCAAFRHLEVRYVDLLP 151 (409)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhC--CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCC
Confidence 345899999999988777654445699999999999988887765 999999999999988888899999999999853
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++++.++++ ++++++++|+||.+ +++++|+++|++||+ ||++|++|+.+.+......+
T Consensus 152 ~~~~~~d~~~l~~~~~~~~~---~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~ 223 (409)
T PLN02656 152 EKGWEVDLDAVEALADQNTV---ALVIINPGNPCGNVYSYQHLKKIAETAEKLKI-----LVIADEVYGHLAFGSNPFVP 223 (409)
T ss_pred cCCCCCCHHHHHHHhccCce---EEEEECCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEehhhhhcccCCCCccc
Confidence 357999999998876554 77788899999999 579999999999999 99999999876553222111
Q ss_pred CCCCccc-ccEEEEcCCCC-CCCCCCceeEEeeh--------hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 291 KVSFKKP-IGSVSVSGHKF-VGCPMPCGVQITRM--------EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~-l~~p~~~G~l~~~~--------~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
...+... --++..|+.|. +.+++++|+++.++ ++++.+....... .+. ..+.++++...
T Consensus 224 ~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---s~~~q~a~~~~ 292 (409)
T PLN02656 224 MGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDIL--------GGP---ATFIQAAVPTI 292 (409)
T ss_pred HHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhh--------cCC---CHHHHHHHHHH
Confidence 1111111 12455677885 88899999999852 3444442211111 111 13444444444
Q ss_pred hC---hhcHHHHHHHHHHHHHHHHHHHHhcCCeE-eecC-CeeEEEEecC--------CcHHHh------hceee-cc--
Q 011842 361 KG---YKGFQKEVQKCLRNAHYLKDRLLDAGISA-MLNE-LSSTVVFERP--------QDEEFV------RRWQL-AC-- 418 (476)
Q Consensus 361 ~g---~~g~~~~~~~~~~~a~~l~~~L~~~g~~~-~~~~-~~~iv~f~~~--------~~~~~~------~~~~l-~~-- 418 (476)
+. ...+++..++..++++++.+.|++.+... ...| .+..+.++.+ ++.++. ++..+ +.
T Consensus 293 l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~ 372 (409)
T PLN02656 293 LEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTA 372 (409)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchh
Confidence 42 23467777888888999999998875432 2234 3444554443 122222 12222 21
Q ss_pred --cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 --~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+++|+++.. +.++++..+..|+++...
T Consensus 373 fg~~~~iRi~~~~--~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 373 VGLKNWLRITFAA--DPSSLEEALGRIKSFYLR 403 (409)
T ss_pred cCCCCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 23689999984 688888888888776654
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=197.49 Aligned_cols=287 Identities=12% Similarity=0.058 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++++++++|++.+. ..+++|+|+++++..++++... ||+.|++++++|..+...++..|++++.+|.+
T Consensus 67 G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 144 (384)
T PRK12414 67 GIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVH--PGDEVIYFEPSFDSYAPIVRLQGATPVAIKLS 144 (384)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcC--CCCEEEEeCCCccchHHHHHHcCCEEEEEecC
Confidence 56799999999999999986322 3599999999999988887765 99999999999999999999999999999987
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
. ++.+|++.|++++.+++ .+|++++++|+||.+ +++++|+++|++||+ ++++|++|+-+.+......+
T Consensus 145 ~~~~~~d~~~l~~~l~~~~---~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~-----~ii~De~Y~~~~~~~~~~~~ 216 (384)
T PRK12414 145 PEDFRVNWDEVAAAITPRT---RMIIVNTPHNPSATVFSAADLARLAQLTRNTDI-----VILSDEVYEHVVFDGARHHS 216 (384)
T ss_pred ccccccCHHHHHhhcCccc---EEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCe-----EEEEhhhhhhccCCCCCccC
Confidence 4 56799999999986544 377788999999997 568999999999999 99999999865543211111
Q ss_pred CCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcH
Q 011842 291 KVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGF 366 (476)
Q Consensus 291 ~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~ 366 (476)
..... ..-.++..|++|.++ .++++|++++++++++.+.....+. .+..+ .+.++++...+.. ..+
T Consensus 217 ~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~-----~~~~s-----~~~q~a~~~~l~~~~~~ 286 (384)
T PRK12414 217 MARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFM-----VFSAD-----TPMQHAFAEALAEPASY 286 (384)
T ss_pred cccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhhe-----ecCCC-----cHHHHHHHHHhcCChHH
Confidence 11111 112367788999884 8899999999988766553322221 01111 2344444444422 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecCC-----cHHHh------hceee-cc--------cCCEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERPQ-----DEEFV------RRWQL-AC--------QGNIAHV 425 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~~-----~~~~~------~~~~l-~~--------~~~~lRv 425 (476)
.+..+.+.++++++.+.|++.|+. +.++..+.+.| +.+. +.++. ++..+ +. ..+++|+
T Consensus 287 ~~~~~~~~~~r~~l~~~L~~~g~~-~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi 365 (384)
T PRK12414 287 LGLGAFYQRKRDLLARELAGSRFE-LLPSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRL 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-ecCCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEE
Confidence 455667778889999999998754 34454444444 4321 22222 12222 11 1368999
Q ss_pred EEcCCCCHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~ 445 (476)
++.. ++++++..++.|.+
T Consensus 366 s~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 366 SFSK--DDATLVEGARRLCS 383 (384)
T ss_pred EecC--CHHHHHHHHHHHhh
Confidence 9884 57888877777653
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-21 Score=194.38 Aligned_cols=326 Identities=13% Similarity=0.096 Sum_probs=210.7
Q ss_pred hcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH
Q 011842 93 MERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL 172 (476)
Q Consensus 93 ~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~ 172 (476)
+..+++|+|..............+..++.+..+....+++ .....++.+.+++++|.+. .+++++|+.++.
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~-----~~~~~~LE~~lA~~~g~e~----al~~~sG~~a~~ 72 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGT-----IDAHLELEQCMAEFLGTES----AILYSDGASTTS 72 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCC-----hHHHHHHHHHHHHHhCCCc----EEEecCcHHHHH
Confidence 4566778884443322212222233444444444333332 2356677777888898863 788889999998
Q ss_pred HHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHc---C--------CCCcEEEEEe
Q 011842 173 HGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ---N--------KDKPAIINVN 241 (476)
Q Consensus 173 ~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~---~--------~~~p~~vv~t 241 (476)
.++.+... |+|.|++++..|.|+...+++.+++++.++++ |++++++.++. . +.++.+|++.
T Consensus 73 ~~i~~l~~--~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E 145 (392)
T PLN03227 73 STVAAFAK--RGDLLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVE 145 (392)
T ss_pred HHHHHhCC--CCCEEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEc
Confidence 88777654 99999999999999999988889988888875 55555554422 1 1234578888
Q ss_pred eCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccC-CCCCC--cccccEEEEcCCCCCCCCCCcee
Q 011842 242 IGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKA-PKVSF--KKPIGSVSVSGHKFVGCPMPCGV 317 (476)
Q Consensus 242 ~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~-~~~~~--~~~~Dsi~~s~hK~l~~p~~~G~ 317 (476)
..++++|.+.|+++|.++|++||+ ++++|++|+.+.. ...+.. ..+.. ...+|+++.+.+|+++ +..|+
T Consensus 146 ~v~~~~G~i~~l~~i~~l~~~~g~-----~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g--~~gg~ 218 (392)
T PLN03227 146 GLYKNTGTLAPLKELVALKEEFHY-----RLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG--SVGGM 218 (392)
T ss_pred CCcCCCCcccCHHHHHHHHHHcCC-----EEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh--ccCcE
Confidence 889999999999999999999999 9999999973322 111111 00111 2247999999999876 44577
Q ss_pred EEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHh-ChhcHHHHHHHHHHHHHHHHHHHHhcCCeE----
Q 011842 318 QITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRK-GYKGFQKEVQKCLRNAHYLKDRLLDAGISA---- 391 (476)
Q Consensus 318 l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---- 391 (476)
++.+.+.++.+.. ...+ ++.++- .++.+|+++..+ .....++++++..+++++|+++|++.++..
T Consensus 219 v~~~~~~~~~~~~~~~~~------~~~~~~---~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~ 289 (392)
T PLN03227 219 TVGSEEVVDHQRLSGSGY------CFSASA---PPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKL 289 (392)
T ss_pred EecCHHHHHHHHHhCcCc------cccCCC---CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 7777776544321 1111 222221 133444444333 112235678889999999999998754321
Q ss_pred ------eecCCeeEEEEecCCcH------------HH-----hhceeecc-c-----------CCEEEEEEcCCCCHHHH
Q 011842 392 ------MLNELSSTVVFERPQDE------------EF-----VRRWQLAC-Q-----------GNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 392 ------~~~~~~~iv~f~~~~~~------------~~-----~~~~~l~~-~-----------~~~lRv~~~~~~T~edi 436 (476)
.....++++.+...+.. .+ .+++.+.. . ...+|++++..+|+|||
T Consensus 290 rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei 369 (392)
T PLN03227 290 RNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDI 369 (392)
T ss_pred ccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHH
Confidence 11234667777654310 22 12333311 0 35689999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRSTW 450 (476)
Q Consensus 437 d~~~~~l~~~~~~~ 450 (476)
|+++++|+++.+.+
T Consensus 370 ~~~~~~l~~~~~~~ 383 (392)
T PLN03227 370 DKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998775
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=193.19 Aligned_cols=281 Identities=12% Similarity=0.094 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
.+..++++++++++|.+ ..+++++|+++++.++.+... |++.|+++++.|.++..++++.|++++.++..
T Consensus 84 ~~~~~l~~~la~~~~~~----~~i~~~~g~~~~~~~l~~~~~--~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 153 (385)
T PRK05958 84 PAHEALEEELAEWFGAE----RALLFSSGYAANLAVLTALAG--KGDLIVSDKLNHASLIDGARLSRARVRRYPHN---- 153 (385)
T ss_pred HHHHHHHHHHHHHhCCC----cEEEECcHHHHHHHHHHHhCC--CCCEEEEeCccCHHHHHHHHhcCCceEEeCCC----
Confidence 56677888888888853 267777888998877766544 89999999999999999999999999888764
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-cccc-CCCCCCcc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKK-APKVSFKK 296 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~-~~~~~~~~ 296 (476)
|++.+++.+++..+...+++++...+++|.+.|+++|+++|++||+ |+++|++|+.+.+. .... ........
T Consensus 154 -d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~-----~li~De~~~~g~~~~~g~~~~~~~~~~~ 227 (385)
T PRK05958 154 -DVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGA-----WLLVDEAHGTGVLGPQGRGLAAEAGLAG 227 (385)
T ss_pred -CHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCC-----EEEEECcccccccCCCCCchHHhhCCCC
Confidence 8999999997642234566676778899999999999999999999 99999999755432 1111 10011112
Q ss_pred c-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 297 P-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 297 ~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
. .+++..++||+++. .+ |+++.++++.+.+... ..|.. .++.+.......+++++.+.. . .+..+++.
T Consensus 228 ~~~~i~~~s~sK~~~~-~G-g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~ 297 (385)
T PRK05958 228 EPDVILVGTLGKALGS-SG-AAVLGSETLIDYLINRARPFIF------TTALPPAQAAAARAALRILRR-E-PERRERLA 297 (385)
T ss_pred CCceEEEEechhhccc-CC-cEEEcCHHHHHHHHHhCcccee------cCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHH
Confidence 2 34677889999974 34 7887777665544211 12211 111211222234445554422 2 56778889
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh-----hceeecc--------cCCEEEEEEcCCCCHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKLDD 438 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edid~ 438 (476)
++++++.+.|++.++. +.++.++++.|..+.. .++. ++..+.. ..+.+|++++..+|++++++
T Consensus 298 ~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~ 376 (385)
T PRK05958 298 ALIARLRAGLRALGFQ-LMDSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDR 376 (385)
T ss_pred HHHHHHHHHHHHcCCC-cCCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHH
Confidence 9999999999988764 3445566777766531 2232 2223321 13689999999999999999
Q ss_pred HHHHHHHH
Q 011842 439 FLNELIEN 446 (476)
Q Consensus 439 ~~~~l~~~ 446 (476)
+++.|+++
T Consensus 377 ~l~~l~~~ 384 (385)
T PRK05958 377 LLEALAEA 384 (385)
T ss_pred HHHHHHhc
Confidence 99999765
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-21 Score=195.22 Aligned_cols=291 Identities=11% Similarity=0.042 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|...+...+++|+|+++|+..++.+... +++.|+++++.|..+..+++.+|++++.+++++
T Consensus 69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 146 (393)
T PRK05764 69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD--PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGE 146 (393)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcC--CCCEEEecCCCCcchHHHHHHcCCEEEEEecCc
Confidence 567899999999988877644445699999999999988887755 899999999999999999999999999999874
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|++.|++++.+.++ +|++++++|++|.+- ++++|+++|++||+ |+++|++|+.+.+......+
T Consensus 147 ~~~~~~d~~~l~~~l~~~~~---~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~ 218 (393)
T PRK05764 147 ENGFKLTVEQLEAAITPKTK---ALILNSPSNPTGAVYSPEELEAIADVAVEHDI-----WVLSDEIYEKLVYDGAEFTS 218 (393)
T ss_pred ccCCcCCHHHHHHhhCccce---EEEEECCCCCCCcccCHHHHHHHHHHHHHCCc-----EEEEeccccceeeCCCCccc
Confidence 357899999999865543 777888999999984 58899999999999 99999999865542111111
Q ss_pred CCCC--c-ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hh
Q 011842 291 KVSF--K-KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YK 364 (476)
Q Consensus 291 ~~~~--~-~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~ 364 (476)
.... . ...+++..++.|.++ .++++|+++.++++++.+.....+. ... ...+.++++.+.+. ..
T Consensus 219 ~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~-------~~~---~~~~~q~~~~~~l~~~~~ 288 (393)
T PRK05764 219 IASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHS-------TSN---PTSIAQYAAVAALNGPQD 288 (393)
T ss_pred HHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhc-------ccC---CChHHHHHHHHHHcCChH
Confidence 1111 1 124567788899987 6778999998887766553211110 001 12345555555542 33
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCe-eEEEEecCC--------cHHHh----h--ceeecc-----cCCEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELS-STVVFERPQ--------DEEFV----R--RWQLAC-----QGNIA 423 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~-~iv~f~~~~--------~~~~~----~--~~~l~~-----~~~~l 423 (476)
.+++..++..++++++.+.|++. |+.. .++.. ..+.+..+. +.++. + ++.+.. ..+++
T Consensus 289 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~v 367 (393)
T PRK05764 289 EVEEMRQAFEERRDLMVDGLNEIPGLEC-PKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYV 367 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcc-cCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEE
Confidence 45566777778888999999987 6543 33443 344333332 12322 2 233321 14789
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
|+++. .++++++..++.|.+..++
T Consensus 368 Ris~~--~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 368 RLSYA--TSLEDLEEGLERIERFLES 391 (393)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHHh
Confidence 99876 4799999999999887653
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=195.45 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHH--cCCeE--EEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARM--YRMEC--VKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~--~G~~v--~~v 211 (476)
..++|+.+.+.+++++|.+. ..+++++|+.||+.++.+... ||+.|+++...|.+ +...++. .+... +.+
T Consensus 72 ~~~lE~~~~~~la~l~g~~~---alv~~~SG~~A~~~~l~al~~--~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (416)
T PRK13034 72 VDEVEALAIERAKQLFGCDY---ANVQPHSGSQANGAVYLALLK--PGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQY 146 (416)
T ss_pred HHHHHHHHHHHHHHHhCCCc---eEEecCCcHHHHHHHHHHhcC--CCCEEEEcCccceeeeecCCcceeccceeeeEEc
Confidence 45666656669999999874 135578999999999888765 99999999999987 3333332 12222 345
Q ss_pred eCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 212 DCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 212 ~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+++. ++.+|+++|++.+... +|.+|++. .+..|..-|+++|.++|++||+ ++++|+||+.+........
T Consensus 147 ~~~~~~~~~d~~~le~~l~~~--~~klVi~~--~~~~g~~~dl~~l~~la~~~g~-----~livD~Aha~G~~~~g~~~- 216 (416)
T PRK13034 147 GVDRLTGLIDYDEVEELAKEH--KPKLIIAG--FSAYPRELDFARFREIADEVGA-----LLMVDMAHIAGLVAAGEHP- 216 (416)
T ss_pred ccccccCCcCHHHHHHHHhhc--CCeEEEEC--CCccccccCHHHHHHHHHHcCC-----EEEEeCcccccCcccCCCC-
Confidence 5542 4679999999998653 23466553 2446777899999999999999 9999999986655322211
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
... ..+|++++++|||+++|.| |+++++++.+ ..+.. +++. ++..+.......++..++...-..+..++
T Consensus 217 -~~~-~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~aa~~~al~~~~~~~~~~~ 287 (416)
T PRK13034 217 -NPF-PHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINS---AVFP---GLQGGPLMHVIAAKAVAFGEALQPEFKTY 287 (416)
T ss_pred -CCC-CCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHh---hcCC---cccCCccHHHHHHHHHHHHHHhChhHHHH
Confidence 111 2489999999999987775 6666665433 22211 1111 11111111111222223332212334567
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC---c-HHH---h--hceeecc-----------cCCEEEEEEc
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ---D-EEF---V--RRWQLAC-----------QGNIAHVVVM 428 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~---~-~~~---~--~~~~l~~-----------~~~~lRv~~~ 428 (476)
.++.++++++|+++|++.|+..+.+ ..++++.+...+ . ..+ . +++.+.. ....+|++++
T Consensus 288 ~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~ 367 (416)
T PRK13034 288 AKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTP 367 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcH
Confidence 8999999999999999998866532 346666655432 2 112 1 2333321 2357999988
Q ss_pred C----CCCHHHHHHHHHHHHHHHH
Q 011842 429 P----NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 429 ~----~~T~edid~~~~~l~~~~~ 448 (476)
. .+|++||++++++|.++..
T Consensus 368 ~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 368 AGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 7 7789999999999998865
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-21 Score=193.71 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
.+..++++.+++++|.+. .+++++|+++++.++.++.. |++.|+++++.|.++...+++.|++++.++.
T Consensus 61 ~~~~~l~~~la~~~~~~~----~i~~~~G~~~~~~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~----- 129 (360)
T TIGR00858 61 PLHEELEEELAEWKGTEA----ALLFSSGYLANVGVISALVG--KGDLILSDALNHASLIDGCRLSGARVRRYRH----- 129 (360)
T ss_pred HHHHHHHHHHHHHhCCCC----EEEECchHHHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEecC-----
Confidence 455566677777777542 55556668888877666544 8999999999999999999999999988874
Q ss_pred cCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc-cc-CCCCCCc
Q 011842 219 IDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-KK-APKVSFK 295 (476)
Q Consensus 219 ~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~~-~~~~~~~ 295 (476)
+|+++|++.+.+.+ .++.+|++.+..+++|.+.|+++|.++|++||+ ++++|++|+.+.++.. .. .......
T Consensus 130 ~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~~~ 204 (360)
T TIGR00858 130 NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGA-----WLMVDDAHGTGVLGEDGRGTLEHFGLK 204 (360)
T ss_pred CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCc-----EEEEECcccccCcCCCCCchHHhcCCC
Confidence 48999999997643 233567677778999999999999999999999 9999999975443211 10 1111222
Q ss_pred -ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 296 -KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 296 -~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
...+++..+++|+++. .+ |+++.++++.+.+... ..+. ..++.+.....+..++++.+. ..++..++.
T Consensus 205 ~~~~~i~i~s~sK~~~~-~g-G~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~ 274 (360)
T TIGR00858 205 PEPVDIQVGTLSKALGS-YG-AYVAGSQALIDYLINRARTLI------FSTALPPAVAAAALAALELIQ--EEPWRREKL 274 (360)
T ss_pred ccCCcEEEEechhhhhc-cC-cEEEcCHHHHHHHHHhCccce------ecCCCCHHHHHHHHHHHHHHh--hCHHHHHHH
Confidence 2368888999999984 33 8888887766554321 1111 111121121223334444332 235677889
Q ss_pred HHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeec--------ccCCEEEEEEcCCCCHHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLA--------CQGNIAHVVVMPNVTIDKLD 437 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~--------~~~~~lRv~~~~~~T~edid 437 (476)
.++++++.+.|++.++. +.++.++++.+..+. ..++. +++.+. ...+.+|++++..+|++|++
T Consensus 275 ~~~~~~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~ 353 (360)
T TIGR00858 275 LALIARLRAGLEALGFT-LMPSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDID 353 (360)
T ss_pred HHHHHHHHHHHHHcCCc-cCCCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHH
Confidence 99999999999998764 335556677666553 22232 233331 12358999999999999999
Q ss_pred HHHHHHH
Q 011842 438 DFLNELI 444 (476)
Q Consensus 438 ~~~~~l~ 444 (476)
+++++|+
T Consensus 354 ~~l~~l~ 360 (360)
T TIGR00858 354 RLAEALK 360 (360)
T ss_pred HHHHhhC
Confidence 9999873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=193.64 Aligned_cols=287 Identities=12% Similarity=0.052 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++.+.+++.+..|++.++.++++|+|+++|+..++.+... ||+.|++++++|.++...++..|.+++.+|++.
T Consensus 70 g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 147 (387)
T PRK08960 70 GLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVD--PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGP 147 (387)
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCc
Confidence 567899999999988878765556799999999999988877755 999999999999999999999999999999875
Q ss_pred C--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 S--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ +.+|++.|++.+.++++ ++++++++|+||.+-+ +++|+++|++||+ ++++|++|..+.+.. ...+
T Consensus 148 ~~~~~~d~~~l~~~~~~~~~---~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~li~De~Y~~~~~~~-~~~~ 218 (387)
T PRK08960 148 DSRYQLTPALVERHWNADTV---GALVASPANPTGTLLSRDELAALSQALRARGG-----HLVVDEIYHGLTYGV-DAAS 218 (387)
T ss_pred ccCCCCCHHHHHHHhCccce---EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC-----EEEEEccccccccCC-CCCC
Confidence 4 47999999998876654 6778889999999876 5677778999999 999999997654421 1112
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---hhcH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---YKGF 366 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~~g~ 366 (476)
.....+ -.++..|++|.++ .++++|++++++++++.+.....+.. ...+ .+.+.++...+. ...+
T Consensus 219 ~~~~~~-~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~-----~~~s-----~~~q~a~~~~l~~~~~~~l 287 (387)
T PRK08960 219 VLEVDD-DAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLY-----ISAS-----TPAQHAALACFEPETLAIL 287 (387)
T ss_pred hhhccC-CEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhc-----cCCC-----HHHHHHHHHHhhcCcHHHH
Confidence 122211 2256678999884 88999999999887665532222110 1111 233333333331 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEee-cCCeeEEEEecCC----cHHHh------hceeecc--------cCCEEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAML-NELSSTVVFERPQ----DEEFV------RRWQLAC--------QGNIAHVVV 427 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~iv~f~~~~----~~~~~------~~~~l~~--------~~~~lRv~~ 427 (476)
++..+...++++.+.+.|++.|+.... +...+.+.+..++ +.++. .+..+.. ..+++|+++
T Consensus 288 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~ 367 (387)
T PRK08960 288 EARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAY 367 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEe
Confidence 556667777888899999988765433 3344555555432 22222 1333321 136899998
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~ 446 (476)
.. +.+.+...++.|.+.
T Consensus 368 ~~--~~~~l~~al~~l~~~ 384 (387)
T PRK08960 368 TQ--SLPRLQEAVERIARG 384 (387)
T ss_pred cC--CHHHHHHHHHHHHHH
Confidence 84 456655555555443
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=200.99 Aligned_cols=288 Identities=14% Similarity=0.067 Sum_probs=199.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..+.+.++++.+++++|.+. ..++++|++ ++..++.+... ++++|+++...|+++..++++.|.+++.++++
T Consensus 152 ~~~~~~~Lee~La~~~~~~~---~i~~s~G~~-a~~sai~a~~~--~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-- 223 (481)
T PLN02822 152 TIDVHLDCETKIAKFLGTPD---SILYSYGLS-TIFSVIPAFCK--KGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-- 223 (481)
T ss_pred CHHHHHHHHHHHHHHhCCCC---EEEECCHHH-HHHHHHHHhCC--CCCEEEEeCCccHHHHHHHHHcCCeEEEECCC--
Confidence 45777888888999998653 266666555 77777776655 89999999999999999999999999999987
Q ss_pred CccCHHHHHHHHHcC------CCCc-EEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-cccc
Q 011842 217 GEIDCADFKAKLLQN------KDKP-AIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKK 288 (476)
Q Consensus 217 g~~D~~~Le~~l~~~------~~~p-~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~ 288 (476)
|.++|+..+++. ++++ .+|+++...+++|.+.|+++|.++|++||+ ++++|++|+.+++. ..+.
T Consensus 224 ---d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~-----~LIvDEa~s~gvlG~~G~G 295 (481)
T PLN02822 224 ---DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRF-----RVLLDESNSFGVLGKSGRG 295 (481)
T ss_pred ---CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCC
Confidence 677777766531 1122 477777788999999999999999999999 99999999855432 1111
Q ss_pred C-CCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhC-hh
Q 011842 289 A-PKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YK 364 (476)
Q Consensus 289 ~-~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~ 364 (476)
. ..+... ..+|+++.++.|.++. . .|+++.+.+.++.+.. ...|. +.++.+ +..+.+++..+. .+
T Consensus 296 ~~e~~~v~~~~~dii~~s~sKalg~-~-GG~i~g~~~ii~~~~~~~~~~~------fsa~lP---p~~~~Aa~~aL~~l~ 364 (481)
T PLN02822 296 LSEHFGVPIEKIDIITAAMGHALAT-E-GGFCTGSARVVDHQRLSSSGYV------FSASLP---PYLASAAITAIDVLE 364 (481)
T ss_pred hHHHcCCCCCCCeEEEecchhhhhh-C-CeEEEcCHHHHHHHHhcCCcee------eccccC---HHHHHHHHHHHHHHH
Confidence 1 012221 2379999999999873 2 3888888877665532 22222 222221 233333333321 12
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC-------c----HHHhh------ceeeccc-------
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ-------D----EEFVR------RWQLACQ------- 419 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~-------~----~~~~~------~~~l~~~------- 419 (476)
...+.++++++++++|.+.|++. |+....++.++++.+..++ + .++.+ ++.+...
T Consensus 365 ~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~ 444 (481)
T PLN02822 365 DNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDK 444 (481)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCC
Confidence 23578889999999999999986 6554445667777766542 1 12222 2222211
Q ss_pred ---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 420 ---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 420 ---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
...+|++++..+|++||++++++|+++.+...
T Consensus 445 ~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~ 479 (481)
T PLN02822 445 CRLPVGIRLFVSAGHTESDILKASESLKRVAASVL 479 (481)
T ss_pred CCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23699999999999999999999999877654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=192.45 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=196.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+|+.+.+|.+.+.. .+++|+|+++++..++.+... +|+.|++++++|..+...++.+|++++.+|++
T Consensus 68 G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~ 145 (383)
T TIGR03540 68 GMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVN--PGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLK 145 (383)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCC--CCCEEEEeCCCCcchHHHHHhcCCEEEEEecC
Confidence 456899999999998888764333 477899999999988877765 89999999999999999999999999999997
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+ ..+|+++|++.+.++++ +|++++++|+||.+-+ +++|+++|++||+ ++++|++|+.+.+......
T Consensus 146 ~~~g~~~d~~~l~~~~~~~~~---~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~l~~~~~~~~ 217 (383)
T TIGR03540 146 EENGFLPDFDAIPEDIAKKAK---LMFINYPNNPTGAVAPLKFFKELVEFAKEYNI-----IVCHDNAYSEITFDGYKAP 217 (383)
T ss_pred cccCCccCHHHHHhhccccce---EEEEeCCCCCcCccCCHHHHHHHHHHHHHcCE-----EEEEecchhhhccCCCCCc
Confidence 43 45799999998865443 7888889999999977 7899999999999 9999999986554322222
Q ss_pred CCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+..... ....++..++.|.++ .++++|+++.++++++.+.....+.. .+.+ .+.+.++...+ +.+
T Consensus 218 ~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~-------~~~~---~~~q~~~~~~l~~~~~ 287 (383)
T TIGR03540 218 SFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVD-------SGVF---QAIQYAAIAALNGPQD 287 (383)
T ss_pred CcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcc-------cCCC---hHHHHHHHHHHhCCHH
Confidence 111211 123456678889885 77899999998877665532211110 0111 12223333333 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHH----h--hceeecc-------cCCEEEEEEc
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEF----V--RRWQLAC-------QGNIAHVVVM 428 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~----~--~~~~l~~-------~~~~lRv~~~ 428 (476)
.+++..+++.++++.+.+.|++.|+....+.....+.+..++ ..++ . +++.+.. ..+.+|+++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 367 (383)
T TIGR03540 288 VVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT 367 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec
Confidence 456667778889999999999987644433334445555543 2222 2 2333321 1368999986
Q ss_pred CCCCHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELI 444 (476)
Q Consensus 429 ~~~T~edid~~~~~l~ 444 (476)
.+.++++..++.|.
T Consensus 368 --~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 368 --VPDERLEEAVARIK 381 (383)
T ss_pred --CCHHHHHHHHHHHh
Confidence 45666666665553
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=188.92 Aligned_cols=256 Identities=13% Similarity=-0.009 Sum_probs=188.7
Q ss_pred chhhHHHHHHHHHHHHHHcCCCC-CcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 134 GVHSRQFEVGVLDWFARLWELEN-NEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~-~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
+.+.+++.+.+++.++.++|... ...++.+|.|+.+|++.++++..+ +||+|++-++.+.++....++.|...+.|+
T Consensus 68 ~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--~GDeVii~eP~fd~Y~~~~~maG~tpv~v~ 145 (420)
T KOG0257|consen 68 GYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--PGDEVIVFEPFFDCYIPQVVMAGGTPVFVP 145 (420)
T ss_pred cCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--CCCEEEEecCcchhhhhHHhhcCCcceeec
Confidence 44678999999999999887652 234599999999999999999988 999999999999999999999999999988
Q ss_pred CC--------CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 213 CL--------ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 213 ~~--------~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.. +++.+|.+.||.++.++|+ +|++++|.|++|.+.+ |++|++||++||+ |+++|++|...
T Consensus 146 ~~~~~g~~~s~~~~~D~~~le~~~t~kTk---~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~-----lvisDevYe~~ 217 (420)
T KOG0257|consen 146 LKPKEGNVSSSDWTLDPEELESKITEKTK---AIILNTPHNPTGKVFSREELERIAELCKKHGL-----LVISDEVYEWL 217 (420)
T ss_pred cccccccccCccccCChHHHHhhccCCcc---EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE-----EEEEhhHhHHH
Confidence 76 3578999999999999887 8999999999999965 8999999999999 99999999988
Q ss_pred cccccccCCCCC--C-cccccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChh--HHHHH
Q 011842 282 MMPFVKKAPKVS--F-KKPIGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHA--PIFLW 355 (476)
Q Consensus 282 ~~~~~~~~~~~~--~-~~~~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~--~l~~~ 355 (476)
+++..++..... + -++.-.+ .|+.| +.+++|++||++.++.++..+...+++. .+.++.+... +.++.
T Consensus 218 v~d~~~h~r~aslPgm~ertitv-gS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~-----~~~~~Tp~q~A~a~a~~ 291 (420)
T KOG0257|consen 218 VYDGNKHIRIASLPGMYERTITV-GSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNF-----VFTCPTPIQEASAAAFA 291 (420)
T ss_pred hhCCCcceeeecCCchhheEEEe-ccccceeeeeeeeeeeeechHHhhhhHHHHhhcc-----ccccCcHHHHHHHHHHh
Confidence 876554432111 1 1223333 44555 5578999999999555555443333332 1222222111 12222
Q ss_pred HHHHHhCh---hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC
Q 011842 356 YTLNRKGY---KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP 405 (476)
Q Consensus 356 ~~l~~~g~---~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~ 405 (476)
..+..... .-.+.+.+.+.++++.|.+.|.+.|+....++++..+....+
T Consensus 292 ~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 292 LELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPEGAYYLWADFS 344 (420)
T ss_pred hhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceEEEEecc
Confidence 22221111 223447888999999999999999988777777766654443
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=193.03 Aligned_cols=292 Identities=15% Similarity=0.079 Sum_probs=201.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+.. .+++|+|+++|+..++.+... +++.|++..+.|.++..+++..|++++.++.+
T Consensus 62 g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~--~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~ 139 (387)
T PRK07777 62 GIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVE--PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLV 139 (387)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcC--CCCEEEEeCCCchhhHHHHHHCCCEEEEeecC
Confidence 567999999999998888864332 489999999999888876654 88999999999999999999999999999986
Q ss_pred CC---CccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 215 IS---GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 215 ~~---g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
++ +.+|+++|++.+.++++ +|+++++.++||.+- ++++|+++|++|++ ++++|++|+.+.+....+
T Consensus 140 ~~~~~~~~d~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~li~De~y~~~~~~~~~~ 211 (387)
T PRK07777 140 PDGRGFALDLDALRAAVTPRTR---ALIVNSPHNPTGTVLTAAELAAIAELAVEHDL-----LVITDEVYEHLVFDGARH 211 (387)
T ss_pred CccCCCcCCHHHHHHhcCcccE---EEEEcCCCCCCCccCCHHHHHHHHHHHHhcCc-----EEEEeccchhcccCCCCc
Confidence 53 46999999998866543 777888999999974 58899999999999 999999998765432222
Q ss_pred CCCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 289 APKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
.+..... ...+++..|++|.++ .++++|+++.++++++.+.....|.. ...+. .....+..++.. +..-
T Consensus 212 ~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~-----~~~~~--~~q~~~~~~l~~-~~~~ 283 (387)
T PRK07777 212 LPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLT-----YVGGA--PFQPAVAHALDH-EDAW 283 (387)
T ss_pred ccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcc-----cCCCC--HHHHHHHHHHhC-CcHH
Confidence 1111111 225678899999987 68899999998887665543222221 11111 111111112221 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-----CcHHHhh------ceee-cc---------cCCEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-----QDEEFVR------RWQL-AC---------QGNIAH 424 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-----~~~~~~~------~~~l-~~---------~~~~lR 424 (476)
+++..+...++++++.+.|++.++....++....+++..+ ++.++.+ +..+ +. ..+.+|
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~R 363 (387)
T PRK07777 284 VAALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVR 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEE
Confidence 5666778888999999999988755433333444444432 2233322 2222 11 135799
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++.. ++++++..++.|.+..
T Consensus 364 i~~~~--~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 364 FAFCK--RDDTLDEAIRRLRALR 384 (387)
T ss_pred EEecC--CHHHHHHHHHHHHHHh
Confidence 98863 6889888888887643
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=203.02 Aligned_cols=325 Identities=12% Similarity=0.032 Sum_probs=212.1
Q ss_pred cccCCCCcCCc--chHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHH
Q 011842 98 HHLGYPYNLDF--DYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGI 175 (476)
Q Consensus 98 ~~~g~p~~~~~--~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al 175 (476)
...|-|...++ +...+..+....... .. ++...+..++++++.+++.+..+.+.+..++++|+|+++++..++
T Consensus 151 l~~G~p~~~~~~~p~~~~~~~~~~~~~~--~~---Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 151 LNIGNPAPFGFRTPDEVVYDMAQQLTDT--EG---YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred ecCcCCCcCCCCCCHHHHHHHHHHhhcC--CC---CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 35567765555 444455544433221 11 222336789999999998775543333346999999999999988
Q ss_pred HHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC-
Q 011842 176 LVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD- 252 (476)
Q Consensus 176 ~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~- 252 (476)
.+..+ ||+.|+++.++|..+...+++.|++++.+++++ ++.+|+++|++++.++++ +|++++|+|+||.+-+
T Consensus 226 ~~l~~--~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k---~i~i~nP~NPTG~v~~~ 300 (517)
T PRK13355 226 SALLD--DGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTK---AIVIINPNNPTGALYPR 300 (517)
T ss_pred HHhCC--CCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCce---EEEEECCCCCCCcCcCH
Confidence 88765 999999999999999999999999999999874 467999999999876665 7888899999999977
Q ss_pred --HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEE-EEcCCCC-CCCCCCceeEEee--hhh--
Q 011842 253 --LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSV-SVSGHKF-VGCPMPCGVQITR--MEH-- 324 (476)
Q Consensus 253 --l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi-~~s~hK~-l~~p~~~G~l~~~--~~~-- 324 (476)
+++|+++|++|++ +|++|++|..+.+....+.+.........++ ..++.|. .++++++||++++ .++
T Consensus 301 ~~l~~i~~~a~~~~~-----~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~ 375 (517)
T PRK13355 301 EVLQQIVDIAREHQL-----IIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAK 375 (517)
T ss_pred HHHHHHHHHHHHcCc-----EEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHH
Confidence 8899999999999 9999999987665432222211221122233 3567786 5789999999964 322
Q ss_pred --hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHH---HHHHHHHHHHHHHHHhcCCeEeecCCee
Q 011842 325 --INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEV---QKCLRNAHYLKDRLLDAGISAMLNELSS 398 (476)
Q Consensus 325 --~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~---~~~~~~a~~l~~~L~~~g~~~~~~~~~~ 398 (476)
++.+... ... ..+ ...+.++++..++.. ..+++.+ ++..+.++++.+.|++.+...+.+|..+
T Consensus 376 ~~~~~l~~~-~~~-------~~~---~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~g~ 444 (517)
T PRK13355 376 DYIEGLNML-ANM-------RLC---SNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPKAA 444 (517)
T ss_pred HHHHHHHHH-hcC-------cCC---cChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCee
Confidence 2222110 010 001 123455555555532 1223332 3455677889999988733344455555
Q ss_pred EEEE-ecCC-------cHHHhh------ceee-cc------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 399 TVVF-ERPQ-------DEEFVR------RWQL-AC------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 399 iv~f-~~~~-------~~~~~~------~~~l-~~------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++| +.+. +.++.. +..+ +. ..+++|+++. .+.++|+..++.|.+..+..
T Consensus 445 fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 445 FYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL--PRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred eEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 5555 4431 223221 2222 11 2468999984 67899999888888876543
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=193.29 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=195.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++|+.+.+|.+.++. .+++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+|++
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 151 (394)
T PRK05942 74 GTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVN--PGDVVLVPSPAYPAHFRGPLIAGAQIYPIILK 151 (394)
T ss_pred CCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCEEEEeecC
Confidence 456999999999998888654333 478899999999988877765 99999999999999988889999999999987
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+ +.+|+++|++.+.++++ ++++++++|+||.+-+ +++|+++|++||+ ++++|++|+.+.+......
T Consensus 152 ~~~~~~~d~~~l~~~~~~~~k---~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~-----~iI~De~y~~~~~~~~~~~ 223 (394)
T PRK05942 152 PENDWLIDLSSIPEEVAQQAK---ILYFNYPSNPTTATAPREFFEEIVAFARKYEI-----MLVHDLCYAELAFDGYQPT 223 (394)
T ss_pred CccCCccCHHHHHHhccccce---EEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCe-----EEEEeccchhhccCCCCCC
Confidence 43 46999999998875544 7888889999999977 8899999999999 9999999986554322111
Q ss_pred CCCCCc--ccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+..++. ....++..++.|.+ ..++++|++++++++++.+.....+.. .+.+ .+.+.++...+ ..+
T Consensus 224 ~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~-------~~~~---~~~q~~~~~~l~~~~~ 293 (394)
T PRK05942 224 SLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLD-------YGIF---SALQKAAETALQLPDS 293 (394)
T ss_pred ChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcc-------cCCC---HHHHHHHHHHHhCcHH
Confidence 112221 12335567788966 578999999998887766543222210 1111 12222222332 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-EEEEecCC---cHHHh------hceee-c------ccCCEEEEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-TVVFERPQ---DEEFV------RRWQL-A------CQGNIAHVVV 427 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-iv~f~~~~---~~~~~------~~~~l-~------~~~~~lRv~~ 427 (476)
.+++..+++.++++++.+.|++.|+. +.++.++ .+.+..+. +.++. .+..+ + ...+++|+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~ 372 (394)
T PRK05942 294 YLQQVQERYRTRRDFLIQGLGELGWN-IPPTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISL 372 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCe-ecCCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEe
Confidence 45667777888899999999888764 3444554 44455542 22222 23333 2 1246899998
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~ 446 (476)
. . +.+++.++|+++
T Consensus 373 ~--~---~~~~l~~~l~~l 386 (394)
T PRK05942 373 I--A---DCDRLGEALDRL 386 (394)
T ss_pred c--C---CHHHHHHHHHHH
Confidence 5 2 345555555544
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=191.63 Aligned_cols=285 Identities=14% Similarity=0.078 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCC-chhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNC-GTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~g-gt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~ 212 (476)
...++.+++++.++++++.+. ++..++++| ||+|+-.++..... +++.+++-....++ +.+.++.+|+ +..+.
T Consensus 34 ~f~~~~~~~~~~l~~l~~~~~-~~~v~~~~gsgT~a~ea~~~nl~~--~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 34 EFEAVANEAESDLRELLNIPD-NYEVLFLQGGATGQFAAVPLNLLA--EGKVADYIVTGAWSKKAAKEAKKYGV-VNVVA 109 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHHHHHHHHhcCC--CCCeEEEEECCHHHHHHHHHHHHhCC-cEEEe
Confidence 345888899999999999853 355777766 89998888777654 55544443334433 4678888899 77777
Q ss_pred CCCCC----ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 213 CLISG----EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 213 ~~~~g----~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.++.+ .+|+++++. .+ .+.+|.+++..|.||...| ++++.+++ +++||++++.+..|
T Consensus 110 ~~~~~~~~~~~~~~~~~~--~~---~~~~v~~th~ETstGv~~~-----~l~~~~~~-----l~iVDavss~g~~~---- 170 (349)
T TIGR01364 110 SGKEGNYTKIPDPSTWEI--SE---DAAYVHYCANETIHGVEFR-----ELPDVKNA-----PLVADMSSNILSRP---- 170 (349)
T ss_pred ccccCCCCCCCCHHhcCC--CC---CCCEEEEcCCCCcccEecc-----eecccCCC-----eEEEEccccccCcc----
Confidence 65322 356665542 22 3458999999999999876 66777899 99999999887776
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCC----CCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
+++.+ .|++++++||+++ |.|.|+++++++.++.+... ..|... ......+|.+....+++..+++.+..
T Consensus 171 ---id~~~-~d~~~~ssqK~lg-P~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~ 245 (349)
T TIGR01364 171 ---IDVSK-FGLIYAGAQKNIG-PAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKE 245 (349)
T ss_pred ---CCHHH-ccEEEEecccccC-CCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 55543 6799999999997 99999999999987655322 222210 11223467776667788889999888
Q ss_pred h-cHHHHHHHHHHHHHHHHHHHHhcC-CeEeec-C--Ce-eEEEEecCCc---HHHh-----hceeeccc---CCEEEEE
Q 011842 364 K-GFQKEVQKCLRNAHYLKDRLLDAG-ISAMLN-E--LS-STVVFERPQD---EEFV-----RRWQLACQ---GNIAHVV 426 (476)
Q Consensus 364 ~-g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~~-~--~~-~iv~f~~~~~---~~~~-----~~~~l~~~---~~~lRv~ 426 (476)
+ |++++.++..++++++++.|++.+ +..... + .+ .+++|..++. .++. +++.+... .+.+|++
T Consensus 246 ~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS 325 (349)
T TIGR01364 246 QGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSVGGMRAS 325 (349)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccccCeeEEE
Confidence 8 799999999999999999999995 433322 1 23 5677887642 2221 23322211 3689999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~ 448 (476)
++.++|.||||+|+++|+++.+
T Consensus 326 ~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 326 IYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred CcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=191.43 Aligned_cols=286 Identities=13% Similarity=-0.007 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++.+|+.+..|.+.+..++++|+|+++++...+.+..+ ||+.|++..++|..+...++..|++++.++.+++
T Consensus 67 ~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~--~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~ 144 (368)
T PRK03317 67 AVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGG--PGRTALGFVPSYSMHPIIARGTHTEWVEGPRAAD 144 (368)
T ss_pred hHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCC
Confidence 45899999999988887765556799999999999998888776 8999999999999999999999999988887767
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+.+|+++|++++.+.. +.+++++++.|+||.+.+.+++.++++.+++ ++++|++|+.+..... .+......
T Consensus 145 ~~~d~~~l~~~~~~~~--~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~-----~lI~DE~y~~~~~~~~--~~~~~~~~ 215 (368)
T PRK03317 145 FTLDVDAAVAAIAEHR--PDVVFLTSPNNPTGTALPLDDVEAILDAAPG-----IVVVDEAYAEFRRSGT--PSALTLLP 215 (368)
T ss_pred CCCCHHHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCc-----eEEEeCCchhhcccCC--cCHHHHHH
Confidence 8899999999997532 2266778999999999999999999999999 9999999986543211 11111111
Q ss_pred -ccc-EEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHH
Q 011842 297 -PIG-SVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQK 372 (476)
Q Consensus 297 -~~D-si~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~ 372 (476)
.-+ ++..++.|.++ +++++|+++.++++++.+..... ++..+ .+.+.++...+. .+.+.+.+++
T Consensus 216 ~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~-------~~~~s-----~~~~~a~~~~l~~~~~~~~~~~~ 283 (368)
T PRK03317 216 EYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL-------PYHLS-----AVTQAAARAALRHADELLASVAA 283 (368)
T ss_pred hCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC-------CCCCC-----HHHHHHHHHHhhCHHHHHHHHHH
Confidence 113 45568999886 68999999998887766642110 11111 233434333332 2334555667
Q ss_pred HHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-cCCcHHHh-----hceeecc--cCCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 373 CLRNAHYLKDRLLDAGISAMLNELSSTVVFE-RPQDEEFV-----RRWQLAC--QGNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-~~~~~~~~-----~~~~l~~--~~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
..++++++.+.|++.|+. +.++..+.+.|. .++..++. +++.+.. ..+++|++++ +.+++++++++|+
T Consensus 284 ~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~---~~~~~~~~~~~l~ 359 (368)
T PRK03317 284 LRAERDRVVAWLRELGLR-VAPSDANFVLFGRFADRHAVWQGLLDRGVLIRDVGIPGWLRVTIG---TPEENDAFLAALA 359 (368)
T ss_pred HHHHHHHHHHHHHHCCCE-eCCCCCcEEEEeccCCHHHHHHHHHHCCEEEEeCCCCCeEEEecC---CHHHHHHHHHHHH
Confidence 778888899999988864 344555555553 33333332 2333332 2368999874 7899999999999
Q ss_pred HHHHH
Q 011842 445 ENRST 449 (476)
Q Consensus 445 ~~~~~ 449 (476)
++.+.
T Consensus 360 ~~~~~ 364 (368)
T PRK03317 360 EVLAT 364 (368)
T ss_pred HHHHH
Confidence 87653
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=194.84 Aligned_cols=287 Identities=15% Similarity=0.109 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH-----HHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA-----ARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~-----~~~~G~~v~~ 210 (476)
...++|+.+++++++++|.+.. .++++|||+|+..++.+... ||+.|++++++|.++... ++..|++++.
T Consensus 62 ~~~~l~~~~~~~~~~~~g~~~~---~v~~~sgt~a~~~~l~~l~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~ 136 (402)
T cd00378 62 YVDEIEDLAIERAKKLFGAEYA---NVQPHSGSQANLAVYFALLE--PGDTIMGLDLSHGGHLTHGSFTKVSASGKLFES 136 (402)
T ss_pred HHHHHHHHHHHHHHHHhCCCce---eeecCCcHHHHHHHHHHhcC--CCCEEEEecCccCccccccccccccccceeEEE
Confidence 3457777788999999999742 34545789999988888765 999999999998765332 5667887777
Q ss_pred EeCCC---CCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 211 VDCLI---SGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 211 v~~~~---~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
++.+. ++.+|+++|++++.+ +++ +++++++. +|...|+++|+++|++||+ ++++|++|..+.....
T Consensus 137 ~~~~~~~~~~~id~~~l~~~i~~~~~~---~v~~~~~~--~~~~~~~~~I~~l~~~~~~-----~li~D~a~~~g~~~~g 206 (402)
T cd00378 137 VPYGVDPETGLIDYDALEKMALEFKPK---LIVAGASA--YPRPIDFKRFREIADEVGA-----YLLVDMAHVAGLVAGG 206 (402)
T ss_pred ecCCcCcccCCcCHHHHHHHHHhCCCC---EEEecCcc--cCCCcCHHHHHHHHHhcCC-----EEEEEccchhhhhhcc
Confidence 76642 589999999999964 333 66665543 4677899999999999999 9999999754332111
Q ss_pred ccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChh
Q 011842 287 KKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 287 ~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
... .... .+|+++.++|||+.+ ++.|++++++ ++.+.+.... .+. .++........+..++......
T Consensus 207 ~~~--~~~~-~~dv~~~s~sK~l~G-~~gg~i~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~a~~~al~~~~~~ 275 (402)
T cd00378 207 VFP--NPLP-GADVVTTTTHKTLRG-PRGGLILTRKGELAKKINSAVFPGL-------QGGPHLHVIAAKAVALKEALEP 275 (402)
T ss_pred cCC--Cccc-CCcEEEeccccCCCC-CCceEEEeccHHHHHHHHHHhCccc-------cCCchHHHHHHHHHHHHHHhhH
Confidence 111 1122 478999999999954 5678888776 6655553211 111 1111111122222333333223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEee-cCCeeEEEEecCC---c-HHH---hh--ceeec-----------ccCCEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAML-NELSSTVVFERPQ---D-EEF---VR--RWQLA-----------CQGNIA 423 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~iv~f~~~~---~-~~~---~~--~~~l~-----------~~~~~l 423 (476)
.+++++++..++++++.+.|++.|+.... +..++++.+..++ + ..+ .+ +..+. .....+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~l 355 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGI 355 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCee
Confidence 56778888999999999999999876543 3356666666542 1 111 11 22221 123578
Q ss_pred EEEEcC----CCCHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMP----NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 424 Rv~~~~----~~T~edid~~~~~l~~~~~ 448 (476)
|++++. ..+.+||+.+++.|+++.+
T Consensus 356 Ri~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 356 RIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred EecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 998765 4589999999999988664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-20 Score=191.30 Aligned_cols=295 Identities=13% Similarity=0.096 Sum_probs=203.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++|+.+..|++.+.. .+++|+|+++|+..++.+..+ |++.|++++++|..+...++..|++++.||++
T Consensus 72 G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 149 (403)
T PRK08636 72 GIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITN--PGDVAIVPDPAYPIHSQAFILAGGNVHKMPLE 149 (403)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecc
Confidence 567999999999999888764444 599999999999999888776 99999999999999999999999999999885
Q ss_pred --CCCccCHHHH----HHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 215 --ISGEIDCADF----KAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 215 --~~g~~D~~~L----e~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+++.+|++.| ++++.+...+..++++++|.|+||.+-+ +++|+++|++|++ ||++|++|+.+.+..
T Consensus 150 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~-----~II~De~Y~~l~~~~ 224 (403)
T PRK08636 150 YNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERF-----YIISDIAYADITFDG 224 (403)
T ss_pred ccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc-----EEEEeccchhhccCC
Confidence 3468998855 5555543334568888889999999855 6888899999999 999999998665432
Q ss_pred cccCCCCCCcc--cccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-
Q 011842 286 VKKAPKVSFKK--PIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK- 361 (476)
Q Consensus 286 ~~~~~~~~~~~--~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~- 361 (476)
....+...... ...+.+.|+.|.+ .+++++|+++.++++++.+.....+.. ...+ ...+.++...+
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~-----~~~~-----~~~q~~~~~~~~ 294 (403)
T PRK08636 225 YKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLD-----YGMF-----TPIQVAATIALD 294 (403)
T ss_pred CCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHHhc-----ccCC-----hHHHHHHHHHHh
Confidence 11111122211 1223467899998 589999999998887765543222210 0111 11122222222
Q ss_pred -ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC------cHHHhh------ceeecc-------cCC
Q 011842 362 -GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ------DEEFVR------RWQLAC-------QGN 421 (476)
Q Consensus 362 -g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~------~~~~~~------~~~l~~-------~~~ 421 (476)
....+++..+...++++++.+.|++.++....+.....+.++.++ +.++.+ ++.+.. ..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~ 374 (403)
T PRK08636 295 GDQSCVEEIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDE 374 (403)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCC
Confidence 123355666777788888999999887643334455666666552 123321 233311 136
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+|+++. .+.++++..++.|.+..+.
T Consensus 375 ~iRi~~~--~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 375 YVRIALI--ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred eEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 8999986 5788888888888777654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=191.93 Aligned_cols=287 Identities=13% Similarity=0.061 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+|+.+.+|.+.++. ..++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+|.+
T Consensus 70 G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~--~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~ 147 (385)
T PRK09276 70 GMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVN--PGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLK 147 (385)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC--CCCEEEEcCCCCcChHHHHHHcCCEEEEEecC
Confidence 456899999999998888754333 478889999999988877765 89999999999999999999999999999986
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+ +.+|++++++.+.++++ +|++++++|+||.+-+ +++|+++|++||+ |+++|++|+.+.+......
T Consensus 148 ~~~g~~~d~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~~~~~ 219 (385)
T PRK09276 148 EENGFLPDLDAIPEDVAKKAK---LMFINYPNNPTGAVADLEFFEEVVDFAKKYDI-----IVCHDAAYSEIAYDGYKPP 219 (385)
T ss_pred CCCCCcCCHHHHHHhccccce---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCc-----EEEEecchhheecCCCCCC
Confidence 43 45899999888865544 7888889999999976 6889999999999 9999999986654321221
Q ss_pred CCCCCc--ccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~ 364 (476)
+..... ....++..|+.|.+ ..++++|+++.++++++.+.....++.. +. ..+.+.++...+. ..
T Consensus 220 ~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~-------~~---~~~~q~~~~~~l~~~~~ 289 (385)
T PRK09276 220 SFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDS-------GV---FQAIQEAGIAALNGPQE 289 (385)
T ss_pred ChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccC-------CC---CHHHHHHHHHHHcCcHH
Confidence 111221 12345667888988 4778999999988776665432222111 01 1223333333332 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHH----hh--ceeecc-------cCCEEEEEEc
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEF----VR--RWQLAC-------QGNIAHVVVM 428 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~----~~--~~~l~~-------~~~~lRv~~~ 428 (476)
.+++..++..++++++.+.|++.++....+.....+.+..++ ..++ .+ +..+.. ..+++|+++.
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 369 (385)
T PRK09276 290 VVEELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC
Confidence 356667777888999999999987543333333445555543 2222 21 333321 1368999986
Q ss_pred CCCCHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELI 444 (476)
Q Consensus 429 ~~~T~edid~~~~~l~ 444 (476)
.+++++...++.|.
T Consensus 370 --~~~~~l~~~l~~l~ 383 (385)
T PRK09276 370 --VPDERIEEAVERIK 383 (385)
T ss_pred --CCHHHHHHHHHHHh
Confidence 46676666666554
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=189.00 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH--HHHHcC-CeEEEEeCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--AARMYR-MECVKVDCL 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~--~~~~~G-~~v~~v~~~ 214 (476)
.+.-+++.+++++++|... ++|+++||+||.+++.+..+ |+..||+.+.+|..... +...++ +..+.+...
T Consensus 34 D~~~~~~e~~~ae~~g~~a----~~Fv~sGT~aN~lal~~~~~--~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g 107 (342)
T COG2008 34 DPTTNALEQRIAELFGKEA----ALFVPSGTQANQLALAAHCQ--PGESVICHETAHIYTDECGAPEFFGGGQKLPIVPG 107 (342)
T ss_pred CHHHHHHHHHHHHHhCCce----EEEecCccHHHHHHHHHhcC--CCCeEEEeccccceecccCcHHHHcCCceeccCCC
Confidence 3667778888999999832 99999999999999999886 99999999999987764 334443 444444444
Q ss_pred CCCccCHHHHHHHHHcC----CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 215 ISGEIDCADFKAKLLQN----KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~----~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++|.|++++++..|..+ ..+|.+++.|..+ ..|++-| |++|.++||+||+ .||+|||--+-......
T Consensus 108 ~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l-----~LHmDGAR~~nA~valg 181 (342)
T COG2008 108 ADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGL-----PLHMDGARLANALVALG 181 (342)
T ss_pred CCCCcCHHHHHHhhcCCCcccCCCceEEEeeccC-CCceecCHHHHHHHHHHHHHhCC-----ceeechHHHHHHHHHcC
Confidence 78999999999999753 3456677776555 7788855 6778899999999 99999995332222211
Q ss_pred cCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 288 KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 288 ~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
.+..+....+|++++++.|.++.|. -++++.+.++++.+... ..| ++ ..+..++. .++| +-++...-.
T Consensus 182 -~~~~~~~~~~D~v~~~~tK~g~~~~-gAiv~gn~~~~~~a~~~rK~~-Gg-----l~~k~r~l-aA~~--~~~l~~~~~ 250 (342)
T COG2008 182 -VALKTIKSYVDSVSFCLTKGGGAPV-GAIVFGNRDFAKRARRWRKRA-GG-----LMRKARFL-AAQG--LYALEDDVW 250 (342)
T ss_pred -CCHHHHHhhCCEEEEecccCCccee-eeEEEcCHHHHHHHHHHHHHh-cc-----cHhhhhHH-HHHH--HHHHhccHH
Confidence 2223444569999999999999653 34555566565544221 111 00 01111121 1222 222222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCCc--HHH-hhceee------cccCCEEEEEEcCCCCHHHH
Q 011842 367 QKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQD--EEF-VRRWQL------ACQGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~--~~~-~~~~~l------~~~~~~lRv~~~~~~T~edi 436 (476)
...-++..++|++|.+.|.+. |..+..++.+|+|+++.+.. +.+ ..+|.. ...+..+|++++..+|++||
T Consensus 251 ~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv 330 (342)
T COG2008 251 RLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDV 330 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHH
Confidence 555566667799999999964 77766677899999988753 111 112211 11224799999999999999
Q ss_pred HHHHHHHHHHH
Q 011842 437 DDFLNELIENR 447 (476)
Q Consensus 437 d~~~~~l~~~~ 447 (476)
|+|+..+++..
T Consensus 331 ~~~~~~~~~~~ 341 (342)
T COG2008 331 DELVAAIKALL 341 (342)
T ss_pred HHHHHHHHHhh
Confidence 99999998753
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=192.54 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=204.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHH-HHHHHhhCCCc---EEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHG-ILVGREVFPDG---ILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~a-l~aa~~~~p~~---~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
...++.+++++.+++++|.+. +++.++++|++++.+.+ ++.... +++ +|+....+|. +.+.++.+|.. ..+
T Consensus 45 ~f~~~~~~~~~~l~~l~~~~~-~~~v~~~~gsgt~~~Ea~~~nl~~--~g~~~l~i~~G~fg~r-~~~~a~~~g~~-~~~ 119 (360)
T PRK05355 45 EFEAVAEEAEADLRELLNIPD-NYKVLFLQGGASLQFAMVPMNLLG--GGKKADYVDTGSWSKK-AIKEAKKYGEV-NVA 119 (360)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CcEEEEEcCCchHHHHHHHHhcCC--CCCeEEEEECCHHHHH-HHHHHHHhCCc-eEE
Confidence 345888999999999999843 35577776666665544 444433 443 4444444454 36777888865 666
Q ss_pred eCCC-CCccCHHHHHH-HHHcCCCCcEEEEEeeCCCcccccc-CHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 212 DCLI-SGEIDCADFKA-KLLQNKDKPAIINVNIGTTVKGAVD-DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 212 ~~~~-~g~~D~~~Le~-~l~~~~~~p~~vv~t~gtt~tG~id-~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
..++ .|..+..++++ .|.++. .+|.+++..|.||... ||++| ||+ +++||++++.+..+
T Consensus 120 ~~~~~~g~~~~~~~~~~~l~~~~---~~V~~th~eTstGv~~~~i~~i------~g~-----l~vVDavss~g~~~---- 181 (360)
T PRK05355 120 ASSEDDGFTYIPPLDEWQLSDDA---AYVHYTSNETIDGTEFHELPDT------GDV-----PLVADMSSDILSRP---- 181 (360)
T ss_pred ecccccCCCCCCChhhccCCCCC---CEEEEccCCCcceEecCccccc------CCC-----cEEEEcCccccCcc----
Confidence 6553 56666666666 665544 4899999999999997 77776 899 99999999887776
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCC----CCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
+++.+ .|++++++||+++ |.|.|+++++++.++.+.. ...|+.. ......+|.+....+++..+++.+..
T Consensus 182 ---idv~~-~d~~~~ssqK~lg-P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~ 256 (360)
T PRK05355 182 ---IDVSK-FGLIYAGAQKNIG-PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKE 256 (360)
T ss_pred ---CCHHH-ccEEEEecccccc-CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHH
Confidence 55543 5899999999997 9999999999998766543 2223221 11123477777777888899999888
Q ss_pred h-cHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecC--Ce-eEEEEecCCc---HHHh-----hceeecc---cCCEEEEEE
Q 011842 364 K-GFQKEVQKCLRNAHYLKDRLLDAGISAM-LNE--LS-STVVFERPQD---EEFV-----RRWQLAC---QGNIAHVVV 427 (476)
Q Consensus 364 ~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~--~~-~iv~f~~~~~---~~~~-----~~~~l~~---~~~~lRv~~ 427 (476)
+ |++++.++..++++++++.|++.|+... .++ .+ .+++|..++. .++. +++.... ..+.+|+|+
T Consensus 257 ~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~ 336 (360)
T PRK05355 257 QGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHRSVGGMRASI 336 (360)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCCccCcEEEEC
Confidence 8 8999999999999999999999986433 221 24 5688887653 2221 2222211 136799999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
+.++|.+|||+|+++|+++..
T Consensus 337 ~~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 337 YNAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998654
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-20 Score=190.16 Aligned_cols=296 Identities=13% Similarity=0.013 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++++.+.+|.+.+.. .+++|+|+++++..++.+..+ +|+.|++++++|..+...++..|++++.+|++
T Consensus 69 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~ 146 (405)
T PRK09148 69 GIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITA--PGDVILCPNPSYPIHAFGFIMAGGVIRSVPAE 146 (405)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcC--CCCEEEEcCCCCcccHHHHHhcCCEEEEEeCC
Confidence 567999999999998878753333 599999999999988888766 89999999999999988889999999999987
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCH---HHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL---DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l---~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.++. +++++++.+.....++.++++++|+|+||.+-+. ++|+++|++||+ +|++|++|+.+.+......+.
T Consensus 147 ~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~-----~ii~De~Y~~~~~~~~~~~s~ 220 (405)
T PRK09148 147 PDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDI-----IILSDLAYSEIYFDGNPPPSV 220 (405)
T ss_pred CCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe-----EEEEeccchhhhcCCCCCCCh
Confidence 5443 3556677665443345688899999999999775 688899999999 999999998765432111111
Q ss_pred CCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcH
Q 011842 292 VSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGF 366 (476)
Q Consensus 292 ~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~ 366 (476)
.... ....++..|+.|.++ .++++||++.+.++++.+.....++.. +. ..+.+.++...+. ..-+
T Consensus 221 ~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~-------~~---~~~~q~~~~~~L~~~~~~~ 290 (405)
T PRK09148 221 LQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDY-------GA---FTPIQVAATAALNGPQDCI 290 (405)
T ss_pred hhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhcc-------CC---ChHHHHHHHHHHhCcHHHH
Confidence 1111 112345788999886 889999999988777666433333211 11 1233344444442 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC------cHHHh------hceeecc-------cCCEEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ------DEEFV------RRWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~------~~~~~------~~~~l~~-------~~~~lRv~~ 427 (476)
++..++..++++++.+.|++.++....+...+.+.++.+. ..++. ++..+.. ..+++|+++
T Consensus 291 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~ 370 (405)
T PRK09148 291 AEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIAL 370 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEe
Confidence 6667777888999999999887643333344555555543 12232 1222211 136899988
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
. .+.+.++..++.|.+..+.+-
T Consensus 371 ~--~~~~~l~~al~~l~~~l~~~~ 392 (405)
T PRK09148 371 V--ENEQRIRQAARNIKRFLSSAD 392 (405)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHH
Confidence 5 467888888888877766543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=190.41 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=195.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++.+++.+++++++|.+. .+++++|+++++.++.+... |++.|+++.+.|.++..++++.|+++..++
T Consensus 75 g~~~l~~~l~~~l~~~~g~~~----~i~~~sG~~a~~~a~~~~~~--~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~--- 145 (385)
T TIGR01825 75 GTLRLHEELEEKLAKFKKTEA----ALVFQSGFNTNQGVLSALLR--KGDIVLSDELNHASIIDGLRLTKATKKIYK--- 145 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCCc----EEEECcHHHHHHHHHHHhCC--CCCEEEEEccccHHHHHHHHhcCCceEEeC---
Confidence 345888999999999998642 34445558899988877765 899999999999999988888898877664
Q ss_pred CCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-ccc-CCCC
Q 011842 216 SGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKK-APKV 292 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~-~~~~ 292 (476)
.+|++++++.+.+.. .+..+|+++...+++|.+.|+++|.++|++||+ |+++|++|+.+.++. ... ...+
T Consensus 146 --~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~ 218 (385)
T TIGR01825 146 --HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGA-----VTYVDDAHGSGVMGEAGRGTVHHF 218 (385)
T ss_pred --CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCC-----EEEEECcccccCcCCCCCccHhhc
Confidence 468999999887542 234577777778999999999999999999999 999999997654431 110 0112
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
......|++..+++|+++. ..|+++.+++.++.+... ..|.. .+..+.....++.++++.+.. ..+..+
T Consensus 219 ~~~~~~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~al~~~~~--~~~~~~ 288 (385)
T TIGR01825 219 GLEDKVDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLF------STAQPPAVVAALAAAVDELQR--SPELME 288 (385)
T ss_pred CCCcCCcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccc------cCCCCHHHHHHHHHHHHHHhc--CHHHHH
Confidence 2223478889999999974 348888887776655322 12321 111111112233334443311 235677
Q ss_pred HHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeecc--------cCCEEEEEEcCCCCHHH
Q 011842 372 KCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~ed 435 (476)
+..++++++.+.|++.|+... .+..+++.+..+. ..++. +++.+.. ....+|++++..+|+++
T Consensus 289 ~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~ 367 (385)
T TIGR01825 289 RLWDNTRFFKAGLGKLGYDTG-GSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDD 367 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHH
Confidence 778899999999998876543 3434455554432 12222 2333321 22678999998999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRST 449 (476)
Q Consensus 436 id~~~~~l~~~~~~ 449 (476)
|++++++|+++.+.
T Consensus 368 i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 368 LDQALDAYEKVGKE 381 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=191.54 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+|+.+..|.+.+.. ++++|+|+++++..++.+... ||+.|++.+++|..+...++..|++++.+|++
T Consensus 69 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 146 (388)
T PRK07366 69 GTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLN--PGDFALLLDPGYPSHAGGVYLAGGQIYPMPLR 146 (388)
T ss_pred CCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEECC
Confidence 456899999999988888654444 588999999999988887766 99999999999999999999999999999997
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccc-c
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK-K 288 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~-~ 288 (476)
++ ..+|++++++.+.++++ ++++++++|+||.+-+ +++|+++|++||+ ||++|++|.-+.+.... .
T Consensus 147 ~~~~~~~d~~~l~~~~~~~~k---~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~~~~~~~~~~ 218 (388)
T PRK07366 147 AENDFLPVFADIPTEVLAQAR---LMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDL-----VLVHDFPYVDLVFDGEVEP 218 (388)
T ss_pred CccCCCCCHHHHHHhhcccce---EEEEeCCCCCCCccCCHHHHHHHHHHHHHcCe-----EEEEecchhhcccCCCCCC
Confidence 54 45788898887755443 7778889999999955 6778889999999 99999999876543211 1
Q ss_pred CCCCCCcc-c-ccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 289 APKVSFKK-P-IGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 289 ~~~~~~~~-~-~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
.+...... . .-+++.|+.|.+ ..++++|+++.++++++.+.....+... +. ...+ +.+++..+ ..
T Consensus 219 ~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~~~~~~-------~~--~~~~-~~~a~~~l~~~~ 288 (388)
T PRK07366 219 PSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVKAVVDF-------NQ--YRGI-LNGAIAALTGPQ 288 (388)
T ss_pred CChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHHhhccc-------CC--CHHH-HHHHHHHHhCcH
Confidence 11122211 1 234567899988 5889999999988877665432222110 01 0111 11222222 13
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----cHHHh----h--ceeecc-------cCCEEEE
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----DEEFV----R--RWQLAC-------QGNIAHV 425 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----~~~~~----~--~~~l~~-------~~~~lRv 425 (476)
+.+++..+...++++++.+.|++.|+....+..++.+.+..++ +.++. + +..+.. ..+++|+
T Consensus 289 ~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi 368 (388)
T PRK07366 289 ATVQQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRF 368 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEE
Confidence 4466777888889999999999887643344556666666553 22222 2 232311 1368999
Q ss_pred EEcCCCCHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~ 446 (476)
++. .+.++++..++.|.+.
T Consensus 369 ~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 369 ALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred Eec--CCHHHHHHHHHHHHHh
Confidence 986 3688888888887653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=187.83 Aligned_cols=272 Identities=12% Similarity=0.022 Sum_probs=193.7
Q ss_pred HHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHH
Q 011842 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADF 224 (476)
Q Consensus 145 ~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~L 224 (476)
++.++++++++++ .+++|+|+++++..++.+..+ ||+.|+++.++|..+...++..|++++.++.++++.+|++++
T Consensus 65 r~~ia~~~~~~~~--~i~it~G~~~~l~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l 140 (351)
T PRK14807 65 REELARYCSVVPT--NIFVGNGSDEIIHLIMLAFIN--KGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSF 140 (351)
T ss_pred HHHHHHHhCCCcc--cEEEecCHHHHHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHH
Confidence 3445555677653 489999999998888777655 899999999999988888999999999999987788999999
Q ss_pred HHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEE
Q 011842 225 KAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSV 303 (476)
Q Consensus 225 e~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~ 303 (476)
++++.+ +++ +|++++++|+||.+-+.+++.+++++++. ++++|++|+.+. . ....+.++..+ -.++..
T Consensus 141 ~~~~~~~~~k---~v~l~~p~NPtG~~~~~~~l~~l~~~~~~-----~~ivDe~y~~~~-~-~~~~~~~~~~~-~vi~~~ 209 (351)
T PRK14807 141 IKVIEKYQPK---LVFLCNPNNPTGSVIEREDIIKIIEKSRG-----IVVVDEAYFEFY-G-NTIVDVINEFE-NLIVLR 209 (351)
T ss_pred HHHhhccCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCC-----EEEEeCcchhhc-c-cchHHHhhhCC-CEEEEe
Confidence 999975 444 77778999999999999999999999888 999999997542 1 11111111111 236668
Q ss_pred cCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHH
Q 011842 304 SGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKD 382 (476)
Q Consensus 304 s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~ 382 (476)
|++|.++ .++++|+++.+.++++.+....... . ...+.+.++...+....+++.+++..++++++.+
T Consensus 210 S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~~-------~-----~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~ 277 (351)
T PRK14807 210 TLSKAFGLAGLRVGYAVANENILKYLNLVKSPY-------N-----INSLSQVIALKVLRTGVLKERVNYILNERERLIK 277 (351)
T ss_pred cchHhcccchhceeeeecCHHHHHHHHHccCCC-------C-----cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899886 8899999999887776653221110 0 1234455555555434467777778888888999
Q ss_pred HHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeec-c-----cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 383 RLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLA-C-----QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 383 ~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~-~-----~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.|++.+...+.++.++.+.+..++...+. ++..+. . ..+.+|+++. +.++.++|+++|+++
T Consensus 278 ~l~~~~g~~~~~~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~ 349 (351)
T PRK14807 278 ELSKIPGIKVYPSKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKEL 349 (351)
T ss_pred HHHhCCCcEECcCCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHh
Confidence 99875323445556666666665543332 223331 1 1367999875 688999999999765
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=190.90 Aligned_cols=299 Identities=14% Similarity=-0.005 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
+..++++++.+|+.+..|++.++.++++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.++++
T Consensus 75 G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~ 152 (409)
T PLN00143 75 GILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLAR--PEANILLPRPGFPDVETYAIFHHLEIRHFDLLP 152 (409)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcC--CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccC
Confidence 456899999999988877665556799999999999999888776 99999999999999999999999999999985
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.++.+|+++|++++.++++ ++++++|+|+||.+-+ +++|+++|++|++ +|++|++|..+.+......+
T Consensus 153 ~~~~~~d~~~l~~~~~~~~~---~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~l~~~~~~~~~ 224 (409)
T PLN00143 153 EKGWEVDLDAVEAIADENTI---AMVIINPGNPCGSVYSYEHLNKIAETARKLGI-----LVIADEVYGHIVFGSKPFVP 224 (409)
T ss_pred CCCCcCCHHHHHHhcccCCE---EEEEECCCCCCCCccCHHHHHHHHHHHHHcCC-----eEEEEccccccccCCCCCcc
Confidence 3457999999998865543 6777789999999976 7888899999999 99999999876553211111
Q ss_pred CCCCccc-ccEEEEcCCCC-CCCCCCceeEEee-h-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---h
Q 011842 291 KVSFKKP-IGSVSVSGHKF-VGCPMPCGVQITR-M-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---Y 363 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~-l~~p~~~G~l~~~-~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~ 363 (476)
...+... --++..|+.|. +..++++||+++. + .+++.+.....+....... .++ ..+.+.++...+. .
T Consensus 225 ~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~----~~~~q~a~~~~l~~~~~ 299 (409)
T PLN00143 225 MGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPA-PFP----PTFIQAAIPEILEKTTE 299 (409)
T ss_pred hhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhcc-CCC----CchHHHHHHHHHhcChH
Confidence 1111111 12456677887 7889999999984 3 2221110000000000000 011 1233444444332 2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecC-CeeEEEEecCC--------cHHHh----h--ceee-cc----cCCE
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAM-LNE-LSSTVVFERPQ--------DEEFV----R--RWQL-AC----QGNI 422 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~-~~~iv~f~~~~--------~~~~~----~--~~~l-~~----~~~~ 422 (476)
.-+++.+++..+..+++.+.|++.+.... ..| .++.+.++.+. +.++. . +..+ +. ..++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~ 379 (409)
T PLN00143 300 DFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNW 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 34677788888888889999988764332 233 45666666541 22332 1 2222 21 2468
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+|+++. ++.++++.-++.|.+..+...
T Consensus 380 iRi~~~--~~~~~l~~al~rl~~~l~~~~ 406 (409)
T PLN00143 380 LRITFA--VEQSSLEDGLGRLKSFCGRHA 406 (409)
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHHHHhc
Confidence 999987 468999999998888776543
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-20 Score=188.84 Aligned_cols=285 Identities=12% Similarity=0.048 Sum_probs=199.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+|+.+..|.+.++.++++|+|+++|+..++.+..+ +|+.|++++++|.++...++..|++++.+|++.
T Consensus 68 g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 145 (388)
T PRK07337 68 GLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVE--RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGP 145 (388)
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCC
Confidence 467999999999998888754445699999999999888877655 899999999999999999999999999999874
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++.+.++++ +|++++++|+||.+.+ +++|+++|+++++ |+++|++|..+.+.. ...+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~-~~~~ 216 (388)
T PRK07337 146 AERFQLTAADVEAAWGERTR---GVLLASPSNPTGTSIAPDELRRIVEAVRARGG-----FTIVDEIYQGLSYDA-APVS 216 (388)
T ss_pred ccCCcCCHHHHHhhcCccce---EEEEECCCCCCCcCcCHHHHHHHHHHHHHCCC-----EEEEeccccccccCC-CCcC
Confidence 468999999998876554 6777889999999765 7889999999999 999999997654321 1111
Q ss_pred CCCCcccccEE-EEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh---hc
Q 011842 291 KVSFKKPIGSV-SVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY---KG 365 (476)
Q Consensus 291 ~~~~~~~~Dsi-~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~---~g 365 (476)
.... ..+++ ..|++|.+ ..++++|++++++++++.+.....+.. .+. ..+.++++...+.. ..
T Consensus 217 ~~~~--~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~-------~~~---s~~~q~~~~~~l~~~~~~~ 284 (388)
T PRK07337 217 ALSL--GDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLF-------ICA---SALAQHAALACFEPDTLAI 284 (388)
T ss_pred hhhc--cCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhc-------cCC---ChHHHHHHHHHhccCchHH
Confidence 1111 12444 45889988 478899999999887665533222211 011 12344444444422 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecC--------CcHHHh------hceeecc--------cCCE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERP--------QDEEFV------RRWQLAC--------QGNI 422 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~--------~~~~~~------~~~~l~~--------~~~~ 422 (476)
+++..++..++++++.+.|++.++... .+..++.+.+..+ ++.++. +++.+.. ..++
T Consensus 285 ~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~ 364 (388)
T PRK07337 285 YERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDY 364 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCE
Confidence 556667778888999999998876543 3444555555543 122322 2333321 2368
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+|+++.. +.++++..++.|.+
T Consensus 365 ~Ri~~~~--~~~~l~~~l~rl~~ 385 (388)
T PRK07337 365 IRLSYAT--SMSRLEEAVARLGK 385 (388)
T ss_pred EEEEecC--CHHHHHHHHHHHHH
Confidence 9999974 57777777666654
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-20 Score=187.04 Aligned_cols=288 Identities=12% Similarity=0.038 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
+..++++++++++.+..|+..++.++++|+|+++|+..++.+... |++.|+++.++|..+..+++.+|++++.+|.+
T Consensus 67 G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 144 (384)
T PRK06348 67 GDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILD--PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYE 144 (384)
T ss_pred CcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcC--CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCc
Confidence 456899999999988877765556799999999999998888765 89999999999999999999999999999874
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.++.+|+++|++.+.++++ +|++++++|+||.+-+ +++|+++|++|++ +|++|++|+.+.+.. ...+
T Consensus 145 ~~~~~~d~~~l~~~~~~~~~---~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~-~~~~ 215 (384)
T PRK06348 145 EDGFQINVKKLEALITSKTK---AIILNSPNNPTGAVFSKETLEEIAKIAIEYDL-----FIISDEVYDGFSFYE-DFVP 215 (384)
T ss_pred CcCCcCCHHHHHHhhCcCcc---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCe-----EEEEecccccceeCC-Cccc
Confidence 2456999999998865544 6677789999999864 7889999999999 999999998765432 2211
Q ss_pred CCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhc
Q 011842 291 KVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKG 365 (476)
Q Consensus 291 ~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g 365 (476)
...+. ..-.++..|+.|.++ .++++|++++++++++.+.....+. ..+. ..+.+.++...+. .+-
T Consensus 216 ~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~-------~~~~---~~~~q~~~~~~l~~~~~~ 285 (384)
T PRK06348 216 MATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGI-------CFSA---PTISQRAAIYALKHRDTI 285 (384)
T ss_pred hhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhc-------cCCC---CHHHHHHHHHHHhCcHHH
Confidence 11221 112356678899887 8899999999887765543222111 0111 1233333333332 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEE-EEecC----CcHHHh----h--ceeec-------ccCCEEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTV-VFERP----QDEEFV----R--RWQLA-------CQGNIAHVVV 427 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv-~f~~~----~~~~~~----~--~~~l~-------~~~~~lRv~~ 427 (476)
.++..+...++++++.+.|++.+...+.++..+.+ .+..+ ++.++. + ++.+. ...+.+|+++
T Consensus 286 ~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~ 365 (384)
T PRK06348 286 VPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLAC 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEe
Confidence 45566677778888999998864334445555444 34443 122222 2 23332 1236899998
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~ 446 (476)
. .+.++++..++.|+++
T Consensus 366 ~--~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 366 T--VGIEVLEEAFNRIEKM 382 (384)
T ss_pred c--CCHHHHHHHHHHHHhh
Confidence 5 5788888888877654
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=188.02 Aligned_cols=274 Identities=15% Similarity=0.069 Sum_probs=193.8
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++.++++++++++ .+++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+|.++++.+|++
T Consensus 64 ~lr~aia~~~~~~~~--~I~it~G~~~al~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 139 (353)
T PRK05387 64 ALRQAIAAYYGLDPE--QVFVGNGSDEVLAHAFLAFFN--HDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVE 139 (353)
T ss_pred HHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHhcC--CCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHH
Confidence 344445666677653 599999999999999888766 9999999999998888889999999999999888899999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh-CCCCCceEEEEecCcccccccccccCCCCCCcccccEE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSV 301 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi 301 (476)
+|++ .++ +|++++++|+||.+.+.+++.++++.+ ++ ++++|++|+.+... ...+..+.. .-.++
T Consensus 140 ~l~~----~~~---~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~-----~livDe~y~~~~~~--~~~~~~~~~-~~~i~ 204 (353)
T PRK05387 140 DYLR----PNG---GIIFPNPNAPTGIALPLAEIERILAANPDS-----VVVIDEAYVDFGGE--SAIPLIDRY-PNLLV 204 (353)
T ss_pred HHHh----cCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCc-----EEEEeCcccccCCc--chHHHHhhC-CCEEE
Confidence 9863 232 677889999999999999999999876 88 99999999643211 111111111 13578
Q ss_pred EEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHHHHH
Q 011842 302 SVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRNAHY 379 (476)
Q Consensus 302 ~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~ 379 (476)
+.|++|.++ .++++|+++.++++++.+........ ..+ ...+.++++...+.. +.+++..++..+++++
T Consensus 205 ~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~------~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 275 (353)
T PRK05387 205 VQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFN------SYP---LDRLAQAGAIAAIEDEAYFEETRAKVIATRER 275 (353)
T ss_pred EEehhHhhcchhhhceeeecCHHHHHHHHHhhccCC------CCC---cCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 889999886 77999999998877665532211110 011 113444444444432 3466778888889999
Q ss_pred HHHHHHhcCCeEeecCCeeEEEEecCC--cHHHhh-----ceee-----cccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 380 LKDRLLDAGISAMLNELSSTVVFERPQ--DEEFVR-----RWQL-----ACQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 380 l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~~-----~~~l-----~~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+.+.|++.|+. +.++.++++++..++ ..++.+ ++.+ +...+.+|++++ +.+++++++++|+++.
T Consensus 276 l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 276 LVEELEALGFE-VLPSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEIL 351 (353)
T ss_pred HHHHHHHCCCe-ECCCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHHh
Confidence 99999998864 445566676666553 233322 3333 112468999885 6799999999998865
Q ss_pred H
Q 011842 448 S 448 (476)
Q Consensus 448 ~ 448 (476)
.
T Consensus 352 ~ 352 (353)
T PRK05387 352 A 352 (353)
T ss_pred h
Confidence 3
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-20 Score=187.30 Aligned_cols=290 Identities=10% Similarity=-0.039 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|...+...+++|+|+++|+..++.+... ||+.|+++++.|..+...++..|++++.++.++
T Consensus 68 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 145 (386)
T PRK07550 68 GLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAG--AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDE 145 (386)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCC
Confidence 567999999999999888764455699999999999888877765 899999999999988888899999999999974
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++.++++++ +|++++++++||.+-+ +++|+++|++||+ ++++|++|+.+........+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~---~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~-----~iI~Dd~y~~~~~~~~~~~~ 217 (386)
T PRK07550 146 GPGLLPDPAAAEALITPRTR---AIALVTPNNPTGVVYPPELLHELYDLARRHGI-----ALILDETYRDFDSGGGAPHD 217 (386)
T ss_pred CcCCCCCHHHHHHHhcccCc---EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCe-----EEEEeccchhhccCCCCCcc
Confidence 356899999999976554 6667779999998865 8899999999999 99999999765322111111
Q ss_pred CCCCcc-c-ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhc
Q 011842 291 KVSFKK-P-IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKG 365 (476)
Q Consensus 291 ~~~~~~-~-~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g 365 (476)
.+.... . -.++..|++|.++ .++++|+++++++.++.+.....+. +...+ .+.++++...+. .+.
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~-----~~~~s-----~~~q~~~~~~l~~~~~~ 287 (386)
T PRK07550 218 LFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTV-----AICAP-----RIGQIAVAWGLPNLADW 287 (386)
T ss_pred hhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhc-----ccCCC-----cHHHHHHHHHhccHHHH
Confidence 111111 1 1345778999886 7899999999887665543211111 11111 233333333332 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC----cHHHh----h--ceeecc-------cCCEEEEEEc
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ----DEEFV----R--RWQLAC-------QGNIAHVVVM 428 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~----~~~~~----~--~~~l~~-------~~~~lRv~~~ 428 (476)
.++..+++.++++++.+.|+..+...+.+...+.+.+..+. ..++. + ++.+.. ..+++|+++.
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 367 (386)
T PRK07550 288 RAGNRAEIARRRDAFRAVFARLPGWELLASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA 367 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeCCCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee
Confidence 34455667778888999998863223334445555555442 23322 2 333321 2468999985
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~ 446 (476)
..+++++++.++.|.+.
T Consensus 368 -~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 368 -NADVAGIGELVERLRAF 384 (386)
T ss_pred -cCCHHHHHHHHHHHHhh
Confidence 35689999999888653
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=187.44 Aligned_cols=273 Identities=13% Similarity=0.016 Sum_probs=193.2
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
+++.+++++|.+.+ ..+++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+|+++++.+|++.
T Consensus 68 lr~~ia~~~~~~~~-~~I~~t~G~~~~i~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~ 144 (356)
T PRK04870 68 LKAALRAAMGVPAG-ADVLLGNGSDELIQLLALACAK--PGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPA 144 (356)
T ss_pred HHHHHHHHhCcCCC-CcEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHH
Confidence 33445556677532 2588999999998887777655 89999999999999999999999999999998788999999
Q ss_pred HHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEE
Q 011842 224 FKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302 (476)
Q Consensus 224 Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~ 302 (476)
|++++.. +++ +|+++++.|+||.+-+.+++.++++..+. ++++|++|..+... ...+.+.-.+ -..+.
T Consensus 145 l~~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~i~~~~~~-----~ii~De~y~~~~~~--~~~~~~~~~~-~vi~~ 213 (356)
T PRK04870 145 MLAAIAEHRPA---LVFLAYPNNPTGNLFDDADVERIIEAAPG-----LVVVDEAYQPFAGD--SWLPRLARFP-NLLVM 213 (356)
T ss_pred HHHHhhcCCCC---EEEEcCCCCCCCCCCCHHHHHHHHHHCCC-----EEEEECCchhhcCc--chHHHHhhCC-CEEEE
Confidence 9999975 343 77778899999999999999998888788 99999999754321 1111111111 23567
Q ss_pred EcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHHHHHHHH
Q 011842 303 VSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLRNAHYLK 381 (476)
Q Consensus 303 ~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~~l~ 381 (476)
.|++|++..++++|+++.++++++.+....... . ...+.+.++...+. .+.+++..++..++++++.
T Consensus 214 ~S~SK~~~~GlRiG~~i~~~~~i~~~~~~~~~~-------~-----~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 281 (356)
T PRK04870 214 RTVSKLGLAGLRLGYLAGHPAWIAELDKVRPPY-------N-----VNVLTQATALFALEHVDVLDAQAAQLRAERTRLA 281 (356)
T ss_pred ecchhhhhHHHhhhhhhCCHHHHHHHHHccCCC-------c-----CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 888998777899999999888776653321110 1 11233333333322 2336777788888999999
Q ss_pred HHHHhc-CCeEeecCCeeEEEEecCCcHHHhh-----ceeec-c------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 382 DRLLDA-GISAMLNELSSTVVFERPQDEEFVR-----RWQLA-C------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 382 ~~L~~~-g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~-~------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.|++. ++ .+.++.++.+.+..+....+.+ ++.+. . ..+.+|+++. +.+++++|+++|+++
T Consensus 282 ~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 282 AALAALPGV-TVFPSAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred HHHHhCCCc-EECCCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 999887 54 4455666777777764333322 23331 1 1368999886 799999999999865
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=189.04 Aligned_cols=289 Identities=11% Similarity=0.039 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCcc-cEEEcCCchhHHHHHHHHHHhhCC---CcEEEecCCCchHHHHHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELE-NNEY-WGYITNCGTEGNLHGILVGREVFP---DGILYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~-~~~~-~g~~t~ggt~An~~al~aa~~~~p---~~~Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
+..++++++.+|+.+..|++ .++. .+++|+|+++++..++.+..+ | ++.|+++.+.|..+..+++.+|++++.
T Consensus 66 G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~ 143 (396)
T PRK09147 66 GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVID--RDGPGPLVVCPNPFYQIYEGAALLAGAEPYF 143 (396)
T ss_pred CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcC--CCCCCCEEEEcCCCccchHHHHHhcCCEEEE
Confidence 45689999999999888865 3332 588999999999988888776 7 889999999999999999999999999
Q ss_pred EeCCCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCLIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
||++++ +.+|++.|++.+.++++ +++++++.|+||.+- .+++|+++|++|++ ||++|++|+.+.+..
T Consensus 144 vp~~~~~~~~~d~~~l~~~~~~~~k---~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~ 215 (396)
T PRK09147 144 LNCDPANNFAPDFDAVPAEVWARTQ---LLFVCSPGNPTGAVLPLDDWKKLFALSDRYGF-----VIASDECYSEIYFDE 215 (396)
T ss_pred eccCccccCccCHHHHHHHHhhccE---EEEEcCCCCCcCccCCHHHHHHHHHHHHHcCe-----EEEeeccccccccCC
Confidence 999743 57999999988865544 777789999999985 57888899999999 999999998765432
Q ss_pred cccC-CCCC----C--cc-cccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 286 VKKA-PKVS----F--KK-PIGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 286 ~~~~-~~~~----~--~~-~~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
.... +.+. . .. .--++..|+.| ++++++++|+++.++++++.+.....+.. .+. ..+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~-------~~~---~~~~q~a 285 (396)
T PRK09147 216 AAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHG-------CAM---PPAVQAA 285 (396)
T ss_pred CCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhcc-------cCC---CHHHHHH
Confidence 1010 0010 0 00 11256678889 56888999999998887766543222211 011 1233333
Q ss_pred HHHHhC-hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHhh------ceee-cc---------
Q 011842 357 TLNRKG-YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFVR------RWQL-AC--------- 418 (476)
Q Consensus 357 ~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~~------~~~l-~~--------- 418 (476)
++..+. ...+++..+...++++.+.+.|++. +....++.++.+.+..+ .+.++.+ +..+ +.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~ 364 (396)
T PRK09147 286 SIAAWNDEAHVRENRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHG 364 (396)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccC
Confidence 333332 2345666777788888888888874 32223445566666665 3333321 3332 10
Q ss_pred ---cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 ---QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 ---~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
..+++|+++.. ++++++..++.|.+..
T Consensus 365 ~~~~~~~iRi~~~~--~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 365 VNPGAGRVRIALVA--PLAECVEAAERIVDFC 394 (396)
T ss_pred CCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 13689998863 5778888888776654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=190.77 Aligned_cols=272 Identities=16% Similarity=0.083 Sum_probs=191.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++.+++++|++++ .+++|+|+++++..++.+... +++.|++++++|..+...++..|++++.+++++++.+|++
T Consensus 58 ~lr~~ia~~~~~~~~--~i~~~~G~~~~l~~~~~~l~~--~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 133 (346)
T TIGR01141 58 ELKQALADYYGVDPE--QILLGNGSDEIIELLIRAFLE--PGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLE 133 (346)
T ss_pred HHHHHHHHHhCcChH--HEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHH
Confidence 344556777777643 489999999998777776654 8899999999998888888999999999999888889999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
.|++++.++++ +|++++++|++|.+.|++++.++++.+ ++ ++++|++|+.+.... ......... ..++
T Consensus 134 ~l~~~~~~~~~---~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~-----~ii~D~~y~~~~~~~-~~~~~~~~~-~~~i 203 (346)
T TIGR01141 134 DILVAIDDKPK---LVFLCSPNNPTGNLLSRSDIEAVLERTPEDA-----LVVVDEAYGEFSGEP-STLPLLAEY-PNLI 203 (346)
T ss_pred HHHHhcCCCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEECchhhhcCCc-cHHHHHhhC-CCEE
Confidence 99998765554 778889999999999999999999987 88 999999997533210 110001101 1246
Q ss_pred EEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChh-cHHHHHHHHHHHHH
Q 011842 301 VSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYK-GFQKEVQKCLRNAH 378 (476)
Q Consensus 301 i~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~ 378 (476)
+..|++|+++ .++++|++++++++++.+...... ... ..+.+.++...+... .+.+..++..++++
T Consensus 204 ~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 271 (346)
T TIGR01141 204 VLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP-------FNL-----SRLAQAAAIAALRDDDFIEKTVEEINAERE 271 (346)
T ss_pred EEehhhHhhhchhhhceeeecCHHHHHHHHhccCC-------CCC-----CHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6788899994 567899999988776655322111 111 123444444444322 36777888889999
Q ss_pred HHHHHHHhc-CCeEeecCCeeEEEEecCC-cHHHhh-----ceeec-cc-----CCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 379 YLKDRLLDA-GISAMLNELSSTVVFERPQ-DEEFVR-----RWQLA-CQ-----GNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 379 ~l~~~L~~~-g~~~~~~~~~~iv~f~~~~-~~~~~~-----~~~l~-~~-----~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
++.+.|++. |+. +.++.+.++.+..+. ..++.+ ++.+. .. .+.+|++++ |++|+++++++|+
T Consensus 272 ~l~~~L~~~~g~~-~~~~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 272 RLYDGLKKLPGLE-VYPSDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred HHHHHHHhcCCCE-ECCCcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 999999987 554 445556677777653 333322 22221 11 478999865 8999999998873
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=188.30 Aligned_cols=286 Identities=10% Similarity=0.033 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++++++.+.+|.+.+.. ++++|+|+++++..++.+... +++.|++++++|..+...++..|++++.+|++
T Consensus 71 g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 148 (389)
T PRK08068 71 GYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMN--PGDTILVPDPGYPDYLSGVALARAQFETMPLI 148 (389)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCEEEEeecc
Confidence 567999999999988788654333 588999999999887777655 89999999999999999999999999999997
Q ss_pred C--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 I--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+ +..+|+++|++.+.++++ +|++++|+|+||.+-+ +++|+++|++|++ ++++|++|+.+.+......
T Consensus 149 ~~~~~~~d~~~l~~~~~~~~~---~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~-----~ii~Deay~~~~~~~~~~~ 220 (389)
T PRK08068 149 AENNFLPDYTKIPEEVAEKAK---LMYLNYPNNPTGAVATKAFFEETVAFAKKHNI-----GVVHDFAYGAIGFDGQKPV 220 (389)
T ss_pred cccCCCCCHHHHHHhccccce---EEEEECCCCCCCCcCCHHHHHHHHHHHHHcCe-----EEEEehhhhhhccCCCCCc
Confidence 4 356899999998865443 7778889999999976 4688889999999 9999999976543211111
Q ss_pred CCCCCc--ccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+..... ....+++.|+.|.+ .+++++|+++.++++++.+.....+. ..+.. +..+.++...+ +..
T Consensus 221 s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~-------~~~~~---~~~q~~~~~~l~~~~~ 290 (389)
T PRK08068 221 SFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHL-------FVSLF---GAIQDAAIEALLSDQS 290 (389)
T ss_pred ChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhc-------cCCCC---hHHHHHHHHHHhCcHH
Confidence 111111 11235667888988 48899999999887766653222211 11111 11222223332 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCC---cHHH----hh--ceeecc-------cCCEEEEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQ---DEEF----VR--RWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~---~~~~----~~--~~~l~~-------~~~~lRv~~ 427 (476)
.+++.+++..++++++.+.|++.|+. +.++.. ..+.+..++ ..++ .+ ++.+.. ..+++|+++
T Consensus 291 ~~~~~~~~~~~~r~~~~~~L~~~g~~-~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~ 369 (389)
T PRK08068 291 CVAELVARYESRRNAFISACREIGWE-VDAPKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGL 369 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCc-ccCCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEE
Confidence 46777888888999999999998864 334444 445556553 2233 21 344421 246899998
Q ss_pred cCCCCHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELI 444 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~ 444 (476)
. ..++.+...++.|.
T Consensus 370 ~--~~~~~l~~al~~l~ 384 (389)
T PRK08068 370 L--TDEERLREAVERIG 384 (389)
T ss_pred c--CCHHHHHHHHHHHH
Confidence 5 34555555555554
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=191.21 Aligned_cols=286 Identities=8% Similarity=0.001 Sum_probs=203.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++.+.+|+.+..+. +.++++|+|+++++..++.+..+ ||+.|++.+++|..+...++..|++++.+|+++
T Consensus 122 g~~~lr~~ia~~~~~~~~~---~~~Iiit~G~~~al~~~~~~l~~--pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 196 (431)
T PRK15481 122 VSPELHAWAARWLRDDCPV---AFEIDLTSGAIDAIERLLCAHLL--PGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA 196 (431)
T ss_pred CCHHHHHHHHHHHhhccCC---cCeEEEecCcHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC
Confidence 4467888888887664332 23599999999999999888776 999999999999999999999999999999976
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEe-eCCCccccccCHH---HHHHHHHHh-CCCCCceEEEEecCcccccccccccCC
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVN-IGTTVKGAVDDLD---LVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t-~gtt~tG~id~l~---~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+| +|++.|+++++.+++ +++++ ++.||||.+-+.+ +|.++|++| ++ ||++|++|+.+.... ..+
T Consensus 197 ~g-~~~~~l~~~~~~~~k---~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~-----~ii~De~Y~~~~~~~--~~~ 265 (431)
T PRK15481 197 EG-MQPEKLERALAQGAR---AVILTPRAHNPTGCSLSARRAAALRNLLARYPQV-----LVIIDDHFALLSSSP--YHS 265 (431)
T ss_pred CC-CCHHHHHHHHhcCCC---EEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCc-----eEEecCchhhhccCC--CCC
Confidence 54 899999999976544 55565 8999999998765 999999999 99 999999998654321 111
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc----H
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG----F 366 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g----~ 366 (476)
.+.....-.++..|+.|.+++++++|+++.++++++.+.....+.. .+ ...+.++++..++.... +
T Consensus 266 ~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~-------~~---~s~~~q~a~~~~l~~~~~~~~l 335 (431)
T PRK15481 266 VIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGT-------QW---VSHLLQDLVYACLTDPEYQARL 335 (431)
T ss_pred CCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccc-------cC---CCHHHHHHHHHHHhCccHHHHH
Confidence 1221112235667889988899999999998877665532212110 01 12345555555553222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHhh-----ceeec--------ccCCEEEEEEcCCCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFVR-----RWQLA--------CQGNIAHVVVMPNVT 432 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~~-----~~~l~--------~~~~~lRv~~~~~~T 432 (476)
++..+.+.++++++.+.|++.++....+..++.+.+..+. ..++.+ +..+. ..++.+|+++.. .+
T Consensus 336 ~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~ 414 (431)
T PRK15481 336 AQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LN 414 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CC
Confidence 5667778888899999999887644345566777777653 233322 22221 113579998864 46
Q ss_pred HHHHHHHHHHHHHHHH
Q 011842 433 IDKLDDFLNELIENRS 448 (476)
Q Consensus 433 ~edid~~~~~l~~~~~ 448 (476)
.++++.+++.|.++.+
T Consensus 415 ~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 415 DAEINRLAADLHQALN 430 (431)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8999999999988754
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-20 Score=188.78 Aligned_cols=292 Identities=10% Similarity=0.024 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHHHcC------CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEE
Q 011842 137 SRQFEVGVLDWFARLWE------LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g------~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
..++++++.+|+.+.++ ...++.++++|+|+++++..++.+... |++.|+++.++|..+...++..|++++.
T Consensus 77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~ 154 (412)
T PTZ00433 77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCD--EGDNILVPAPGFPHYETVCKAYGIEMRF 154 (412)
T ss_pred cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcC--CCCEEEEccCCcccHHHHHHHcCCEEEE
Confidence 45889999998887553 322334699999999999999888765 8999999999999999999999999999
Q ss_pred EeCCC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCLI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+|.++ ++.+|+++|++.+.++++ +|++++++|+||.+- .+++|+++|++||+ +|++|++|..+.+..
T Consensus 155 i~~~~~~~~~~d~~~l~~~~~~~~~---~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 155 YNCRPEKDWEADLDEIRRLVDDRTK---ALIMTNPSNPCGSNFSRKHVEDIIRLCEELRL-----PLISDEIYAGMVFNG 226 (412)
T ss_pred EecCccccCcCCHHHHHHHhccCce---EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCC-----eEEEeccccccccCC
Confidence 99863 468999999998876544 677889999999864 58888999999999 999999998665432
Q ss_pred cccCCCCCCccc-ccEEEEcCCCCC-CCCCCceeEEee------hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 286 VKKAPKVSFKKP-IGSVSVSGHKFV-GCPMPCGVQITR------MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 286 ~~~~~~~~~~~~-~Dsi~~s~hK~l-~~p~~~G~l~~~------~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
....+...+... --++..|+.|.+ ..++++|++++. +++++.+...... ..+ ...+.+.++
T Consensus 227 ~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~--------~~~---~~~~~q~a~ 295 (412)
T PTZ00433 227 ATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGML--------VCG---PCSVVQAAL 295 (412)
T ss_pred CCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhc--------cCC---CChHHHHHH
Confidence 111111222211 125667889987 788999999972 2344433221110 001 112333333
Q ss_pred HHHhC---hhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC--------cHHHh----h--ceeecc-
Q 011842 358 LNRKG---YKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ--------DEEFV----R--RWQLAC- 418 (476)
Q Consensus 358 l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~--------~~~~~----~--~~~l~~- 418 (476)
...+. ..-+++..+++.++++.+.+.|++. ++....+...+.+.++.+. +.++. + +..+..
T Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg 375 (412)
T PTZ00433 296 GEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPG 375 (412)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCc
Confidence 33332 2345666777888889999999875 4432333345555554432 22222 1 233321
Q ss_pred ----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 419 ----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 419 ----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+++|+++.. .+++++..++.|.+..+.+.
T Consensus 376 ~~f~~~~~iRis~~~--~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 376 EIFHMPGFTRLTISR--PVEVLREAVERIKAFCERHK 410 (412)
T ss_pred cccCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 14689999864 48889999999988776543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-20 Score=189.76 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---H--HHHcCCeEEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---A--ARMYRMECVKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~--~~~~G~~v~~v 211 (476)
...+|+.+++++++++|.+.. -+++++||+|+..++.+... ||+.|+++.++|.++.. . ....|++++.+
T Consensus 69 ~~~~e~~~~~~la~~~g~~~~---~i~~~sgt~al~~~l~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 143 (416)
T PRK00011 69 VDVVEQLAIDRAKELFGAEYA---NVQPHSGSQANAAVYFALLK--PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSY 143 (416)
T ss_pred HHHHHHHHHHHHHHHhCCCce---eeecCCchHHHHHHHHHhcC--CCCEEEEeccccCCccccccccccccceeeEeec
Confidence 445666678899999999753 24445678999888877754 89999999999976421 1 12335788888
Q ss_pred eCC-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 212 DCL-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 212 ~~~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+.+ +++.+|+++|++++.+ +++ +|+++. +.+|...|+++|.++|++||+ ++++|++|+.+........
T Consensus 144 ~~~~~~~~~d~~~l~~~i~~~~~k---~v~~~~--~~~~~~~~~~~I~~la~~~~~-----~livD~a~~~g~~~~g~~~ 213 (416)
T PRK00011 144 GVDEETGLIDYDEVEKLALEHKPK---LIIAGA--SAYSRPIDFKRFREIADEVGA-----YLMVDMAHIAGLVAAGVHP 213 (416)
T ss_pred CcCcccCCcCHHHHHHHHHhcCCC---EEEECC--CcCCCccCHHHHHHHHHHcCC-----EEEEECcchhcccccCccC
Confidence 887 3588999999999975 343 555532 355777899999999999999 9999999864433211111
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
..+. .+|+++.|+||++++ ++.|++++++ ++.+.+... ..+. .++.......+++.++.....++++
T Consensus 214 --~~~~-~~di~~~S~~K~l~g-~~gg~i~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~aa~~~a~~~~~~~~~~ 282 (416)
T PRK00011 214 --SPVP-HADVVTTTTHKTLRG-PRGGLILTNDEELAKKINSAVFPGI-------QGGPLMHVIAAKAVAFKEALEPEFK 282 (416)
T ss_pred --CCCC-CCcEEEecCCcCCCC-CCceEEEeCCHHHHHHHHHHhCccc-------cCCccHHHHHHHHHHHHHHHhhhHH
Confidence 1222 579999999999965 5567888864 555544221 1111 1122111222333444343345678
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC----cHHHh-----hceeec-----c------cCCEEEEE
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ----DEEFV-----RRWQLA-----C------QGNIAHVV 426 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~----~~~~~-----~~~~l~-----~------~~~~lRv~ 426 (476)
+++++..++++++++.|++.|+..... ..++++.+..++ ...+. +++.+. . ....+|++
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~ 362 (416)
T PRK00011 283 EYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIG 362 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEec
Confidence 899999999999999999988754421 234666666532 12221 222221 1 12458885
Q ss_pred EcC----CCCHHHHHHHHHHHHHHHH
Q 011842 427 VMP----NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 427 ~~~----~~T~edid~~~~~l~~~~~ 448 (476)
.+. ..|.+|+++++++|+++..
T Consensus 363 ~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 363 TPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred CHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 433 5689999999999988754
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-20 Score=188.26 Aligned_cols=295 Identities=13% Similarity=0.054 Sum_probs=199.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEE-eC
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKV-DC 213 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v-~~ 213 (476)
.+..++++++.+++.+..|...++.++++|+|+++|+..++.+..+ +++.|++++++|.++...++..|++++.+ +.
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~ 147 (398)
T PRK08363 70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--PGDEILIPGPSYPPYTGLVKFYGGVPVEYRTI 147 (398)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCEEEEeccc
Confidence 3567999999999988777654445699999999999988887755 99999999999999999999999988888 45
Q ss_pred CCC-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 214 LIS-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 214 ~~~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+++ +.+|++.|++.+.++++ +|++++++|+||.+-+ +++|+++|+++|+ ++++|++|+.+.+.. ...
T Consensus 148 ~~~~~~~d~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~-----~li~Deay~~~~~~~-~~~ 218 (398)
T PRK08363 148 EEEGWQPDIDDIRKKITEKTK---AIAVINPNNPTGALYEKKTLKEILDIAGEHDL-----PVISDEIYDLMTYEG-KHV 218 (398)
T ss_pred cccCCcCCHHHHHhhCCcceE---EEEEECCCCCCCcCcCHHHHHHHHHHHHHcCe-----EEEEhhhhhhhccCC-ccc
Confidence 543 57999999998865543 7777899999999866 8999999999999 999999998654421 111
Q ss_pred CCCCCcccc-cEEEEcCCCC-CCCCCCceeEEe--ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 290 PKVSFKKPI-GSVSVSGHKF-VGCPMPCGVQIT--RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 290 ~~~~~~~~~-Dsi~~s~hK~-l~~p~~~G~l~~--~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
+........ -++..|++|+ +..++++|++++ ++++++.+......+.. ..+..+ .+.+.++...+ ..
T Consensus 219 ~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~--~~~~~s-----~~~q~~~~~~l~~~~ 291 (398)
T PRK08363 219 SPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLAR--IRLCPN-----TPAQFAAIAGLTGPM 291 (398)
T ss_pred CHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhc--ccccCC-----hHHHHHHHHHHhCCh
Confidence 111111111 2445788997 678899999998 44444333211111000 011111 22333333333 23
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecCC-----cHHHh------hceeecc-------cCCEEE
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERPQ-----DEEFV------RRWQLAC-------QGNIAH 424 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~~-----~~~~~------~~~~l~~-------~~~~lR 424 (476)
+.+++..++..++++++.+.|++.+...+.++..+++.| ..+. +.++. ++..+.. ..+++|
T Consensus 292 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iR 371 (398)
T PRK08363 292 DYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFR 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEE
Confidence 456677788888999999999887433444555555554 3432 22221 1233311 136899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+++. .+.++++..++.|.+..+.
T Consensus 372 is~~--~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 372 LVFL--PPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EEec--CCHHHHHHHHHHHHHHHHH
Confidence 9985 4688999999988876654
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-19 Score=183.27 Aligned_cols=290 Identities=14% Similarity=0.004 Sum_probs=194.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++....|.+.+...+++|+|+|+|+.+++.+... +++.|++++++|..+...++..|++++.++.+.
T Consensus 74 g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 151 (403)
T TIGR01265 74 GALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALAN--PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLP 151 (403)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCc
Confidence 556788888888776555543345699999999999999888765 899999999999999999999999999998753
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|++.+++.+.++++ ++++++++|++|.+-+ +++|+++|+++|+ ++++|++|+.+........+
T Consensus 152 ~~~~~~d~~~l~~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~ 223 (403)
T TIGR01265 152 EKDWEIDLDGLEALADEKTV---AIVVINPSNPCGSVFSRDHLQKIAEVARKLGI-----PIIADEIYGHMVFGDAPFIP 223 (403)
T ss_pred ccCCccCHHHHHHHhCcCcc---EEEEecCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEccccccccCCCCccc
Confidence 467999999998876554 7778889999999954 8999999999999 99999999876543222111
Q ss_pred CCCCcccc-cEEEEcCCCC-CCCCCCceeEEeeh--hh-----hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 291 KVSFKKPI-GSVSVSGHKF-VGCPMPCGVQITRM--EH-----INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 291 ~~~~~~~~-Dsi~~s~hK~-l~~p~~~G~l~~~~--~~-----~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
........ -+++.|+.|. +..++++|++++.+ +. ++.+.....+ .. +.+ .+.+.++...+
T Consensus 224 ~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~------~~--~~~---~~~q~~~~~~l 292 (403)
T TIGR01265 224 MASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR------IL--GPA---TIVQGALPDIL 292 (403)
T ss_pred hhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh------hc--CCC---hHHHHHHHHHH
Confidence 11221111 2455678896 67789999999853 22 2222111100 00 111 22222222222
Q ss_pred ---ChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC--------cHHHhh------ceeecc-----
Q 011842 362 ---GYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ--------DEEFVR------RWQLAC----- 418 (476)
Q Consensus 362 ---g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~--------~~~~~~------~~~l~~----- 418 (476)
...-+++..+++.++++++.+.|+.. ++....++.++.+.++.+. +.++.+ +..+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~ 372 (403)
T TIGR01265 293 ENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG 372 (403)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC
Confidence 12345667778888889999999887 4432334456666665542 222222 222321
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+++|+++.. .++.++..++.|.++.+
T Consensus 373 ~~~~iRis~~~--~~~~l~~~l~~l~~~~~ 400 (403)
T TIGR01265 373 LPNWVRITITV--PESMLEEACSRIKEFCE 400 (403)
T ss_pred CCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 24689999873 47777777777766654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-20 Score=185.72 Aligned_cols=279 Identities=14% Similarity=0.147 Sum_probs=187.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc---------------EEEecCCCchH----H
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG---------------ILYASRESHYS----V 197 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~---------------~Vl~s~~~H~S----~ 197 (476)
..++.+++.+++++++|.+. +++|+|+|.|++.++.++.. +|+ +|+++.+.++. +
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~----~~~~~g~t~al~~al~al~~--~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~ 116 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVED----AVIVSSASAGIAQSVAAVIT--RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPV 116 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCe----EEEEcCHHHHHHHHHHHHhc--CCCcchhhcccccccccceEEEECccchhcCCch
Confidence 45888899999999999863 79999999999999988765 665 88887743332 3
Q ss_pred HHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecC
Q 011842 198 FKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGA 277 (476)
Q Consensus 198 ~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a 277 (476)
..++++.|++++.++. ++.+|+++|+++|.++++ .++.++++.+++|.+.|+++|+++|++||+ ++|+|++
T Consensus 117 ~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~--ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi-----~vivD~a 187 (363)
T TIGR01437 117 ETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTA--AILYIKSHHCVQKSMLSVEDAAQVAQEHNL-----PLIVDAA 187 (363)
T ss_pred HHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhce--EEEEEecCCCCcCCcCCHHHHHHHHHHcCC-----eEEEECC
Confidence 5677888999998876 457999999999988775 345567778899999999999999999999 9999999
Q ss_pred cccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 278 LFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
|+... ... .. .++|++++|+||++.+|. .|+++.++++++.+.....-+ ...+..+. ...+++.++
T Consensus 188 ~~~~~----~~~--~~--~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~---~~~~~~~~--~~~~gl~aA 253 (363)
T TIGR01437 188 AEEDL----QKY--YR--LGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI---GRAMKVGK--ENILGLTAA 253 (363)
T ss_pred CCCch----HHH--HH--cCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC---cceeccCH--HHHHHHHHH
Confidence 97211 000 01 137999999999998775 899888777665442111100 01111111 123556666
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC-C------eeEEEEecC----CcHHHhhcee-----ec---
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE-L------SSTVVFERP----QDEEFVRRWQ-----LA--- 417 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~-~------~~iv~f~~~----~~~~~~~~~~-----l~--- 417 (476)
+..+...+. +.+++..++++++.++|++. |+....++ . ...+.|... ...++.+.+. +.
T Consensus 254 l~~~~~~~~-~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~ 332 (363)
T TIGR01437 254 LEQYLSTGK-ESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRG 332 (363)
T ss_pred HHHHHccCc-ccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee
Confidence 665533232 33334445677899999987 44333221 1 244555531 2233333221 21
Q ss_pred --ccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 --CQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 --~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
...+.+|+.... ++++|+|.++++|+++
T Consensus 333 ~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 333 YKANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred eeecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 134567776654 6699999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-20 Score=189.04 Aligned_cols=292 Identities=10% Similarity=-0.007 Sum_probs=199.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++++.+|.+.+..++++|+|+++|+..++.+... +|+.|+++++.|..+...+...+..++.++++.
T Consensus 71 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~--~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~ 148 (402)
T PRK06107 71 GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLE--AGDEVIIPAPYWVSYPDMVLANDGTPVIVACPE 148 (402)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcC--CCCEEEEecCCCcCHHHHHHHcCCEEEEecCCc
Confidence 567999999999999989865455799999999999988876654 899999999988888888888898888888753
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHh-CCCCCceEEEEecCcccccccccccC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++.+|+++|++.+.+++ .+|++++++|+||.+-+ +++|+++|++| ++ ++++|++|+...+......
T Consensus 149 ~~~~~~~~~~l~~~~~~~~---~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~-----~iI~De~y~~l~~~~~~~~ 220 (402)
T PRK06107 149 EQGFKLTPEALEAAITPRT---RWLILNAPSNPTGAVYSRAELRALADVLLRHPHV-----LVLTDDIYDHIRFDDEPTP 220 (402)
T ss_pred ccCCCCCHHHHHhhcCcCc---eEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCe-----EEEEehhccccccCCCCCC
Confidence 35699999999886544 37778889999998864 67888889998 99 9999999985543221111
Q ss_pred CCCCCcc---cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 290 PKVSFKK---PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 290 ~~~~~~~---~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
+...... .-.++..|++|.++ .++++|+++.++++++.+.....+.. .. ...+.++++...+ +.
T Consensus 221 ~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~-----~~-----~s~~~q~~~~~~l~~~~ 290 (402)
T PRK06107 221 HLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSS-----SC-----PSSISQAAAAAALNGDQ 290 (402)
T ss_pred CHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhcc-----cC-----CChHHHHHHHHHhcCCh
Confidence 1111111 12345567799886 88999999998887665543222211 01 1234455555444 23
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeE-EEEec--------C------CcHHHh----h--ceeecc----
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSST-VVFER--------P------QDEEFV----R--RWQLAC---- 418 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~i-v~f~~--------~------~~~~~~----~--~~~l~~---- 418 (476)
..+++..+++.++++++.+.|++.+...+.++..+. +.++. + ++.++. + ++.+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~F 370 (402)
T PRK06107 291 SFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY 370 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcccc
Confidence 345666777788888899999886332333444443 33332 1 112222 2 233321
Q ss_pred -cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 -QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 -~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+++|+++. .+.|+++..++.|.+..++
T Consensus 371 g~~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 371 GLSPYFRLSIA--TSLETLEEACARIERAVAA 400 (402)
T ss_pred CCCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 1368999988 3699999999988877654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-19 Score=185.52 Aligned_cols=290 Identities=11% Similarity=0.067 Sum_probs=202.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+..|++.++. .+++|+|+++|+..++.+... +|+.|+++.+.|..+...++.+|++++.++.+
T Consensus 66 g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 143 (387)
T PRK07683 66 GLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILE--PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR 143 (387)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCC--CCCEEEEcCCCccchHHHHHHcCCEEEEeecC
Confidence 567999999999988777753333 599999999999988877655 89999999999999999999999999999987
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ +..+|+++|++.+.++++ ++++++++|+||.+- ++++|+++|+++|+ ++++|++|..+.+.. ...+
T Consensus 144 ~~~~~~~~~~l~~~~~~~~~---~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~-~~~~ 214 (387)
T PRK07683 144 STGFRLTAEALENAITEKTR---CVVLPYPSNPTGVTLSKEELQDIADVLKDKNI-----FVLSDEIYSELVYEQ-PHTS 214 (387)
T ss_pred cccCCCCHHHHHHhcCcCce---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCe-----EEEEecccccceeCC-CcCC
Confidence 4 456899999998876543 677889999999984 48899999999999 999999998665432 1212
Q ss_pred CCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 291 KVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 291 ~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
.....+ .-.++..++.|.++ .++++|+++++.++++.+.....|.. .+ . ..+.+.++...+ +...
T Consensus 215 ~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~------~~-~---~~~~q~~~~~~l~~~~~~ 284 (387)
T PRK07683 215 IAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNV------TC-A---SSISQYAALEALTAGKDD 284 (387)
T ss_pred hhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhcc------CC-C---ChHHHHHHHHHHhCChHH
Confidence 122211 12456688899887 88999999999887666543222211 11 1 122333333333 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecCC----cHHHh------hceeecc-------cCCEEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERPQ----DEEFV------RRWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~~----~~~~~------~~~~l~~-------~~~~lRv~~ 427 (476)
+++..++..++++++.+.|++.++. +.++..+.+.| ..+. +.++. +++.+.. ..+++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~ 363 (387)
T PRK07683 285 AKMMRHQYKKRRDYVYNRLISMGLD-VEKPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSY 363 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc-ccCCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEe
Confidence 5566777788889999999887754 33444444333 3332 22221 1333321 247899998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~ 449 (476)
.. +++++...++.|.++.++
T Consensus 364 ~~--~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 364 AY--SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred cC--CHHHHHHHHHHHHHHHHh
Confidence 74 688888888888876653
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-20 Score=169.52 Aligned_cols=285 Identities=16% Similarity=0.145 Sum_probs=217.2
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--CCCccCH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--ISGEIDC 221 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--~~g~~D~ 221 (476)
..+.+++++|++. .=+|.|+-+|-+.+|.+... +||.|+++..+||+-.-++...|+++..||.. ++..+++
T Consensus 66 F~~dlaeFlg~D~----~R~t~GARe~KfavMhal~~--~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~ 139 (382)
T COG1103 66 FLEDLAEFLGMDE----VRVTAGAREAKFAVMHALCK--EGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITP 139 (382)
T ss_pred HHHHHHHHhCCce----eeecccchhhHHHHHHHhcc--CCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecH
Confidence 3444899999985 66999999999999999887 99999999999999999999999999999964 5688999
Q ss_pred HHHHHHHHcC----CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 222 ADFKAKLLQN----KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 222 ~~Le~~l~~~----~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
+...+.|++- ++-|.+.++|++....|.+.|-+.++++|+++|+ .++..+||..+-+| ++..+.
T Consensus 140 e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gv-----PlllN~AYt~Grmp-------vs~ke~ 207 (382)
T COG1103 140 EGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGV-----PLLLNCAYTVGRMP-------VSGKEI 207 (382)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCC-----ceEeecceeecccc-------cccccc
Confidence 9998888653 2447899999999999999999999999999999 99999999988777 666664
Q ss_pred -ccEEEEcCCCCCCCCCCceeEEeehhhhhhh-cCCccccCC-CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 -IGSVSVSGHKFVGCPMPCGVQITRMEHINVL-SSNVEYLAS-RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 -~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l-~~~~~yl~~-~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+|+.|+||.+.+.-+||++.++.++.+.. ..+-.+... .-.-+.||..+.+.+.+.+++-..- + --.+++...
T Consensus 208 g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~-e-RVkrWdeEv 285 (382)
T COG1103 208 GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVV-E-RVKRWDEEV 285 (382)
T ss_pred CCCEEEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHH-H-HHHHHHHHH
Confidence 9999999999999989999999999875543 222222221 1233567777776666666654431 1 133556677
Q ss_pred HHHHHHHHHHHhcCCeEee---cCCeeEEEEecCCcHHHh-----hceeec-------------ccCCEEEEEEcCCCCH
Q 011842 375 RNAHYLKDRLLDAGISAML---NELSSTVVFERPQDEEFV-----RRWQLA-------------CQGNIAHVVVMPNVTI 433 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~---~~~~~iv~f~~~~~~~~~-----~~~~l~-------------~~~~~lRv~~~~~~T~ 433 (476)
+.+++|.+.|+.+|....+ |..+-.+.|..|.-.++. ++|.+- .....+.+++ ...|.
T Consensus 286 ~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI~~G~Tk~~K~sv-yGl~~ 364 (382)
T COG1103 286 EKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGIQPGQTKYFKLSV-YGLSW 364 (382)
T ss_pred HHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccccccCceeEEEEEe-ecCCH
Confidence 8999999999998743332 334567778777533332 233321 1123455554 46799
Q ss_pred HHHHHHHHHHHHHHHH
Q 011842 434 DKLDDFLNELIENRST 449 (476)
Q Consensus 434 edid~~~~~l~~~~~~ 449 (476)
|+++.++++++++.++
T Consensus 365 Eqve~V~~afkeI~ek 380 (382)
T COG1103 365 EQVEYVVDAFKEIAEK 380 (382)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999865
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=183.79 Aligned_cols=293 Identities=11% Similarity=0.075 Sum_probs=199.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|+..++. ..++|+|+++++...+.+... ||+.|++++++|..+...++..|++++.++.+
T Consensus 68 G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 145 (395)
T PRK08175 68 GIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLD--HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLV 145 (395)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHHcCCeEEEEecc
Confidence 567999999999998878764333 589999999998877766655 89999999999999888889999999999987
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCH---HHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL---DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l---~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+++ .+.++|++++.....++.++++++++|+||.+-+. ++|+++|++||+ ++++|++|+.+.+......+.
T Consensus 146 ~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i-----~ii~De~y~~l~~~~~~~~~~ 219 (395)
T PRK08175 146 EGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDV-----LVVHDLAYADIVYDGWKAPSI 219 (395)
T ss_pred cCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc-----EEEEecchHhhccCCCCCcch
Confidence 543 35889999887543334577788899999998775 799999999999 999999997655422111111
Q ss_pred CCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcH
Q 011842 292 VSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGF 366 (476)
Q Consensus 292 ~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~ 366 (476)
..... ...+++.|+.|.++ .++++|+++.++++++.+.....+.. .+.+. ..+.++...+ ....+
T Consensus 220 ~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~-------~~~~~---~~q~~~~~~l~~~~~~~ 289 (395)
T PRK08175 220 MQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHD-------YGTFT---PLQVAAIAALEGDQQCV 289 (395)
T ss_pred hcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcc-------cCCCc---HHHHHHHHHHhCcHHHH
Confidence 11111 12356688999984 67899999988877665543222211 11111 1222222222 12335
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc------HHHhh------ceeecc-------cCCEEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD------EEFVR------RWQLAC-------QGNIAHVVV 427 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~------~~~~~------~~~l~~-------~~~~lRv~~ 427 (476)
++..++..++++++.+.|++.|+....+..++.+.+..++. .++.+ +..+.. ..+.+|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~ 369 (395)
T PRK08175 290 RDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFAL 369 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEe
Confidence 66667777888999999999876433344567777766532 22321 333321 235899988
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
. .+.+.+...++.|.++.+
T Consensus 370 ~--~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 370 I--ENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred C--CCHHHHHHHHHHHHHHHH
Confidence 5 467777777777766554
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-19 Score=182.05 Aligned_cols=286 Identities=12% Similarity=0.048 Sum_probs=196.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCC---cEEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPD---GILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~---~~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
+..++++++.+++.+..|++.+.. .+++|+|++++++.++.+... ++ +.|+++.++|..+...++.+|++++.+
T Consensus 37 G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~--~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v 114 (350)
T TIGR03537 37 GTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFID--PEEDRRRVIFGTPGYPVYERGALFAGGEPTAV 114 (350)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcC--CCCCCceEEEcCCCCcchHHHHHhcCCEEEEc
Confidence 456999999999998888764444 699999999999988877765 55 699999999999999999999999999
Q ss_pred eCCC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 212 DCLI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 212 ~~~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+++. +..+|+++|++++.++++ ++++++++|+||.+-+ +++|+++|++||+ ++++|++|+......
T Consensus 115 ~~~~~~~~~~d~~~l~~~~~~~~~---~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~- 185 (350)
T TIGR03537 115 KLKKEDGFLLRLEKVEKSILEETK---IVWINYPHNPTGATAPRSYLKETIAMCREHGI-----ILCSDECYTEIYFGE- 185 (350)
T ss_pred ccCcccCCccCHHHHHHhhhhccE---EEEEeCCCCCcCcccCHHHHHHHHHHHHHcCc-----EEEEeccccccccCC-
Confidence 9863 345899999999877554 7778889999999877 8999999999999 999999997554321
Q ss_pred ccCCCCCCcccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hh
Q 011842 287 KKAPKVSFKKPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YK 364 (476)
Q Consensus 287 ~~~~~~~~~~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~ 364 (476)
...+.......-.++..|++|.+ .+++++|+++.++++.+.+.....+. ..+.+ .+.+.++...+. .+
T Consensus 186 ~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~q~~~~~~l~~~~ 255 (350)
T TIGR03537 186 PPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANF-------GVASP---DFVQAAAKAAWSDDN 255 (350)
T ss_pred CCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhh-------ccCCC---HHHHHHHHHHhCCcH
Confidence 11111111111135556889987 57889999998776665553222121 11111 122222222222 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCC---cHHHh-----hceeec-------ccCCEEEEEEc
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQ---DEEFV-----RRWQLA-------CQGNIAHVVVM 428 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~---~~~~~-----~~~~l~-------~~~~~lRv~~~ 428 (476)
..++..+++.++.+.+.+.|++.|+. +.++.. ..+.+..+. ...+. ++..+. ...+.+|+++.
T Consensus 256 ~~~~~r~~l~~~~~~~~~~l~~~g~~-~~~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~ 334 (350)
T TIGR03537 256 HVLERRKIFKRKRDLFIEFFNKVGLE-YLYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCc-ccCCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec
Confidence 45666777788888899999988764 334443 445455553 22232 223332 11468999875
Q ss_pred CCCCHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIE 445 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~ 445 (476)
.+.++++..+..|++
T Consensus 335 --~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 335 --PTLEECEEALRLWER 349 (350)
T ss_pred --CCHHHHHHHHHHHhc
Confidence 568888888877654
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=188.24 Aligned_cols=292 Identities=13% Similarity=0.073 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.++ +|.+. +++|+|||+|+..++.+..+ ||| |+++++.+.++...+++.|++++.+++++
T Consensus 79 g~~~Lreaia~~----~~~~~----vv~t~ggt~A~~~~~~all~--pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~ 147 (460)
T PRK13238 79 SYYRLEDAVKDI----FGYPY----TIPTHQGRAAEQILFPVLIK--KGD-VVPSNYHFDTTRAHIELNGATAVDLVIDE 147 (460)
T ss_pred CHHHHHHHHHHH----hCCCc----EEECCCHHHHHHHHHHHhCC--CCC-EEccCCcccchHHHHHHcCCEEEEEeccc
Confidence 456777775554 55542 89999999999999888766 899 88888766677777889999999999853
Q ss_pred ----------CCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccc-cc---cCHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 216 ----------SGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKG-AV---DDLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 216 ----------~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG-~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
.|.+|+++|++.|.+.+ .++.+|++++++|++| .+ +++++|+++|++||+ ++++|+++..
T Consensus 148 ~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi-----~li~Daa~~~ 222 (460)
T PRK13238 148 ALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGI-----PVVIDAARFA 222 (460)
T ss_pred cccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEECcchh
Confidence 24599999999998643 2355888999999998 44 567899999999999 9999998742
Q ss_pred --ccccc-----cccCCCCC----CcccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCC
Q 011842 281 --LMMPF-----VKKAPKVS----FKKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 281 --~~~~~-----~~~~~~~~----~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
.++.. ..+.+..+ .....|++++|+||.+.+|.| |++++++ ++.+.+...... ...-.++ ++-+.
T Consensus 223 e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~-~~g~~t~-~g~~~ 299 (460)
T PRK13238 223 ENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCIL-YEGFPTY-GGLAG 299 (460)
T ss_pred hhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccc-cCCcccc-cCcHH
Confidence 22211 11111000 012389999999999998875 8888885 455544322100 0000011 11111
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-----------CcHHHhhce---
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-----------QDEEFVRRW--- 414 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-----------~~~~~~~~~--- 414 (476)
....++..++...-. +..++...+++++|.+.|++.|+..+.+.....++.... ++..+...+
T Consensus 300 ~~~~Ala~~l~e~~~---~~~~~~~~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e 376 (460)
T PRK13238 300 RDMEALAVGLYEGMD---EDYLAYRIGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLE 376 (460)
T ss_pred HHHHHHHhhHHHhhC---hHHHHHHHHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHH
Confidence 111222222221111 234444555789999999999988776666666655431 112222111
Q ss_pred -ee---c-------c----------cCCEEEEEEcC-CCCHHHHHHHHHHHHHHHHH
Q 011842 415 -QL---A-------C----------QGNIAHVVVMP-NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 415 -~l---~-------~----------~~~~lRv~~~~-~~T~edid~~~~~l~~~~~~ 449 (476)
.+ + . ..+.+|+.+.. ..|.+++|.+++.|+++.+.
T Consensus 377 ~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 377 AGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred cCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 11 1 0 13678998764 44999999999999887643
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=184.68 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCc-ccEEEcCCchhHHHHHHHHHHhhCCCcE--EEecCCCchHHHHHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNE-YWGYITNCGTEGNLHGILVGREVFPDGI--LYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~--Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
+..++++++++|+.+..|++ .+. .++++|+|+++++..++.+..+ ||+. |+++.+.|..+...++..|++++.
T Consensus 65 G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~--~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~ 142 (393)
T TIGR03538 65 GLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVIN--PGQAPLVVMPNPFYQIYEGAALLAGAEPYF 142 (393)
T ss_pred CCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcC--CCCcceEEecCCCCcchHHHHHhcCCeEEE
Confidence 45689999999998887765 233 2588999999999988888766 7774 999999999999999999999999
Q ss_pred EeCCCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCLIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+|++++ +.+|+++|++++.++++ ++++++++|+||.+-+ +++|+++|++|++ +|++|++|..+.+..
T Consensus 143 v~~~~~~~~~~d~~~l~~~~~~~~k---~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~~~~~~ 214 (393)
T TIGR03538 143 LNCTAENGFLPDFDAVPESVWRRCQ---LLFVCSPGNPTGAVLSLDTLKKLIELADQYGF-----IIASDECYSELYFDE 214 (393)
T ss_pred eeccccCCCCCCHHHHHHHHhhcce---EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCE-----EEEECcchhhcccCC
Confidence 999643 46899999998876554 7777899999999866 7899999999999 999999998654421
Q ss_pred c-ccCCCC----CCc--c-cccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 286 V-KKAPKV----SFK--K-PIGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 286 ~-~~~~~~----~~~--~-~~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
. ...+.+ ... . .--+++.|+.| |+++++++|+++.++++++.+.....+.. .+ ...+.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~-------~~---~~~~~q~~ 284 (393)
T TIGR03538 215 GNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHG-------CA---MPIPTQLA 284 (393)
T ss_pred CCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhc-------cC---cCHHHHHH
Confidence 1 111100 000 0 11256788899 67889999999998877665532222211 01 11334444
Q ss_pred HHHHhC-hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHh----h--ceeec-c---------
Q 011842 357 TLNRKG-YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFV----R--RWQLA-C--------- 418 (476)
Q Consensus 357 ~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~----~--~~~l~-~--------- 418 (476)
++..+. .+.+++..++..++++.+.+.|++. +....+..++.+.+..+ ++.++. + +..+. .
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~ 363 (393)
T TIGR03538 285 SIAAWNDEQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEG 363 (393)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccC
Confidence 444442 2345666777788888888888765 22223445566666666 333332 1 33331 0
Q ss_pred ---cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 419 ---QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 419 ---~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
..+++|+++.. ++++++..++.|.+
T Consensus 364 ~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 364 VNPGEGRVRIALVA--PLEECVEAAERIRS 391 (393)
T ss_pred CCCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 13679998864 57888888877765
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=186.48 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC--
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-- 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-- 216 (476)
.+.+++.+.+++++|.+. ..++|+|+|.++..++.+... |++.|+++++.|.|+..++.+.|++++.++.+.+
T Consensus 59 g~i~~~~~~~A~~~ga~~---~~~~~~Gst~a~~~~l~al~~--~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~ 133 (294)
T cd00615 59 GPIKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAVCG--PGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPY 133 (294)
T ss_pred hHHHHHHHHHHHHhCCCC---EEEEcCcHHHHHHHHHHHcCC--CCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcc
Confidence 455677778899999763 245589999999998887765 9999999999999999999999999998877532
Q ss_pred ----CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 ----GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 ----g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.+|+++|++++.+++ .+.+|+++++ |++|.+.|+++|+++|++||+ +++||+||++.... ....+ .
T Consensus 134 ~~~~~~i~~~~l~~~l~~~~-~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~-----~livDeA~~~~~~~-~~~~~-~ 204 (294)
T cd00615 134 YGIAGGIPPETFKKALIEHP-DAKAAVITNP-TYYGICYNLRKIVEEAHHRGL-----PVLVDEAHGAHFRF-HPILP-S 204 (294)
T ss_pred cCcCCCCCHHHHHHHHHhCC-CceEEEEECC-CCCCEecCHHHHHHHHHhcCC-----eEEEECcchhhhcc-CcccC-c
Confidence 4799999999997643 2457777776 689999999999999999999 99999999864321 11111 1
Q ss_pred CCc-ccccEEEEcCCCCCCCCCCceeEEeehhhh--hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 293 SFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 293 ~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~--~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
... ..+|+++.|+||+++++.++|++.++++.. +.+......+. ..|.+.....++-.+++.+...| ++.
T Consensus 205 ~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~------ttsps~~~~asl~~a~~~~~~~g-~~~ 277 (294)
T cd00615 205 SAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQ------STSPSYLILASLDVARAMMALEG-KEL 277 (294)
T ss_pred chhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHHHHHC------CCCcHHHHHHHHHHHHHHHHHHh-HHH
Confidence 222 248999999999998777788888876521 11211111110 12222122223334444443334 556
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011842 370 VQKCLRNAHYLKDRLLD 386 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~ 386 (476)
+++..+++++++++|++
T Consensus 278 ~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 278 VEELIELALYARQEINK 294 (294)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88889999999988763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-19 Score=182.38 Aligned_cols=281 Identities=13% Similarity=0.108 Sum_probs=188.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC---CCcc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI---SGEI 219 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~---~g~~ 219 (476)
++++++++++|++++ ++++|+|+|+|+..++.+... +++.|+++++.|..+...++..|++++.++++. ++.+
T Consensus 70 ~lr~~ia~~l~~~~~--~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 145 (380)
T PRK06225 70 ELRELILKDLGLDDD--EALITAGATESLYLVMRAFLS--PGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKL 145 (380)
T ss_pred HHHHHHHHhcCCCCC--cEEEeCCHHHHHHHHHHHhcC--CCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccC
Confidence 455556777888754 599999999999999888765 889999999999888888899999999999742 3579
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++|++.+.++++ +++++++++++|.+- ++++|+++|++||+ ++++|++|+.+.... ........
T Consensus 146 d~~~l~~~~~~~~~---~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~---~~~~~~~~ 214 (380)
T PRK06225 146 TPELVKENMDENTR---LIYLIDPLNPLGSSYTEEEIKEFAEIARDNDA-----FLLHDCTYRDFAREH---TLAAEYAP 214 (380)
T ss_pred CHHHHHhhcCCCce---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCc-----EEEEehhHHHHhccC---CchhhcCC
Confidence 99999999876554 777778999999874 59999999999999 999999986443211 11011111
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~~~~~~~~ 373 (476)
...++..+++|+++ .++++|++++++++++.+.... . .+.. .+ .+.+.++...+. ..-+++..+..
T Consensus 215 ~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~-~-----~~~~--~~---~~~~~~a~~~l~~~~~~~~~~~~~~ 283 (380)
T PRK06225 215 EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIV-I-----NDLG--TN---VIAQEAAIAGLKVKDEWIDRIRRTT 283 (380)
T ss_pred CCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHH-h-----cccC--CC---HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 23455667889996 6688999999888766543211 0 0111 11 222222222221 12234444455
Q ss_pred HHHHHHHHHHHHhc-CCeE-eecCCeeEEEEecCC----cHHHh-----hceeecc--------cCCEEEEEEcCCCCHH
Q 011842 374 LRNAHYLKDRLLDA-GISA-MLNELSSTVVFERPQ----DEEFV-----RRWQLAC--------QGNIAHVVVMPNVTID 434 (476)
Q Consensus 374 ~~~a~~l~~~L~~~-g~~~-~~~~~~~iv~f~~~~----~~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~e 434 (476)
.++++++.+.|++. +... ..++.++++.+..+. ..++. +++.+.. ..+.+|+++. .++|
T Consensus 284 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e 361 (380)
T PRK06225 284 FKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFS--IPRE 361 (380)
T ss_pred HHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeC--CCHH
Confidence 56677788888874 4322 234455566555432 22222 2333321 1257999876 4799
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011842 435 KLDDFLNELIENRSTWY 451 (476)
Q Consensus 435 did~~~~~l~~~~~~~~ 451 (476)
+++.+++.|+++.+.+.
T Consensus 362 ~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 362 QVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=189.50 Aligned_cols=327 Identities=9% Similarity=-0.065 Sum_probs=207.7
Q ss_pred CCcccccccccCCCccccccCCCCCc-HHHHHHHHHHHHhcccccccCCCCcC-CcchHHHHHHHHHhhCCCCCCcccCc
Q 011842 55 KNVHASCFSVTEPEADDEFTGDKEAY-MAGVLARYRKTLMERTKHHLGYPYNL-DFDYGALAQLQHFSINNLGDPFIESN 132 (476)
Q Consensus 55 ~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~il~~~~~~~~~~~~~~~g~p~~~-~~~~~~l~~~l~~~~n~~g~~~~~~~ 132 (476)
++.+...+.+++|++.- +++.. +..++.-+.. . ...+.|... .+++..+.+.+.......+. ...++
T Consensus 36 ~g~~vi~l~iG~Pd~~~----~~~~~~~~~~~~~~~~----~--~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~-~~~Y~ 104 (407)
T PLN02368 36 EGKKIIFTNVGNPHALG----QKPLTFPRQVVALCQA----P--FLLDDPNVGLLFPADAIARAKHYLSLTSGG-LGAYS 104 (407)
T ss_pred HhhhhhcccCCChhHcC----CCCchHHHHHHHHhcC----c--hhcCCccccccCCHHHHHHHHHHHhcCCCC-CCCCC
Confidence 34567889999998741 11111 2334433322 1 123455421 12334444444432111111 11222
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-hhCCCcEEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 133 YGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 133 ~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
...+..++++++.+|+.+..|++.++.++++|+|+++++..++.+.. + ||+.|++++++|..+...++..|++++.+
T Consensus 105 ~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v 182 (407)
T PLN02368 105 DSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG--EKDGVLVPVPQYPLYSATISLLGGTLVPY 182 (407)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC--CCCEEEEeCCCCccHHHHHHHcCCEEEEE
Confidence 23356799999999999988876445579999999999998888765 4 89999999999999999999999999999
Q ss_pred eCCC--CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 212 DCLI--SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 212 ~~~~--~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
++++ ++.+|++.|++.+++. ..++.++++++|.|+||.+-+ +++|+++|++||+ ||++|++|+.+.+
T Consensus 183 ~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~-----~II~DE~Y~~l~y 257 (407)
T PLN02368 183 YLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERL-----VLLGDEVYQQNIY 257 (407)
T ss_pred ecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEcccccccc
Confidence 9874 3689999999999742 113457888899999999954 7788889999999 9999999987765
Q ss_pred ccc-ccCCCCC----C----ccc-ccEEEEcCCCCC--CCCCCceeEEe---ehhhhhhhcCCccccCCCCCcccCCCCC
Q 011842 284 PFV-KKAPKVS----F----KKP-IGSVSVSGHKFV--GCPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 284 ~~~-~~~~~~~----~----~~~-~Dsi~~s~hK~l--~~p~~~G~l~~---~~~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
... .+.+... . .+. --++..|+.|.+ +++|++||+++ +.++++.+.... .. ..+.
T Consensus 258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~-------~~~~-- 327 (407)
T PLN02368 258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SI-------ALSP-- 327 (407)
T ss_pred CCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cc-------cCCC--
Confidence 321 1111111 1 011 124456778875 48999999995 556665553321 11 0111
Q ss_pred hhHHHHHHHHHHhCh------------hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCCcHHH
Q 011842 349 HAPIFLWYTLNRKGY------------KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQDEEF 410 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~------------~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~~~~~ 410 (476)
..+.++++..++.. +..+++++.+.++++++.+.|++.+...+..|. +..++.+++-++..
T Consensus 328 -~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp~~~ 401 (407)
T PLN02368 328 -NVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPPKA 401 (407)
T ss_pred -CcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCCCHHH
Confidence 13455555555421 112345677888999999999997433344444 44444444433333
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=183.75 Aligned_cols=270 Identities=14% Similarity=0.036 Sum_probs=190.0
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
+++.+++.+|++++ ++++|+|+++++..++.+..+ +++.|++++++|..+...++..|++++.+|.++++.+|++.
T Consensus 83 Lr~aia~~~~v~~e--~I~it~Gs~~ai~~~~~~l~~--~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~ 158 (370)
T PRK09105 83 LRTLFAAQEGLPAD--HVMAYAGSSEPLNYAVLAFTS--PTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKA 158 (370)
T ss_pred HHHHHHHHhCcChh--hEEEcCChHHHHHHHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHH
Confidence 33345667788754 599999999999998887765 89999999999999999999999999999998788899999
Q ss_pred HHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCCcc-cccE
Q 011842 224 FKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGS 300 (476)
Q Consensus 224 Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Ds 300 (476)
|++. .++++ ++++++++|+||.+.+.++|.++++. +++ |+++|++|..+.. . .+..+... ..++
T Consensus 159 l~~~-~~~~~---~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~-----~lIvDEaY~~f~~-~---~s~~~~~~~~~~v 225 (370)
T PRK09105 159 MLAA-DPNAG---LIYICNPNNPTGTVTPRADIEWLLANKPAGS-----VLLVDEAYIHFSD-A---PSVVDLVAQRKDL 225 (370)
T ss_pred HHhc-CCCCC---EEEEeCCCCCCCcCcCHHHHHHHHHhCCCCc-----EEEEECchHHhcc-C---cchHHHHhhCCCE
Confidence 9876 33333 77888999999999999988888764 367 9999999954321 1 11112211 2344
Q ss_pred -EEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHHH
Q 011842 301 -VSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRNA 377 (476)
Q Consensus 301 -i~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a 377 (476)
+..|++|.++ .++++|+++.++++++.+... .+ .+ .....++++...+.. +.+++..++..+++
T Consensus 226 i~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~~---------~~---~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r 292 (370)
T PRK09105 226 IVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-GH---------NP---LPVPAAAAGLASLRDPKLVPQRRAENAAVR 292 (370)
T ss_pred EEEecccHhhcCCccceeeeecCHHHHHHHHhc-CC---------CC---cCHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4457889874 889999999988877665322 11 01 112344445544432 33566667788899
Q ss_pred HHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeec----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 378 HYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLA----CQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 378 ~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~----~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++.+.|++.|+. +.++..+.+.+..+. ..++. +++.+. ...+++|+++. +++++++|+++|+++.
T Consensus 293 ~~l~~~L~~~g~~-~~~~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 293 EDTIAWLKKKGYK-CTPSQANCFMVDVKRPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHCCCC-cCCCCCcEEEEeCCCCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 9999999998764 334555555565542 23332 233331 12478999876 6899999999998764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-19 Score=186.55 Aligned_cols=331 Identities=10% Similarity=-0.030 Sum_probs=216.6
Q ss_pred CCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC
Q 011842 103 PYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF 182 (476)
Q Consensus 103 p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~ 182 (476)
|....|+...+..+.....+..+.....+....|..++++.+.+|+.+..|++.+..++++|+|+++|+..++.+... .
T Consensus 136 ~~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~-~ 214 (534)
T PLN02231 136 ETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR-S 214 (534)
T ss_pred CccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc-C
Confidence 444556656666655543333232222223344788999999999999888776566799999999999998887753 2
Q ss_pred CCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC--CccCHHHHHHHHHcCC---CCcEEEEEeeCCCcccccc---CHH
Q 011842 183 PDGILYASRESHYSVFKAARMYRMECVKVDCLIS--GEIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAVD---DLD 254 (476)
Q Consensus 183 p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~--g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~id---~l~ 254 (476)
+++.|+++.+.|..+...++..|++++.++++++ +.+|+++|++++++.. .++.+++++++.|+||.+- .++
T Consensus 215 ~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~ 294 (534)
T PLN02231 215 EKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQR 294 (534)
T ss_pred CCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHH
Confidence 7899999999999999999999999999999753 6899999999997521 1345777788999999985 578
Q ss_pred HHHHHHHHhCCCCCceEEEEecCccccccccc-ccCCCCCC------cc-cccEE-EEcCCCCC--CCCCCceeEEe---
Q 011842 255 LVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-KKAPKVSF------KK-PIGSV-SVSGHKFV--GCPMPCGVQIT--- 320 (476)
Q Consensus 255 ~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~~~~~~~~------~~-~~Dsi-~~s~hK~l--~~p~~~G~l~~--- 320 (476)
+|+++|++||+ ||++|++|....+... ...+.... .+ ....+ ..|+.|.+ .+++++||+.+
T Consensus 295 ~Iv~~a~~~~l-----~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~ 369 (534)
T PLN02231 295 DIVEFCKQEGL-----VLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 369 (534)
T ss_pred HHHHHHHHcCC-----EEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecC
Confidence 99999999999 9999999987665321 11111111 01 12233 44788943 47999999986
Q ss_pred ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-----ChhcHH-------HHHHHHHHHHHHHHHHHHhcC
Q 011842 321 RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-----GYKGFQ-------KEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 321 ~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-----g~~g~~-------~~~~~~~~~a~~l~~~L~~~g 388 (476)
++++++.+...... . .++. .+.+.++...+ |...+. ++.+.+.++++++.+.|++.+
T Consensus 370 ~~~l~~~l~k~~~~------~-~~s~----~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~ 438 (534)
T PLN02231 370 TSDVREQIYKVASV------N-LCSN----ISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLE 438 (534)
T ss_pred CHHHHHHHHHHHhh------h-cCCC----hHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455544321111 0 1111 12333332222 112222 345677888999999999873
Q ss_pred CeEeecCCeeEEEE-ec--CCc------------HH-H----hh--ceee-ccc-------CCEEEEEEcCCCCHHHHHH
Q 011842 389 ISAMLNELSSTVVF-ER--PQD------------EE-F----VR--RWQL-ACQ-------GNIAHVVVMPNVTIDKLDD 438 (476)
Q Consensus 389 ~~~~~~~~~~iv~f-~~--~~~------------~~-~----~~--~~~l-~~~-------~~~lRv~~~~~~T~edid~ 438 (476)
...+.++..+.+.| +. +.. +. + .+ +..+ +.. ...+|+++ ..++++|+.
T Consensus 439 gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~--~~~~e~l~e 516 (534)
T PLN02231 439 GVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI--LPQEDKIPA 516 (534)
T ss_pred CceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe--CCCHHHHHH
Confidence 33445555555555 22 211 11 1 11 2222 211 23588877 478999999
Q ss_pred HHHHHHHHHHHHHh
Q 011842 439 FLNELIENRSTWYE 452 (476)
Q Consensus 439 ~~~~l~~~~~~~~~ 452 (476)
.++.|.+..+.+++
T Consensus 517 al~RL~~~~~~~~~ 530 (534)
T PLN02231 517 IVSRLTEFHKSFMD 530 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998888775
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=184.09 Aligned_cols=294 Identities=12% Similarity=0.033 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHHHHHc--CCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLW--ELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~--g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+.. ++++ .++++|+|+++++..++.+... ||+.|++++++|..+..+++..|++++.+++
T Consensus 73 G~~~lr~~ia~~~~~~~~~~~~~--~~i~~t~G~~~~l~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~ 148 (404)
T PRK09265 73 GLFSARKAIMQYYQQKGIPDVDV--DDIYIGNGVSELIVMAMQALLN--NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLC 148 (404)
T ss_pred CcHHHHHHHHHHHhccCCCCCCc--ccEEEeCChHHHHHHHHHHhCC--CCCEEEEeCCCCcChHHHHHHcCCEEEEEec
Confidence 45688888888876432 3443 4589999999999888877755 8999999999999999999999999998887
Q ss_pred CC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 LI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+. ++.+|+++|++.+.++++ +|++++++|+||.+.+ +++|+++|++||+ ++++|++|+.+.+.....
T Consensus 149 ~~~~~~~~d~~~l~~~~~~~~~---~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~~~~ 220 (404)
T PRK09265 149 DEEAGWFPDLDDIRSKITPRTK---AIVIINPNNPTGAVYSKELLEEIVEIARQHNL-----IIFADEIYDKILYDGAVH 220 (404)
T ss_pred ccccCCCCCHHHHHHhccccce---EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCC-----EEEEehhhhhccCCCCCc
Confidence 63 457999999998865554 7788899999999988 8999999999999 999999998665432211
Q ss_pred CCCCCCcccccEE-EEcCCCCC-CCCCCceeEEee-hh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-
Q 011842 289 APKVSFKKPIGSV-SVSGHKFV-GCPMPCGVQITR-ME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY- 363 (476)
Q Consensus 289 ~~~~~~~~~~Dsi-~~s~hK~l-~~p~~~G~l~~~-~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~- 363 (476)
.+.........++ ..|+.|.+ ++++++|++++. ++ ..+.+......+.. .... ...+.+.++...+..
T Consensus 221 ~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~q~~~~~~l~~~ 293 (404)
T PRK09265 221 ISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS--MRLC-----ANVPAQHAIQTALGGY 293 (404)
T ss_pred CCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhc--cccC-----CCcHHHHHHHHHhcCc
Confidence 1111111222333 45668987 678999999974 22 21111100001100 0011 112334444444432
Q ss_pred hcHHHH---HHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCC-------cHHHh------hceee-c------cc
Q 011842 364 KGFQKE---VQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQ-------DEEFV------RRWQL-A------CQ 419 (476)
Q Consensus 364 ~g~~~~---~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~-------~~~~~------~~~~l-~------~~ 419 (476)
+.+.+. .++..++++++.+.|++.+...+.++. .+.+.+..+. +.++. +++.+ + ..
T Consensus 294 ~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~ 373 (404)
T PRK09265 294 QSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPE 373 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCC
Confidence 122222 235667788888899876333334444 4455444432 22221 22323 1 12
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+.+|+++. .+.++++..++.|.+..+..
T Consensus 374 ~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 374 PDHFRIVTL--PRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred CCeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 468999984 68999999999998877643
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=183.46 Aligned_cols=280 Identities=15% Similarity=0.052 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCcc
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEI 219 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~ 219 (476)
..++.+.+++++|.+. .++|+|||+|+..++.+.+. .|++.|+++..+|.+...++...|++++.+++++ ++.+
T Consensus 20 ~~~~~~~la~~~~~~~----~~~~~sgt~al~~~l~~l~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 94 (352)
T cd00616 20 VREFEKAFAEYLGVKY----AVAVSSGTAALHLALRALGI-GPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNI 94 (352)
T ss_pred HHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHcCC-CCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 3445556777888642 88899999999998887632 3899999999999999999999999999999987 7889
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
|+++|++.+.++++ +|++++ ++|.+.|+++|.++|+++|+ ++++|++|+.+.....+. + ....|
T Consensus 95 d~~~l~~~i~~~~~---~v~~~~---~~G~~~~~~~i~~l~~~~~i-----~li~D~a~~~g~~~~~~~---~--~~~~d 158 (352)
T cd00616 95 DPELIEAAITPRTK---AIIPVH---LYGNPADMDAIMAIAKRHGL-----PVIEDAAQALGATYKGRK---V--GTFGD 158 (352)
T ss_pred CHHHHHHhcCcCCe---EEEEEC---CCCCcCCHHHHHHHHHHcCC-----eEEEECCCCCCCeECCEE---c--ccCcc
Confidence 99999999865553 666654 57999999999999999999 999999998554322111 1 11135
Q ss_pred EEEEc--CCCCCCCCCCceeEEeeh-hhhhhhcCCccccCCC-----CCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 300 SVSVS--GHKFVGCPMPCGVQITRM-EHINVLSSNVEYLASR-----DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 300 si~~s--~hK~l~~p~~~G~l~~~~-~~~~~l~~~~~yl~~~-----~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..++| .|||+++| ..|++++++ ++.+.+.....+.... .....+...+...+..+..+. ..+++++..+
T Consensus 159 ~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~--~l~~~~~~~~ 235 (352)
T cd00616 159 AGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLA--QLEKLDEIIA 235 (352)
T ss_pred eeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHH--HHHhhHHHHH
Confidence 55555 55999644 457777765 4443321100000000 000011111122233333332 2356788888
Q ss_pred HHHHHHHHHHHHHHhc-CCeEeecCC-----eeEEEEecCC-----cHHHhh-----ceee-----cc------------
Q 011842 372 KCLRNAHYLKDRLLDA-GISAMLNEL-----SSTVVFERPQ-----DEEFVR-----RWQL-----AC------------ 418 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~-g~~~~~~~~-----~~iv~f~~~~-----~~~~~~-----~~~l-----~~------------ 418 (476)
+..++++++++.|++. |+..+.++. ..+++|..++ ..++.+ +..+ +.
T Consensus 236 ~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~ 315 (352)
T cd00616 236 RRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGY 315 (352)
T ss_pred HHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCC
Confidence 8899999999999986 444332221 2466666542 222222 1111 10
Q ss_pred -----------cCCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 419 -----------QGNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 419 -----------~~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
..+.+|+++++.+|++||++++++|+
T Consensus 316 ~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 316 PPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 02579999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=184.48 Aligned_cols=274 Identities=11% Similarity=-0.020 Sum_probs=196.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++.+++++|++++ ++++|+|+++++..++.+... ||+.|++++++|..+...++..|++++.+|.++++.+|++
T Consensus 90 ~lr~~ia~~~~~~~~--~I~~t~Ga~~~i~~~~~~~~~--~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~ 165 (380)
T PLN03026 90 RLRAALAEDSGLESE--NILVGCGADELIDLLMRCVLD--PGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVP 165 (380)
T ss_pred HHHHHHHHHhCcChh--hEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHH
Confidence 355556677788754 489999999999888877655 8999999999998888888999999999999877889999
Q ss_pred HHHHHH-HcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEE
Q 011842 223 DFKAKL-LQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSV 301 (476)
Q Consensus 223 ~Le~~l-~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi 301 (476)
+|++++ .++++ +|++++++|+||.+.+.+++.++++.. + |+++|++|..+.... .....+. ...-.++
T Consensus 166 ~l~~~~~~~~~~---~v~l~~P~NPTG~~~~~~~l~~l~~~~-~-----~vi~DeaY~~~~~~~-~~~~~~~-~~~~viv 234 (380)
T PLN03026 166 RIVEAVETHKPK---LLFLTSPNNPDGSIISDDDLLKILELP-I-----LVVLDEAYIEFSTQE-SRMKWVK-KYDNLIV 234 (380)
T ss_pred HHHHHHhccCCc---EEEEeCCCCCCCCCCCHHHHHHHHhcC-C-----EEEEECcchhhcCCc-chHHHHH-hCCCEEE
Confidence 999998 44444 788889999999999999999999865 7 999999997543211 1111011 0112466
Q ss_pred EEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHHHHH
Q 011842 302 SVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRNAHY 379 (476)
Q Consensus 302 ~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~ 379 (476)
..++.|.++ +++++|+++.++++++.+...... .. ...+.+.++...+.. +-+++..++..+.+++
T Consensus 235 ~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~-------~~-----~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~ 302 (380)
T PLN03026 235 LRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP-------YN-----VSVAAEVAACAALSNPKYLEDVKNALVEERER 302 (380)
T ss_pred EecchHhhcCccccceeeecCHHHHHHHHHhcCC-------CC-----CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 788889886 899999999998877665322111 01 113344444444422 2356667778888999
Q ss_pred HHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeec-c----cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 380 LKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLA-C----QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 380 l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~-~----~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.+.|++.++....++.++.+.+..+. ..++. +++.+. + ..+.+|+++. +.+++++|+++|+++
T Consensus 303 l~~~L~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 303 LFGLLKEVPFLEPYPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred HHHHHHHCCCCeECCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 999999887655556677888887652 23332 233331 1 2368999986 788999999999753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-19 Score=181.58 Aligned_cols=290 Identities=12% Similarity=-0.008 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+ .+...+...+++|+|+++++..++.+... +++.|++++++|..+...++..|++++.++++.
T Consensus 74 g~~~lr~aia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~ 150 (401)
T TIGR01264 74 GALSAREAIASYYHN-PDGPIEADDVVLCSGCSHAIEMCIAALAN--AGQNILVPRPGFPLYETLAESMGIEVKLYNLLP 150 (401)
T ss_pred CCHHHHHHHHHHHhh-cCCCCCHHHEEECcChHHHHHHHHHHhCC--CCCEEEEeCCCChhHHHHHHHcCCEEEEeecCC
Confidence 556888888888876 34333344689999999999988887765 899999999999999999999999999998753
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|++.|++.+.++++ +|++++++|+||.+. ++++|+++|+++|+ ++++|++|..+.+......+
T Consensus 151 ~~~~~~d~~~l~~~~~~~~~---~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~ 222 (401)
T TIGR01264 151 DKSWEIDLKQLESLIDEKTA---ALIVNNPSNPCGSVFSRQHLEEILAVAERQCL-----PIIADEIYGDMVFSGATFEP 222 (401)
T ss_pred ccCCCCCHHHHHHHhccCce---EEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEhhhhhhccCCccccc
Confidence 468999999998876554 677888999999985 48899999999999 99999999876543211111
Q ss_pred CCCCcccc-cEEEEcCCC-CCCCCCCceeEEeehh------hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 291 KVSFKKPI-GSVSVSGHK-FVGCPMPCGVQITRME------HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 291 ~~~~~~~~-Dsi~~s~hK-~l~~p~~~G~l~~~~~------~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
........ -+++.|+.| |+..++++|++++.++ .++.+...... ..+.+ .+.+.++...+.
T Consensus 223 ~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~q~a~~~~l~ 291 (401)
T TIGR01264 223 LASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQR--------ILGPC---TIVQGALPSILL 291 (401)
T ss_pred HHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhhc--------cCCCC---cHHHHHHHHHHH
Confidence 11221111 256678889 5888999999998741 22222111000 00011 233333333331
Q ss_pred ---hhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecC--------CcHHH----hh--ceeecc-----c
Q 011842 363 ---YKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERP--------QDEEF----VR--RWQLAC-----Q 419 (476)
Q Consensus 363 ---~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~--------~~~~~----~~--~~~l~~-----~ 419 (476)
.+-+++.++++.++++++.+.|++. ++....+..++.+.+..+ .+.++ .+ +..+.. .
T Consensus 292 ~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~ 371 (401)
T TIGR01264 292 RTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY 371 (401)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC
Confidence 2446667778888889999999987 433233445555555532 12222 21 233321 2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+.+|+++.. ..++++..++.|.+..++
T Consensus 372 ~~~iRis~~~--~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 372 PGFFRVVLTV--PVVMMEEACSRIQEFCER 399 (401)
T ss_pred CCeEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 4789999873 578999988888877654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=8e-20 Score=185.77 Aligned_cols=271 Identities=12% Similarity=0.053 Sum_probs=185.1
Q ss_pred HHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 143 GVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
++++.+++++|++++ ..++ |+|+++++..++.+... |++.|+++.+.|..+...++..|++++.++.+.++.+|+
T Consensus 73 ~lr~~ia~~~~~~~~--~i~~~~~Ga~~~i~~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (361)
T PRK00950 73 ELREALSKYTGVPVE--NIIVGGDGMDEVIDTLMRTFID--PGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDV 148 (361)
T ss_pred HHHHHHHHHhCCCHH--HEEEeCCCHHHHHHHHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCH
Confidence 344446666788653 4777 66777777777666544 889999999998888888999999999999877779999
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEE
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSV 301 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi 301 (476)
++|++.+..+++ ++++++++++||.+.|+++|.++|+++|+ ++++|++|+.+.. ....+....... -++
T Consensus 149 ~~l~~~~~~~~~---~v~~~~p~nptG~~~~~~~l~~l~~~~~~-----~li~De~y~~~~~--~~~~~~~~~~~~-vi~ 217 (361)
T PRK00950 149 DSVLNAITEKTK---VIFLCTPNNPTGNLIPEEDIRKILESTDA-----LVFVDEAYVEFAE--YDYTPLALEYDN-LII 217 (361)
T ss_pred HHHHHHhccCCC---EEEEeCCCCCCCCCcCHHHHHHHHHHCCc-----EEEEECchhhhCc--cchHHHHHhcCC-EEE
Confidence 999999865544 77778999999999999999999999999 9999999975431 111110110011 245
Q ss_pred EEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHHHHHHHHHHH
Q 011842 302 SVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEVQKCLRNAHY 379 (476)
Q Consensus 302 ~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~ 379 (476)
..|++|.++ .++++|+++.++++++.+.....+. . ...+.+.+++..+...+ +++..++..+++++
T Consensus 218 ~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~ 285 (361)
T PRK00950 218 GRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPF-------S-----LTRLSQAAAIAALSDKEYIEKSIEHGIKSREY 285 (361)
T ss_pred EEeehHhhcCchhhcchhcCCHHHHHHHHHhcCCC-------C-----CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 678889886 6789999999888765553221111 1 11344444455443322 55666666677777
Q ss_pred HHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceee-cc------cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 380 LKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQL-AC------QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 380 l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l-~~------~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+.+.|+ + .+.++.++++.+..+. ..++. ++..+ ++ ..+.+|++++ +.+++++++++|++
T Consensus 286 l~~~l~---~-~~~~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~L~~ 358 (361)
T PRK00950 286 LYNELP---F-KVYPSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEILKE 358 (361)
T ss_pred HHhhcC---e-eECCCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHHHHH
Confidence 776664 2 2345566777666542 23332 23333 11 1357999986 78899999999987
Q ss_pred HH
Q 011842 446 NR 447 (476)
Q Consensus 446 ~~ 447 (476)
+.
T Consensus 359 il 360 (361)
T PRK00950 359 IV 360 (361)
T ss_pred Hh
Confidence 64
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=179.73 Aligned_cols=293 Identities=12% Similarity=0.032 Sum_probs=196.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++.+.+++.+..+...++..+++|+|+++++..++.+... +++.|++++++|..+...++..|++++.+++++
T Consensus 74 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~ 151 (394)
T PRK06836 74 GYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILN--PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDT 151 (394)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCC
Confidence 567888999999988766643344699999999999888877755 899999999999999999999999999999976
Q ss_pred C-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH------hCCCCCceEEEEecCcccccccc
Q 011842 216 S-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEE------SGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 216 ~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~------~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+ +.+|+++|++++.++++ +|++++++|+||.+.| +++|+++|++ ||+ ++++|++|..+....
T Consensus 152 ~~~~~d~~~l~~~~~~~~~---~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~-----~ii~De~y~~~~~~~ 223 (394)
T PRK06836 152 DTFQPDLDALEAAITPKTK---AVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPI-----YLISDEPYREIVYDG 223 (394)
T ss_pred ccCcCCHHHHHhhcCcCce---EEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCe-----EEEEeccccccccCC
Confidence 5 78999999999976554 7778889999999866 6777788888 899 999999997654422
Q ss_pred cccCCCCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhh--hcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 286 VKKAPKVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINV--LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 286 ~~~~~~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~--l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
..........+ -.++..|+.|.++ .+.++|+++++++..+. +.....+... . .+.- ....+.+.+....+.
T Consensus 224 ~~~~~~~~~~~-~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~~~q~~~~~~l~ 297 (394)
T PRK06836 224 AEVPYIFKYYD-NSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANR--I--LGFV-NAPALMQRVVAKCLD 297 (394)
T ss_pred CCCCChHHccC-cEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhh--c--cccc-cCCHHHHHHHHHHhC
Confidence 11111111111 2467788999887 78899999998764221 1000000000 0 0000 011233444333332
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeeccc-----CCEEEEEEcCC
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLACQ-----GNIAHVVVMPN 430 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~~-----~~~lRv~~~~~ 430 (476)
. + ...++..++++.+.+.|++.|+....+.....++...+. ..++. .++.+... .+.+|+++.
T Consensus 298 ~-~--~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~-- 372 (394)
T PRK06836 298 A-T--VDVSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC-- 372 (394)
T ss_pred C-h--HHHHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec--
Confidence 2 2 124455667788888998887643333333344444442 22222 12333222 468999997
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~~ 449 (476)
.++++++..+..|+++.+.
T Consensus 373 ~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 373 VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5799999999999888754
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-19 Score=179.96 Aligned_cols=278 Identities=11% Similarity=-0.040 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
+++++++ ++++++++ ++++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.+|.+.+ .
T Consensus 71 ~Lr~~ia----~~~~~~~~--~I~it~G~~~~l~~~~~~~~~--~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~ 141 (369)
T PRK08153 71 DLRHALA----AHHGVAPE--NIMVGEGIDGLLGLIVRLYVE--PGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-R 141 (369)
T ss_pred HHHHHHH----HHhCCCHH--HEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-C
Confidence 5555544 45577643 599999999998888777665 8999999999999999888999999999998655 4
Q ss_pred cCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 219 IDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 219 ~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
+|++++++.+.. +++ +++++++.|+||.+-+.+++.++++.+ ++ ||++|++|+.+.... ... .+...
T Consensus 142 ~~~~~l~~~~~~~~~~---~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~-----~lI~DE~y~~~~~~~-~~~-~~~~~ 211 (369)
T PRK08153 142 EDLDALLDAARRENAP---LVYLANPDNPMGSWHPAADIVAFIEALPETT-----LLVLDEAYCETAPAG-AAP-PIDTD 211 (369)
T ss_pred CCHHHHHHHhcccCCc---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEeCchhhhcCcc-cch-hhhhc
Confidence 899998877653 343 677788999999999988888888754 77 999999997554321 111 11111
Q ss_pred ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKC 373 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~ 373 (476)
..-.++..++.|.++ +++++|+++.++++++.+.....+. . ...+.++++...+.. +-+++..+..
T Consensus 212 ~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~~-------~-----~s~~~q~~~~~~l~~~~~~~~~~~~~ 279 (369)
T PRK08153 212 DPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF-------G-----MNRIAQAAALAALKDQAYLAEVVGKI 279 (369)
T ss_pred CCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcCC-------C-----CCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 112356778889886 8899999999887766553322111 1 123455555555532 2355666777
Q ss_pred HHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC----cHHHh-----hceeec-c----cCCEEEEEEcCCCCHHHHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ----DEEFV-----RRWQLA-C----QGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~----~~~~~-----~~~~l~-~----~~~~lRv~~~~~~T~edid~~ 439 (476)
.++++++.+.|++.|+. ..++.++++.+..+. ...+. +++.+. . ..+++|+++. +++++++|
T Consensus 280 ~~~r~~~~~~L~~~g~~-~~p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~ 355 (369)
T PRK08153 280 AAARDRIAAIARANGLT-PLPSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLF 355 (369)
T ss_pred HHHHHHHHHHHHHCCCc-cCCCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHH
Confidence 78888899999988864 345566776666542 12222 344441 1 2368999886 79999999
Q ss_pred HHHHHHHHHHHH
Q 011842 440 LNELIENRSTWY 451 (476)
Q Consensus 440 ~~~l~~~~~~~~ 451 (476)
+++|+++.....
T Consensus 356 ~~al~~~~~~~~ 367 (369)
T PRK08153 356 AEALPEALEAAR 367 (369)
T ss_pred HHHHHHHHHHhh
Confidence 999999876543
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=182.54 Aligned_cols=275 Identities=13% Similarity=0.014 Sum_probs=193.1
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
+++.+++++|++++ .+++|+|+++++...+.+... +++.|++++++|..+...++..|++++.+|.+ ++.+|+++
T Consensus 72 lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~ 146 (367)
T PRK02731 72 LKAALAEKFGVDPE--RIILGNGSDEILELLARAYLG--PGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK-DYGHDLDA 146 (367)
T ss_pred HHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHhcC--CCCEEEEecCCHHHHHHHHHHcCCeEEEeccc-CCCCCHHH
Confidence 44446666787643 489999999987776666544 88999999999988888888999999999984 57899999
Q ss_pred HHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCcc-c-cc
Q 011842 224 FKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-P-IG 299 (476)
Q Consensus 224 Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~-~D 299 (476)
|++.+.++++ +|++++++++||.+.++++|.++++.+ |+ |+++|++|..+........ .+.... . -.
T Consensus 147 l~~~~~~~~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-----~li~De~y~~~~~~~~~~~-~~~~~~~~~~~ 217 (367)
T PRK02731 147 MLAAVTPRTR---LVFIANPNNPTGTYLPAEEVERFLAGVPPDV-----LVVLDEAYAEYVRRKDYED-GLELVAKFPNV 217 (367)
T ss_pred HHHHhCCCCc---EEEEeCCCCCCCcCCCHHHHHHHHHhCCCCc-----EEEEECcHHHhccCcCccc-HHHHHhhcCCE
Confidence 9999975544 777889999999999999999999875 77 9999999876543211111 111111 1 23
Q ss_pred EEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChh-cHHHHHHHHHHHH
Q 011842 300 SVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYK-GFQKEVQKCLRNA 377 (476)
Q Consensus 300 si~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a 377 (476)
++..++.|.++ .++++|++++++++++.+...... +.. ..+.++++...+... .+++..++..++.
T Consensus 218 i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~~-------~~~-----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 285 (367)
T PRK02731 218 VVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQP-------FNV-----NSLALAAAVAALDDDAFVEKSRALNAEGM 285 (367)
T ss_pred EEEeeehHhhcCcccceeeeeCCHHHHHHHHHccCC-------CCC-----CHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45567889775 678999999998876655422111 111 235566666655433 3566777778888
Q ss_pred HHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeeccc-----CCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 378 HYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLACQ-----GNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 378 ~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~~~-----~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
+++.+.|++.|+.. .++.++++.+..++ ..++. ++..+... .+.+|++++ +.+++++|+++|+
T Consensus 286 ~~l~~~L~~~g~~~-~~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~ 361 (367)
T PRK02731 286 AWLTEFLAELGLEY-IPSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAALK 361 (367)
T ss_pred HHHHHHHHHCCCcc-CCCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHH
Confidence 99999999887644 35566777777642 22332 22333211 367999985 7899999999998
Q ss_pred HHHH
Q 011842 445 ENRS 448 (476)
Q Consensus 445 ~~~~ 448 (476)
++.+
T Consensus 362 ~~~~ 365 (367)
T PRK02731 362 EFLA 365 (367)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-19 Score=178.73 Aligned_cols=266 Identities=12% Similarity=0.002 Sum_probs=179.8
Q ss_pred HHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHH
Q 011842 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADF 224 (476)
Q Consensus 145 ~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~L 224 (476)
++.+++.+|++++ ++++|+|+++++..++. .. |++ +++..+++..+...++..|++++.+|+++++.+|++.+
T Consensus 64 r~aia~~~~~~~~--~I~it~Ga~~al~~~~~--l~--~~~-viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l 136 (349)
T PRK07908 64 RAAVAARHGRTPD--EVLLLAGAAEGFALLAR--LR--PRR-AAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV 136 (349)
T ss_pred HHHHHHHhCcChh--hEEECCCHHHHHHHHHh--cC--CCe-EEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHh
Confidence 3445555677653 59999999999987766 22 654 45567888888889999999999999987788898855
Q ss_pred HHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEE-E
Q 011842 225 KAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS-V 303 (476)
Q Consensus 225 e~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~-~ 303 (476)
.++++ ++++++++|+||.+.+.++|.++|++ +. ++++|++|+.++ +. ...+.... ..-+++. .
T Consensus 137 ----~~~~~---~i~l~np~NPTG~~~~~~~l~~l~~~-~~-----~iIvDe~y~~~~-~~-~~~~l~~~-~~~~~i~i~ 200 (349)
T PRK07908 137 ----PDDAD---LVVIGNPTNPTSVLHPAEQLLALRRP-GR-----ILVVDEAFADAV-PG-EPESLAGD-DLPGVLVLR 200 (349)
T ss_pred ----ccCCC---EEEEcCCCCCCCCCcCHHHHHHHHhc-CC-----EEEEECcchhhc-cC-Cccccccc-cCCCEEEEe
Confidence 33343 77778999999999999999999974 77 899999997543 21 11111111 1124444 4
Q ss_pred cCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh---ChhcHHHHHHHHHHHHHH
Q 011842 304 SGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK---GYKGFQKEVQKCLRNAHY 379 (476)
Q Consensus 304 s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~---g~~g~~~~~~~~~~~a~~ 379 (476)
|++|.++ +++++|+++.++++++.+....... ..+ .+.+.+....+ ....+++..++..+++++
T Consensus 201 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~ 268 (349)
T PRK07908 201 SLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW-------PVG-----TLQLEAIAACCAPRAVAEAAADAARLAADRAE 268 (349)
T ss_pred ecccccCCccceeeeeecCHHHHHHHHhcCCCC-------Ccc-----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 8899775 8899999999888776654321111 001 11222211111 123456677888889999
Q ss_pred HHHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 380 LKDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 380 l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+.+.|++.++....++.++.+.+..++.+.+. +++.+.. ..+++|+++ .+++++++|+++|+++.
T Consensus 269 l~~~L~~~~~~~~~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~---~~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 269 MVAGLRAVGARVVDPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV---RPRAEVPVLVQALAEIL 345 (349)
T ss_pred HHHHHHhCCcEeccCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe---CCCccHHHHHHHHHHHH
Confidence 99999988754444466777777776543332 2233321 246899998 47899999999998764
Q ss_pred H
Q 011842 448 S 448 (476)
Q Consensus 448 ~ 448 (476)
.
T Consensus 346 ~ 346 (349)
T PRK07908 346 K 346 (349)
T ss_pred h
Confidence 3
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=181.61 Aligned_cols=294 Identities=12% Similarity=-0.037 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-HHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-RMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~~~G~~v~~v~~~ 214 (476)
+..++++++.+|+.+..|++.+..++++|+|+++|+..++. +.. ||+.|++.+++|..+..+. ...|++++.+|++
T Consensus 74 G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~--~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~ 150 (433)
T PRK06855 74 GVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLR--REARVIGPSPAYSTHSSAEAAHAGYPPVTYRLD 150 (433)
T ss_pred CCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcC--CCCeEEEeCCCCchHHHHHHHhcCCeEEEEecc
Confidence 56799999999999987876555579999999999988764 444 8999999999998766443 3458888999987
Q ss_pred C--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 I--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+ ++.+|+++|++++....+ +.+++++++.|+||.+-+ +++|+++|++||+ ||++|++|+.+.+......
T Consensus 151 ~~~~~~~d~~~l~~~~~~~~~-~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~-----~II~De~Y~~l~~~~~~~~ 224 (433)
T PRK06855 151 PENNWYPDLDDLENKVKYNPS-IAGILLINPDNPTGAVYPKEILREIVDIAREYDL-----FIICDEIYNNIVYNGKKTV 224 (433)
T ss_pred cccCCCCCHHHHHHHHhcCCC-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEeccccccccCCCCCC
Confidence 4 356899999999974322 236667789999999965 6788888999999 9999999987765322222
Q ss_pred CCCCCc-ccccEEEEcCCCCCC-CCCCceeEEeeh----h----hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 290 PKVSFK-KPIGSVSVSGHKFVG-CPMPCGVQITRM----E----HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 290 ~~~~~~-~~~Dsi~~s~hK~l~-~p~~~G~l~~~~----~----~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
+..... +.-.++..|+.|.++ +++++||+++++ + .++.+. .+.. ...+ ...+.+.++..
T Consensus 225 sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~---~~~~-----~~~~---~~~~~Q~a~~~ 293 (433)
T PRK06855 225 PLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSIL---NAKM-----IEVC---STTLPQMAIPR 293 (433)
T ss_pred CHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHH---Hhhc-----cccC---CChHHHHHHHH
Confidence 211221 111256788899884 899999999842 1 122221 1100 0011 12345555555
Q ss_pred HhCh----hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCCc---------------------------
Q 011842 360 RKGY----KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQD--------------------------- 407 (476)
Q Consensus 360 ~~g~----~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~~--------------------------- 407 (476)
.+.. +-+++..+.+.++++.+.+.|++.+...+.+|.. ..+.+..++.
T Consensus 294 ~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (433)
T PRK06855 294 IMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPV 373 (433)
T ss_pred hhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCC
Confidence 5532 2355666677788888999998763333444544 4444444421
Q ss_pred ---HHHh----h--ceee-c-----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 ---EEFV----R--RWQL-A-----CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 ---~~~~----~--~~~l-~-----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++. . +..+ + ..+..+|+++.. .+.++|+..++.|.++.++.
T Consensus 374 ~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 374 SPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred CchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHH
Confidence 1222 1 1222 1 123458999875 57999999999998887653
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-19 Score=180.33 Aligned_cols=276 Identities=11% Similarity=-0.003 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.+++++ +++++|++++ ++++|+|+++++..++.+..+ ||+.|+++.++|..+...++..|++++.||.+ ++
T Consensus 67 ~~Lr~a----ia~~~~~~~~--~I~vt~Gs~e~i~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~ 137 (366)
T PRK01533 67 TTLRQT----IANKLHVKME--QVLCGSGLDEVIQIISRAVLK--AGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NG 137 (366)
T ss_pred HHHHHH----HHHHhCCCcc--eEEECCCHHHHHHHHHHHhcC--CCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CC
Confidence 355555 4555688754 599999999999988888765 89999999999999999999999999999986 56
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH---HhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE---ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~---~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.+|+++|++++.++++ ++++++++|+||.+-+.+++.++++ +++ ++++|++|..+.... ...+.+..
T Consensus 138 ~~d~~~l~~~~~~~~~---~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~------~~iiDe~y~~~~~~~-~~~~~~~~ 207 (366)
T PRK01533 138 VYDLDEISSVVDNDTK---IVWICNPNNPTGTYVNDRKLTQFIEGISENT------LIVIDEAYYEYVTAK-DFPETLPL 207 (366)
T ss_pred CcCHHHHHHHhCcCCc---EEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC------EEEEEccHHHhhccc-cCcchhHH
Confidence 7999999999876554 7778899999999988777766665 333 577899997543321 11111111
Q ss_pred cc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHH
Q 011842 295 KK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEV 370 (476)
Q Consensus 295 ~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~ 370 (476)
.. .-.++..|+.|.++ +++++|++++++++++.+..... . .+ ...+.+.++...+.... .++..
T Consensus 208 ~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~-------~--~~---~~~~~q~aa~~~l~~~~~~~~~~ 275 (366)
T PRK01533 208 LEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL-------P--FN---VSSLAQKAATIAFGDDEFIEEIV 275 (366)
T ss_pred hccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC-------C--CC---cCHHHHHHHHHHhCCHHHHHHHH
Confidence 11 12356678899875 89999999998877766532211 0 11 22456666666654333 34455
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+...+.++++.+.++..|+. +.++.++.+.+..++..++. +++.+..-.+++|+++ -+.++.++|+++|++
T Consensus 276 ~~~~~~r~~~~~~l~~~g~~-~~~~~~nf~~~~~~~~~~~~~~l~~~GI~Vr~~~~~iRis~---~~~~~~~~l~~al~~ 351 (366)
T PRK01533 276 RVNTEGLRQYESFCKENEIP-FYQSQTNFIFLPVENGGEIYEACAHAGFIIRPFPNGVRITV---GTREQNEGVISVLQQ 351 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCc-cCCCcCcEEEEeCCCHHHHHHHHHHCCcEEccCCCceEEeC---CCHHHHHHHHHHHHH
Confidence 66667788888888888764 44566777777766543332 2333322246789987 578999999999987
Q ss_pred HHH
Q 011842 446 NRS 448 (476)
Q Consensus 446 ~~~ 448 (476)
+.+
T Consensus 352 ~~~ 354 (366)
T PRK01533 352 HFE 354 (366)
T ss_pred HHH
Confidence 643
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=183.76 Aligned_cols=270 Identities=11% Similarity=0.017 Sum_probs=187.0
Q ss_pred HHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 145 LDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 145 ~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
++.+++++|++++ ++++|+|+++++...+.+... |+ +.|+++.++|..+...++..|++++.+|+++++.+|++.
T Consensus 66 r~aia~~~~~~~~--~I~it~Gs~~~i~~~~~~~~~--~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~ 141 (354)
T PRK04635 66 INAYSAYAGVAPE--QILTSRGADEAIELLIRAFCE--PGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDY 141 (354)
T ss_pred HHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHHhcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHH
Confidence 3445566788764 599999999999988887654 77 899999999999999999999999999998778899998
Q ss_pred HHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh-CCCCCceEEEEecCcccccccccccCCCCCCcccccEEE
Q 011842 224 FKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302 (476)
Q Consensus 224 Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~ 302 (476)
++ .+ ++++ +|++++++|+||.+-+.+++.++++.+ ++ +|++|++|..+... ............+ ++.
T Consensus 142 l~-~~-~~~~---li~i~nP~NPTG~~~~~~~l~~l~~~~~~~-----~vivDeay~~~~~~-~s~~~~~~~~~~~-iv~ 209 (354)
T PRK04635 142 IE-QL-DGAK---LVFICNPNNPTGTVIDRADIEQLIEMTPDA-----IVVVDEAYIEFCPE-YSVADLLASYPNL-VVL 209 (354)
T ss_pred HH-hc-cCCC---EEEEeCCCCCCCccCCHHHHHHHHHhCCCc-----EEEEeCchHhhccC-cchHHHHhhCCCE-EEE
Confidence 87 33 3444 788889999999999999999999874 67 99999999654321 1000000111122 467
Q ss_pred EcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---hhcHHHHHHHHHHHHH
Q 011842 303 VSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---YKGFQKEVQKCLRNAH 378 (476)
Q Consensus 303 ~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~ 378 (476)
.|++|+++ +++++|++++++++++.+...... . +. ....+.+++..+. .+.+++.+++..++++
T Consensus 210 ~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~-------~--~~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~ 277 (354)
T PRK04635 210 RTLSKAFALAGARCGFTLANEELIEILMRVIAP-------Y--PV---PLPVSEIATQALSEAGLARMKFQVLDLNAQGA 277 (354)
T ss_pred echHHHhhhhHHHHhhhhCCHHHHHHHHhhcCC-------C--CC---CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 78999986 789999999998877655321110 0 11 1223333444442 2334556677778889
Q ss_pred HHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeec-c----cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 379 YLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLA-C----QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 379 ~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~-~----~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
++.+.|++.+...+.++..+.+.++.++..++.+ +..+. . ..+.+|+++ .+.+|+++|+++|++
T Consensus 278 ~l~~~L~~~~~~~~~~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~---~~~e~~~~l~~al~~ 351 (354)
T PRK04635 278 RLQAALSMYGGAKVLEGNGNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSF---SNRAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHhCCCceECCCCCcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe---CCHHHHHHHHHHHHH
Confidence 9999999887334455556666666654433321 22231 1 246899997 489999999999964
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=181.82 Aligned_cols=276 Identities=12% Similarity=0.029 Sum_probs=193.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..+++++ +++++++++ ..+++|+|+++++...+.+..+ +++.|++++++|..+...+...|++++.+|++ +
T Consensus 66 ~~~lr~~----ia~~~~~~~--~~i~~t~G~~~~l~~~~~~~~~--~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~ 136 (359)
T PRK03158 66 APELRTK----VAKHLGVDE--EQLLFGAGLDEVIQMISRALLN--PGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-D 136 (359)
T ss_pred HHHHHHH----HHHHhCCCH--HHEEECCCHHHHHHHHHHHHhC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-C
Confidence 3455555 555567764 3599999999999877766655 89999999999999999999999999999997 6
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+.+|++.|++.+.++++ ++++++++|+||.+-+.++|.++++. +|+ ++++|++|+.+....... +.+..
T Consensus 137 ~~~d~~~l~~~~~~~~~---~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~-----~ii~De~y~~~~~~~~~~-~~~~~ 207 (359)
T PRK03158 137 GGHDLEAMLKAIDEQTK---IVWICNPNNPTGTYVNHEELLSFLESVPSHV-----LVVLDEAYYEYVTAEDYP-DTLPL 207 (359)
T ss_pred CCcCHHHHHHhcCCCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEECchHhhcCCcccc-cHHHH
Confidence 78999999998866554 77778999999999999999999987 477 999999997655422111 11111
Q ss_pred c-c-cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHH
Q 011842 295 K-K-PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEV 370 (476)
Q Consensus 295 ~-~-~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~ 370 (476)
. . .-.++..++.|.++ +++++|++++++++++.+...... +. ...+.+.++...+.... .++..
T Consensus 208 ~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~-------~~-----~~~~~q~~~~~~l~~~~~~~~~~ 275 (359)
T PRK03158 208 LEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP-------FN-----TTRIAQYAAIAALEDQAFLKECV 275 (359)
T ss_pred HHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC-------CC-----CCHHHHHHHHHHhcCHHHHHHHH
Confidence 1 1 13466678889887 679999999988877665322111 11 12455555555553322 45555
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeecc-----cCCEEEEEEcCCCCHHHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLAC-----QGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~~-----~~~~lRv~~~~~~T~edid~~ 439 (476)
+...++++++.+.|++.|+.. .++.++++.+..+. ..++. ++..+.. ..+++|+++. +.+++++|
T Consensus 276 ~~~~~~~~~~~~~l~~~~~~~-~~~~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l 351 (359)
T PRK03158 276 EKNAEGLEQYYAFCKEYGLFY-YPSQTNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHCCCee-CCCcCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHH
Confidence 666778888888998887543 45556666665542 23332 2333322 2468999875 89999999
Q ss_pred HHHHHHH
Q 011842 440 LNELIEN 446 (476)
Q Consensus 440 ~~~l~~~ 446 (476)
+++|+++
T Consensus 352 ~~al~~~ 358 (359)
T PRK03158 352 IELLKEL 358 (359)
T ss_pred HHHHHHh
Confidence 9999875
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=184.21 Aligned_cols=267 Identities=16% Similarity=0.141 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
....++.+.++++.|.+. .+++++|+.|+..++.+... +++.|+++...|.+.. ..++..|++++.++.+
T Consensus 40 p~~~~le~~la~l~g~~~----a~~~~sG~~Ai~~~l~~l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 113 (369)
T cd00614 40 PTVDALEKKLAALEGGEA----ALAFSSGMAAISTVLLALLK--AGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD 113 (369)
T ss_pred hhHHHHHHHHHHHHCCCC----EEEEcCHHHHHHHHHHHHcC--CCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC
Confidence 444455566778888753 78899999999999988765 8999999999987754 3455679999988875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|++++++++.++++ +|++.+++|++|.+.|+++|+++|++||+ ++++|++|+.++.. .. +.
T Consensus 114 -----d~~~l~~~i~~~~~---~v~~e~~~np~g~~~dl~~i~~la~~~g~-----~livD~t~~~~~~~--~~---~~- 174 (369)
T cd00614 114 -----DPEALEAAIKPETK---LVYVESPTNPTLKVVDIEAIAELAHEHGA-----LLVVDNTFATPYLQ--RP---LE- 174 (369)
T ss_pred -----CHHHHHHhcCCCCe---EEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCcchhcC--Ch---hh-
Confidence 68999999976554 88888999999999999999999999999 99999999765431 00 11
Q ss_pred cccccEEEEcCCCCCCCC--CCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCP--MPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..+|+++.|++|+++++ ...|+++.++ ++.+.+.....++ ++. ..++..|..++.+ +.+..+++
T Consensus 175 -~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~--------g~~--~~p~~a~~~l~~l--~tl~~r~~ 241 (369)
T cd00614 175 -LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLAL--------GTI--LSPFDAWLLLRGL--KTLPLRME 241 (369)
T ss_pred -hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhh--------CCC--CCHHHHHHHHcCC--CCHHHHHH
Confidence 24899999999999865 3478888877 5555443222221 111 2245666655544 66778899
Q ss_pred HHHHHHHHHHHHHHhcCCe-EeecC-----------------CeeEEEEecCCc----HHHhhceeecc-----------
Q 011842 372 KCLRNAHYLKDRLLDAGIS-AMLNE-----------------LSSTVVFERPQD----EEFVRRWQLAC----------- 418 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~-~~~~~-----------------~~~iv~f~~~~~----~~~~~~~~l~~----------- 418 (476)
+..++++++.+.|++.+.. .+..| .+++++|...++ ..+.+.+.+..
T Consensus 242 ~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl 321 (369)
T cd00614 242 RHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESL 321 (369)
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCcee
Confidence 9999999999999998632 22222 257888887522 23333333210
Q ss_pred ----------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 ----------------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 ----------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
..+.+|+++.- ||+|.++++|+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 322 VEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred eeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 02468888764 78888888887764
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=184.86 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=191.7
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D 220 (476)
.++++++++.+|++++ ++++|+|+++++...+.+... ++ +.|+++.++|..+...++..|++++.+|.++++.+|
T Consensus 60 ~~l~~~~a~~~g~~~~--~I~~~~Gs~e~i~~~~~~~~~--~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d 135 (351)
T PRK01688 60 KAVIENYAAYAGVKPE--QVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLD 135 (351)
T ss_pred HHHHHHHHHHhCCCHH--HEEEcCCHHHHHHHHHHHhcC--CCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCC
Confidence 3667778888999764 599999999999888877654 65 899999999999999999999999999998788999
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
++.|++++ ++++ +|++++++|+||.+.+.++|.++++.. +. ++++|++|.-+... ......+.... -
T Consensus 136 ~~~l~~~~-~~~~---lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~-----~vivDEay~~f~~~-~s~~~~~~~~~-n 204 (351)
T PRK01688 136 LPAIADNL-DGVK---VVYVCSPNNPTGNLINPQDLRTLLELTRGKA-----IVVADEAYIEFCPQ-ASLAGWLAEYP-H 204 (351)
T ss_pred HHHHHHhc-cCCc---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEECchhhcCCC-CChHHHHhhCC-C
Confidence 99999987 4444 778889999999999888877777643 46 89999999654321 00000011011 1
Q ss_pred cEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhC---hhcHHHHHHHH
Q 011842 299 GSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKG---YKGFQKEVQKC 373 (476)
Q Consensus 299 Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~~g~~~~~~~~ 373 (476)
-++.-|++|+++ +++++|++++++++++.+.... .| ..+ .+.+.++...+. .+-+++.++..
T Consensus 205 ~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~--------~v~-----~~~~~~a~~~L~~~~~~~~~~~~~~~ 271 (351)
T PRK01688 205 LVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY--------PLS-----TPVADIAAQALSPQGIAAMRERVAEI 271 (351)
T ss_pred EEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC--------CCC-----HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 256678899776 7899999999888776654321 11 111 122222333332 23456667777
Q ss_pred HHHHHHHHHHHHhcCCe-EeecCCeeEEEEecCCcHHHh-----hceeec-c-----cCCEEEEEEcCCCCHHHHHHHHH
Q 011842 374 LRNAHYLKDRLLDAGIS-AMLNELSSTVVFERPQDEEFV-----RRWQLA-C-----QGNIAHVVVMPNVTIDKLDDFLN 441 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~-~~~~~~~~iv~f~~~~~~~~~-----~~~~l~-~-----~~~~lRv~~~~~~T~edid~~~~ 441 (476)
.+.++++.+.|++.+.. .+.++.++.+.+..++..++. +++.+. + ..+++|+++. |.+++++|++
T Consensus 272 ~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~ 348 (351)
T PRK01688 272 NANRQWLIAALKEIPCVEQVFDSETNYILARFTASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVID 348 (351)
T ss_pred HHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHH
Confidence 78889999999987533 355667777777766443332 233332 1 1368999986 7899999999
Q ss_pred HHH
Q 011842 442 ELI 444 (476)
Q Consensus 442 ~l~ 444 (476)
+|+
T Consensus 349 al~ 351 (351)
T PRK01688 349 ALR 351 (351)
T ss_pred hhC
Confidence 873
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-19 Score=178.41 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEec---CCCchHHHHHHHHcCCeEEEEeCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYAS---RESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s---~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
.++++++.+++++++|.+++ ..++++||++||..++.+... |++.|++. .+.|.++...+++.|++++.+ +
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e--~ilv~~gg~~a~~~~~~al~~--~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~--~ 126 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEE--KILVFNRTSSAILATILALEP--PGRKVVHYLPEKPAHPSIPRSCKLAGAEYFES--D 126 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcc--eEEEECCHHHHHHHHHHHhCC--CCCEEEECCCCCCCchhHHHHHHHcCCEEecc--C
Confidence 48999999999999999654 399999999999999988776 89988853 679999999999999976432 2
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
|+++|+. . ++ +.+|++ .+++++|.+ .||++|+++|++||+ |+++|+||+.++.......+.
T Consensus 127 -----~l~~l~~-~-~~---~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~-----~livDEAy~~~~~~~~~~~~~ 190 (346)
T TIGR03576 127 -----ELSELKK-I-DG---TSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEA-----IVLVDDASGARVRRLYGQPPA 190 (346)
T ss_pred -----CHHHHhh-C-cC---ceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCC-----EEEEECCccccccccCCCCCH
Confidence 4555432 1 22 335555 468999998 799999999999999 999999998654321111111
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.. ..+|+++.+++|++. +++.|+++.++++++.+.... .|. .+. .+..+++++..+.....+...
T Consensus 191 ~~--~~~divv~s~SKala-G~r~G~v~~~~~li~~l~~~~~~~~--------~s~---~~~~~~aa~~aL~~~~~~~~~ 256 (346)
T TIGR03576 191 LD--LGADLVVTSTDKLMD-GPRGGLLAGRKELVDKIKSVGEQFG--------LEA---QAPLLAAVVRALEEFELSRIR 256 (346)
T ss_pred HH--cCCcEEEeccchhcc-ccceEEEEeCHHHHHHHHHhhcCcc--------cCc---cHHHHHHHHHHHhhccHHHHH
Confidence 11 126888899999764 577999999988776664322 222 111 123444444444222234556
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh----h--ceee-cc-----cCCEEEEEEcCCC-CHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV----R--RWQL-AC-----QGNIAHVVVMPNV-TIDK 435 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~----~--~~~l-~~-----~~~~lRv~~~~~~-T~ed 435 (476)
+.+.++++++.+.++..+ +.++..+.+++..+. +.++. + +..+ +. ..+++|+++.... ++.+
T Consensus 257 ~~l~~r~~~~~~~l~~~~---~~~~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~ 333 (346)
T TIGR03576 257 DAFKRKEEVYLRLFDKLN---VERTPTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIG 333 (346)
T ss_pred HHHHHHHHHHHHHHHhCC---CCcCCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcC
Confidence 677777777777777433 223456666666643 22222 1 2222 21 1468999886322 3448
Q ss_pred HHHHHHHHHHH
Q 011842 436 LDDFLNELIEN 446 (476)
Q Consensus 436 id~~~~~l~~~ 446 (476)
+++|+++|++.
T Consensus 334 ~~~~~~al~~~ 344 (346)
T TIGR03576 334 DDYLVEAVKDS 344 (346)
T ss_pred HHHHHHHHHhc
Confidence 99999999764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-18 Score=176.34 Aligned_cols=292 Identities=13% Similarity=0.119 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+ .|...+...+++|+|+++|+..++.+... ||+.|+++++.|..+...++..|++++.++.+.
T Consensus 67 g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~ 143 (397)
T PRK07568 67 GIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMMAICD--PGDEILVPEPFYANYNGFATSAGVKIVPVTTKI 143 (397)
T ss_pred CCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHHHHHHHHhcC--CCCEEEEecCCCccHHHHHHHcCCEEEEeecCc
Confidence 456888888888763 45543344699999999999988877654 899999999988888888889999999999863
Q ss_pred -CC-c-cCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 216 -SG-E-IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 -~g-~-~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+| . .|++.|++++.++++ +|++++++|+||.+- ++++|+++|+++|+ ++++|++|+.+.+......
T Consensus 144 ~~g~~~~~~~~l~~~~~~~~~---~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~-----~ii~De~y~~~~~~~~~~~ 215 (397)
T PRK07568 144 EEGFHLPSKEEIEKLITPKTK---AILISNPGNPTGVVYTKEELEMLAEIAKKHDL-----FLISDEVYREFVYDGLKYT 215 (397)
T ss_pred ccCCCCCCHHHHHHhcCccce---EEEEECCCCCCCccCCHHHHHHHHHHHHHCCc-----EEEEeccchhcccCCCCcc
Confidence 33 2 367999998876554 777888999999986 48899999999999 9999999987654322122
Q ss_pred CCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 290 PKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 290 ~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
+...+.. .-.++..|++|.++ .++++|++++++ ++++.+...... .+ +.+ .+.+.++...+ +.
T Consensus 216 s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~------~~--~~s---~~~q~~~~~~l~~~~ 284 (397)
T PRK07568 216 SALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQA------RL--SPP---TLEQIGAAALLDTPE 284 (397)
T ss_pred ChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhhc------cC--CCC---cHHHHHHHHHhhCCH
Confidence 2222211 11256678899876 689999999864 455443211110 01 111 23333333333 23
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCC--cHHHhh-----------ceeecc----------c
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQ--DEEFVR-----------RWQLAC----------Q 419 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~--~~~~~~-----------~~~l~~----------~ 419 (476)
..+++..+...++++.+.+.|++.+...+..|.. ..+.++.+. ..++.+ ++.+.. .
T Consensus 285 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~ 364 (397)
T PRK07568 285 SYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLG 364 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCC
Confidence 4466677778888999999998874333344444 444555543 233321 232211 1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+.+|+++. .+.++++..++.|.+..++..
T Consensus 365 ~~~iRls~~--~~~~~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 365 KNEIRIAYV--LNEEDLKRAMEILKEALEKYN 394 (397)
T ss_pred CCeEEEEEe--CCHHHHHHHHHHHHHHHHHhh
Confidence 258999986 467999999999998887655
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-19 Score=177.55 Aligned_cols=274 Identities=12% Similarity=0.040 Sum_probs=183.3
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC--CccC
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS--GEID 220 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~--g~~D 220 (476)
.+++.++++++++++ ++++|+|+++++..++.+. . ++++ ++..+.+..+...++..|++++.+|++++ ..+|
T Consensus 59 ~lr~~ia~~~~~~~~--~i~it~Ga~~~l~~~~~~l-~--~g~v-iv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 132 (356)
T PRK08056 59 HLHQALARHHQVPAS--WILAGNGETESIFAVVSGL-K--PRRA-MIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT 132 (356)
T ss_pred HHHHHHHHHhCcChh--hEEECCCHHHHHHHHHHHh-C--CCCE-EEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc
Confidence 444556666788754 5999999999988877764 3 6664 55578888888899999999999998643 3455
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
+++++.+.++++ +|++++++|+||.+-+ +++|+++|++|++ ++++|++|..+........+.+... .
T Consensus 133 -~~~~~~~~~~~k---~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~~~~~~-~ 202 (356)
T PRK08056 133 -DAILEALTPDLD---CLFLCTPNNPTGLLPERQLLQAIAERCKSLNI-----ALILDEAFIDFIPDETGFIPQLADN-P 202 (356)
T ss_pred -HHHHHhccCCCC---EEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCC-----EEEEecchhccCCcchHHHHHhccC-C
Confidence 355555654444 7778899999999988 8889999999999 9999999976543221111112111 2
Q ss_pred ccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~ 374 (476)
.++++.|++|+++ +++++|++++++ +.++.+...... .+ ...+.+.++...+.. .-.++..++..
T Consensus 203 ~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~~~---------~~---~~~~~~~~a~~~l~~~~~~~~~~~~~~ 270 (356)
T PRK08056 203 HLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQMP---------WS---INAFAALAGEVILQDRAYQQATWQWLA 270 (356)
T ss_pred CEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC---------Cc---hhHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4577899999998 889999999854 454444321110 01 112344444444422 22455567778
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHhh-----ceeec-c------cCCEEEEEEcCCCCHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFVR-----RWQLA-C------QGNIAHVVVMPNVTIDKLDDFLN 441 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~~-----~~~l~-~------~~~~lRv~~~~~~T~edid~~~~ 441 (476)
++++++.+.|++.+...+.++.++.+.+..+. ..++.+ ++.+. . ..+++|+++. +.++.++|++
T Consensus 271 ~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~ 347 (356)
T PRK08056 271 EEGARFYQALCALPLLTVWPGRANYLFLRCERPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR---SAAENERLLA 347 (356)
T ss_pred HHHHHHHHHHhcCCCcEEcCCCCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHHH
Confidence 88899999998874334455667777666653 233322 23321 1 1358999985 7899999999
Q ss_pred HHHHHH
Q 011842 442 ELIENR 447 (476)
Q Consensus 442 ~l~~~~ 447 (476)
+|+++.
T Consensus 348 ~l~~~~ 353 (356)
T PRK08056 348 ALRNVL 353 (356)
T ss_pred HHHHHH
Confidence 998653
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=180.14 Aligned_cols=286 Identities=12% Similarity=0.009 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEc-CCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHHc--CCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYIT-NCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARMY--RMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t-~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~~--G~~v~~v 211 (476)
...++.+++++.+++++|.++ ++..+|+ ++||.++..++..... + +.++++.-.|.+ +.+.+.+. ..++..+
T Consensus 38 ~f~~~~~~~r~~l~~l~~~~~-~~~v~f~~gs~T~a~~~~~~~l~~--~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 38 PVKNLVGRVREGLAELFSLPD-GYEVILGNGGATAFWDAATFGLIE--K-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CceEEEECCchhHHHHHHHHhccc--c-cccEEecCHHHHHHHHHHHhhhccCCceEE
Confidence 567888999999999999964 3457776 5589998888776542 2 233333334433 33444442 2367777
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+....++. .+.+++ .+|++++.+|.+|.+.|+++| ++++|+ +++||++++.+..+
T Consensus 114 ~~~~~~~~~~-----~~~~~~---~lV~~~h~et~tG~~~pi~~I---~~~~g~-----~~iVDavqs~g~~~------- 170 (361)
T TIGR01366 114 TADPGSAPEP-----QADPGV---DVIAWAHNETSTGVAVPVRRP---EGSDDA-----LVVIDATSGAGGLP------- 170 (361)
T ss_pred ecCCCCCCCC-----ccCCCC---CEEEEcccCCccceecccccc---cccCCC-----eEEEEcCccccCCC-------
Confidence 7654443443 233344 489999999999999999988 588999 99999999887776
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-------ccccCCC-------CCcccCCCCChhHHHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-------VEYLASR-------DATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-------~~yl~~~-------~~~~~~sr~~~~~l~~~~~ 357 (476)
+++.+ +|++++++||+++.|.+.++++++++.++.+... +.|+.-. .....++.+....+++..+
T Consensus 171 idv~~-~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~a 249 (361)
T TIGR01366 171 VDIAE-TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQ 249 (361)
T ss_pred CCHHH-CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHH
Confidence 55544 8999999999999888888888898866444210 1232110 0111234433334467778
Q ss_pred HHHhChh-cHHHHHHHHHHHHHHHHHHHHhcCCeE-eec-C--Ce---eEEEEecC-CcHHHh-----hceeecc-----
Q 011842 358 LNRKGYK-GFQKEVQKCLRNAHYLKDRLLDAGISA-MLN-E--LS---STVVFERP-QDEEFV-----RRWQLAC----- 418 (476)
Q Consensus 358 l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~-~~~-~--~~---~iv~f~~~-~~~~~~-----~~~~l~~----- 418 (476)
++++... |++.+.++..++++++++.|++.+... +.. + .+ .++.|..+ +..++. +++.+..
T Consensus 250 l~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l 329 (361)
T TIGR01366 250 IDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKL 329 (361)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCcccc
Confidence 8888666 699999999999999999999998533 322 1 12 34555321 122221 2222211
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
....+|++++.++|.+||++|+++|+++.++
T Consensus 330 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 330 GRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 2357999999999999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=181.86 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=195.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+-.|.+.+.. ..++++|+++++..++.+.. ..+++.|+++++.|..+...++..|++++.+|++
T Consensus 45 g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~ 123 (363)
T PF00155_consen 45 GYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLD 123 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEE
T ss_pred hhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc-ccccccceecCCccccccccccccCceeeecccc
Confidence 456899998888886667665444 56666555555555444442 2388999999999999999999999999999965
Q ss_pred --CCCccCHHHHHHHHHcCC-C--CcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 215 --ISGEIDCADFKAKLLQNK-D--KPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 215 --~~g~~D~~~Le~~l~~~~-~--~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
.++.+|+++|++.+++.. + ++.+|+++.+.++||..-+ +++|+++|++||+ ++++|++|+.+.....
T Consensus 124 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~-----~ii~De~y~~~~~~~~ 198 (363)
T PF00155_consen 124 SENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNI-----IIIVDEAYSDLIFGDP 198 (363)
T ss_dssp ETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTS-----EEEEEETTTTGBSSSS
T ss_pred ccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhccccc-----ceeeeeceeccccCCC
Confidence 578999999999998741 1 2457888899999999865 5555566999999 9999999987765422
Q ss_pred ccCC-CCCCcccc-cEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-
Q 011842 287 KKAP-KVSFKKPI-GSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG- 362 (476)
Q Consensus 287 ~~~~-~~~~~~~~-Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g- 362 (476)
...+ ........ .+++.|+.|.++ .++++|++++++++++.+....... .. +......+...+...+
T Consensus 199 ~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~-------~~--~~~~~~~~~~~l~~~~~ 269 (363)
T PF00155_consen 199 DFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSG-------LS--SSPMQAAAAAALSDPEL 269 (363)
T ss_dssp HTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHT-------TS--SHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccccc-------cc--cchhhHHHHHhhhcccc
Confidence 1100 01111222 477888999775 5689999999877766553221111 11 1111111222222222
Q ss_pred -hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHH----hh--ceeecc-----cCCEEEEEE
Q 011842 363 -YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEF----VR--RWQLAC-----QGNIAHVVV 427 (476)
Q Consensus 363 -~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~----~~--~~~l~~-----~~~~lRv~~ 427 (476)
.+.+++..+++.++++++.+.|++.++....++ +++++|...+. .++ .+ ++.+.. ..+++|+++
T Consensus 270 ~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~ 348 (363)
T PF00155_consen 270 VEKWLEELRERLRENRDLLREALEEIGITVLPPE-AGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL 348 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHS-BSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG
T ss_pred cccccccchhhHHHHHHHHHHHHHHhhhheeecc-CccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe
Confidence 125677888899999999999999887655444 55555543332 222 22 333321 257899999
Q ss_pred cCCCCHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNEL 443 (476)
Q Consensus 428 ~~~~T~edid~~~~~l 443 (476)
...+++++++++++|
T Consensus 349 -a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 349 -ASHSEEDLEEALERL 363 (363)
T ss_dssp -GCSCHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHhhC
Confidence 899999999999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=173.76 Aligned_cols=289 Identities=10% Similarity=-0.031 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHHHHHHc--CCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLW--ELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~--g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
+..++++++++|+.+.. |++.+..++++|+|+++++..++.+... +++ .|++..++|..+...++.+|++++.++
T Consensus 67 G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~--~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 144 (374)
T PRK02610 67 GHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCL--GGEGSILVAEPTFSMYGILAQTLGIPVVRVG 144 (374)
T ss_pred chHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 34588888888887764 3333334699999999999877666544 554 899999999999999999999999999
Q ss_pred CCC-CCccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccCHHHHHHHHHH-hCCCCCceEEEEecCcccccccccccC
Q 011842 213 CLI-SGEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 213 ~~~-~g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~-~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+++ ++.+|+++|++++.+. ..++.+|+++++.|+||.+-+.+++.++++- +++ ||++|++|..+.... ..
T Consensus 145 ~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~-----~iI~De~Y~~~~~~~--~~ 217 (374)
T PRK02610 145 RDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDI-----LVVIDEAYFEFSQTT--LV 217 (374)
T ss_pred CCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCc-----EEEEeccccccCccc--hH
Confidence 875 4789999999998741 1234478788899999999887776666542 477 999999997543210 00
Q ss_pred CCCCCcccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQ 367 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~ 367 (476)
+.+..... -++..|+.|.+ ++++++|+++.++++++.+....... +. ..+.+.++...+.. +.+.
T Consensus 218 ~~~~~~~~-~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~~~---------~~---~~~~q~a~~~~l~~~~~~~ 284 (374)
T PRK02610 218 GELAQHPN-WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPY---------NL---PSFSQLAAQLALEHRQELL 284 (374)
T ss_pred HHHhcCCC-EEEEEecchhccCcccceeeeecCHHHHHHHHHhcCCC---------CC---CHHHHHHHHHHhcCHHHHH
Confidence 11111111 24567889988 68999999999888776653322110 01 12344444444432 2334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHhh-----ceeecccCCEEEEEEcCCCCHHHHHHH
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFVR-----RWQLACQGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~~-----~~~l~~~~~~lRv~~~~~~T~edid~~ 439 (476)
+.+++..+.++.+.+.|++.+.....++.++.+.++.+. ..++.+ +..+....+.+|+++. +.++++++
T Consensus 285 ~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~~~~~lRls~~---~~~~~~~~ 361 (374)
T PRK02610 285 AAIPEILQERDRLYQALQELPQLRVWPSAANFLYLRLSQDAALAALHQALKAQGTLVRHTGGGLRITIG---TPEENQRT 361 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEeCCCcceEEEEeCCCCCCHHHHHHHHHHCCEEEEeCCCeEEEeCC---CHHHHHHH
Confidence 444555556777888887763333445566666666553 233322 3334334578999875 36788999
Q ss_pred HHHHHHHHHH
Q 011842 440 LNELIENRST 449 (476)
Q Consensus 440 ~~~l~~~~~~ 449 (476)
++.|+++.+.
T Consensus 362 l~~l~~~l~~ 371 (374)
T PRK02610 362 LERLQAALTQ 371 (374)
T ss_pred HHHHHHHHhh
Confidence 9999877653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=180.26 Aligned_cols=294 Identities=9% Similarity=0.050 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHHHHHcC--CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH-HcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWE--LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g--~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~-~~G~~v~~v~ 212 (476)
+..++++++++|+.+..| .+.++.++++|+|+++|+...+.+..+ ||+.|+++.+.|..+...++ ..|++++.||
T Consensus 95 G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~--pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~ 172 (496)
T PLN02376 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD--PGDVFLIPSPYYAAFDRDLRWRTGVEIIPVP 172 (496)
T ss_pred CcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC--CCCEEEECCCCccchHHHHHhhCCCEEEEEe
Confidence 567999999999999877 333334699999999999998888876 99999999999999988777 4899999999
Q ss_pred CC--CCCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CL--ISGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~--~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
++ +++.+|++.|++++.. .+.++.+|++++|+|+||.+-+ +++|+++|++|++ +|++|++|+...+.
T Consensus 173 ~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i-----~lI~DEiY~~~~f~ 247 (496)
T PLN02376 173 CSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNI-----HLVVDEIYAATVFA 247 (496)
T ss_pred CCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEcCccccccC
Confidence 95 3568999999887542 2234557778899999999966 6778899999999 99999999876543
Q ss_pred ccccCCCCCCcc-------ccc--EEEEcCCCCCC-CCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 285 FVKKAPKVSFKK-------PIG--SVSVSGHKFVG-CPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 285 ~~~~~~~~~~~~-------~~D--si~~s~hK~l~-~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
.....+...... ..+ .+..+++|.++ .++++|+++..++ +.+.+.....+. . ...+.
T Consensus 248 ~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~---------~---vs~~~ 315 (496)
T PLN02376 248 GGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFG---------L---VSSQT 315 (496)
T ss_pred CCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcC---------C---CCHHH
Confidence 222211111100 012 34578999885 7899999999655 333322111110 0 11344
Q ss_pred HHHHHHHhChhcH-----HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---c-------HHH----hh--
Q 011842 354 LWYTLNRKGYKGF-----QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---D-------EEF----VR-- 412 (476)
Q Consensus 354 ~~~~l~~~g~~g~-----~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~-------~~~----~~-- 412 (476)
++++...+....+ ++..+++.++.+.+.+.|++.|+....+.....+.+..+. + .++ .+
T Consensus 316 Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~ 395 (496)
T PLN02376 316 QLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKV 395 (496)
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcC
Confidence 4444444433222 3335566777888889998887654444344555555432 1 112 11
Q ss_pred ceeecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 413 RWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 ~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+..+.. ..+++|+++.. .+.+.++..++.|.+...+
T Consensus 396 gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 396 KLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred CEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHHH
Confidence 333321 24689999863 4568888888888887754
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=178.40 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
...+++++.+++++|.+. .++|+||+.|+..++.+... +|+.|+++...|.+.. ..++.+|++++.++.+
T Consensus 61 p~~~~le~~la~l~g~~~----~v~~ssG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 61 PTVTMFQERLAALEGAEA----CVATASGMAAILAVVMALLQ--AGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred hHHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 334556777888898763 78999999999998887755 8999999998886543 4566789999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|++++++++.++++ +|+++++++++|.+.|+++|+++|++||+ ++++|++|+..... .+ +
T Consensus 135 -----d~~~l~~~i~~~tk---lV~ie~p~NptG~v~dl~~I~~la~~~gi-----~livD~t~~~~~~~----~p-l-- 194 (390)
T PRK08133 135 -----DLDAWRAAVRPNTK---LFFLETPSNPLTELADIAALAEIAHAAGA-----LLVVDNCFCTPALQ----QP-L-- 194 (390)
T ss_pred -----CHHHHHHhcCcCCe---EEEEECCCCCCCCcCCHHHHHHHHHHcCC-----EEEEECCCcccccC----Cc-h--
Confidence 89999999977665 88888999999999999999999999999 99999998654331 11 1
Q ss_pred cccccEEEEcCCCCCCCCC-Cc-eeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPM-PC-GVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~-~~-G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
..++|+++.|++|+++++. .. |+++.+++.++.+.. ++.. .+.. ..++.+|..++ |.+.+..++++
T Consensus 195 ~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~---~~~~-----~g~~--~~~~~a~~~l~--gl~tl~~R~~~ 262 (390)
T PRK08133 195 KLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG---FLRT-----AGPT--LSPFNAWVFLK--GLETLSLRMEA 262 (390)
T ss_pred hhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH---HHHH-----hCCC--CCHHHHHHHHc--ccchHHHHHHH
Confidence 1237999999999997543 34 666666665443321 1110 1111 22455555543 45678889999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 011842 373 CLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~ 389 (476)
..+++..+.+.|++.+.
T Consensus 263 ~~~~a~~la~~L~~~p~ 279 (390)
T PRK08133 263 HSANALALAEWLEAHPG 279 (390)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998753
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=177.10 Aligned_cols=265 Identities=15% Similarity=0.172 Sum_probs=182.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g 217 (476)
.++.+.+++++|.+. .+++++|+.|+..++.+... ||+.|+++.+.|.+..... ...|+++..++..
T Consensus 64 ~~Le~~lA~l~G~~~----al~~~sG~~Ai~~~l~al~~--~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~--- 134 (386)
T PRK06767 64 KLFEERMAVLEGGEE----ALAFGSGMAAISATLIGFLK--AGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDME--- 134 (386)
T ss_pred HHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCC---
Confidence 344555788888653 78888889888887777654 9999999999887654433 3346666666543
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|++++++++.++++ +|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.+... .....+
T Consensus 135 --d~~~l~~~i~~~tk---lV~lesp~NptG~v~dl~~I~~la~~~g~-----~vivD~a~a~~~~~-------~pl~~g 197 (386)
T PRK06767 135 --TEADIENKIRPNTK---LIFVETPINPTMKLIDLKQVIRVAKRNGL-----LVIVDNTFCSPYLQ-------RPLELG 197 (386)
T ss_pred --CHHHHHHhhCcCce---EEEEeCCCCCCceecCHHHHHHHHHHcCC-----EEEEECCCcccccC-------CchhcC
Confidence 88999999977665 88889999999999999999999999999 99999999744332 111234
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+++.|++|+++++.. .|+++.+++.+..+... ...+ ++. ..++.+|+.+. +.+.+..++++..
T Consensus 198 ~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~--------g~~--~~~~~a~l~~~--~L~tl~~r~~~~~ 265 (386)
T PRK06767 198 CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDI--------GGI--MAPFDAWLLLR--GLKTLAVRMDRHC 265 (386)
T ss_pred CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHh--------CCC--CCHHHHHHHHc--CCCcHHHHHHHHH
Confidence 89999999999986543 58888888765443211 1111 111 12455565544 3456778889999
Q ss_pred HHHHHHHHHHHhcCC-eEeecC-----------CeeEEEEecCCc----HHHhhceee----------------cc----
Q 011842 375 RNAHYLKDRLLDAGI-SAMLNE-----------LSSTVVFERPQD----EEFVRRWQL----------------AC---- 418 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~-~~~~~~-----------~~~iv~f~~~~~----~~~~~~~~l----------------~~---- 418 (476)
++++++.+.|++.+. ..+..| ..++++|...++ ..|.+.+.+ +.
T Consensus 266 ~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~ 345 (386)
T PRK06767 266 DNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTH 345 (386)
T ss_pred HHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCcccc
Confidence 999999999999854 333322 246888887532 234433321 00
Q ss_pred -------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 -------------QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 -------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|+++. -||+|.++++|+++.+
T Consensus 346 ~~~~~~~~~~~gi~~~l~R~svG----lE~~~dl~~dl~~al~ 384 (386)
T PRK06767 346 AAIPAELRQEMGIYDNLIRLSVG----LESWEDIVSDLEQALK 384 (386)
T ss_pred ccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 0246888876 4667777777777654
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-18 Score=176.89 Aligned_cols=332 Identities=13% Similarity=0.035 Sum_probs=227.1
Q ss_pred CCCCcCCcchHHHHHHHHHhhCCCCCC-cccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH
Q 011842 101 GYPYNLDFDYGALAQLQHFSINNLGDP-FIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR 179 (476)
Q Consensus 101 g~p~~~~~~~~~l~~~l~~~~n~~g~~-~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~ 179 (476)
|.|....++.....+.+...+.+.... ...+....+..++++.+.+++....|+..++.++++|+|+++|+.+.+.+..
T Consensus 97 g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~ 176 (459)
T COG1167 97 GLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL 176 (459)
T ss_pred CCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC
Confidence 556666666667777766665544333 3344444578899999999999788888666689999999999998888877
Q ss_pred hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEe-eCCCccccccC---HHH
Q 011842 180 EVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVN-IGTTVKGAVDD---LDL 255 (476)
Q Consensus 180 ~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t-~gtt~tG~id~---l~~ 255 (476)
+ |||.|++.+++|+....+.+.+|++++.||+| +..||++.|++.+.... |.++.++ +..|+||..-+ -++
T Consensus 177 ~--pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d-~~G~~~e~le~~~~~~~--~k~~y~~P~~qNPtG~tms~~rR~~ 251 (459)
T COG1167 177 D--PGDTVLVEDPTYPGALQALEALGARVIPVPVD-EDGIDPEALEEALAQWK--PKAVYVTPTFQNPTGVTMSLERRKA 251 (459)
T ss_pred C--CCCEEEEcCCCcHHHHHHHHHcCCcEEecCCC-CCCCCHHHHHHHHhhcC--CcEEEECCCCCCCCCCccCHHHHHH
Confidence 6 99999999999999999999999999999998 56689999999998752 3344443 55888888865 569
Q ss_pred HHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccc
Q 011842 256 VIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEY 334 (476)
Q Consensus 256 I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~y 334 (476)
|+++|++||+ ||+.|..|+-+.+......+...... .--++..|+.|.+..+.++||++++.++++.+......
T Consensus 252 Ll~lA~~~~~-----~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~ 326 (459)
T COG1167 252 LLALAEKYDV-----LIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQA 326 (459)
T ss_pred HHHHHHHcCC-----eEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHH
Confidence 9999999999 99999999877664333322222222 23577889999999999999999999876655332222
Q ss_pred cCCCCCcccCCCCChhHHHHHHHHHHhC--hhcHHHHHHHHHHHHHHHHHHHHhcC--CeEeecCCeeE-EEEecCCc--
Q 011842 335 LASRDATIMGSRNGHAPIFLWYTLNRKG--YKGFQKEVQKCLRNAHYLKDRLLDAG--ISAMLNELSST-VVFERPQD-- 407 (476)
Q Consensus 335 l~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~i-v~f~~~~~-- 407 (476)
.. .+.+......+...+. -| .+.++++...+.+..+.+.+.|.+.. ...+..|...+ +.+..+..
T Consensus 327 ~~-------~~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~ 398 (459)
T COG1167 327 AD-------LGPSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGID 398 (459)
T ss_pred hc-------CCCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCC
Confidence 11 1111111122222222 22 22344455555668888888888864 33444455444 33445542
Q ss_pred -HHHh-----hceee-c--------c-cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 -EEFV-----RRWQL-A--------C-QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 -~~~~-----~~~~l-~--------~-~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.++. ++..+ + . ..+.+|++++. .+.++|+..+..|.++.++..
T Consensus 399 ~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 399 ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSS-PSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 2222 22222 1 1 23589988864 458999999999888877654
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=175.96 Aligned_cols=269 Identities=18% Similarity=0.198 Sum_probs=187.8
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g 217 (476)
..+.+.++++.|.+ .+++|+||++|+..++.+... +|+.|+++.+.|.+.... ....|++++.++.
T Consensus 56 ~~Le~~lA~leg~e----~ivvt~gg~~Ai~~~l~all~--~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~---- 125 (388)
T PRK08861 56 GLLEQTLSELESGK----GAVVTNCGTSALNLWVSALLG--PDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ---- 125 (388)
T ss_pred HHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC----
Confidence 34555577888854 389999999999999887755 999999999998764432 2334677777763
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.|++++++++.++++ +|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.+... .. ++ .+
T Consensus 126 -~d~e~l~~~i~~~tk---lV~lesP~NPtG~v~dl~~I~~la~~~gi-----~vIvDea~~~~~~~--~p---l~--~G 189 (388)
T PRK08861 126 -SDAAALDAALAKKPK---LILLETPSNPLVRVVDIAELCQKAKAVGA-----LVAVDNTFLTPVLQ--KP---LE--LG 189 (388)
T ss_pred -CCHHHHHHhcCcCCe---EEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCccccccC--CC---cc--cC
Confidence 389999999877665 88899999999999999999999999999 99999999765432 11 22 24
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+++.|+|||+++|.. .|+++.+++ +.+.+.....++ |.- ..+...|..+ .|.+.+.-++++..
T Consensus 190 aDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~--------G~~--~~p~~a~l~~--rgl~Tl~lR~~~~~ 257 (388)
T PRK08861 190 ADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCI--------GAT--GTPFDSYMTL--RGIRTLGARMRVHE 257 (388)
T ss_pred CCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhcc--------CCC--CChHHHHHHH--hcCCCHHHHHHHHH
Confidence 89999999999998765 677777654 333332111121 111 2245666444 46678899999999
Q ss_pred HHHHHHHHHHHhcCCeE-eecCC-----------------eeEEEEecCCc----HHHhhceeec---------------
Q 011842 375 RNAHYLKDRLLDAGISA-MLNEL-----------------SSTVVFERPQD----EEFVRRWQLA--------------- 417 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~-~~~~~-----------------~~iv~f~~~~~----~~~~~~~~l~--------------- 417 (476)
++|..+.+.|++.+... +..|. ..+++|...++ ..|.+.+.+.
T Consensus 258 ~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~ 337 (388)
T PRK08861 258 ESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICH 337 (388)
T ss_pred HHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeC
Confidence 99999999999987532 22221 24777876432 2343433320
Q ss_pred -c-----------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 418 -C-----------------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 418 -~-----------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
. ..+.+|+++. -||+|.++++|+++.+++.+
T Consensus 338 p~~~~h~~~~~~~~~~~gi~~~liRlsvG----lE~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 338 PASMTHRAMGEEALAEAGVSQQLLRLSVG----LEDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred CCcccccccCHHHHHhcCCCCCeEEEEeC----cCCHHHHHHHHHHHHHHHHh
Confidence 0 0246888876 46677777777777766554
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=178.88 Aligned_cols=220 Identities=15% Similarity=0.081 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-----HHcCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-----RMYRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-----~~~G~~v~~v~~ 213 (476)
...+++.+.++++.|.+. .++|+||++|+..++.+... +|+.|+++.+.|......+ +..|++++.++.
T Consensus 76 Pt~~~LE~~lA~l~g~~~----~l~~~sG~~Ai~~al~al~~--~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~ 149 (418)
T PLN02242 76 PTVLNLGRQMAALEGTEA----AYCTASGMSAISSVLLQLCS--SGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDI 149 (418)
T ss_pred hhHHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHhC--CCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCC
Confidence 445556667888898874 78999999999999988766 9999999999887665543 457888877765
Q ss_pred CCCCccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+ |+++|++++.++ ++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+.... .
T Consensus 150 ~-----d~e~l~~~i~~~~tk---lV~lesp~NPtG~v~dl~~I~~la~~~gi-----~livDea~~~~~~~~------~ 210 (418)
T PLN02242 150 T-----DLEAVKKAVVPGKTK---VLYFESISNPTLTVADIPELARIAHEKGV-----TVVVDNTFAPMVLSP------A 210 (418)
T ss_pred C-----CHHHHHHhcCcCCCE---EEEEecCCCCCCcccCHHHHHHHHHHhCC-----EEEEECCCCccCCCH------H
Confidence 4 899999999763 44 88899999999999999999999999999 999999996433210 1
Q ss_pred CCcccccEEEEcCCCCCCCCC-C-ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPM-P-CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~-~-~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
. ..+|+++.|++|+++++. . .|+++.++++++.+...... . ....|.. ...+.+.+...+...+..++
T Consensus 211 ~--~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~---~-~~~~g~~----~~~~~A~l~~~~l~tl~~r~ 280 (418)
T PLN02242 211 R--LGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHG---A-LMLLGPT----MNPKVAFELSERLPHLSLRM 280 (418)
T ss_pred H--cCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhh---h-hhccCCC----CCHHHHHHHHcCCCcHHHHH
Confidence 1 137999999999987543 3 58888777766554321111 0 0112222 12233334445566778888
Q ss_pred HHHHHHHHHHHHHHHhcCCeEee
Q 011842 371 QKCLRNAHYLKDRLLDAGISAML 393 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~ 393 (476)
++..++++++.+.|++.++.+..
T Consensus 281 ~~~~~~a~~la~~L~~~~~~V~y 303 (418)
T PLN02242 281 KEHCRRAMEYAKRMKELGLKVIY 303 (418)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEC
Confidence 99999999999999999865543
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-18 Score=174.23 Aligned_cols=292 Identities=15% Similarity=0.098 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..+||+++.+ ++|.+. +++|+|||.|+..++.+... ||++| ++.+.+.++...+.+.|++++.+++++
T Consensus 54 g~~~Leeaia~----~~g~~~----vv~t~~Gt~Al~la~~al~~--pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~ 122 (431)
T cd00617 54 SFYDLEDAVQD----LFGFKH----IIPTHQGRGAENILFSILLK--PGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDE 122 (431)
T ss_pred CHHHHHHHHHH----HHCCCe----EEEcCCHHHHHHHHHHHhCC--CCCEE-ccCCcccchHHHHHhCCCEeEEEeccc
Confidence 45577777554 556653 89999999999999888766 89987 466666677778889999999999863
Q ss_pred ----------CCccCHHHHHHHHHcCC-CCcEEEEEeeCCCcc-cccc---CHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 216 ----------SGEIDCADFKAKLLQNK-DKPAIINVNIGTTVK-GAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 216 ----------~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~t-G~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
.|.+|+++|+++|++++ +++.+|+++.++|++ |.+- ++++|.++|++||+ +||.|+|+..
T Consensus 123 ~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi-----~li~DaAr~~ 197 (431)
T cd00617 123 AHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGI-----PVVLDAARFA 197 (431)
T ss_pred ccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEchhhH
Confidence 25599999999998762 335578888888887 7764 57788999999999 9999999653
Q ss_pred c--cc-----cccccCCCCC----CcccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCC
Q 011842 281 L--MM-----PFVKKAPKVS----FKKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 281 ~--~~-----~~~~~~~~~~----~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
. ++ +.....+..+ .....|++++|+||-+++|. .|+++.+++ +.+.+.... +... .....++-++
T Consensus 198 ~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~~~~~~~~-~~~~-~~~~~gG~~~ 274 (431)
T cd00617 198 ENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELYEEARQRV-VLYE-GFVTYGGMAG 274 (431)
T ss_pred hhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHHHHHHHhc-cccC-CccccccccH
Confidence 2 11 1111111111 11248999999999888765 568888874 655543111 1000 0111111111
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----------cHHHh----hc
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----------DEEFV----RR 413 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----------~~~~~----~~ 413 (476)
....++..++... .+ .+.+++..+.+++|.+.|++.|+.+..|.+++.+++..+. +..+. .+
T Consensus 275 r~~~A~A~gL~e~-~~--~~~l~~~~~~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e 351 (431)
T cd00617 275 RDMEALAQGLREA-VE--EDYLRHRVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLE 351 (431)
T ss_pred HHHHHHHHHHHhc-cc--HHHHHHHHHHHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHH
Confidence 1111111122211 11 3556666778899999999999877766777777765431 22222 11
Q ss_pred eee-------------cc-------cCCEEEEEEcC-CCCHHHHHHHHHHHHHHHHH
Q 011842 414 WQL-------------AC-------QGNIAHVVVMP-NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 414 ~~l-------------~~-------~~~~lRv~~~~-~~T~edid~~~~~l~~~~~~ 449 (476)
-.+ +. .-..+|+.+.. ..|.+++|.+++.|..+.+.
T Consensus 352 ~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 352 AGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 111 01 12568987754 55999999999999988765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=161.29 Aligned_cols=348 Identities=16% Similarity=0.077 Sum_probs=231.0
Q ss_pred cHHHHHHHHHHHHhcccc-----cccCCCCcCCcc---hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHH
Q 011842 80 YMAGVLARYRKTLMERTK-----HHLGYPYNLDFD---YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARL 151 (476)
Q Consensus 80 ~~~~il~~~~~~~~~~~~-----~~~g~p~~~~~~---~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l 151 (476)
+...++..+......... ...|-|...+.. ..+..++..+....-+++|..+. +...-++++++++-+-
T Consensus 43 tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~---G~~~AR~AVAeYl~~~ 119 (447)
T KOG0259|consen 43 TIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSV---GILPARRAVAEYLNRD 119 (447)
T ss_pred cHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCcc---ccHHHHHHHHHHhhcC
Confidence 355666665554443331 133445433321 34444555555555555554333 6677888888887665
Q ss_pred cCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--CCCccCHHHHHHHHH
Q 011842 152 WELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--ISGEIDCADFKAKLL 229 (476)
Q Consensus 152 ~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--~~g~~D~~~Le~~l~ 229 (476)
+...-+..+.++|+|.++|+-+++.+..+ |+..|+++++++.-+...+...|++++++..- +++++|++.+|..++
T Consensus 120 l~~kl~a~DV~ltsGC~qAIe~~i~~LA~--p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D 197 (447)
T KOG0259|consen 120 LPNKLTADDVVLTSGCSQAIELAISSLAN--PGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD 197 (447)
T ss_pred CCCccCcCceEEeccchHHHHHHHHHhcC--CCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc
Confidence 55443345699999999999999988765 99999999999999999999999999999874 478999999999999
Q ss_pred cCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEc--
Q 011842 230 QNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVS-- 304 (476)
Q Consensus 230 ~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s-- 304 (476)
++|. .+++++|+|++|.+ +-|++|+++|+++++ .++.|++|+..++......+--.+...+=+|+..
T Consensus 198 ENT~---AivviNP~NPcGnVys~~HL~kiae~A~klgi-----~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggi 269 (447)
T KOG0259|consen 198 ENTV---AIVVINPNNPCGNVYSEDHLKKIAETAKKLGI-----MVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGI 269 (447)
T ss_pred cCee---EEEEeCCCCCCcccccHHHHHHHHHHHHHhCC-----eEEehhhcceeecCCCCccchhhccccCceEeeccc
Confidence 9985 77788999999988 569999999999999 9999999998877655554433444434444433
Q ss_pred CCCCCCCCCCceeEEeehhh--hhh---hcCCccccCCCCCcccCCCCChhHHHHHHHHHHh----ChhcHHHHHHHHHH
Q 011842 305 GHKFVGCPMPCGVQITRMEH--INV---LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK----GYKGFQKEVQKCLR 375 (476)
Q Consensus 305 ~hK~l~~p~~~G~l~~~~~~--~~~---l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~----g~~g~~~~~~~~~~ 375 (476)
++-|+-.+|+.||++..+.. .+. +..-..++.- . .+...+-| +++..+ -.+-|.....-+..
T Consensus 270 sKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~-----~---~~p~TiiQ-~AlP~IL~kTp~efF~k~~~~lk~ 340 (447)
T KOG0259|consen 270 SKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDI-----I---PGPATIIQ-GALPDILEKTPEEFFDKKLSFLKS 340 (447)
T ss_pred ccccccCCceeeeEEEecccccccchHHHHHHHHHHhc-----c---CCccHhHH-HHhHHHHHhChHHHHHHHHHHHHh
Confidence 45699999999999998752 110 0011112110 0 01112222 223222 23446677777888
Q ss_pred HHHHHHHHHHhcCCeE-eecCCeeEEEE-e--------cCCcHHHhhce----e---ecc----cCCEEEEEEcCCCCHH
Q 011842 376 NAHYLKDRLLDAGISA-MLNELSSTVVF-E--------RPQDEEFVRRW----Q---LAC----QGNIAHVVVMPNVTID 434 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~-~~~~~~~iv~f-~--------~~~~~~~~~~~----~---l~~----~~~~lRv~~~~~~T~e 434 (476)
+++...++|++.+-.. ...|.+.++.+ . +.++.+|..++ . ++. ..+++|+++. +..+
T Consensus 341 na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~--~~~~ 418 (447)
T KOG0259|consen 341 NADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVIT--VEEE 418 (447)
T ss_pred hHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEc--cChH
Confidence 9999999999986544 34455433333 2 12334454433 1 232 3589999885 5677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011842 435 KLDDFLNELIENRSTWY 451 (476)
Q Consensus 435 did~~~~~l~~~~~~~~ 451 (476)
.++..++.|++-..+=+
T Consensus 419 ~leea~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 419 MLEEAFSRIKEFCDRHS 435 (447)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888888888665544
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-18 Score=173.54 Aligned_cols=290 Identities=16% Similarity=0.118 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcC-----------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYR----------- 205 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G----------- 205 (476)
.+++.++.+.+++++|.+.+ .+++++||++|+..++.+++...+++.|++.+.. |.+........+
T Consensus 78 ~~~~~~l~~~l~~~~~~~~~--~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 155 (413)
T cd00610 78 NEPAVELAELLLALTPEGLD--KVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPL 155 (413)
T ss_pred CHHHHHHHHHHHHhCCCCCC--EEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCC
Confidence 37778888899999985433 4999999999999999998765466666666654 444444433332
Q ss_pred -CeEEEEeCCC------CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 206 -MECVKVDCLI------SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 206 -~~v~~v~~~~------~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
.+++.+|.++ +...|++.|++.+++..+++.+++++...+++|.+.| +++|.++|++||+ ++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~ 230 (413)
T cd00610 156 LPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGI-----LLIA 230 (413)
T ss_pred CCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 2466777652 2345899999999875444567777767888898877 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++... ..... .+... ..|.++++ |+++.++++|+++.++++++.+.. ..+.. ..++. .+......
T Consensus 231 Dev~~g~g~~-g~~~~-~~~~~~~~d~~t~s--K~l~~g~~~g~~~~~~~~~~~~~~-~~~~~--~~t~~--~~~~~~~a 301 (413)
T cd00610 231 DEVQTGFGRT-GKMFA-FEHFGVEPDIVTLG--KGLGGGLPLGAVLGREEIMDAFPA-GPGLH--GGTFG--GNPLACAA 301 (413)
T ss_pred eccccCCCcC-cchhh-HhhcCCCCCeEEEc--ccccCccccEEEEEcHHHHHhhcc-CCCCC--CCCCC--cCHHHHHH
Confidence 9999864211 11100 11111 25766554 999888999999998877766510 11110 01111 11122233
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC----eEeecCCeeEEEEecCCc-----------HHHh-----hc
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI----SAMLNELSSTVVFERPQD-----------EEFV-----RR 413 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~----~~~~~~~~~iv~f~~~~~-----------~~~~-----~~ 413 (476)
..++++.+.. .+..++..++.+++++.|++... .........++.+..+++ ..+. ++
T Consensus 302 ~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 378 (413)
T cd00610 302 ALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERG 378 (413)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCC
Confidence 3344544432 35667778888889888887532 211223345555554321 1121 22
Q ss_pred eeecc-cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 414 WQLAC-QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 414 ~~l~~-~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.+.. .++.+|++++..+|+++|++++++|+++
T Consensus 379 v~v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 379 LLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred eEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 33322 2578999999999999999999999765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=177.05 Aligned_cols=300 Identities=11% Similarity=0.015 Sum_probs=189.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEE--EcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGY--ITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~--~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
.|..++++++.+|+.+..+...++.+++ .|.|+++|...++.+.+. ..||+.|++.+++|..+...++.+|++++.+
T Consensus 72 ~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v 151 (404)
T PTZ00376 72 EGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEY 151 (404)
T ss_pred CCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeec
Confidence 3567999999999866544321223465 489999998877654321 1389999999999999999999999999999
Q ss_pred eCC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 212 DCL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 212 ~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
|+. +++.+|++.+++++.+.+.+..+++++++.|+||.+- .+++|+++|++|++ ||++|++|..+.+...
T Consensus 152 ~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~~~~~~~ 226 (404)
T PTZ00376 152 RYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNL-----IPFFDMAYQGFASGDL 226 (404)
T ss_pred cccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-----EEEEehhhcCccCCCH
Confidence 983 3478999999999975422234777789999999984 47788899999999 9999999987655321
Q ss_pred --ccCCCCCCcc-c-ccEEEEcCCCCCC-CCCCceeEE---eehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHH
Q 011842 287 --KKAPKVSFKK-P-IGSVSVSGHKFVG-CPMPCGVQI---TRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 287 --~~~~~~~~~~-~-~Dsi~~s~hK~l~-~p~~~G~l~---~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
.+.+...... . --++..|+.|.++ +++++||++ .++++++.+.... .+... . ..+ ...+.++++
T Consensus 227 ~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~---~-~~~---~~~~~q~~~ 299 (404)
T PTZ00376 227 DKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRP---M-YSS---PPIHGARIA 299 (404)
T ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhh---h-cCC---CchHHHHHH
Confidence 1100011111 1 1255577889887 889999984 4444333221110 01000 0 111 113444555
Q ss_pred HHHhChh--------cHHHHHHHHHHHHHHHHHHHHhcCCe---EeecCCeeEEEE-ecCCc--HHHhhceeecccCCEE
Q 011842 358 LNRKGYK--------GFQKEVQKCLRNAHYLKDRLLDAGIS---AMLNELSSTVVF-ERPQD--EEFVRRWQLACQGNIA 423 (476)
Q Consensus 358 l~~~g~~--------g~~~~~~~~~~~a~~l~~~L~~~g~~---~~~~~~~~iv~f-~~~~~--~~~~~~~~l~~~~~~l 423 (476)
...+... .+++..+++.++++.+.+.|++.+.. ....+......| ..+.. ..+.++..+..-.+.
T Consensus 300 ~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~~~~~L~~~~~v~v~p~~- 378 (404)
T PTZ00376 300 DRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLTKEQVERLIEKYHIYLLDNG- 378 (404)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCCHHHHHHHHHhCCEeecCCC-
Confidence 4444221 13444567778899999999987532 222344444433 33221 122222222111112
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|+++.. .+.++++.++++|++...
T Consensus 379 Ris~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 RISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred eEEEec-cCHHhHHHHHHHHHHHHh
Confidence 998854 899999999999987753
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-18 Score=174.08 Aligned_cols=297 Identities=12% Similarity=0.067 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCccc-EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc---hHHH------HHHHHcCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYW-GYITNCGTEGNLHGILVGREVFPDGILYASRESH---YSVF------KAARMYRM 206 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~-g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H---~S~~------~~~~~~G~ 206 (476)
..++|..+.+...++||++..+.+ -+-.-+|+.||+.++.+... |+|.|+..+..| .+.. +.+...|.
T Consensus 192 iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~--PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~ 269 (586)
T PLN02271 192 IDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLL--PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASI 269 (586)
T ss_pred HHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcC--CCCEEEEecCCCCCchhcccccccccccccccc
Confidence 458999999999999998863321 13445999999999988865 999999876654 4432 22345566
Q ss_pred eEEEEe--CC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 207 ECVKVD--CL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 207 ~v~~v~--~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
.+..+| ++ ++|.+|+++|++.+.. .+|.+|++....++ ..-|+++|.++|+++|+ ++++|+||..+.+
T Consensus 270 ~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA-----~LmvD~AH~aGLI 340 (586)
T PLN02271 270 FFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP--REWDYARFRQIADKCGA-----VLMCDMAHISGLV 340 (586)
T ss_pred eEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc--CcCCHHHHHHHHHHcCC-----EEEEECccccccc
Confidence 554444 65 5689999999995432 23457777543333 66899999999999999 9999999987776
Q ss_pred cccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC----------CccccC---CC-CCcccCCCCCh
Q 011842 284 PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS----------NVEYLA---SR-DATIMGSRNGH 349 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~----------~~~yl~---~~-~~~~~~sr~~~ 349 (476)
+...+...+. .+|+++++.||||.+|.| |+++++++....... .++|.. .. -+.++++....
T Consensus 341 a~g~~~sP~~---~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~ 416 (586)
T PLN02271 341 AAKECVNPFD---YCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNN 416 (586)
T ss_pred ccCcCCCCCc---CCcEEEeCCcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHH
Confidence 5443322222 389999999999999998 888887642211100 001100 00 02345555445
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCC----cHH---Hhhcee------
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQ----DEE---FVRRWQ------ 415 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~----~~~---~~~~~~------ 415 (476)
...++..+++......++++.++..+|++.|.+.|.+.|+.++.... +..+.+.... ... .+....
T Consensus 417 ~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn 496 (586)
T PLN02271 417 HIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKT 496 (586)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccc
Confidence 56667778887766778999999999999999999999998775332 4555554321 111 222112
Q ss_pred -ecc-----cCCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 416 -LAC-----QGNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 416 -l~~-----~~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
++. ....+|+.+ .....++|++.+.+.|.++.+
T Consensus 497 ~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 497 AIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred cCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 221 135688865 445578999999988888776
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=176.25 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.+++++ +++++|+++ ..+++|+|+++++..++.+... ||+.|+++.+++..+...++..|++++.+|.++++
T Consensus 60 ~~lr~~----ia~~~~~~~--~~I~~~~G~~~~l~~~~~~~~~--~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 60 VELRAA----LAEHLGVPP--EHVAVGCGSVALCQQLVQATAG--PGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDH 131 (352)
T ss_pred HHHHHH----HHHHhCcCH--HHEEECCCHHHHHHHHHHHhcC--CCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCC
Confidence 455555 555667654 3588999998888777666544 89999999999888888889999999999998778
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
.+|++++++.+.++++ +|+++++++++|.+-|.++|.++|++ +++ ++++|++|+.+..... ..+.+...
T Consensus 132 ~~~~~~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~-----~ii~De~y~~~~~~~~-~~~~~~~~ 202 (352)
T PRK03321 132 THDLDAMAAAITDRTR---LIFVCNPNNPTGTVVTPAELARFLDAVPADV-----LVVLDEAYVEYVRDDD-VPDGLELV 202 (352)
T ss_pred CCCHHHHHHhhccCCC---EEEEeCCCCCcCCCcCHHHHHHHHHhCCCCe-----EEEEechHHHhccCcC-CCcHHHHH
Confidence 8999999999976554 77778999999999999999999997 477 9999999986554221 11111111
Q ss_pred c-ccc-EEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-ChhcHHHHHH
Q 011842 296 K-PIG-SVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-GYKGFQKEVQ 371 (476)
Q Consensus 296 ~-~~D-si~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-g~~g~~~~~~ 371 (476)
. .-+ +++.|+.|.++ .++++|++++++++++.+.... . ... ...+.+.+++..+ ..+.+.+.++
T Consensus 203 ~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~-----~~~-----~s~~~q~~a~~~l~~~~~~~~~~~ 270 (352)
T PRK03321 203 RDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--V-----PFS-----VNSLAQAAAIASLAAEDELLERVD 270 (352)
T ss_pred hhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--C-----CCC-----CCHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 122 45567889886 6789999999887776654321 0 011 1234444444443 2234555666
Q ss_pred HHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHhh-----ceee-cccCCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 372 KCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFVR-----RWQL-ACQGNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~~-----~~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
+..+.++++.+.|++.|+. ..++..+.+.++.+. ..++.+ +..+ +...+.+|+++ .+.++++.|+++|+
T Consensus 271 ~~~~~r~~~~~~L~~~~~~-~~~~~g~~i~i~l~~~~~~~~~~l~~~gI~v~~~~~~~iRi~~---~~~~~~~~~~~al~ 346 (352)
T PRK03321 271 AVVAERDRVRAALRAAGWT-VPPSQANFVWLPLGERTADFAAAAAEAGVVVRPFAGEGVRVTI---GAPEENDAFLRAAR 346 (352)
T ss_pred HHHHHHHHHHHHHHHCCCc-cCCCCCCEEEEeCCCCHHHHHHHHHHCCEEEEccCCCcEEEee---CCHHHHHHHHHHHH
Confidence 6667778899999888764 334445566666543 233332 2222 23345699987 68999999999998
Q ss_pred HHHH
Q 011842 445 ENRS 448 (476)
Q Consensus 445 ~~~~ 448 (476)
++.+
T Consensus 347 ~~~~ 350 (352)
T PRK03321 347 AWRA 350 (352)
T ss_pred HHhc
Confidence 8754
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=174.89 Aligned_cols=329 Identities=15% Similarity=0.112 Sum_probs=222.7
Q ss_pred HhcccccccCCCCcCCcc-hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhH
Q 011842 92 LMERTKHHLGYPYNLDFD-YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEG 170 (476)
Q Consensus 92 ~~~~~~~~~g~p~~~~~~-~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~A 170 (476)
++.++.+|+|+-.+.+.- ...+..+..+.++..+...+. +..++++++.+..|+++|.++ +++.+-|-..
T Consensus 139 lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~-----G~~~~hkelE~l~A~f~g~e~----a~vF~mGf~T 209 (519)
T KOG1357|consen 139 LNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEA-----GTTEEHKELEELVARFLGVED----AIVFSMGFAT 209 (519)
T ss_pred eeecccccccccccCCcCChHHHHHHHHhcccccccchhc-----ccHHHHHHHHHHHHHhcCCcc----eEEEeccccc
Confidence 444566677766666554 344455556666655554444 456899999999999999985 5555555555
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC-------CCCc---EEEEE
Q 011842 171 NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN-------KDKP---AIINV 240 (476)
Q Consensus 171 n~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~-------~~~p---~~vv~ 240 (476)
|-..+-+... |+..|+.++.+|.|+...|++.|+.++.+.++ |+.+||+.|.+. |.+| .+|++
T Consensus 210 Ns~~~p~l~~--~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iiv 282 (519)
T KOG1357|consen 210 NSMNIPSLLG--KGSLIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICV 282 (519)
T ss_pred cccCcceeec--CCcceeeccccchheeccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeee
Confidence 5444444444 88999999999999999999999999999998 889999988653 3333 34444
Q ss_pred eeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCCCCCCcc--cccEEEEcCCCCCCCCCCcee
Q 011842 241 NIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAPKVSFKK--PIGSVSVSGHKFVGCPMPCGV 317 (476)
Q Consensus 241 t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~~~~~~~--~~Dsi~~s~hK~l~~p~~~G~ 317 (476)
-.-.++-|.+.+++++.+++|+|.. +++.|+||+.+.. +..+....+-+.. .+|++...+.|.+++ ..|+
T Consensus 283 egiysmEg~iv~Lp~vvalkkkyka-----yl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga--~GGy 355 (519)
T KOG1357|consen 283 EGIYSMEGTIVDLPEVVALKKKYKA-----YLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA--AGGY 355 (519)
T ss_pred ccceeccCeecccHHHHHhhccccE-----EEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc--ccce
Confidence 4448899999999999999999999 9999999987665 4444433333322 389999999999985 3455
Q ss_pred EEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH-HHHHHHh----ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe
Q 011842 318 QITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL-WYTLNRK----GYKGFQKEVQKCLRNAHYLKDRLLDAGISAM 392 (476)
Q Consensus 318 l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~-~~~l~~~----g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~ 392 (476)
+..++++++.+.....+. ...+....+.+.+ ..+++.+ |...-++.++++.++++||+..|+..|+.+.
T Consensus 356 iagsk~lid~lrt~s~~~------~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivy 429 (519)
T KOG1357|consen 356 IAGSKELIDYLRTPSPSA------LYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVY 429 (519)
T ss_pred ecCcHHHHhhhccCCCce------eecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEe
Confidence 666666665553332221 1111111112222 1233332 3445688999999999999999999998776
Q ss_pred ecCCeeEEEEec--CC-cH----HHhhc-eee-----cc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 393 LNELSSTVVFER--PQ-DE----EFVRR-WQL-----AC---QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 393 ~~~~~~iv~f~~--~~-~~----~~~~~-~~l-----~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+..++++.+-. |. -. +..++ +.+ |+ ...+.|++.+.++|.|++|.+++.+.++.+.
T Consensus 430 G~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 430 GNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDE 502 (519)
T ss_pred cCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence 666665544321 21 11 22221 221 22 2356799999999999999999999988744
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=157.08 Aligned_cols=297 Identities=15% Similarity=0.148 Sum_probs=221.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++.+++.+-+...|..... ..-++..+|+.+.-.|+....+ |||.|++-...-++ +...++.+|+++..|+.
T Consensus 47 e~~qIm~~v~egikyVFkT~n~-~tf~isgsGh~g~E~al~N~le--Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~ 123 (385)
T KOG2862|consen 47 EFVQIMDEVLEGIKYVFKTANA-QTFVISGSGHSGWEAALVNLLE--PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEA 123 (385)
T ss_pred HHHHHHHHHHHHHHHHhccCCC-ceEEEecCCcchHHHHHHhhcC--CCCeEEEEEechHHHHHHHHHHhhCceeeEEec
Confidence 5568888888888888876643 3456666777777777777766 99998887777666 45788999999999998
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC-HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD-LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~-l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+....+.++.++++|.+++ |.+|.++++.|.||..+| ++.+.++|++|+. +++||++-+-+..+ +
T Consensus 124 ~~G~~~~le~i~~~lsqh~--p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~-----lllVD~VaSlggt~-------F 189 (385)
T KOG2862|consen 124 DIGQAVPLEEITEKLSQHK--PKAVFVTHGDSSTGVLQDLLAISGELCHKHEA-----LLLVDTVASLGGTE-------F 189 (385)
T ss_pred CcccCccHHHHHHHHHhcC--CceEEEEecCccccccchHHHHHHHHhhcCCe-----EEEEechhhcCCcc-------c
Confidence 8888899999999999864 568999999999999999 7788899999999 99999997755555 5
Q ss_pred CCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC----cc-ccCC--------CC---CcccCCCCChhHHHHH
Q 011842 293 SFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN----VE-YLAS--------RD---ATIMGSRNGHAPIFLW 355 (476)
Q Consensus 293 ~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~----~~-yl~~--------~~---~~~~~sr~~~~~l~~~ 355 (476)
.+.+. +|+....+.|.+++|.|.+.+..+++..+.+..+ .. |+.. ++ ..+--+.+......+-
T Consensus 190 ~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr 269 (385)
T KOG2862|consen 190 EMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLR 269 (385)
T ss_pred eehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHH
Confidence 55565 9999999999999999999999988765554221 22 3221 11 1123344545566788
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC------CeeEEEEecC-CcHH----Hhhceee-------c
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE------LSSTVVFERP-QDEE----FVRRWQL-------A 417 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~------~~~iv~f~~~-~~~~----~~~~~~l-------~ 417 (476)
++|+.+-.+|+++.+++.++++++|+..|++.|....... ....|..... +..+ .++.+.+ +
T Consensus 270 ~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~ 349 (385)
T KOG2862|consen 270 AALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGP 349 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCC
Confidence 8888888999999999999999999999999998655422 1222322221 2122 2334444 2
Q ss_pred ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 CQGNIAHVVV-MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 ~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+..+||.+ .-+.+.|-||..++.|+...++
T Consensus 350 ~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 350 TVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 3467899964 5566899999999999887654
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=175.00 Aligned_cols=276 Identities=12% Similarity=0.023 Sum_probs=191.2
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
.+++.+++++|++++ ++++|+|+++++...+.+... +|+.|++..++|..+...++..|++++.++.++++.+|++
T Consensus 75 ~lr~~ia~~~~~~~~--~i~~t~G~~~~l~~~~~~~~~--~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 150 (371)
T PRK05166 75 ALREAIAARTGVPAD--RIILGNGSEDLIAVICRAVLR--PGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLD 150 (371)
T ss_pred HHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHH
Confidence 345556677788643 599999999998877776654 8999999999999999999999999999999878899999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCC-ccc--
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF-KKP-- 297 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~-~~~-- 297 (476)
+|++.+.++++ +|++++++|+||.+.+.+++.++++. .+. ++++|++|+.+... ....+.+.. .+.
T Consensus 151 ~l~~~~~~~~~---~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~-----~ii~De~y~~~~~~-~~~~~~~~~~~~~~~ 221 (371)
T PRK05166 151 ALCAAVARAPR---MLMFSNPSNPVGSWLTADQLARVLDATPPET-----LIVVDEAYAEYAAG-DDYPSALTLLKARGL 221 (371)
T ss_pred HHHHhhhcCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEECcHHHhcCC-cCcccHHHHHhhcCC
Confidence 99999977665 77789999999999998888777774 356 99999999765521 111111111 111
Q ss_pred ccEEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~ 374 (476)
-.++..|+.|.++ +++++|++++. +++.+.+.....+. + ...+.+.+++..+. ...+++.++...
T Consensus 222 ~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~~~---------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~ 289 (371)
T PRK05166 222 PWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRTPF---------N---VNGAAQAAALAALDDEEHLAKGVALAL 289 (371)
T ss_pred CEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhccCC---------C---CCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1356778899886 89999998875 44555443211111 1 11234434444432 234666677788
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeec-c----cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLA-C----QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~-~----~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
++++++.+.|++.|+. +.++.++.+.+..+. +.++. ++..+. . ..+.+|+++. +.++.++|.++|
T Consensus 290 ~~r~~l~~~L~~~g~~-~~p~~g~fl~~~~~~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~~l 365 (371)
T PRK05166 290 AERERLKKELAEMGYR-IAPSRANFLFFDARRPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVAAL 365 (371)
T ss_pred HHHHHHHHHHHHCcCe-eCCCcCCEEEEeCCCCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHHHH
Confidence 8889999999998864 445556666666543 23332 222221 1 2468999886 688899999998
Q ss_pred HHHH
Q 011842 444 IENR 447 (476)
Q Consensus 444 ~~~~ 447 (476)
+++.
T Consensus 366 ~~i~ 369 (371)
T PRK05166 366 DKVL 369 (371)
T ss_pred HHHh
Confidence 7753
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-18 Score=176.05 Aligned_cols=295 Identities=12% Similarity=0.061 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH-HcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~-~~G~~v~~v~ 212 (476)
+..++++++++++.+.+|.. .+...+++|+|+++++...+.+..+ ||+.|+++++.|..+...+. ..|++++.||
T Consensus 87 G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~--pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~ 164 (468)
T PLN02450 87 GLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE--PGDAFLLPTPYYPGFDRDLKWRTGVEIVPIH 164 (468)
T ss_pred ChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC--CCCEEEECCCCCCchHHHHhhcCCcEEEEEe
Confidence 55689999999999877732 2334699999999999888887776 99999999999999888777 5899999999
Q ss_pred CC--CCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CL--ISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~--~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
++ .+..+|++.|++++.+. +.++.+|++++|+||||.+-+ +++|+++|++|++ ||++|++|+...+.
T Consensus 165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~-----~iI~DE~Y~~~~f~ 239 (468)
T PLN02450 165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNI-----HLISDEIYSGTVFD 239 (468)
T ss_pred cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCc-----EEEEEccccccccC
Confidence 85 34578999999988652 234557788899999999865 6778888999999 99999999875443
Q ss_pred ccccCCCCCC----------cccccEEEEcCCCCCC-CCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 285 FVKKAPKVSF----------KKPIGSVSVSGHKFVG-CPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 285 ~~~~~~~~~~----------~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
.....+.+.. ...--.+..++.|.++ +++++|+++++++. .+.+.....|. . ...+
T Consensus 240 ~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~---------~---~s~~ 307 (468)
T PLN02450 240 SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFG---------L---VSSQ 307 (468)
T ss_pred CCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcC---------C---CCHH
Confidence 2111111110 0111245678889775 89999999998663 44332221121 0 1124
Q ss_pred HHHHHHHHhChh-----cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-EEEEecCC---c----H--HH----h--
Q 011842 353 FLWYTLNRKGYK-----GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-TVVFERPQ---D----E--EF----V-- 411 (476)
Q Consensus 353 ~~~~~l~~~g~~-----g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-iv~f~~~~---~----~--~~----~-- 411 (476)
.+.++...+... -+++..+++.+.++.+.+.|++.|+.. .++..+ .+.++.+. . . ++ .
T Consensus 308 ~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~-~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~ 386 (468)
T PLN02450 308 TQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKC-LKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYE 386 (468)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-cCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHh
Confidence 444444444332 245667778888899999999987643 344444 44445431 1 1 11 1
Q ss_pred hceeecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 412 RRWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 412 ~~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+..+.. ..+++|+++.. .+.++++..++.|+++.+...
T Consensus 387 ~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 387 VKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence 1333321 13689999875 457899999999888765543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-18 Score=174.35 Aligned_cols=290 Identities=11% Similarity=0.027 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCe--------
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRME-------- 207 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~-------- 207 (476)
+..++++++++|+.+..|++.++.++++|+|+++++... ..+.. ||+.|++.+++|..+...++..|++
T Consensus 77 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~--~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~ 153 (409)
T PRK07590 77 GYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFG--PDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGR 153 (409)
T ss_pred CCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcC--CCCEEEEeCCCCcchHHHHHHcCCccccccccc
Confidence 567999999999887777765556799999999997763 33433 8999999999999999999999987
Q ss_pred ---EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 208 ---CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 208 ---v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
++.+|++.++.+.++ ++ ++ ++.+|+++++.|+||.+-+ +++|+++|++|++ ||++|++|+.+
T Consensus 154 ~~~~~~v~~~~~~~~~~d-~~---~~---~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-----~iI~De~Y~~~ 221 (409)
T PRK07590 154 YSGIVYLPCTAENNFVPE-LP---EE---KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGS-----LILFDAAYEAF 221 (409)
T ss_pred ccceeEeecccccCCccc-Cc---cc---CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCe-----EEEEEccchhh
Confidence 888998754333332 11 12 3347777799999999855 6778888999999 99999999865
Q ss_pred cccccccCCCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCC------ccccCCCCCcccCCCCChhHH
Q 011842 282 MMPFVKKAPKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSN------VEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~------~~yl~~~~~~~~~sr~~~~~l 352 (476)
........+...... ..-++..|+.|.++ +++++|++++++++++.+... ..+........ .+ ...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~---~s~~ 297 (409)
T PRK07590 222 ISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKF-NG---VSYI 297 (409)
T ss_pred ccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcc-cC---cCHH
Confidence 543211111111111 12245678999884 899999999988776522100 00000000001 11 1234
Q ss_pred HHHHHHHHh---ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh----h--ceee-cc-
Q 011842 353 FLWYTLNRK---GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV----R--RWQL-AC- 418 (476)
Q Consensus 353 ~~~~~l~~~---g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~----~--~~~l-~~- 418 (476)
.+.++...+ +...+++..++..++++++.+.|++.++....+..++.+.++.++ ..++. + ++.+ +.
T Consensus 298 ~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~ 377 (409)
T PRK07590 298 VQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGS 377 (409)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChh
Confidence 444444433 223455667777888899999999887543333456666666653 22222 2 2322 21
Q ss_pred -----cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 -----QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 -----~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+.+|+++ ..++++++..++.|.++
T Consensus 378 ~f~~~~~~~iRi~~--~~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 378 GFGPSGEGYFRLSA--FGSRENVLEAMERIKKA 408 (409)
T ss_pred HhCCCCCCEEEEEc--cCCHHHHHHHHHHHHhh
Confidence 135899985 35789999988888653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-18 Score=169.94 Aligned_cols=269 Identities=11% Similarity=-0.013 Sum_probs=180.2
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++.+++.+|.+++ .+++|+|+++++..++.. .. |+++| +.+++|..+...++..|++++.||++. ..+|.+
T Consensus 44 ~lr~~ia~~~~~~~~--~I~it~Gs~~~l~~~~~~-~~--~~~vv-~~~P~y~~y~~~~~~~G~~v~~vp~~~-~~~~~~ 116 (332)
T PRK06425 44 DIEDQIKIYTQGLKI--KVLIGPGLTHFIYRLLSY-IN--VGNII-IVEPNFNEYKGYAFTHGIRISALPFNL-INNNPE 116 (332)
T ss_pred HHHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHH-hC--CCcEE-EeCCChHHHHHHHHHcCCeEEEEeCCc-ccCcHH
Confidence 455557777888754 499999999999887753 33 66544 458999999999999999999999874 345665
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc--c
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK--P 297 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~--~ 297 (476)
.+++ .+++ +|++++++|+||.+-+ +++|+++|++|++ ||++|++|+.+.... ..+...... .
T Consensus 117 ~l~~---~~~k---~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-----~iI~DE~Y~~~~~~~--~~~~~~~~~~~~ 183 (332)
T PRK06425 117 ILNN---YNFD---LIFIVSPDNPLGNLISRDSLLTISEICRKKGA-----LLFIDEAFIDFVPNR--AEEDVLLNRSYG 183 (332)
T ss_pred HHhh---cCCC---EEEEeCCCCCcCCccCHHHHHHHHHHHHHcCC-----EEEEecchhcccccc--chhHHHHhccCC
Confidence 5542 2333 7777899999999866 6777888899999 999999998664321 111111111 1
Q ss_pred ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEVQKCLR 375 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~~~~~~ 375 (476)
--++..|+.|.++ +++++|++++++++++.+...... . ..+ .+.+ .++.....+. .++..+...+
T Consensus 184 ~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~-----~--~~~-----~~~~-~~l~~~~~~~~~~~~~~~~~~ 250 (332)
T PRK06425 184 NVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEP-----W--SVC-----DPAI-DFIRSIDLDYVAKHSLDIMEN 250 (332)
T ss_pred CEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCC-----C--ccC-----HHHH-HHHHHhhhHHHHHHHHHHHHH
Confidence 1345678889887 899999999998877665432111 0 001 1111 1122222222 3456777888
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceee-cc------cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQL-AC------QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l-~~------~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
.++++.+.|++.|+....++.++.+.+..++..++.+ +..+ +. ..+++|+++. +.++.++|+++|
T Consensus 251 ~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al 327 (332)
T PRK06425 251 ERSYLINNLEAMGFRAAGDPSANFITFMIPDAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR---RRSFNIKLVNAL 327 (332)
T ss_pred HHHHHHHHHHHCCCEECCCCCceEEEEEcCCHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHH
Confidence 8999999999988654445566777777664443332 2232 11 1358999984 789999999999
Q ss_pred HHHH
Q 011842 444 IENR 447 (476)
Q Consensus 444 ~~~~ 447 (476)
+++.
T Consensus 328 ~~~~ 331 (332)
T PRK06425 328 RNFL 331 (332)
T ss_pred HHHh
Confidence 8763
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-18 Score=172.18 Aligned_cols=267 Identities=16% Similarity=0.149 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH----HHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV----FKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v~~~~~ 216 (476)
..++.+.+++++|.+. .+++++|+.|+..++.+... ||+.|+++...|.+. ...++..|++++.++.+
T Consensus 65 ~~~le~~lA~l~g~~~----av~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 136 (389)
T PRK05968 65 VRAFEEMLAKLEGAED----ARGFASGMAAISSTVLSFVE--PGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-- 136 (389)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC--
Confidence 4455566888889864 57778889999888876654 999999999988753 35667789999988764
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++|++++ ++++ +|.+.+++++++.+.|+++|+++|++||+ ++++|++|+.+... .. +. .
T Consensus 137 ---d~~~l~~~i-~~tk---lV~ie~pt~~~~~~~dl~~i~~la~~~gi-----~vivD~a~a~~~~~--~p---~~--~ 197 (389)
T PRK05968 137 ---DEEAVAKAL-PGAK---LLYLESPTSWVFELQDVAALAALAKRHGV-----VTMIDNSWASPVFQ--RP---IT--L 197 (389)
T ss_pred ---CHHHHHHhc-ccCC---EEEEECCCCCCCcHHHHHHHHHHHHHcCC-----EEEEECCCcchhcc--Cc---hh--c
Confidence 899999988 4444 78888999999999999999999999999 99999999765432 11 11 2
Q ss_pred cccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|+++.|++|++++|. ..|+++.++++++.+... ..++. .. ...+..|..+. +.+.+..++++.
T Consensus 198 g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g--------~~--~~~~~A~~~l~--~L~tl~~r~~~~ 265 (389)
T PRK05968 198 GVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLG--------AK--LSPFEAWLLLR--GLRTLPLRMKAH 265 (389)
T ss_pred CCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCC--------CC--CChHHHHHHHc--ccCcHHHHHHHH
Confidence 47999999999999764 368888777765544321 11221 11 12355555544 446788899999
Q ss_pred HHHHHHHHHHHHhcCCe-EeecCC------------eeEEEEecCCc---HHHhhceee---------------c-----
Q 011842 374 LRNAHYLKDRLLDAGIS-AMLNEL------------SSTVVFERPQD---EEFVRRWQL---------------A----- 417 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~-~~~~~~------------~~iv~f~~~~~---~~~~~~~~l---------------~----- 417 (476)
.++++++.+.|++.+.. .+..|. .++++|...+. ..|.+.+.+ +
T Consensus 266 ~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~ 345 (389)
T PRK05968 266 EASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVL 345 (389)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccc
Confidence 99999999999997643 333231 35888887532 233333321 0
Q ss_pred ----------c---cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 ----------C---QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 ----------~---~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
. ..+.+|+++....+++-++.|-.+|.++
T Consensus 346 ~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 346 QQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA 387 (389)
T ss_pred cccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence 0 0257899998776666666665555543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-18 Score=171.85 Aligned_cols=210 Identities=13% Similarity=0.109 Sum_probs=160.3
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g 217 (476)
..+.+.+++|-|.+. ++++++|+.|+..++.+... +|+.|+++...|.+....+ +..|+++..++..
T Consensus 65 ~~le~~la~LEg~~~----a~~~~SGmaAi~~~~~~ll~--~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~--- 135 (395)
T PRK08114 65 FSLQEAMCELEGGAG----CALYPCGAAAVANAILAFVE--QGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL--- 135 (395)
T ss_pred HHHHHHHHHHhCCCe----EEEEhHHHHHHHHHHHHHcC--CCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC---
Confidence 345555777777653 78899999999988887754 8999999999987766544 5569999998754
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC--CCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG--FTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g--~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|.+.++++|+++++ +|.+.+++|++|.+.||++|+++|+++| + +++||++++.++.. +..
T Consensus 136 --d~~~l~~~l~~~Tr---lV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~-----~lvVDnT~a~p~~~--------~pl 197 (395)
T PRK08114 136 --IGADIAKLIQPNTK---VVFLESPGSITMEVHDVPAIVAAVRSVNPDA-----VIMIDNTWAAGVLF--------KAL 197 (395)
T ss_pred --CHHHHHHhcCCCce---EEEEECCCCCCCEeecHHHHHHHHHHhCCCC-----EEEEECCCcccccc--------CHH
Confidence 78999999987775 8999999999999999999999999985 8 99999999765441 212
Q ss_pred c-cccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 296 K-PIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 296 ~-~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
+ ++|++..|.|||++++- ..|+++.+++..+.+... .+ ..|. ...+...|..+ .|.+.+.-++++
T Consensus 198 ~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~-~~-------~~G~--~~~p~~a~l~~--rgl~TL~lR~~~ 265 (395)
T PRK08114 198 DFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLREN-SY-------LMGQ--MVDADTAYMTS--RGLRTLGVRLRQ 265 (395)
T ss_pred HcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHH-HH-------hccC--CCCHHHHHHHH--cCCCcHHHHHHH
Confidence 2 49999999999999884 778777766543333211 11 1122 12356666444 466788899999
Q ss_pred HHHHHHHHHHHHHhcCCe
Q 011842 373 CLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~ 390 (476)
..++|..+.+.|++.+..
T Consensus 266 ~~~na~~va~~L~~hp~V 283 (395)
T PRK08114 266 HEESSLKVAEWLAEHPEV 283 (395)
T ss_pred HHHHHHHHHHHHHcCCCE
Confidence 999999999999998753
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=168.78 Aligned_cols=275 Identities=12% Similarity=0.061 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS- 216 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~- 216 (476)
.+++++ ++++++++++ ++++|+|+++++..++.+. . + +.|++.++.|..+...++..|++++.++++.+
T Consensus 57 ~~lr~~----ia~~~~~~~~--~i~it~Ga~~~l~~~~~~~-~--~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 57 LELRKR----IASFEQLDLE--NVILGNGATELIFNIVKVT-K--P-KKVLILAPTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHH----HHHHhCCChh--hEEECCCHHHHHHHHHHHh-C--C-CcEEEecCChHHHHHHHHHcCCeeEEEeCcccc
Confidence 355555 4555577654 5999999999998887764 2 4 47889999999999999999999999998743
Q ss_pred -CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 -GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 -g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.+| +++.+.+.+++ .++++++++|+||.+-+ +++|+++|++|++ |+++|++|..+..... ..+.+
T Consensus 127 ~~~~d-~~~~~~~~~~~---~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~-----~ii~De~Y~~~~~~~~-~~~~~ 196 (354)
T PRK06358 127 NFAAN-EIVLEEIKEEI---DLVFLCNPNNPTGQLISKEEMKKILDKCEKRNI-----YLIIDEAFMDFLEENE-TISMI 196 (354)
T ss_pred CCCcc-HHHHHhhccCC---CEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCC-----EEEEeCcccccCCCcc-chhHH
Confidence 4688 66666664443 37778899999999965 8888889999999 9999999976654321 11111
Q ss_pred CCcc--cccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HH
Q 011842 293 SFKK--PIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQ 367 (476)
Q Consensus 293 ~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~ 367 (476)
.... .--++..|+.|.++ .++++||+++++ .+++.+...... .+ ...+.++++...+.... ++
T Consensus 197 ~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~---------~~---~~~~~q~~~~~~l~~~~~~~ 264 (354)
T PRK06358 197 NYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREP---------WS---INTFADLAGQTLLDDKEYIK 264 (354)
T ss_pred HhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC---------Cc---chHHHHHHHHHHhccHHHHH
Confidence 1111 11245678889887 999999999864 455444321110 11 12344555555553322 46
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeec-c------cCCEEEEEEcCCCCHHH
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLA-C------QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~-~------~~~~lRv~~~~~~T~ed 435 (476)
+.++...++++++.+.|++.+...+.++..+.+.+..++..++.+ +..+. . ..+++|+++ .+.++
T Consensus 265 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~---~~~~~ 341 (354)
T PRK06358 265 KTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIFFKLEKPIDLRKELLKKGILIRSCSNYRGLDENYYRVAV---KSRED 341 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEcCCcceEEEEEcCchHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEe---CCHHH
Confidence 677788888999999998874334445566666666665444432 22221 1 135799987 68899
Q ss_pred HHHHHHHHHHHH
Q 011842 436 LDDFLNELIENR 447 (476)
Q Consensus 436 id~~~~~l~~~~ 447 (476)
.++|+++|+++.
T Consensus 342 ~~~l~~~l~~~~ 353 (354)
T PRK06358 342 NKKLLKALEVIL 353 (354)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-18 Score=172.80 Aligned_cols=293 Identities=13% Similarity=0.010 Sum_probs=187.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccE--EEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g--~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
.|..++++++.+|+.+..+...++..+ ++|+|+++|+..++.+.....||+.|++++++|..+..+++.+|++++.+|
T Consensus 69 ~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 69 EGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYP 148 (396)
T ss_pred CCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEe
Confidence 356799999999987654432122234 899999999998876543223999999999999999999999999999999
Q ss_pred C-C-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 213 C-L-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 213 ~-~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
+ + +++.+|++.|++++.....+..+++++++.|+||.+-+ +++|+++|++|++ |+++|++|..+......
T Consensus 149 ~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~l~~~~~~ 223 (396)
T PRK09257 149 YYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGL-----IPFLDIAYQGFGDGLEE 223 (396)
T ss_pred ccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-----EEEEeccccccccchHH
Confidence 7 3 34789999999998753222346667889999999854 7888999999999 99999999875532111
Q ss_pred -cCCCCCCcc-c-ccEEEEcCCCCCC-CCCCceeEEe--eh-hhh----hhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 288 -KAPKVSFKK-P-IGSVSVSGHKFVG-CPMPCGVQIT--RM-EHI----NVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 288 -~~~~~~~~~-~-~Dsi~~s~hK~l~-~p~~~G~l~~--~~-~~~----~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
..+...+.. . --++..|+.|.++ +++++||+++ .+ +.+ ..+....... ..+. ..+.+.+
T Consensus 224 ~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~q~~ 293 (396)
T PRK09257 224 DAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTN-------YSNP---PAHGAAI 293 (396)
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhh-------cCCC---cHHHHHH
Confidence 111111111 1 1256678899888 4999999984 32 322 2221111100 1111 1222333
Q ss_pred HHHHhC--------hhcHHHHHHHHHHHHHHHHHHHHhcCC---eEeecCCeeEEE-EecCCc--HHHhhc--eeecccC
Q 011842 357 TLNRKG--------YKGFQKEVQKCLRNAHYLKDRLLDAGI---SAMLNELSSTVV-FERPQD--EEFVRR--WQLACQG 420 (476)
Q Consensus 357 ~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~iv~-f~~~~~--~~~~~~--~~l~~~~ 420 (476)
+...+. .+.+++..++..++++.+.+.|++.+. ..+..+...... +..+.. ..+..+ ..+...+
T Consensus 294 ~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~~~~~~l~~~~~V~~~p~~ 373 (396)
T PRK09257 294 VATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLTPEQVDRLREEFGVYAVGSG 373 (396)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCCHHHHHHHHHcCCEEEcCCC
Confidence 333222 123445667778888999999988752 233334444433 334321 112222 2222222
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
|+++.. .++++|+..++.|+++
T Consensus 374 ---ri~~~~-~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 374 ---RINVAG-LNESNIDYVAEAIAAV 395 (396)
T ss_pred ---eEEEee-CCHHHHHHHHHHHHhh
Confidence 887743 8899999999998764
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-18 Score=175.49 Aligned_cols=212 Identities=14% Similarity=0.142 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
...+++.++++++.|.+. .+++++|+.|+. ++..+.. +||.|+++++.|.+.. ..+...|++++.++..
T Consensus 133 pt~~aLE~~lA~leg~e~----ai~~~SG~aAi~-~il~ll~--~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~ 205 (464)
T PLN02509 133 PTRDALESLLAKLDKADR----AFCFTSGMAALS-AVTHLIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_pred HHHHHHHHHHHHHhCCCE----EEEeCcHHHHHH-HHHHHhC--CCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCC
Confidence 467788888999987653 677788877654 3344433 9999999999998765 3445679998888754
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|++++.++++ +|+++++++++|.+.|+++|+++|++||+ ++++|++|+.++.. . ..
T Consensus 206 -----d~e~l~~ai~~~Tk---lV~lesPsNPtG~i~Dl~~I~~lAk~~g~-----~lIVD~A~a~~~~~--~-----pl 265 (464)
T PLN02509 206 -----NLDEVAAAIGPQTK---LVWLESPTNPRQQISDIRKIAEMAHAQGA-----LVLVDNSIMSPVLS--R-----PL 265 (464)
T ss_pred -----CHHHHHHhCCcCCe---EEEEECCCCCCCCHHHHHHHHHHHHHcCC-----EEEEECCccccccC--C-----hh
Confidence 78999999977665 88899999999999999999999999999 99999999765432 1 11
Q ss_pred cccccEEEEcCCCCCCCCCC--ceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP--CGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..++|+++.|++||++++.+ .|+++++++. .+.+.. ..+. .++. ..+...|..++ +.+.+..+++
T Consensus 266 ~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~-~~~~-------~g~~--l~p~~A~l~lr--~L~tL~~R~~ 333 (464)
T PLN02509 266 ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF-LQNS-------EGSG--LAPFDCWLCLR--GIKTMALRIE 333 (464)
T ss_pred hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH-HHHh-------cCCC--cCHHHHHHHHh--hhhhHHHHHH
Confidence 22489999999999998765 7888876653 222210 0110 1111 23455555554 4467888999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 011842 372 KCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~ 389 (476)
+..++++++.+.|++.+.
T Consensus 334 r~~~nA~~la~~L~~~p~ 351 (464)
T PLN02509 334 KQQENARKIAMYLSSHPR 351 (464)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999999864
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-18 Score=171.63 Aligned_cols=280 Identities=16% Similarity=0.161 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH--HHHcC-CeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA--ARMYR-MECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~--~~~~G-~~v~~v~ 212 (476)
...++|++ +++++|.+. .++++||+++++.++.+... ||+.|+++.+.|.+.... +...+ ++++.++
T Consensus 35 ~~~~L~~~----la~~~g~~~----~~v~~~g~~a~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (333)
T PRK10534 35 TVNALQDY----AAELSGKEA----ALFLPTGTQANLVALLSHCE--RGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPID 104 (333)
T ss_pred HHHHHHHH----HHHHhCCCe----EEEeCchHHHHHHHHHHhcC--CCCeeEEechhhhhHhcCCchHHhcCceEEeec
Confidence 34455555 667788864 67999999999998887654 889999988888643322 34454 6888888
Q ss_pred CCCCCccCHHHHHHHHHcCC---CCcEEEEEeeCCCccccccCHH---HHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 213 CLISGEIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAVDDLD---LVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~id~l~---~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+++++.+|+++|++++.++. .++.+|+++++. +|.+.|.+ +|+++|++|++ |+++|+||.......
T Consensus 105 ~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~-----~lvvDEA~~~~~~~~- 176 (333)
T PRK10534 105 AAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNL-----ALHVDGARIFNAVVA- 176 (333)
T ss_pred CCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCC-----eEEeeHHHHHHHHHH-
Confidence 87789999999999986521 022366666544 59987765 45678889999 999999975211000
Q ss_pred ccCCCCCCcccccEEEEcCCCCCCCCCCce-eEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 287 KKAPKVSFKKPIGSVSVSGHKFVGCPMPCG-VQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 287 ~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G-~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
............|.++++++|.++.+ +| +++.++++++.+.....+. .++-+ ..++.+.+++..+ +.
T Consensus 177 ~~~~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~~~~~~-------~~~~~-~~~~~~a~~~~~l--~~ 244 (333)
T PRK10534 177 YGCELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARRWRKMT-------GGGMR-QAGILAAAGLYAL--KH 244 (333)
T ss_pred cCCCHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHHHHHHh-------CCchh-hHHHHHHHHHHHH--Hh
Confidence 00000111112466667899988754 67 4666666666553222111 00000 1123333333333 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHhh-----ceeecccCCEEEEEEcCCCCHHHHHH
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFVR-----RWQLACQGNIAHVVVMPNVTIDKLDD 438 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~~-----~~~l~~~~~~lRv~~~~~~T~edid~ 438 (476)
..+.+++..+.++++.+.|++.|+. +.++.+++++++.++ ..++.+ ++.+. .+..+|++.+..+|+|+++.
T Consensus 245 ~~~~~~~~~~~r~~l~~~L~~~g~~-~~~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~-~~~~~rl~~~~r~t~e~~~~ 322 (333)
T PRK10534 245 NVARLQEDHDNAAWLAEQLREAGAD-VMRQDTNMLFVRVGEEQAAALGEYMRERNVLIN-ASPIVRLVTHLDVSREQLAE 322 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCc-cCCCCceEEEEECCchhHHHHHHHHHHcCeeec-CCceEEEEEEeCCCHHHHHH
Confidence 2355556666788999999999875 445578888887763 222222 22232 23467998887889999999
Q ss_pred HHHHHHHHH
Q 011842 439 FLNELIENR 447 (476)
Q Consensus 439 ~~~~l~~~~ 447 (476)
+++.|++..
T Consensus 323 ~~~~l~~~~ 331 (333)
T PRK10534 323 VVAHWRAFL 331 (333)
T ss_pred HHHHHHHHh
Confidence 999998654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.8e-18 Score=173.11 Aligned_cols=210 Identities=16% Similarity=0.160 Sum_probs=156.5
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
++.+.++++.|.+. .+++++|+.|+..++.+... ||+.|+++.+.|.+ +...+...|++++.++.+
T Consensus 63 ~le~~lA~l~g~~~----av~~~sG~~Ai~~~l~al~~--~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~---- 132 (391)
T TIGR01328 63 NLEGRIAFLEGTEA----AVATSSGMGAIAATLLTILK--AGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA---- 132 (391)
T ss_pred HHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC----
Confidence 44555788888864 78899999999888877654 89999999987753 345566679999998875
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
|++++++++.++++ +|++.++++++|.+.|+++|+++|+++|+ ++++|++|+.+... . .....+
T Consensus 133 -d~e~l~~~i~~~tk---lV~le~p~Np~G~v~dl~~I~~la~~~gi-----~livD~a~a~~~~~--~-----~~~~g~ 196 (391)
T TIGR01328 133 -IPEEVKAHIKDNTK---IVYFETPANPTMKLIDMERVCRDAHSQGV-----KVIVDNTFATPMLT--N-----PVALGV 196 (391)
T ss_pred -CHHHHHHhhccCCe---EEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCCchhccC--C-----chhcCC
Confidence 89999999977665 88888999999999999999999999999 99999999754331 1 112348
Q ss_pred cEEEEcCCCCCCCCCC--ceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 299 GSVSVSGHKFVGCPMP--CGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 299 Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
|+++.|++|+++++.. .|+++.++++++.+... ..++ .++. ..++..|.+++ +.+.+..++++..+
T Consensus 197 Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~-------~g~~--l~~~~a~l~l~--~L~tl~~r~~~~~~ 265 (391)
T TIGR01328 197 DVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDM-------TGSV--ISPFDAWLILR--GLKTLNIRMKRHSE 265 (391)
T ss_pred CEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhC-------CCCC--CCcHHHHHHHh--CcCcHHHHHHHHHH
Confidence 9999999999986543 57777777665544321 1111 1211 22345555554 44677888999999
Q ss_pred HHHHHHHHHHhcCC
Q 011842 376 NAHYLKDRLLDAGI 389 (476)
Q Consensus 376 ~a~~l~~~L~~~g~ 389 (476)
+++++.+.|++.+.
T Consensus 266 na~~la~~L~~~p~ 279 (391)
T TIGR01328 266 NAMKVAEYLKSHPA 279 (391)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=169.37 Aligned_cols=276 Identities=13% Similarity=0.021 Sum_probs=187.7
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCCC--C-Cc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCLI--S-GE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~-g~ 218 (476)
++++.+++++|++++ ++++|+|+++++...+.+... ++ +.|+++++.|..+...++..|++++.+|++. + ..
T Consensus 63 ~lr~~ia~~~~~~~~--~I~~t~G~~~~l~~~~~~~~~--~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 138 (364)
T PRK04781 63 GLRSALAALYGCAPE--QLLIGRGSDEAIDLLVRALCV--PGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFH 138 (364)
T ss_pred HHHHHHHHHhCcChH--HEEEeCCHHHHHHHHHHHhcC--CCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCC
Confidence 444456666788653 599999999999888877654 67 7899999998888888899999999999842 2 35
Q ss_pred cCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 219 IDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 219 ~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
+|++++++.+. +++ .+|++++++|+||.+-+.+++.++++. ++. |+++|++|+.+... ....+..+..
T Consensus 139 ~d~~~l~~~~~~~~~---~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~-----~iI~Deay~~f~~~-~~~~~~~~~~ 209 (364)
T PRK04781 139 ADVPAIVAAALASNA---KLVFLCSPSNPAGSAIALDQIERALQALQGKA-----LVVVDEAYGEFSDV-PSAVGLLARY 209 (364)
T ss_pred cCHHHHHHHHhccCC---eEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCc-----EEEEeCcchhhcCC-cchHHHHhhC
Confidence 78998866553 333 377778899999999999888888875 366 99999999865421 1100111111
Q ss_pred ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh---hcHHHHHH
Q 011842 296 KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY---KGFQKEVQ 371 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~---~g~~~~~~ 371 (476)
.+ -++..|+.|.++ +++++|+++.++++++.+....... ..+ .+.+.++...+.. ....+.++
T Consensus 210 ~~-vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~-------~~~-----~~~~~~a~~~l~~~~~~~~~~~~~ 276 (364)
T PRK04781 210 DN-LAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY-------PVP-----TPCAALAEQALSAPALAVTARRVA 276 (364)
T ss_pred CC-EEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-------CCC-----HHHHHHHHHHHhcccHHHHHHHHH
Confidence 12 256688999886 8899999999988876664332111 111 2333333333321 23445566
Q ss_pred HHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCCcHHHh-----hceee-cc-----cCCEEEEEEcCCCCHHHHHHH
Q 011842 372 KCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQDEEFV-----RRWQL-AC-----QGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l-~~-----~~~~lRv~~~~~~T~edid~~ 439 (476)
+..++++++.+.|++. ++..+.++.++.+.++.++..++. +++.+ ++ ..+++|+++. +.++.++|
T Consensus 277 ~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~~~~l 353 (364)
T PRK04781 277 EVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQNDRV 353 (364)
T ss_pred HHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHHHHHH
Confidence 6778889999999887 443355666777777766543332 23333 21 1468999885 79999999
Q ss_pred HHHHHHHH
Q 011842 440 LNELIENR 447 (476)
Q Consensus 440 ~~~l~~~~ 447 (476)
+++|+++.
T Consensus 354 ~~al~~~~ 361 (364)
T PRK04781 354 LAALQRTQ 361 (364)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-17 Score=167.69 Aligned_cols=283 Identities=12% Similarity=-0.023 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++++++++..|.+.++.++++|+|+++++...+.+.....+++.|+++.++|..+...++..|++++.++.+.
T Consensus 61 G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~ 140 (374)
T PRK05839 61 GEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTK 140 (374)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeeccc
Confidence 45699999999999988865444569999999999887766654212789999999999999999999999999999975
Q ss_pred C--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 S--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ +.+|++.. .+ +++ .+|+++++.|+||.+-+ +++|+++|++||+ ||++|++|+.+... ....+
T Consensus 141 ~~~~~~d~~~~--~~-~~~---k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~-----~ii~DE~Y~~~~~~-~~~~s 208 (374)
T PRK05839 141 ENDFTPSLNEK--EL-QEV---DLVILNSPNNPTGRTLSLEELIEWVKLALKHDF-----ILINDECYSEIYEN-TPPPS 208 (374)
T ss_pred ccCCcCCcchh--hh-ccc---cEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCC-----EEEeccchhhcccC-CCCCC
Confidence 4 34554332 23 233 37777899999999854 7788888999999 99999999864321 11111
Q ss_pred CCCC-----c-c-cccEEEEcCCCC-CCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-
Q 011842 291 KVSF-----K-K-PIGSVSVSGHKF-VGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK- 361 (476)
Q Consensus 291 ~~~~-----~-~-~~Dsi~~s~hK~-l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~- 361 (476)
.... . . .--++..|+.|. +.+++++|+++.++++++.+.....++. .+-+ .+.+.++...+
T Consensus 209 ~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~-------~~~~---~~~q~~~~~~l~ 278 (374)
T PRK05839 209 LLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRTYLG-------CASP---LPLQKAAAVAWL 278 (374)
T ss_pred HhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHhhcC-------CCCC---hHHHHHHHHHhc
Confidence 1110 0 1 112556778895 6889999999998777665533222221 1111 12233332222
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh------ceeecc---------cCCEEEEE
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR------RWQLAC---------QGNIAHVV 426 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~------~~~l~~---------~~~~lRv~ 426 (476)
..+.+++..++..++++++.+.| +.. .++.++.+.++.+++.++.+ +..+.. ..+++|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~l---~~~--~p~gg~fi~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis 353 (374)
T PRK05839 279 DDEHAEFFRNIYAKNLKLAREIL---GIT--IPPATFYVWLPVDNDEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIA 353 (374)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc---CCC--CCCeeEEEEEeCCChHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEE
Confidence 22334556666666766666654 332 34556666666665443322 222211 13789999
Q ss_pred EcCCCCHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~ 447 (476)
+. .+.+++...++.|.++.
T Consensus 354 ~~--~~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 354 LV--YDTPKLEKALEIIKTYL 372 (374)
T ss_pred ec--CCHHHHHHHHHHHHHHh
Confidence 85 36899999988887764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=171.67 Aligned_cols=213 Identities=17% Similarity=0.178 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v 211 (476)
...+||++ +++++|.+. .++++||+.|+..++.+... ||+.|+++.+.|.+.. ..++..|++++.+
T Consensus 65 ~~~~Le~~----iA~~~g~~~----~l~~~sG~~Ai~~al~~ll~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v 134 (400)
T PRK06234 65 TSTEVENK----LALLEGGEA----AVVAASGMGAISSSLWSALK--AGDHVVASDTLYGCTFALLNHGLTRYGVEVTFV 134 (400)
T ss_pred cHHHHHHH----HHHHhCCCc----EEEEcCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHHHHHHhhCCeEEEEE
Confidence 34455555 666677642 78999999999888877665 9999999998886543 4457789999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+.+ |++++++++.++++ +|++++++|++|.+.|+++|+++|+++ |+ ++++|++|+.+... .
T Consensus 135 d~~-----d~e~l~~~i~~~tk---lI~iesP~NPtG~v~dl~~I~~la~~~~~~i-----~livDea~~~~~~~--~-- 197 (400)
T PRK06234 135 DTS-----NLEEVRNALKANTK---VVYLETPANPTLKVTDIKAISNIAHENNKEC-----LVFVDNTFCTPYIQ--R-- 197 (400)
T ss_pred CCC-----CHHHHHHHhccCCe---EEEEECCCCCCCCcCCHHHHHHHHHhcCCCC-----EEEEECCCCchhcC--C--
Confidence 865 89999999987665 888899999999999999999999997 88 99999999865432 1
Q ss_pred CCCCCcccccEEEEcCCCCCCCCC-C-ceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPM-P-CGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~-~-~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
.+ ...+|+++.|++|+++++. . .|++++++++++.+... ..+. .+.. ..++..|..++ +.+.+
T Consensus 198 -~l--~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~-------~g~~--l~p~~a~l~~~--~l~tl 263 (400)
T PRK06234 198 -PL--QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDM-------TGSV--IGPFEAFLIIR--GMKTL 263 (400)
T ss_pred -ch--hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHh-------cCCC--CCHHHHHHHHh--ccCcH
Confidence 01 1248999999999998543 3 58888888776554311 1111 1111 23455555544 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
..++++..++++++.+.|++.+.
T Consensus 264 ~~r~~~~~~na~~~a~~L~~~~~ 286 (400)
T PRK06234 264 QIRMEKHCKNAMKVAKFLESHPA 286 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 88999999999999999998764
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-18 Score=172.25 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
...+++.+.++++.|.+. .+++++|+.|+..++.+... ||+.|+++.+.|.+.. ..++..|++++.++.
T Consensus 64 p~~~~le~~lA~l~g~~~----~i~~ssG~~Ai~~~l~all~--~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~- 136 (398)
T PRK08249 64 PTVQAFEEKVRILEGAEA----ATAFSTGMAAISNTLYTFLK--PGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET- 136 (398)
T ss_pred hHHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-
Confidence 444566677888888753 68888899999988877655 8999999999998653 345567888887764
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.|++.++++|+++++ +|.++++++++|.+.|+++|+++|++||+ ++++|++|+.++.. .+ +
T Consensus 137 ----~d~e~l~~~i~~~tk---lV~ie~p~NPtg~v~dl~~I~~la~~~gi-----~livD~t~a~~~~~----~~-l-- 197 (398)
T PRK08249 137 ----GDHEQIEAEIAKGCD---LLYLETPTNPTLKIVDIERLAAAAKKVGA-----LVVVDNTFATPINQ----NP-L-- 197 (398)
T ss_pred ----CCHHHHHHhcCCCCe---EEEEECCCCCCCccCCHHHHHHHHHHcCC-----EEEEECCcCccccC----Cc-h--
Confidence 489999999987665 88888999999999999999999999999 99999999854321 11 1
Q ss_pred cccccEEEEcCCCCCCCCC-C-ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPM-P-CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~-~-~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
...+|+++.|++|+++++. . .|+++.++++.+.+.....+ .++. ..++.+|..++ +.+.+..++++
T Consensus 198 ~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~--------~g~~--~s~~~a~l~l~--~l~tL~~R~~~ 265 (398)
T PRK08249 198 ALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREI--------NGAT--MDPMSAYLILR--GMKTLKLRVRQ 265 (398)
T ss_pred hhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHh--------cCCC--CCHHHHHHHHh--CcchHHHHHHH
Confidence 1248999999999998643 2 46666665555544221111 1211 23455665555 45677888899
Q ss_pred HHHHHHHHHHHHHhcCCe
Q 011842 373 CLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~ 390 (476)
..++++.+.+.|++.+..
T Consensus 266 ~~~na~~la~~L~~~p~v 283 (398)
T PRK08249 266 QQESAMALAKYLQTHPKV 283 (398)
T ss_pred HHHHHHHHHHHHHcCCCe
Confidence 999999999999987654
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-17 Score=158.87 Aligned_cols=314 Identities=13% Similarity=0.147 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCccc
Q 011842 81 MAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYW 160 (476)
Q Consensus 81 ~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~ 160 (476)
+..|++.+++.++.+.. |||.. ..++-+++.+|.++-.+++..+.+
T Consensus 40 pp~i~~Al~~rvdhGvf---GY~~~-------------------------------~~~~~~ai~~w~~~r~~~~i~~e~ 85 (388)
T COG1168 40 PPEIIEALRERVDHGVF---GYPYG-------------------------------SDELYAAIAHWFKQRHQWEIKPEW 85 (388)
T ss_pred CHHHHHHHHHHHhcCCC---CCCCC-------------------------------CHHHHHHHHHHHHHhcCCCCCcce
Confidence 56788888888877765 66621 236888999999999999977788
Q ss_pred EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CC--CccCHHHHHHHHHcCCCCcEE
Q 011842 161 GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-IS--GEIDCADFKAKLLQNKDKPAI 237 (476)
Q Consensus 161 g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~--g~~D~~~Le~~l~~~~~~p~~ 237 (476)
.++++|...++..++++... |||.|++..+.|+.+.++....|=++...|+- .+ ..||.++||+++.+.. +.+
T Consensus 86 i~~~p~VVpgi~~~I~~~T~--~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~--vkl 161 (388)
T COG1168 86 IVFVPGVVPGISLAIRALTK--PGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER--VKL 161 (388)
T ss_pred EEEcCcchHhHHHHHHHhCc--CCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCC--ccE
Confidence 99999999999999998877 99999999999999999999999999999885 34 4579999999997653 227
Q ss_pred EEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc-cc-EEE-EcCCCCC-C
Q 011842 238 INVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP-IG-SVS-VSGHKFV-G 310 (476)
Q Consensus 238 vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~-~D-si~-~s~hK~l-~ 310 (476)
++..+|.|++|.+ +.|.+|.++|++||+ .+++|+.|+-.++...+|.+.....+. +| +++ .++.|.+ -
T Consensus 162 ~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v-----~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNl 236 (388)
T COG1168 162 FILCNPHNPTGRVWTKEELRKIAELCLRHGV-----RVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNL 236 (388)
T ss_pred EEEeCCCCCCCccccHHHHHHHHHHHHHcCC-----EEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccc
Confidence 7778899999998 679999999999999 999999999888766566554444443 33 444 3446644 5
Q ss_pred CCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHHH--HhChhcHHHHHHHHHHHHHHHHHHHHhc
Q 011842 311 CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN--RKGYKGFQKEVQKCLRNAHYLKDRLLDA 387 (476)
Q Consensus 311 ~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~--~~g~~g~~~~~~~~~~~a~~l~~~L~~~ 387 (476)
++..|+.++..++.. ..+........ .+. ...++.-+... ..|..-+.+..+.+..|.+++.+.|.+.
T Consensus 237 aGL~~a~~Ii~n~~lr~~~~~~l~~~~------~~~---~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~ 307 (388)
T COG1168 237 AGLKCAYIIISNRELRAKFLKRLKRNG------LHG---PSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH 307 (388)
T ss_pred hhhhheeEEecCHHHHHHHHHHHHHhc------CCC---CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899988887632 22221111111 111 22333333322 3366668889999999999999999985
Q ss_pred -CCeEeecC-CeeEEEEec---CCcHHHhhce-----eec--c-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 388 -GISAMLNE-LSSTVVFER---PQDEEFVRRW-----QLA--C-------QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 388 -g~~~~~~~-~~~iv~f~~---~~~~~~~~~~-----~l~--~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+...+..| ++-...+.. +-+++..++| .+. . +.+.+| ++..++++-++..++.|+...+
T Consensus 308 ~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~gf~R--lN~acpr~~L~eal~ri~~al~ 385 (388)
T COG1168 308 LPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGSGFVR--LNFACPRAILEEALERLKRALK 385 (388)
T ss_pred CCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCCceEE--EecCCCHHHHHHHHHHHHHHHh
Confidence 44444444 444444332 1222222222 221 1 125566 4556777777777777765544
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=169.98 Aligned_cols=213 Identities=16% Similarity=0.126 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~ 215 (476)
..+++.+.++++.|.+. .+++++|+.|+.+++.+... ||+.|+++.+.|.. +...++..|++++.++..
T Consensus 61 ~~~~Le~~lA~l~g~~~----~v~~~sG~~Ai~~~l~all~--pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~- 133 (405)
T PRK08776 61 TRDLLGEALAELEGGAG----GVITATGMGAINLVLNALLQ--PGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLT- 133 (405)
T ss_pred HHHHHHHHHHHHhCCCc----eEEEcCHHHHHHHHHHHHhC--CCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCC-
Confidence 34456677888888743 67888889998888777754 99999999999876 344455568888888753
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++|...... .+ +.
T Consensus 134 ----d~~~l~~~i~~~tk---lV~l~~P~NPtG~v~dl~~I~~la~~~gi-----~vIvD~a~a~~~~~----~p-l~-- 194 (405)
T PRK08776 134 ----DPRSLADALAQSPK---LVLIETPSNPLLRITDLRFVIEAAHKVGA-----LTVVDNTFLSPALQ----KP-LE-- 194 (405)
T ss_pred ----CHHHHHHhcCcCCe---EEEEECCCCCCCccCCHHHHHHHHHHcCC-----EEEEECCCcccccC----Cc-cc--
Confidence 89999999876654 88888999999999999999999999999 99999999753321 11 22
Q ss_pred ccccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
.++|+++.|+||+++++.+ .|+++.+++ +.+.+.....+. +.. ..++..|..++ +.+.++.++++
T Consensus 195 ~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~--------g~~--~s~~~a~l~~~--gl~tl~~r~~~ 262 (405)
T PRK08776 195 FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANAL--------GLT--GSPFDAFLTLR--GLRTLDARLRV 262 (405)
T ss_pred ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHh--hhCcHHHHHHH
Confidence 2489999999999987654 677777654 444332111111 111 13566666553 45678889999
Q ss_pred HHHHHHHHHHHHHhcCCe
Q 011842 373 CLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~ 390 (476)
..+++..+.+.|++.+..
T Consensus 263 ~~~na~~la~~L~~~p~v 280 (405)
T PRK08776 263 HQENADAIAALLDGHAAV 280 (405)
T ss_pred HHHHHHHHHHHHHcCCCe
Confidence 999999999999998643
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-17 Score=169.55 Aligned_cols=208 Identities=11% Similarity=0.085 Sum_probs=153.5
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCCcc
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g~~ 219 (476)
+++.++++.|.. .+++|+||++|+..++.+..+ |||+|+++++.|.+.... ....|+++..++.+
T Consensus 66 Le~~iA~le~~~----~~~~~~sG~~Ai~~~l~all~--~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~----- 134 (394)
T PRK09028 66 FQAAIVELEGGA----GTALYPSGAAAISNALLSFLK--AGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM----- 134 (394)
T ss_pred HHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC-----
Confidence 334466666553 288999999999998887765 999999999998776543 34568888877654
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
|.+.|++++.++++ +|++++++|++|.+.|+++|+++|++||+ +++||++|+.++.. .+ + .-++|
T Consensus 135 ~~e~l~~~l~~~Tk---lV~lespsNPtg~v~dl~~I~~la~~~g~-----~lvvD~t~a~p~~~----~P-l--~~GaD 199 (394)
T PRK09028 135 IGEGIRELIRPNTK---VLFLESPGSITMEVQDVPTLSRIAHEHDI-----VVMLDNTWASPINS----RP-F--EMGVD 199 (394)
T ss_pred CHHHHHHhcCcCce---EEEEECCCCCCCcHHHHHHHHHHHHHcCC-----EEEEECCccccccC----Cc-c--ccCce
Confidence 56789998877665 89999999999999999999999999999 99999999865321 10 1 22499
Q ss_pred EEEEcCCCCCCCCCC--ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHH
Q 011842 300 SVSVSGHKFVGCPMP--CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNA 377 (476)
Q Consensus 300 si~~s~hK~l~~p~~--~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a 377 (476)
++..|.|||++++.. .|+++.++++.+.+.....++ |.- ..+...|..++ |.+.+.-++++..+++
T Consensus 200 ivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~--------G~~--~~p~~a~l~~r--gl~TL~lR~~~~~~na 267 (394)
T PRK09028 200 ISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLM--------GQC--TSPDDVYLAMR--GLRTLGVRLAQHEKNA 267 (394)
T ss_pred EEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHc--ccCcHHHHHHHHHHHH
Confidence 999999999987632 455555554443332111121 211 23566665544 5677899999999999
Q ss_pred HHHHHHHHhcCC
Q 011842 378 HYLKDRLLDAGI 389 (476)
Q Consensus 378 ~~l~~~L~~~g~ 389 (476)
..+.+.|++.+.
T Consensus 268 ~~la~~L~~~p~ 279 (394)
T PRK09028 268 LKVANWLATRPE 279 (394)
T ss_pred HHHHHHHhcCCC
Confidence 999999999874
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=172.97 Aligned_cols=220 Identities=15% Similarity=0.093 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLI 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~ 215 (476)
...++++.++++.|.+. .++|++||.|+.+++.+... +|++|+++...|.+..... ...|++++.++.+
T Consensus 65 ~~~~le~~lA~l~g~~~----av~~sSGt~Al~~al~~ll~--~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~- 137 (433)
T PRK08134 65 TVAVLEERVAALEGGVG----AIATASGQAALHLAIATLMG--AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG- 137 (433)
T ss_pred HHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-
Confidence 34455566888888764 79999999999998877644 8999999999997654443 4479999999875
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|+++|+++|+++++ +|++.++++++|.+.|+++|+++|++||+ ++++|++|+.+... ....
T Consensus 138 ----d~~~l~~~i~~~Tk---lV~~e~~~np~g~v~Di~~I~~la~~~gi-----~livD~t~a~~~~~-------~pl~ 198 (433)
T PRK08134 138 ----DIDGWRAAIRPNTR---LLFGETLGNPGLEVLDIPTVAAIAHEAGV-----PLLVDSTFTTPYLL-------RPFE 198 (433)
T ss_pred ----CHHHHHHhcCCCCe---EEEEECCCcccCcccCHHHHHHHHHHcCC-----EEEEECCCcccccC-------Cchh
Confidence 89999999988776 78888999999999999999999999999 99999999765543 1122
Q ss_pred ccccEEEEcCCCCCCCCCC-ceeEEeeh-hh--h-----hhhcCC-ccc--c-CCCC--------------CcccCCCCC
Q 011842 296 KPIGSVSVSGHKFVGCPMP-CGVQITRM-EH--I-----NVLSSN-VEY--L-ASRD--------------ATIMGSRNG 348 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~-~G~l~~~~-~~--~-----~~l~~~-~~y--l-~~~~--------------~~~~~sr~~ 348 (476)
.++|+++.|.|||++++.. +|.+++.. .. . ..+... ..+ + ...+ ....|..
T Consensus 199 ~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~-- 276 (433)
T PRK08134 199 HGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGAC-- 276 (433)
T ss_pred cCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCC--
Confidence 3499999999999985432 45555432 11 0 000000 000 0 0000 0000111
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
..+...|.. ..|.+.+..++++..+++..+.+.|++.+.
T Consensus 277 ls~~~A~l~--~~gL~tl~~R~~~~~~nA~~la~~L~~~p~ 315 (433)
T PRK08134 277 LSPMNAWQL--LQGIETLPLRMERHVANTRKVVAFLASHPA 315 (433)
T ss_pred CCHHHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 123344433 346678999999999999999999998764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-17 Score=181.39 Aligned_cols=334 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred CCcHHHHHHHHHHHHhccc--ccccCCCCcCCcchHHH-HHHHHHhhCCCCCCcccCccc----hhhHHHHHHHHHHHHH
Q 011842 78 EAYMAGVLARYRKTLMERT--KHHLGYPYNLDFDYGAL-AQLQHFSINNLGDPFIESNYG----VHSRQFEVGVLDWFAR 150 (476)
Q Consensus 78 ~~~~~~il~~~~~~~~~~~--~~~~g~p~~~~~~~~~l-~~~l~~~~n~~g~~~~~~~~~----~~~~~le~~~~~~la~ 150 (476)
+.+-.++++++++....+. +.++|.-.+..+.++.+ ..++. +.+.-..++|+. .+.-+..-+...++++
T Consensus 57 ~~sE~e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~----~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~ 132 (954)
T PRK05367 57 ALSEAEALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILE----NPAWYTAYTPYQPEISQGRLEALLNFQTMVAD 132 (954)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHh----CcchhhccCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3456788999988866653 24566333333444544 33333 322111122332 2334555667799999
Q ss_pred HcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC--CcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCCccCHHHH
Q 011842 151 LWELENNEYWGYITNCGTEGNLHGILVGREVFP--DGILYASRESHYSVFKA----ARMYRMECVKVDCLISGEIDCADF 224 (476)
Q Consensus 151 l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p--~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g~~D~~~L 224 (476)
|.|++..+ ..++.++|.+.-..+++.+ ..+ +++|++++..|++.... ++..|++++.++.+.+ ++
T Consensus 133 LtG~~~an--aSl~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d--~~---- 203 (954)
T PRK05367 133 LTGLEIAN--ASLLDEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA--LD---- 203 (954)
T ss_pred HHCCChhh--ccccccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC--CC----
Confidence 99998643 7788888887664444433 334 38999999999987643 4667999999997542 11
Q ss_pred HHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEc
Q 011842 225 KAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVS 304 (476)
Q Consensus 225 e~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s 304 (476)
.. ..+.+ +..-++.+|.+.|+++|+++|+++|+ +++||+.+.+...... ...-++|+++.+
T Consensus 204 ------~~-~~~~v-lvq~p~~~G~i~d~~~i~~~ah~~Ga-----l~~vda~~~Al~~l~~------pge~GaDi~vgs 264 (954)
T PRK05367 204 ------HD-DVFGV-LLQYPGTSGEVRDYTALIAAAHARGA-----LVAVAADLLALTLLTP------PGEMGADIAVGS 264 (954)
T ss_pred ------cc-cEEEE-EEecCCCCeeeccHHHHHHHHHHcCC-----EEEEEehhhhccCCCC------hhhcCCCEEEee
Confidence 11 12334 44457889999999999999999999 9999997633222110 111249999999
Q ss_pred CCCCC-----CCCCCceeEEeehhhhhhhcCC-cc----------ccC---CCC---CcccCCCCChhH-----HHHHHH
Q 011842 305 GHKFV-----GCPMPCGVQITRMEHINVLSSN-VE----------YLA---SRD---ATIMGSRNGHAP-----IFLWYT 357 (476)
Q Consensus 305 ~hK~l-----~~p~~~G~l~~~~~~~~~l~~~-~~----------yl~---~~~---~~~~~sr~~~~~-----l~~~~~ 357 (476)
+|||+ |+| +.|++++++++.+.++.. .. |.. ... ....++.+.... +..+..
T Consensus 265 ~qkfg~P~g~GGP-~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y 343 (954)
T PRK05367 265 AQRFGVPMGFGGP-HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMY 343 (954)
T ss_pred CcccCCCCCCCCC-CEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 99994 333 599999999876655321 11 110 000 001122221111 222233
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHh-----hceeeccc-CCEEEEEEcCC
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFV-----RRWQLACQ-GNIAHVVVMPN 430 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l~~~-~~~lRv~~~~~ 430 (476)
+.++|.+|++++.++.+.++.|++++|++.|+....++...++.|..+ +..++. +++.+... .+.+|++++..
T Consensus 344 ~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~~~~~i~~~l~~~gi~~~~~~~~~l~is~~e~ 423 (954)
T PRK05367 344 AVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGGDAAAVLARALAAGINLRRVDDDHVGISLDET 423 (954)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCCCHHHHHHHHHHCCceeccccCCEEEEEeccc
Confidence 466899999999999999999999999887776543444567777765 223332 23444333 56799999999
Q ss_pred CCHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELI 444 (476)
Q Consensus 431 ~T~edid~~~~~l~ 444 (476)
+|++|||+|+++|.
T Consensus 424 ~t~~did~l~~~l~ 437 (954)
T PRK05367 424 TTREDLAALLAVFG 437 (954)
T ss_pred CCHHHHHHHHHHHc
Confidence 99999999999996
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=174.90 Aligned_cols=204 Identities=9% Similarity=-0.055 Sum_probs=139.7
Q ss_pred CCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHH-HHHcCC--CCC-cccEEEcCCchhHHHHHHH
Q 011842 101 GYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWF-ARLWEL--ENN-EYWGYITNCGTEGNLHGIL 176 (476)
Q Consensus 101 g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~l-a~l~g~--~~~-~~~g~~t~ggt~An~~al~ 176 (476)
|.|++.. + ..+.++..... |+. ++.+.+..++++++.+++ .+..+. .+. +..+++|+|+++|+..++.
T Consensus 108 g~p~~~~-~-~~v~e~~~~~~---~~~---Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~ 179 (527)
T PRK09275 108 DQLGFDA-D-EFVYELVDGII---GDN---YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFD 179 (527)
T ss_pred CCCCCCC-C-HHHHHHHHHHh---cCC---CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 6676544 2 34444444333 222 333446778999988744 443332 221 2369999999999998877
Q ss_pred HHH---hhCCCcEEEecCCCchHHHHHHHHcCCe--EEEEeCCC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc
Q 011842 177 VGR---EVFPDGILYASRESHYSVFKAARMYRME--CVKVDCLI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGA 249 (476)
Q Consensus 177 aa~---~~~p~~~Vl~s~~~H~S~~~~~~~~G~~--v~~v~~~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~ 249 (476)
+.. -..|||.|++.++.|..+...+++.|.. ++.++.++ ++.+|+++|++++.++++ +|++++|+||||.
T Consensus 180 aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tk---ai~l~nP~NPTG~ 256 (527)
T PRK09275 180 SLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIK---ALFLVNPSNPPSV 256 (527)
T ss_pred HHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCC---EEEEeCCcCCcCC
Confidence 521 1139999999999999999999988654 45555442 468999999998876665 7888899999999
Q ss_pred ccC---HHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCC-CCCCCceeEEeehh
Q 011842 250 VDD---LDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFV-GCPMPCGVQITRME 323 (476)
Q Consensus 250 id~---l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~ 323 (476)
+-+ +++|+++|++ +++ ||++|++|+.+... +.+.......--++..|+.|.+ +++|++|+++.+++
T Consensus 257 v~s~e~l~~I~~ia~~~~~~l-----~II~DEvY~~f~~~---~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 257 AMSDESLEKIADIVNEKRPDL-----MIITDDVYGTFVDD---FRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred CCCHHHHHHHHHHHHhcCCCc-----EEEECCCChhhccc---ccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence 966 7888888965 488 99999999865432 1111111111124456677766 69999999999875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=173.83 Aligned_cols=261 Identities=14% Similarity=0.039 Sum_probs=185.9
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~g 217 (476)
+++.+.++++.|.+. +++|+||++|+..++.+... ||+.|+++.+.|.+.. ..++.+|++++.++..
T Consensus 68 ~~Le~~lA~l~g~~~----~l~~~sgt~Ai~~~l~al~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~--- 138 (394)
T PRK07050 68 LALAQRLAEIEGGRH----ALLQPSGLAAISLVYFGLVK--AGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL--- 138 (394)
T ss_pred HHHHHHHHHHhCCCe----EEEeccHHHHHHHHHHHHhC--CCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC---
Confidence 456667888888653 89999999999999988765 9999999999998755 3567779999888753
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
+.++|++++.++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++|+.+... +. ++ .+
T Consensus 139 --~~~~l~~~i~~~tk---lV~le~p~Np~~~~~di~~I~~ia~~~gi-----~livD~a~a~~~~~--~~---l~--~G 201 (394)
T PRK07050 139 --IGAGIADLIQPNTR---LIWLEAPGSVTMEVPDVPAITAAARARGV-----VTAIDNTYSAGLAF--KP---FE--HG 201 (394)
T ss_pred --CHHHHHHhcCCCCe---EEEEECCCCCCccHhhHHHHHHHHHHcCC-----EEEEECCccccccc--CH---HH--cC
Confidence 55788888877665 88899999999999999999999999999 99999999764431 10 11 23
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+.+.|++|+++++.+ .|+++++++ +.+.+.....++. ++ ..+...|.+++ +.+.+..++++..
T Consensus 202 aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G-------~~---~~~~~a~l~lr--~l~tl~~Rl~~~~ 269 (394)
T PRK07050 202 VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLG-------IG---VSADDCSLVLR--GLPSLQVRLAAHD 269 (394)
T ss_pred CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcC-------CC---CCHHHHHHHHc--CCCcHHHHHHHHH
Confidence 79999999999986654 677777654 4444422222221 11 22445565554 4567888999999
Q ss_pred HHHHHHHHHHHhcCCe-EeecCCeeEEEEecCCcHHHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGIS-AMLNELSSTVVFERPQDEEFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~-~~~~~~~~iv~f~~~~~~~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+++..+.+.|++.+.. .+..|... ..|. .....+. ....++.+++.+....+.+++++|++.|+..
T Consensus 270 ~~a~~la~~L~~~p~v~~v~~p~l~----~~p~-~~~~~~~-~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~ 336 (394)
T PRK07050 270 RSALEVAEWLKARPEIATVLHPALP----DCPG-HAFWMRD-FTGAGGLFSVVFDERYSPAQVDAFVEALELF 336 (394)
T ss_pred HHHHHHHHHHHhCCCccEEECCCCC----CCcc-HHHHHHh-CCCCceEEEEEECCCCCHHHHHHHHHcCCCC
Confidence 9999999999987643 23333210 1111 1122221 1234567888888777899999999998754
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=161.67 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=217.2
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCC
Q 011842 133 YGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRM 206 (476)
Q Consensus 133 ~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~ 206 (476)
...+..++-.++.+||++..|++.- ..--+.|+++-++++++.|.. ..++++++++.+|...-..+.+.|+
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~Dav---sLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~ 179 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAV---SLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGF 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcee---eccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCc
Confidence 3446778999999999999999841 333467889999999888764 2457999999999999999999999
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 207 ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 207 ~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+|+.|+++++|.+|+++|++++.+++. .+.+|.|+|- |.+ .+|.+|+++.+++|. .+..|||---.++-.
T Consensus 180 ~VV~V~~~~~G~VDlddLk~k~~~~~A---alMiTnPsT~-GvFE~~I~ei~~ivH~~Gg-----~vY~DGANlNA~vG~ 250 (496)
T COG1003 180 KVVVVKCDENGNVDLDDLRAKAEDNLA---ALMITNPSTL-GVFEEDIREICEIVHEAGG-----QVYYDGANLNAIVGL 250 (496)
T ss_pred eEEEEecCCCCCccHHHHHHHhcccee---EEEeccCccc-ccchhhHHHHHHHHHHcCC-----EEEecCcchhhhhcc
Confidence 999999999999999999999986653 7888887755 777 579999999999999 999999953222211
Q ss_pred cccCCCCCCcccccEEEEcCCCCCCCC-----CCceeEEeehhhhhhhcCC------ccccCCCC--------CcccCCC
Q 011842 286 VKKAPKVSFKKPIGSVSVSGHKFVGCP-----MPCGVQITRMEHINVLSSN------VEYLASRD--------ATIMGSR 346 (476)
Q Consensus 286 ~~~~~~~~~~~~~Dsi~~s~hK~l~~p-----~~~G~l~~~~~~~~~l~~~------~~yl~~~~--------~~~~~sr 346 (476)
.+ .+.-++|++-++.||.+.+| +|.|-+.++..+..-++.. ..|....+ ..+.|+.
T Consensus 251 ~r-----PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~ 325 (496)
T COG1003 251 AR-----PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSA 325 (496)
T ss_pred cc-----ccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcc
Confidence 11 12234899999999998766 4566688887765544431 12221111 1122222
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC--------cHHHhh---
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ--------DEEFVR--- 412 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~--------~~~~~~--- 412 (476)
......|+.+..+|.+|+++.-+...-+|+|+..+|+.. +.++..+. ..-+++.... ..++.+
T Consensus 326 --~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~-y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLl 402 (496)
T COG1003 326 --SILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY-YPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLL 402 (496)
T ss_pred --hHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc-CccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHH
Confidence 123568999999999999999999999999999999862 22222222 3333443210 112222
Q ss_pred --ceeecc------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 413 --RWQLAC------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 413 --~~~l~~------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
+|+-++ -.+.+.|-.+..-|++++|+|+++|.+++++..+..
T Consensus 403 D~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 403 DYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred hcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 222221 235677777888899999999999999999987764
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=170.03 Aligned_cols=210 Identities=15% Similarity=0.093 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~~~ 216 (476)
.+++.+.+++++|.+. .+++++|+.|+..++. .. .+|+.|+++...|.+... .+...|++++.++.+
T Consensus 49 ~~~le~~la~l~g~~~----~l~~~sG~~al~~~l~-ll--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-- 119 (378)
T TIGR01329 49 RTALESLLAKLDKADR----AFAFSSGMAALDVITR-LL--NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-- 119 (378)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHH-Hh--CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence 4567777889998853 7778888887766554 33 389999999999987654 455679999999874
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++++++++++++ +|+++++++++|.+.|+++|+++|++||+ +++||++|+.+... .....
T Consensus 120 ---d~~~le~~i~~~tk---lv~le~psnptg~v~dl~~I~~la~~~g~-----~vivD~a~~~~~~~-------~~l~~ 181 (378)
T TIGR01329 120 ---DLDKVKAALGPKTK---LVLLESPTNPLQKIVDIRKISEMAHAQNA-----LVVVDNTMMSPLLC-------NPLEL 181 (378)
T ss_pred ---CHHHHHHhcCcCce---EEEEECCCCCCCeeecHHHHHHHHHHcCC-----EEEEECCCcccccC-------Chhhc
Confidence 89999999976665 88899999999999999999999999999 99999998654321 11112
Q ss_pred cccEEEEcCCCCCCCCCC--ceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMP--CGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~--~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|+++.|+|||+++|.+ .|+++++++. .+.+....... |.. ..+...|.. ..+.+.+..++++.
T Consensus 182 g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~--------G~~--~~~~~a~l~--~~~l~tl~~R~e~~ 249 (378)
T TIGR01329 182 GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNST--------GSG--LAPFDCWLL--LRGIKTLAIRIEKQ 249 (378)
T ss_pred CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhc--------CCc--CCHHHHHHH--HccCCCHHHHHHHH
Confidence 489999999999998866 8999887653 23332111111 111 112333433 33567889999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 011842 374 LRNAHYLKDRLLDAGI 389 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~ 389 (476)
.+++..+.+.|++.+.
T Consensus 250 ~~na~~la~~L~~~~~ 265 (378)
T TIGR01329 250 QENARAIAMFLSTHPR 265 (378)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998753
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-17 Score=166.41 Aligned_cols=282 Identities=13% Similarity=0.073 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCC------------eE
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM------------EC 208 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~------------~v 208 (476)
..++.+++++++|.+. ....++|+||++|+..++.+++...+..+|.+....|.+...+....|. ++
T Consensus 87 ~~~la~~l~~~~~~~~-~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (398)
T PRK03244 87 QIALAERLVELLGAPE-GGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGV 165 (398)
T ss_pred HHHHHHHHHHhCCCCC-CCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCc
Confidence 3577788888888542 1359999999999999999888732234444444444443333333332 23
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
..+|. .|++.|++.+.+ ++.+|++....+++|.+.| +++|.++|++||+ ++++|++|.++..
T Consensus 166 ~~~~~-----~d~~~l~~~~~~---~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~-----llI~DEv~~g~gr- 231 (398)
T PRK03244 166 EHVPY-----GDVDALAAAVDD---DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGA-----LLVLDEVQTGIGR- 231 (398)
T ss_pred eEeCC-----CCHHHHHHhhcC---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEeccccCCcc-
Confidence 33443 288999998853 3457777777899999987 8999999999999 9999999976422
Q ss_pred ccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 285 FVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 285 ~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
..+.. .+.... ..|.+++ .|+++.++++|+++.++++.+.+.... + ..++.+ .++.+.++++.+..
T Consensus 232 ~g~~~-~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~~~~~~~~~~~~~-~----~~t~~~-----~~~~~aaa~a~l~~ 298 (398)
T PRK03244 232 TGAWF-AHQHDGVTPDVVTL--AKGLGGGLPIGACLAFGPAADLLTPGL-H----GSTFGG-----NPVACAAALAVLDT 298 (398)
T ss_pred cchHH-hhhhhCCCCCEEEE--chhhhCCcccEEEEEcHHHHhhccCCC-C----cCCCCC-----CHHHHHHHHHHHHH
Confidence 11110 011111 2576655 599998899999999988766553210 1 112222 23344444444321
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEecCC--cHHH-----hhceeecc-cCCEEEEEEcCCCCH
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAM--LNELSSTVVFERPQ--DEEF-----VRRWQLAC-QGNIAHVVVMPNVTI 433 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~~~--~~~~-----~~~~~l~~-~~~~lRv~~~~~~T~ 433 (476)
-.-.+..++..++.++|++.|++.+...+ .....+++.+..+. ...+ .+++.+.. ..+.+|++++..+|+
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~~t~ 378 (398)
T PRK03244 299 IASEGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVAPDVIRLAPPLIITD 378 (398)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEeecCCCEEEEECCCcCCH
Confidence 11134567777888999999998654211 22234455554432 2222 23444433 347899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011842 434 DKLDDFLNELIENRSTW 450 (476)
Q Consensus 434 edid~~~~~l~~~~~~~ 450 (476)
+||++++++|+++.++.
T Consensus 379 ~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 379 AQVDAFVAALPAILDAA 395 (398)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988653
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=168.26 Aligned_cols=293 Identities=10% Similarity=-0.019 Sum_probs=184.5
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccE--EEcCCchhH--HHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEE
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWG--YITNCGTEG--NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECV 209 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g--~~t~ggt~A--n~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~ 209 (476)
..|..++++++.+|+.+..+...++..+ ..+.+|+.+ ...++.+... ||+.|++++++|..+...++..|++++
T Consensus 90 ~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~--pGd~Vlv~~P~y~~y~~~~~~~g~~~~ 167 (423)
T PLN02397 90 IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFY--PGSTIYIPNPTWGNHHNIFRDAGVPVR 167 (423)
T ss_pred cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHHcCCeEE
Confidence 4477899999999986543322111112 224444433 4444444444 999999999999999999999999999
Q ss_pred EEeC-C-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 210 KVDC-L-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 210 ~v~~-~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
.+|+ + +++.+|++.+++.+...+.+..+++.+++.|+||.+-+ +++|+++|++||+ |+++|++|..+.+.
T Consensus 168 ~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~-----~vI~De~Y~~l~~~ 242 (423)
T PLN02397 168 TYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNH-----LPFFDSAYQGFASG 242 (423)
T ss_pred EeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-----EEEEecccCCccCC
Confidence 9997 3 34789999999988754333457778889999999954 7788999999999 99999999877652
Q ss_pred cc--ccCCCCCCc-cc-ccEEEEcCCCCCC-CCCCceeEE--ee-hhhhhhh----cCCccccCCCCCcccCCCCChhHH
Q 011842 285 FV--KKAPKVSFK-KP-IGSVSVSGHKFVG-CPMPCGVQI--TR-MEHINVL----SSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 285 ~~--~~~~~~~~~-~~-~Dsi~~s~hK~l~-~p~~~G~l~--~~-~~~~~~l----~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
.. ...+...+. .. --++..|+.|.++ ++|++||++ .. .+.++.+ .....+. ..+. ..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~~ 312 (423)
T PLN02397 243 DLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPM-------YSNP---PIH 312 (423)
T ss_pred chhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcc-------cCCC---cHH
Confidence 10 111101111 11 1245567889887 799999985 43 3333222 1111111 1111 123
Q ss_pred HHHHHHHHhChh--------cHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeEEEEecCCcHHHhh----ceee
Q 011842 353 FLWYTLNRKGYK--------GFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEFVR----RWQL 416 (476)
Q Consensus 353 ~~~~~l~~~g~~--------g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~iv~f~~~~~~~~~~----~~~l 416 (476)
.++++...+... .+++..++..++++.+.+.|++.+ +....++++..++...+ .++.+ +..+
T Consensus 313 ~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~--~~~~~~Ll~~~~V 390 (423)
T PLN02397 313 GASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN--KEQVDRMTKEYHI 390 (423)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC--HHHHHHHHHhCCE
Confidence 444444433221 145667788889999999999986 43333444444444343 23433 2223
Q ss_pred cccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 417 ACQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 417 ~~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
...++. |+++. ..+.++|+.+++.|+++.
T Consensus 391 ~v~~~~-Ri~~~-~~~~~~i~~~~~~i~~~~ 419 (423)
T PLN02397 391 YMTRDG-RISMA-GLSSKNVPYLADAIHAVV 419 (423)
T ss_pred EECCCC-eEEEe-eCCHHHHHHHHHHHHHHH
Confidence 222222 88773 388999999999999885
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=169.45 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=154.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g~ 218 (476)
.+.+.++++.|.+. +++|+||+.|+..++.+... ||+.|+++++.|.+.... .+.+|+++..++.+
T Consensus 54 ~lE~~lA~l~g~~~----~~~~~sG~~Ai~~al~all~--~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~---- 123 (377)
T TIGR01324 54 ALQDAMCELEGGAG----CYLYPSGLAAVTNSILAFVK--AGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL---- 123 (377)
T ss_pred HHHHHHHHHhCCCc----EEEECcHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC----
Confidence 44445777788653 88999999999999887755 999999999988765543 35568888877543
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
+.+.|++++.++++ +|++++++|++|.+.|+++|+++|+++|+ +++||++|+.+.... ....++
T Consensus 124 -~~e~l~~~i~~~tk---lV~lesp~Np~g~~~dl~~I~~la~~~g~-----~livD~t~a~g~~~~-------pl~~ga 187 (377)
T TIGR01324 124 -IGEDIATLIQPNTK---VLFLEAPSSITFEIQDIPAIAKAARNPGI-----VIMIDNTWAAGLLFK-------PLEHGV 187 (377)
T ss_pred -CHHHHHHhcCCCce---EEEEECCCCCCCcHHHHHHHHHHHHHcCC-----EEEEECCCccccccC-------ccccCc
Confidence 23788888877665 89999999999999999999999999999 999999998655421 111248
Q ss_pred cEEEEcCCCCCCCCCC--ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHH
Q 011842 299 GSVSVSGHKFVGCPMP--CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRN 376 (476)
Q Consensus 299 Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~ 376 (476)
|+++.|.+||++++.+ .|+++.+++..+.+.. ..++ .|+- ..+...|..++ |.+.+..++++..++
T Consensus 188 Divv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~-~~~~-------~G~~--l~p~~a~~~~r--gl~tl~~R~~~~~~~ 255 (377)
T TIGR01324 188 DISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE-HSYL-------MGQM--VDADDAYTTLR--GLRTLGVRLKQHQES 255 (377)
T ss_pred eEEEecCceeccCCCCceEEEEEeCHHHHHHHHH-HHHH-------hCCC--CCHHHHHHHHh--hhhhHHHHHHHHHHH
Confidence 9999999999987644 5778777765444321 1121 1111 12455665555 446677789999999
Q ss_pred HHHHHHHHHhcCC
Q 011842 377 AHYLKDRLLDAGI 389 (476)
Q Consensus 377 a~~l~~~L~~~g~ 389 (476)
+..+.+.|++.+.
T Consensus 256 a~~la~~L~~~p~ 268 (377)
T TIGR01324 256 SLAIAKWLSEQPE 268 (377)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999764
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-17 Score=170.10 Aligned_cols=206 Identities=8% Similarity=-0.087 Sum_probs=139.0
Q ss_pred ccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHH-HHHHHHHHHHHHcCCC---CCcccEEEcCCchhHHHHH
Q 011842 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQ-FEVGVLDWFARLWELE---NNEYWGYITNCGTEGNLHG 174 (476)
Q Consensus 99 ~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~-le~~~~~~la~l~g~~---~~~~~g~~t~ggt~An~~a 174 (476)
..|.|++.. ...+.++....++ +.+ +.+.+..+ .|+.+.+++.+..+.. .++.++++|+|+++|+..+
T Consensus 100 ~~g~p~~~~--~~~~~~~~~~~~~---~~Y---~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 100 VIDQLGFDP--DAFLYEMCDGIIG---DNY---PVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred cCCCCCCCC--CHHHHHHHHHhhc---CCC---CCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 345666542 2445555554432 222 11223344 4444446777765432 2222699999999999988
Q ss_pred HHHHH---hhCCCcEEEecCCCchHHHHHHHHc--CCeEEEEeCCC--C-----CccCHHHHHHHHHcCCCCcEEEEEee
Q 011842 175 ILVGR---EVFPDGILYASRESHYSVFKAARMY--RMECVKVDCLI--S-----GEIDCADFKAKLLQNKDKPAIINVNI 242 (476)
Q Consensus 175 l~aa~---~~~p~~~Vl~s~~~H~S~~~~~~~~--G~~v~~v~~~~--~-----g~~D~~~Le~~l~~~~~~p~~vv~t~ 242 (476)
+.+.. -..||+.|++..+.|..+...+++. |++++.+++++ + +.+|.++|++++.++++ ++++++
T Consensus 172 ~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~k---ai~l~n 248 (521)
T TIGR03801 172 FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIK---ALFVVN 248 (521)
T ss_pred HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCc---EEEEeC
Confidence 76621 0139999999999999999988887 56777777753 2 67999999988766555 777789
Q ss_pred CCCccccccC---HHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCC-CCCCCce
Q 011842 243 GTTVKGAVDD---LDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFV-GCPMPCG 316 (476)
Q Consensus 243 gtt~tG~id~---l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l-~~p~~~G 316 (476)
|+||||.+-+ +++|+++|++| ++ ||++|++|+.+... ..+.......--+++.|+.|.+ +++|++|
T Consensus 249 P~NPTG~vls~e~l~~I~~ia~~~~~~l-----~II~DEvY~~f~~~---~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG 320 (521)
T TIGR03801 249 PSNPPSVAMSDESIEKIVDIVANDRPDL-----MILTDDVYGTFVDD---FRSLFAELPYNTIGVYSFSKYFGATGWRLG 320 (521)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCe-----EEEECCCchhhccc---ccchhhhCCCCEEEEEcchhhccCchhhhh
Confidence 9999999966 78888899987 88 99999999865432 1111121111124566778876 6899999
Q ss_pred eEEeehh
Q 011842 317 VQITRME 323 (476)
Q Consensus 317 ~l~~~~~ 323 (476)
+++.+++
T Consensus 321 ~i~~~~~ 327 (521)
T TIGR03801 321 TIALHKD 327 (521)
T ss_pred hhhcCch
Confidence 9999764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=170.51 Aligned_cols=270 Identities=15% Similarity=0.106 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc----hHHHHHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH----YSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H----~S~~~~~~~~G~~v~~v~~~ 214 (476)
....++++.++++.|.+. .+++++|++|+..++.+... ||+.|+++.+.+ ..+...++..|++++.++.+
T Consensus 45 p~~~~L~~~lA~l~g~~~----~v~~~sG~~ai~~~l~al~~--~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~ 118 (376)
T PRK06460 45 PTVLELTKKIVELENAEM----GVAFSSGMGAISTTALALLK--PGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPG 118 (376)
T ss_pred ccHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCC
Confidence 344456666888888864 56667788888888777655 899999987543 34557788889999888865
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+.+.+++.+.+++ .+|++++++|++|.+.|+++|+++|+++|+ ++++|++|+.+.. . ...
T Consensus 119 -----~~~~l~~~~~~~t---klV~l~sp~NPtG~v~d~~~I~~la~~~g~-----~vivDea~~~~~~-~------~~l 178 (376)
T PRK06460 119 -----SDNIIEKAKSKRY---DVVFVENITNPLLRVVDITELSKVCKENGS-----ILIVDATFSTPIN-Q------KPL 178 (376)
T ss_pred -----CHHHHHHhcCCCc---eEEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCcCcccc-C------Chh
Confidence 2344555444444 488889999999999999999999999999 9999999875321 1 111
Q ss_pred cccccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
...+|+++.|++|+++++. ..|+++.++++++.+.....+.. .+ ..+...|.+++ +.+.++.++++
T Consensus 179 ~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g-------~~---~~~~~a~~~l~--~~~~l~~r~~~ 246 (376)
T PRK06460 179 ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLG-------TS---LDPHAAYLTLR--GIKTLKIRMDV 246 (376)
T ss_pred hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcC-------CC---CCHHHHHHHHh--chhhHHHHHHH
Confidence 1237999999999987432 48888887776655532222211 11 11244454444 45667888999
Q ss_pred HHHHHHHHHHHHHhcCCe-EeecC-----------------CeeEEEEecCCc----HHHhhceee--------------
Q 011842 373 CLRNAHYLKDRLLDAGIS-AMLNE-----------------LSSTVVFERPQD----EEFVRRWQL-------------- 416 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~-~~~~~-----------------~~~iv~f~~~~~----~~~~~~~~l-------------- 416 (476)
..++++++.+.|++.+.. .+..| ...+++|...++ ..+.+++.+
T Consensus 247 ~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~ 326 (376)
T PRK06460 247 INRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVI 326 (376)
T ss_pred HHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEE
Confidence 999999999999987532 22211 135777876432 233333321
Q ss_pred --c-----------------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 417 --A-----------------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 417 --~-----------------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+ ...+.+|+++. -||.|.++++|+++.+.+
T Consensus 327 ~~p~~~~~~~~~~~~~~~~gi~~~liR~svG----lE~~~dl~~dl~~al~~~ 375 (376)
T PRK06460 327 SHPATMSHRTLSLEERKIVGITDSLLRLSVG----IEDVNDLIEDLDRALSTL 375 (376)
T ss_pred eCccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHHhh
Confidence 0 01256788876 567788888888877654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-17 Score=166.79 Aligned_cols=275 Identities=14% Similarity=0.052 Sum_probs=183.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELE-NNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~-~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++.+.+|+.+..|.+ .++.++++|+|+++++...+.+. .. +|+.|++++++|..+..+++.+|++++.++
T Consensus 63 G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~- 139 (364)
T PRK07865 63 GTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLG--PGDVVVIPELAYPTYEVGARLAGATVVRAD- 139 (364)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCC--CCCEEEECCCCcccHHHHHHhcCCEEEecC-
Confidence 56799999999999988865 44456999999999988765554 34 899999999999999999999999988775
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++++++. . .+.+|++++++|+||.+-+ +++|+++|++||+ ++++|++|+.+.+.. ....
T Consensus 140 ------~~~~l~~---~---~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~-~~~~ 201 (364)
T PRK07865 140 ------SLTELGP---Q---RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGA-----VVASDECYLELGWDA-EPVS 201 (364)
T ss_pred ------ChhhCCc---c---cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEecchhhhccCC-CCCc
Confidence 2333322 2 2347777889999998854 7889999999999 999999998654422 1111
Q ss_pred CCCC----cc-cccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-
Q 011842 291 KVSF----KK-PIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY- 363 (476)
Q Consensus 291 ~~~~----~~-~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~- 363 (476)
.+.. .. .-.+++.|+.|.+ ..++++|+++.++++++.+.....+.. .+. ..+.+.++...+..
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~-------~~~---~~~~q~~~~~~l~~~ 271 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRKHAG-------MMV---PAPVQAAMVAALGDD 271 (364)
T ss_pred cccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHHhcC-------CCc---CHHHHHHHHHHhCCH
Confidence 1110 01 1246778899987 578999999998877665532221110 011 12334444444432
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeE-EEEecCC-cHHHh-----hceee-c------ccCCEEEEEEcC
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSST-VVFERPQ-DEEFV-----RRWQL-A------CQGNIAHVVVMP 429 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~i-v~f~~~~-~~~~~-----~~~~l-~------~~~~~lRv~~~~ 429 (476)
+.+++..+...++++++.+.|++.|+... .+.+++ +.+..+. ..++. ++..+ + ...+++|+++..
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~ 350 (364)
T PRK07865 272 AHVREQRERYARRRAVLRPALEAAGFRVD-HSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA 350 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccc-CCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC
Confidence 33556677778888999999998875433 343443 3333332 22222 22222 1 124689999874
Q ss_pred CCCHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELI 444 (476)
Q Consensus 430 ~~T~edid~~~~~l~ 444 (476)
+++++++.++.|+
T Consensus 351 --~~~~~~~~~~~l~ 363 (364)
T PRK07865 351 --TDERIAAAVERLA 363 (364)
T ss_pred --CHHHHHHHHHHhh
Confidence 5899999988774
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=167.26 Aligned_cols=261 Identities=13% Similarity=0.022 Sum_probs=179.0
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
.++++++++++|.+++ ..++|+|+++++.....+ .. ++ .|++.+++|.++...++..|++++.++ |+
T Consensus 50 ~~lr~~la~~~~~~~~--~i~~t~G~~~~i~~~~~~-l~--~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~-------d~ 116 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA--SVLPVNGAQEAIYLLPRL-LA--PG-RVLVLAPTYSEYARAWRAAGHEVVELP-------DL 116 (330)
T ss_pred HHHHHHHHHHhCCChh--hEEECCCHHHHHHHHHHH-hC--CC-eEEEeCCCcHHHHHHHHHcCCEEEEeC-------CH
Confidence 3555667777787643 488999999888775433 33 66 688889999999999999999998887 88
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc--c
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK--K 296 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~--~ 296 (476)
+.|++.+. .++ ++++++++|++|.+-+ +++|+++|++||+ ++++|++|..+... . +..+.. .
T Consensus 117 ~~l~~~~~-~~~---~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~-----~ii~De~y~~~~~~-~---~~~~~~~~~ 183 (330)
T TIGR01140 117 DRLPAALE-ELD---VLVLCNPNNPTGRLIPPETLLALAARLRARGG-----WLVVDEAFIDFTPD-A---SLAPQAARF 183 (330)
T ss_pred HHHHhhcc-cCC---EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCC-----EEEEECcccccCCc-c---chhhHhccC
Confidence 99998883 343 6777889999999988 7778888899999 99999999765432 1 111111 1
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH-HHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF-QKEVQKCL 374 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~-~~~~~~~~ 374 (476)
.-+++..+++|+++ .++++|++++++++++.+...... .. ...+.+.++.+.+....+ +...++..
T Consensus 184 ~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~-------~~-----~s~~~q~~~~~~l~~~~~~~~~~~~~~ 251 (330)
T TIGR01140 184 PGLVVLRSLTKFFGLAGLRLGFVVAHPALLARLREALGP-------WT-----VNGPARAAGRAALADTAWQAATRARLA 251 (330)
T ss_pred CCEEEEEecchhhcCchhhhhheeCCHHHHHHHHhcCCC-------CC-----chHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 24578889999987 668999999998876665322111 01 123445555555543333 56678888
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeecc-------cCCEEEEEEcCCCCHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~ 442 (476)
++++++.+.|++.+.....++.++.+.+..++..++.+ ++.+.. ..+.+|+++. +..++ ++|+.+
T Consensus 252 ~~~~~l~~~L~~~~~~~~~~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~~~ 328 (330)
T TIGR01140 252 AERARLAALLARLGGLEVVGGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLEEA 328 (330)
T ss_pred HHHHHHHHHHHhCCCceECCCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHHHh
Confidence 89999999999987544445555555566555444432 222211 2367898875 33355 888887
Q ss_pred H
Q 011842 443 L 443 (476)
Q Consensus 443 l 443 (476)
|
T Consensus 329 l 329 (330)
T TIGR01140 329 L 329 (330)
T ss_pred h
Confidence 6
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=177.82 Aligned_cols=336 Identities=12% Similarity=0.045 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHHhcccc--cccCCCCcCCcchHHH-HHHHHHhhCCCCCCcccCccc----hhhHHHHHHHHHHHHH
Q 011842 78 EAYMAGVLARYRKTLMERTK--HHLGYPYNLDFDYGAL-AQLQHFSINNLGDPFIESNYG----VHSRQFEVGVLDWFAR 150 (476)
Q Consensus 78 ~~~~~~il~~~~~~~~~~~~--~~~g~p~~~~~~~~~l-~~~l~~~~n~~g~~~~~~~~~----~~~~~le~~~~~~la~ 150 (476)
+.+-.+++..+++....+.. +++|--.+..+.++.+ ..++.. .+.-..++||. .+.-+.-.+...++++
T Consensus 84 ~~sE~e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~----~~~~TaytPYqaEisQG~lqal~~~Qt~ia~ 159 (993)
T PLN02414 84 GLTESQMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILEN----PGWYTQYTPYQAEIAQGRLESLLNYQTMITD 159 (993)
T ss_pred CCCHHHHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhC----hHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887655432 3455222222233444 333332 11111112222 2444556678899999
Q ss_pred HcCCCCCcccEEEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCccCHHHHH
Q 011842 151 LWELENNEYWGYITNCGTEGNLHGILVGREV-FPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGEIDCADFK 225 (476)
Q Consensus 151 l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~~D~~~Le 225 (476)
|+|++.++ ..++.++|.+.-.++++.+.. .++++|++++..|++....+ +..|++++.++.+.. |
T Consensus 160 LtG~~~an--aSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~----- 229 (993)
T PLN02414 160 LTGLPMSN--ASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D----- 229 (993)
T ss_pred HhCCChhh--EeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c-----
Confidence 99998654 888999988877655554321 23478999999999876444 446999999987421 1
Q ss_pred HHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEc
Q 011842 226 AKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVS 304 (476)
Q Consensus 226 ~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s 304 (476)
...+. ...++.+-++.+|.+.|+++|+++|+++|+ +++| +++..+..+.. +..+ ++|+++.+
T Consensus 230 ----~~~~~-v~~vlvq~P~~~G~v~dv~~I~~~ah~~Ga-----L~iV-aad~lal~~l~------~pge~GADi~vgs 292 (993)
T PLN02414 230 ----YSSGD-VCGVLVQYPATDGEVLDYAEFVKNAHANGV-----KVVM-ATDLLALTMLK------PPGEWGADIVVGS 292 (993)
T ss_pred ----cccCc-eEEEEEecCCCCeEEcCHHHHHHHHHHcCC-----EEEE-EECHHHhcCCC------CHhhccCcEEEEC
Confidence 11111 233345566789999999999999999999 9999 77754443311 1223 49999999
Q ss_pred CCCCC-----CCCCCceeEEeehhhhhhhcC-CccccCCCC--C--------------cccCCCCChhHHHHHHHH----
Q 011842 305 GHKFV-----GCPMPCGVQITRMEHINVLSS-NVEYLASRD--A--------------TIMGSRNGHAPIFLWYTL---- 358 (476)
Q Consensus 305 ~hK~l-----~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~--~--------------~~~~sr~~~~~l~~~~~l---- 358 (476)
+|||+ ++|. .|++++++++.+.++. ...+-...+ . .-.++.+.....++++.+
T Consensus 293 gqKwg~P~G~GGP~-aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y 371 (993)
T PLN02414 293 AQRFGVPMGYGGPH-AAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMY 371 (993)
T ss_pred CCccccCCCCCCCC-eeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHH
Confidence 99998 4444 8999999987654431 111100000 0 002233322223333333
Q ss_pred -HHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeeccc-CCEEEEEEcCCC
Q 011842 359 -NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLACQ-GNIAHVVVMPNV 431 (476)
Q Consensus 359 -~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~~-~~~lRv~~~~~~ 431 (476)
.++|..|++++.+++++++.+++++|++.|+....++...++.|..+.+.++. +++.+... .+.+|++++..+
T Consensus 372 ~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~~~~~v~~~L~~~gI~l~~~~~~~lrvs~~e~~ 451 (993)
T PLN02414 372 AVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCSDADAIADAAAKVGINLRVVDANTVTVSFDETT 451 (993)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecCCHHHHHHHHHHCCCeeEEecCCeEEEEeeccC
Confidence 45688999999999999999999999998876555555678888876544333 23333322 467999999999
Q ss_pred CHHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELIE 445 (476)
Q Consensus 432 T~edid~~~~~l~~ 445 (476)
|++|||+|+++|..
T Consensus 452 T~edId~L~~~l~~ 465 (993)
T PLN02414 452 TLEDVDKLFKVFAG 465 (993)
T ss_pred CHHHHHHHHHHHcc
Confidence 99999999999964
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-18 Score=171.68 Aligned_cols=209 Identities=15% Similarity=0.114 Sum_probs=152.4
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH---HHcCCeEEEEeCCCCCc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA---RMYRMECVKVDCLISGE 218 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~---~~~G~~v~~v~~~~~g~ 218 (476)
+++.+.+++++|.+. .++++||+.|+..++.+... ||+.|+++.+.|.+....+ +..|++++.+.
T Consensus 56 ~~lE~~lA~l~g~~~----~l~~~sG~~Ai~~~l~~ll~--~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~------ 123 (385)
T PRK08574 56 RPLEEALAKLEGGVD----ALAFNSGMAAISTLFFSLLK--AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY------ 123 (385)
T ss_pred HHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC------
Confidence 345555788888753 78889999999998887755 8999999999999876655 34577777654
Q ss_pred cCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 219 IDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 219 ~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.|+++|++++.+ +++ +|++.+++|++|.+.|+++|+++|+++|+ ++++|++|+.+... +. + ..+
T Consensus 124 ~d~~~l~~~i~~~~tk---lV~ie~p~NPtG~v~dl~~I~~la~~~gi-----~livD~t~a~~~~~--~~---l--~~G 188 (385)
T PRK08574 124 PSTEDIIEAIKEGRTK---LVFIETMTNPTLKVIDVPEVAKAAKELGA-----ILVVDNTFATPLLY--RP---L--RHG 188 (385)
T ss_pred CCHHHHHHhcCccCce---EEEEECCCCCCCEecCHHHHHHHHHHcCC-----EEEEECCCCccccC--Ch---h--hhC
Confidence 268899999876 554 77789999999999999999999999999 99999999754321 00 1 124
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+++.|++||+++|-. .|++++++ ++.+.+.....++ +.. ..++..|..++ +.+.+..++++..
T Consensus 189 aDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~--------g~~--~~p~~a~l~l~--~l~tL~~R~~~~~ 256 (385)
T PRK08574 189 ADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRL--------GTI--MQPFEAYLVLR--GLKTLEVRFERQC 256 (385)
T ss_pred CcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHc--ccCcHHHHHHHHH
Confidence 89999999999987653 46566654 4444332111111 111 12344454444 4567888999999
Q ss_pred HHHHHHHHHHHhcCC
Q 011842 375 RNAHYLKDRLLDAGI 389 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~ 389 (476)
+++.++.+.|++.+.
T Consensus 257 ~na~~la~~L~~~p~ 271 (385)
T PRK08574 257 RNAMAIAEFLSEHPK 271 (385)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=160.42 Aligned_cols=283 Identities=18% Similarity=0.191 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~ 212 (476)
....||++ .|+++|-+. |.|+++||++|++++++-+.+ |+.+||+.+.+|.-..+ .+.+.|+.++.+.
T Consensus 57 tt~rLE~~----vA~l~GKEA----gLFv~SGTmgNllaIm~Hc~~-rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~ 127 (384)
T KOG1368|consen 57 TTNRLEQR----VAELFGKEA----GLFVPSGTMGNLLAIMVHCHQ-RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVK 127 (384)
T ss_pred cHHHHHHH----HHHHhCccc----eeeecccccccHHHHHHHhcC-CCceEEeccchheeehhccChhhhccceeEeee
Confidence 45677776 566777765 899999999999999998874 88999999999965443 3455688899998
Q ss_pred CCCCCccCHHHHHHHHHcCC-C--Cc--EEEEEeeCCCccc-cccCH---HHHHHHHHHhCCCCCceEEEEecCc--ccc
Q 011842 213 CLISGEIDCADFKAKLLQNK-D--KP--AIINVNIGTTVKG-AVDDL---DLVIQTLEESGFTQDRFYIHCDGAL--FGL 281 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~-~--~p--~~vv~t~gtt~tG-~id~l---~~I~~ia~~~g~~~~~~~lhvD~a~--~g~ 281 (476)
..++|.||++++|+++.... + .| .+|++.+-.+.+| .+-|| ++|.++|++||+ -+|+|||- .+.
T Consensus 128 ~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~gl-----kLH~DGARi~NAa 202 (384)
T KOG1368|consen 128 NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGL-----KLHMDGARIFNAA 202 (384)
T ss_pred eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCC-----eeecchhhhhhHH
Confidence 88899999999999998432 1 12 3666665555566 66665 567789999999 99999994 222
Q ss_pred cccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 282 MMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
+... .. .-.....+||+++.+.|.+++|.|+ +++.+.++++... ++. ..+.|+-+.. .+-..+++-++
T Consensus 203 vasg-V~--vk~i~~~fDSVsiCLSKglgAPVGS-ViVG~k~FI~kA~----~~R---KalGGGmRQs-GvLaaaaLval 270 (384)
T KOG1368|consen 203 VASG-VP--VKKICSAFDSVSICLSKGLGAPVGS-VIVGSKDFIDKAR----HFR---KALGGGMRQS-GVLAAAALVAL 270 (384)
T ss_pred HHcC-CC--HHHHHHhhhhhhhhhhccCCCCccc-EEEccHHHHHHHH----HHH---HHhcCchhHH-HHHHHHHHHHh
Confidence 2111 00 0111233899999999999998753 4445555543221 110 1223322211 12222333333
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ec-CCeeEEEEec--C--CcHHHhhce---e--e-cccCCEEEEEEcC
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAM-LN-ELSSTVVFER--P--QDEEFVRRW---Q--L-ACQGNIAHVVVMP 429 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~-~~~~iv~f~~--~--~~~~~~~~~---~--l-~~~~~~lRv~~~~ 429 (476)
. +.+. .+++.+++|+.+.+.++..+...+ .+ -.+|++.+.. + ..+++.+.+ . + .....++|++++.
T Consensus 271 ~-~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s~r~Rivlh~ 348 (384)
T KOG1368|consen 271 D-ENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGGASRRIRIVLHH 348 (384)
T ss_pred h-cchH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeeccccceEEEEEE
Confidence 2 2333 667778888888888888773333 33 4578877543 2 233443322 1 1 2234568999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIEN 446 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~ 446 (476)
.+|.++++.++..+.+.
T Consensus 349 Qvt~~~ve~~~~~~~k~ 365 (384)
T KOG1368|consen 349 QVTDEDVEYVKSVLSKK 365 (384)
T ss_pred ecCHHHHHHHHHHHHHH
Confidence 99999999999999643
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=169.12 Aligned_cols=226 Identities=14% Similarity=0.144 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH----HHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV----FKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v~~~~~ 216 (476)
..++.+.++++.|.+. .++++||+.|+..++ .+.. +|+.|+++.+.|.+. ...++..|++++.++..
T Consensus 54 ~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~-~ll~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 124 (366)
T PRK08247 54 RGVLEQAIADLEGGDQ----GFACSSGMAAIQLVM-SLFR--SGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA-- 124 (366)
T ss_pred HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHH-HHhC--CCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCC--
Confidence 4456666888899864 688999998887654 3443 899999999988753 44556689999988864
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++|++++.++++ +|++++++|++|.+.++++|+++|++||+ ++++|++|+..+... + + ..
T Consensus 125 ---d~~~l~~~i~~~tk---lv~le~P~NP~~~~~dl~~I~~la~~~g~-----~lIvD~t~~~~~~~~----p-~--~~ 186 (366)
T PRK08247 125 ---SLKAIEQAITPNTK---AIFIETPTNPLMQETDIAAIAKIAKKHGL-----LLIVDNTFYTPVLQR----P-L--EE 186 (366)
T ss_pred ---CHHHHHHhcccCce---EEEEECCCCCCCcHHHHHHHHHHHHHcCC-----EEEEECCCccccccC----c-h--hc
Confidence 89999999977665 88888999999999999999999999999 999999996543311 1 1 12
Q ss_pred cccEEEEcCCCCCCCCC--CceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPM--PCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~--~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
.+|+++.|++|+++++. ..|+++.++ ++.+.+.....+. +.. ..++.+|..++ +.+.+..++++.
T Consensus 187 g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~--------g~~--~s~~~a~l~~~--~l~tl~~r~~~~ 254 (366)
T PRK08247 187 GADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA--------GAV--LSPFDSWLLIR--GMKTLALRMRQH 254 (366)
T ss_pred CCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhc--------CCC--CChHHHHHHHh--ccCcHHHHHHHH
Confidence 48999999999998643 468777764 3444332111121 111 12355666655 345677888888
Q ss_pred HHHHHHHHHHHHhcCC-eEeecC-CeeEEEEecC
Q 011842 374 LRNAHYLKDRLLDAGI-SAMLNE-LSSTVVFERP 405 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~-~~~~~~-~~~iv~f~~~ 405 (476)
.++++.+.+.|++.+. ..+..| ...+++|...
T Consensus 255 ~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 255 EENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred HHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEEC
Confidence 9999999999999754 334344 5677778754
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=170.49 Aligned_cols=211 Identities=14% Similarity=0.110 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc----hHHHHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH----YSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H----~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
.+++.+.++++.|.+. .+++++|+.|+..++.+... +|+.|+++...| ..+...++..|++++.++.+
T Consensus 72 ~~~le~~lA~l~g~~~----al~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-- 143 (403)
T PRK07810 72 VSMFEERLRLIEGAEA----CFATASGMSAVFTALGALLG--AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-- 143 (403)
T ss_pred HHHHHHHHHHHhCCCc----EEEECChHHHHHHHHHHHhC--CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC--
Confidence 3345556788888763 89999999999988877655 899999988665 23345667789999999864
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++++++|.++++ +|+++++++++|.+.|+++|+++|+++|+ ++++|++|+.+.... . + ..
T Consensus 144 ---d~~~l~~ai~~~tk---lV~~esp~Nptg~v~dl~~I~~la~~~g~-----~vivD~a~a~~~~~~--~---~--~~ 205 (403)
T PRK07810 144 ---DLSQWEEALSVPTQ---AVFFETPSNPMQSLVDIAAVSELAHAAGA-----KVVLDNVFATPLLQR--G---L--PL 205 (403)
T ss_pred ---CHHHHHHhcCcCce---EEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCCccccCC--h---h--hc
Confidence 89999999987765 88889999999999999999999999999 999999997554321 0 1 12
Q ss_pred cccEEEEcCCCCCCCC-CC-ceeEEeehhhhh-hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCP-MP-CGVQITRMEHIN-VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p-~~-~G~l~~~~~~~~-~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|+++.|++|++++. .. .|+++.+++.+. .+. .+... .+.. ..++.+|..++ +.+.+..++++.
T Consensus 206 gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~---~~~~~-----~g~~--~s~~~a~l~l~--~L~tl~~R~~~~ 273 (403)
T PRK07810 206 GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQ---KLMRH-----TGPA--LSAFNAWVLLK--GLETLALRVRHS 273 (403)
T ss_pred CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHH---HHHHH-----hCCC--CCHHHHHHHHh--ccCcHHHHHHHH
Confidence 4899999999999753 23 477777766443 221 11110 1111 23566666555 457789999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 011842 374 LRNAHYLKDRLLDAGI 389 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~ 389 (476)
.+++.++.+.|++.+.
T Consensus 274 ~~~a~~~a~~L~~~p~ 289 (403)
T PRK07810 274 NASALRIAEFLEGHPA 289 (403)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-17 Score=179.65 Aligned_cols=288 Identities=11% Similarity=0.104 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 138 RQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
.++.+++++|+++.+|++.+. .++++|+|+++++..++.+..+ ||+.|+++.++|+.+...+++.|++++.+|+++
T Consensus 733 pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~--pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e 810 (1082)
T PLN02672 733 TDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQ--EGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSS 810 (1082)
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEecccc
Confidence 467889999999999998642 3578888888777777777766 999999999999999999999999999999963
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCC-Ccccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGT-TVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gt-t~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|++.|++++.+.+. + +|++++|+ ||||.+- .+++|+++|++||+ +|++|++|+...+......
T Consensus 811 ~gf~lD~d~Le~al~~~~~-~-~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di-----~VIsDEaYsdL~Fd~~~~s- 882 (1082)
T PLN02672 811 DGFKLTAKTLASTLETVKK-P-WVYISGPTINPTGLLYSNSEIEEILSVCAKYGA-----RVIIDTSFSGLEYDTSGWG- 882 (1082)
T ss_pred cCCCCCHHHHHHHhccCCC-C-EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCC-----EEEEeCCCCccccCCCCCc-
Confidence 467899999999865322 1 56677786 9999984 57888899999999 9999999986655321110
Q ss_pred CCCCc----------c--cccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 291 KVSFK----------K--PIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 291 ~~~~~----------~--~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
..+.. . .+-++..-++||+++++++||++++++ +++.+.....+.. ......+.+.++
T Consensus 883 ~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~---------~~~~~q~Aaaaa 953 (1082)
T PLN02672 883 GWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSR---------PHSTLKYTIKKL 953 (1082)
T ss_pred ccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcC---------CCcHHHHHHHHH
Confidence 00110 0 122222334579999999999999765 6665532211110 000112333333
Q ss_pred HHHhC------hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC---------------------CcHHH
Q 011842 358 LNRKG------YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP---------------------QDEEF 410 (476)
Q Consensus 358 l~~~g------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~---------------------~~~~~ 410 (476)
+..+. .+.+++..+.+.++++++.+.|++.|+. +.+|..+++.|..+ ++.++
T Consensus 954 lall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~-v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~ef 1032 (1082)
T PLN02672 954 LGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWD-VLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNI 1032 (1082)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCe-EecCCcEEEEEEEccccccccccccccccccccCCCHHHH
Confidence 32221 1234556667788999999999998875 44555555444321 11222
Q ss_pred ----hhc--eeecc-----cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 411 ----VRR--WQLAC-----QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 411 ----~~~--~~l~~-----~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
.++ ..+.. ..+++|+++. .++++++..++.|++..
T Consensus 1033 ae~LLee~GVaV~PGs~FG~~g~~RIsfa--~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672 1033 REAILKSTGLCINSSSWTGIPGYCRFSFA--LEDSEFDRALKAIARFK 1078 (1082)
T ss_pred HHHHHHcCCEEEecCcccCCCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 222 22221 1368999886 47889999999988754
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=170.44 Aligned_cols=269 Identities=15% Similarity=0.141 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH----HHHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV----FKAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v~~~ 214 (476)
...+++.+.++++.|.+. .+++++|+.|+..++. ... +|+.|+++++.|.+. ...++..|++++.++.+
T Consensus 54 p~~~~le~~lA~l~g~~~----~v~~~sG~~ai~~~l~-~l~--~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 54 PTREALEDIIAELEGGTK----GFAFASGMAAISTAFL-LLS--KGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred hhHHHHHHHHHHHhCCCC----eEEECCHHHHHHHHHH-HhC--CCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 334455666888888763 5677788888776664 333 899999999988643 35566789999999874
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|++++++++.++++ +|++++++|++|.+.|+++|.++|+++|+ ++++|++|+.+.... + +
T Consensus 127 -----d~~~l~~~l~~~tk---lV~l~~p~NptG~~~dl~~I~~la~~~g~-----~vvvD~a~~~~~~~~----~-~-- 186 (390)
T PRK08064 127 -----NLEEVAQNIKPNTK---LFYVETPSNPLLKVTDIRGVVKLAKAIGC-----LTFVDNTFLTPLLQK----P-L-- 186 (390)
T ss_pred -----CHHHHHHhcCCCce---EEEEECCCCCCcEeccHHHHHHHHHHcCC-----EEEEECCCCcccccC----c-h--
Confidence 78999999977665 88899999999999999999999999999 999999987543320 0 1
Q ss_pred cccccEEEEcCCCCCCCCCC--ceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..++|+++.|+|||++++.+ .|++++++ ++.+.+....... ... ..+...|..+ .|.+.+..+++
T Consensus 187 ~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~-------g~~---~~~~~a~l~~--~gl~tl~~R~~ 254 (390)
T PRK08064 187 DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSF-------GAV---LGVQDCWLVL--RGLKTLHVRLE 254 (390)
T ss_pred hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhc-------CCC---CCHHHHHHHH--cccCcHHHHHH
Confidence 12489999999999987776 58888775 4544442111110 111 1234455433 45566788999
Q ss_pred HHHHHHHHHHHHHHhcCCe-Ee-ec-----C-----------CeeEEEEecCCcH---HHhhceeec-------------
Q 011842 372 KCLRNAHYLKDRLLDAGIS-AM-LN-----E-----------LSSTVVFERPQDE---EFVRRWQLA------------- 417 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~-~~-~~-----~-----------~~~iv~f~~~~~~---~~~~~~~l~------------- 417 (476)
+..+++..+.+.|++.+.. .+ .+ | ...+++|...+.+ .|.+.+.+.
T Consensus 255 ~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~ 334 (390)
T PRK08064 255 HSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESIL 334 (390)
T ss_pred HHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCccee
Confidence 9999999999999987632 12 11 1 1357888775321 233333320
Q ss_pred --------------------ccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 --------------------CQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 --------------------~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
...+.+|+|+....+++.|+.|.++|+++
T Consensus 335 ~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 335 SYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred ECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 01257899999888888888888888753
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=172.10 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CC-
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-IS- 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~- 216 (476)
..-.+..+.+|+++|.+.. -++|+|+|.+|..++.++.. ||+.|++++..|-|+..++.+.|+.+++++.. +.
T Consensus 66 G~I~eAe~~aA~~fGAd~t---~flvnGsT~g~~a~i~a~~~--~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~ 140 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKT---FFLVNGSTSGNQAMIMALCR--PGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEY 140 (417)
T ss_dssp THHHHHHHHHHHHHTESEE---EEESSHHHHHHHHHHHHHTT--TTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TT
T ss_pred cHHHHHHHHHHHhcCCCeE---EEEecCchHHHHHHHHHhcC--CCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCcccc
Confidence 4556777889999999853 67788999999999999887 99999999999999999999999999988764 21
Q ss_pred ---CccCH-----HHHHHHHHcCCC--CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 217 ---GEIDC-----ADFKAKLLQNKD--KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 217 ---g~~D~-----~~Le~~l~~~~~--~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+.+++ +.++++|+++.. .+.+|++|++ |+.|.+.|+++|+++|+++++ .|+||+|||+......
T Consensus 141 gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~-----~llvDEAhGah~~F~~ 214 (417)
T PF01276_consen 141 GIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGI-----PLLVDEAHGAHFGFHP 214 (417)
T ss_dssp S-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTEC-----EEEEE-TT-TTGGCSG
T ss_pred CCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcccCC-----EEEEEccccccccCCC
Confidence 34666 999999998753 2456777755 578999999999999999999 9999999987654321
Q ss_pred ccCCCCCCccccc-------EEEEcCCCCCCCCCCceeEEeehhh-h--hhhcCCccccCCCCCcccCCCCChhH-HHHH
Q 011842 287 KKAPKVSFKKPIG-------SVSVSGHKFVGCPMPCGVQITRMEH-I--NVLSSNVEYLASRDATIMGSRNGHAP-IFLW 355 (476)
Q Consensus 287 ~~~~~~~~~~~~D-------si~~s~hK~l~~p~~~G~l~~~~~~-~--~~l~~~~~yl~~~~~~~~~sr~~~~~-l~~~ 355 (476)
-+. -....++| .++-|.||.+.+-..++++.+++.. + +.+......+.++ -+.-.. .++-
T Consensus 215 lp~--~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TT-------SPSY~lmASlD 285 (417)
T PF01276_consen 215 LPR--SALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTT-------SPSYPLMASLD 285 (417)
T ss_dssp GGT--TCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-S-------S--HHHHHHHH
T ss_pred Ccc--chhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCC-------ChHHHHHHHHH
Confidence 111 12223367 9999999999999999999999864 2 2222111111111 111111 1122
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHh
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 386 (476)
.+.+.+....-++.+++..++++.|+++|++
T Consensus 286 ~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~ 316 (417)
T PF01276_consen 286 VARAQMEEEEGRELLEEAIELAEEFRKKINR 316 (417)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 2223331223367788888999999999943
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-17 Score=163.81 Aligned_cols=273 Identities=12% Similarity=0.043 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
..++++++ ++.++++++ ++++|+|+++++..++.+..+ ||+.|++++++|..+...++..|++++.++++.
T Consensus 67 ~~~lr~~i----a~~~~~~~~--~I~it~G~~~al~~~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~ 138 (357)
T PRK14809 67 HADLTAAL----ADRWDVSPE--QVWLANGGDGALDYLARAMLD--PGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKA 138 (357)
T ss_pred HHHHHHHH----HHHhCCCcc--eEEECCCHHHHHHHHHHHhcC--CCCEEEEeCCChHHHHHHHHHcCCeEEEEecccC
Confidence 34555555 445577654 599999999999888877765 999999999999888888889999999998853
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+..+|.+++++.+. +++ +|++++++|+||.+-+.+++.++++.+ +. +|++|++|+.+.... .....+
T Consensus 139 ~~~~~~~~~~~~~~~-~~k---~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~-----~iI~De~y~~~~~~~-~~~~~~ 208 (357)
T PRK14809 139 DDFEQTADTVLDAYD-GER---IVYLTSPHNPTGSEIPLDEVEALAERTDEET-----LVVVDEAYGEFAERP-SAVALV 208 (357)
T ss_pred cCCCcCHHHHHHhhc-CCc---EEEEeCCCCCCCcCCCHHHHHHHHHhCccCc-----EEEEechhhhccCCc-hhHHHH
Confidence 35678888777652 333 777889999999999988888887764 67 999999998654321 111111
Q ss_pred CCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChh-cHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYK-GFQKEV 370 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~-g~~~~~ 370 (476)
+..++ -++..|+.|.++ +++++|++++++++++.+...... .. ...+.+++++..+... -+++..
T Consensus 209 ~~~~~-vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~a~~~l~~~~~~~~~~ 275 (357)
T PRK14809 209 EERDD-VAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTP-------FA-----ASELACRAGLAALDDDEHVERTV 275 (357)
T ss_pred hhCCC-EEEEecchhHhcCcchhheeeecCHHHHHHHHHhCCC-------CC-----CCHHHHHHHHHHhCCHHHHHHHH
Confidence 11111 245568889885 789999999998877665332111 11 1234555555555332 245556
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeec-c----cCCEEEEEEcCCCCHHHHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLA-C----QGNIAHVVVMPNVTIDKLDDFL 440 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~-~----~~~~lRv~~~~~~T~edid~~~ 440 (476)
+...++++++.+.|.... .++.++.+.+..++..++.+ +..+. . ..+++|+++. +.++++.++
T Consensus 276 ~~~~~~r~~l~~~L~~~~----~~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l 348 (357)
T PRK14809 276 ETARWAREYIREELDAPT----WESAGNFVLAEVGDASAVAEAAQERGVIVRDCTSFGLPECIRITCG---TREETERAV 348 (357)
T ss_pred HHHHHHHHHHHHHhcCcc----CCCCCCEEEEECCCHHHHHHHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHH
Confidence 666677777877776532 24556666666654443332 22222 1 1368999864 578999999
Q ss_pred HHHHHHH
Q 011842 441 NELIENR 447 (476)
Q Consensus 441 ~~l~~~~ 447 (476)
++|+++.
T Consensus 349 ~~L~~~l 355 (357)
T PRK14809 349 EVLNEVL 355 (357)
T ss_pred HHHHHHh
Confidence 9997754
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-17 Score=167.12 Aligned_cols=283 Identities=13% Similarity=0.074 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
..++|++ +++++|.+. .++|+|||+|+.+++.+. .. ||++|+++.++|.+...++...|++++.++++.
T Consensus 35 ~~~le~~----la~~~g~~~----~v~~~sgt~al~lal~al~~~--~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~ 104 (379)
T PRK11658 35 NQALEQA----FCQLTGNQH----AIAVSSATAGMHITLMALGIG--PGDEVITPSLTWVSTLNMIVLLGATPVMVDVDR 104 (379)
T ss_pred HHHHHHH----HHHHhCCCe----EEEECCHHHHHHHHHHHcCCC--CCCEEEECCCcHHHHHHHHHHcCCEEEEEecCC
Confidence 4455555 667778753 788999999999988876 34 899999999999999999999999999999975
Q ss_pred C-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 216 S-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 216 ~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+ +.+|+++|++++.++++ +|++++ ++|...|+++|.++|++||+ ++++|++|+.+.....+.. +
T Consensus 105 ~~~~~d~~~l~~~i~~~tk---av~~~~---~~G~~~d~~~i~~~a~~~gi-----~vi~D~a~a~g~~~~~~~~----g 169 (379)
T PRK11658 105 DTLMVTPEAIEAAITPRTK---AIIPVH---YAGAPADLDAIRAIGERYGI-----PVIEDAAHAVGTYYKGRHI----G 169 (379)
T ss_pred CcCCcCHHHHHHhcccCCe---EEEEeC---CCCCcCCHHHHHHHHHHcCC-----eEEEECCCccCCeECCeec----C
Confidence 4 56999999999977664 565544 47999999999999999999 9999999985433222111 1
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcC---CccccC-------CCCCc----ccCCCCChhHHHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSS---NVEYLA-------SRDAT----IMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~---~~~yl~-------~~~~~----~~~sr~~~~~l~~~~~l~ 359 (476)
...+++++++.+|.+.+ +..|+++++++ +.+.+.. .-.+.. ..... ..|... ....+-+++.
T Consensus 170 ~~g~~~~Sf~~~K~l~~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~--~~~~l~AAl~ 246 (379)
T PRK11658 170 ARGTAIFSFHAIKNITC-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKY--NLADINAAIA 246 (379)
T ss_pred CCCCEEEeCCCCCcCcc-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccccc--CcCHHHHHHH
Confidence 12357888889999876 45666776543 4332211 000100 00000 011111 1123344555
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-----e-eEEEEecCC------cHHHhhce---eecc------
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-----S-STVVFERPQ------DEEFVRRW---QLAC------ 418 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~-~iv~f~~~~------~~~~~~~~---~l~~------ 418 (476)
....+++++..++.+++++++.+.|++.++..+..+. + .++++..+. .+++.+.+ .+.+
T Consensus 247 ~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~~ 326 (379)
T PRK11658 247 LVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFRA 326 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCcC
Confidence 5556788999999999999999999887654332211 1 233444321 12222111 1100
Q ss_pred ------------c----------CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 ------------Q----------GNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 ------------~----------~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
. ...+.+-++++.|.+|++++++.|+++.
T Consensus 327 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 327 AHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 0 1233444588889999999999998864
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-17 Score=166.42 Aligned_cols=330 Identities=10% Similarity=-0.071 Sum_probs=200.3
Q ss_pred cCCCCcCCcchHHHHHHHHHhhCCCC--CCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHH
Q 011842 100 LGYPYNLDFDYGALAQLQHFSINNLG--DPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILV 177 (476)
Q Consensus 100 ~g~p~~~~~~~~~l~~~l~~~~n~~g--~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~a 177 (476)
.|.|....++...+.+++...++... .....++...+..++++++.+|+.+..|.+.++.++++|+|+++++..++.+
T Consensus 37 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~ 116 (416)
T PRK09440 37 GGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNL 116 (416)
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHH
Confidence 45666433333455555554443211 1111222233567999999999998888765556799999999999888877
Q ss_pred HHhh---CCCcEEEe-cCCCchHHHHHHHHcCC----eEEEEeCCCC---CccCHHHHHHHHHcCCCCcEEEEEeeCCCc
Q 011842 178 GREV---FPDGILYA-SRESHYSVFKAARMYRM----ECVKVDCLIS---GEIDCADFKAKLLQNKDKPAIINVNIGTTV 246 (476)
Q Consensus 178 a~~~---~p~~~Vl~-s~~~H~S~~~~~~~~G~----~v~~v~~~~~---g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~ 246 (476)
.... .+++.|++ ..++|..+...+...+. ....++++.+ ..+|++.|+ +.+ .+.++++++++|+
T Consensus 117 l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~---~~~~i~l~~P~NP 191 (416)
T PRK09440 117 FAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDE---DTGAICVSRPTNP 191 (416)
T ss_pred HhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCC---CceEEEEecCCCC
Confidence 6541 25788998 69999888776654442 2333444332 478999987 322 2347888899999
Q ss_pred cccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh
Q 011842 247 KGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME 323 (476)
Q Consensus 247 tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~ 323 (476)
||.+-+ +++|+++|++|++ ||++|++|+-.. +.............--++..|+.|+++.++++|+++.+++
T Consensus 192 TG~~~s~~~~~~l~~~a~~~~~-----~iI~De~Y~~~~-~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRiG~~i~~~~ 265 (416)
T PRK09440 192 TGNVLTDEELEKLDALARQHNI-----PLLIDNAYGPPF-PGIIFSEATPLWNPNIILCMSLSKLGLPGVRCGIVIADEE 265 (416)
T ss_pred CCccCCHHHHHHHHHHHHHcCC-----cEEEeCCccccC-CCcchhhcCccccCCeEEEecccccCCCcceEEEEeCCHH
Confidence 999966 7888999999999 999999996322 1110000000001112455788999899999999999888
Q ss_pred hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH-----HHHHHHHHHHHHHHHHHhc----CCeEeec
Q 011842 324 HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK-----EVQKCLRNAHYLKDRLLDA----GISAMLN 394 (476)
Q Consensus 324 ~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~-----~~~~~~~~a~~l~~~L~~~----g~~~~~~ 394 (476)
+++.+.....+. ..+. ..+.+.++...+....+.+ ..+...++.+.+.+.|++. ++....+
T Consensus 266 l~~~~~~~~~~~-------~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p 335 (416)
T PRK09440 266 IIEALSNMNGII-------SLAP---GRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKP 335 (416)
T ss_pred HHHHHHHHHHHh-------ccCC---CcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecC
Confidence 776653322211 1111 2345555555553222322 2333445556666666653 2222233
Q ss_pred CCeeEEEEecCC----cHHHhh-----ceee-cc-----c--------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 395 ELSSTVVFERPQ----DEEFVR-----RWQL-AC-----Q--------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 395 ~~~~iv~f~~~~----~~~~~~-----~~~l-~~-----~--------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..++.+.+..+. +.++.+ +..+ +. . .+.+|+++.. +.++++.+++.|.++.++..
T Consensus 336 ~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 336 EGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 445666555542 233322 2222 11 1 1479999873 68999999999999887654
Q ss_pred h
Q 011842 452 E 452 (476)
Q Consensus 452 ~ 452 (476)
+
T Consensus 414 ~ 414 (416)
T PRK09440 414 A 414 (416)
T ss_pred h
Confidence 3
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-17 Score=166.95 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=152.2
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~ 218 (476)
++++.++++.|.+. .+++++|+.|+..++.+... +|+.|+++.+.|.+..... +..|++++.++..
T Consensus 65 ~Le~~lA~~~g~~~----~i~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~---- 134 (388)
T PRK07811 65 ALEEQLAALEGGAY----GRAFSSGMAATDCLLRAVLR--PGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLS---- 134 (388)
T ss_pred HHHHHHHHHhCCCc----eEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCC----
Confidence 44555777788764 56777889999999888765 9999999999998644332 2247777777653
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
|+++|++++.++++ +|+++++++++|.+.|+++|+++|++||+ ++++|++|+.+... . .....+
T Consensus 135 -d~e~l~~~i~~~tk---lV~ie~p~NPtg~~~dl~~I~~la~~~gi-----~lIvD~a~a~~~~~----~---p~~~ga 198 (388)
T PRK07811 135 -DLDAVRAAITPRTK---LIWVETPTNPLLSITDIAALAELAHDAGA-----KVVVDNTFASPYLQ----Q---PLALGA 198 (388)
T ss_pred -CHHHHHHhcCcCCe---EEEEECCCCCcceecCHHHHHHHHHHcCC-----EEEEECCCCccccC----C---chhhCC
Confidence 89999999977665 88888999999999999999999999999 99999999765432 1 111248
Q ss_pred cEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 299 GSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 299 Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
|+++.|++||+++|.. .|+++++++ +.+.+.....+. +.. ..++..|..+.. .+.+..++++..+
T Consensus 199 Divv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~--------g~~--~s~~~a~l~~~~--L~tl~~R~~~~~~ 266 (388)
T PRK07811 199 DVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGA--------GAV--PGPFDAYLTLRG--LKTLAVRMDRHSE 266 (388)
T ss_pred cEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHhc--cCcHHHHHHHHHH
Confidence 9999999999997643 688888755 333332111111 111 123444544443 4567888999999
Q ss_pred HHHHHHHHHHhcCC
Q 011842 376 NAHYLKDRLLDAGI 389 (476)
Q Consensus 376 ~a~~l~~~L~~~g~ 389 (476)
++..+.+.|++.+.
T Consensus 267 na~~la~~L~~~p~ 280 (388)
T PRK07811 267 NAEAVAEFLAGHPE 280 (388)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998764
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=167.41 Aligned_cols=211 Identities=18% Similarity=0.178 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++.+.+++++|.+. .+++++|+.|+..++.+... +++.|+++...|.+ +...+..+|++++.++.+
T Consensus 56 ~~~le~~la~l~g~~~----~~~~~sG~~Ai~~al~al~~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-- 127 (380)
T TIGR01325 56 VAAFEERIAALEGAER----AVATATGMSAIQAALMTLLQ--AGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT-- 127 (380)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC--
Confidence 3445566788888853 78899999999999877755 88999998887754 334567789999999875
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|++++++++.++++ +|++.++++++|.+.|+++|.++|+++|+ ++++|++|+.+... . + + ..
T Consensus 128 ---d~~~l~~~i~~~tk---lV~le~p~np~g~~~dl~~I~~la~~~gi-----~livD~a~~~~~~~--~--p-l--~~ 189 (380)
T TIGR01325 128 ---DLNAWEAAVKPNTK---LVFVETPSNPLGELVDIAALAELAHAIGA-----LLVVDNVFATPVLQ--Q--P-L--KL 189 (380)
T ss_pred ---CHHHHHHhcCCCce---EEEEECCCCCCCeeeCHHHHHHHHHHcCC-----EEEEECCCcccccC--C--c-h--hh
Confidence 78999998876554 88888999999999999999999999999 99999999754321 1 0 1 12
Q ss_pred cccEEEEcCCCCCCCCC-Cc-eeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPM-PC-GVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~-~~-G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
++|+++.|++|+++++. .. |+++.+++.++.+...... .+.. ..+...|.+++ +.+.+..++++..
T Consensus 190 g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~--------~g~~--~~p~~a~~~l~--~l~tl~~r~~~~~ 257 (380)
T TIGR01325 190 GADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH--------TGPA--MSPFNAWVLLK--GLETLSLRMQKQF 257 (380)
T ss_pred CCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh--------hCCC--CCHHHHHHHHh--ccCcHHHHHHHHH
Confidence 48999999999998653 33 6777777665544211111 1111 12344555544 4567788899999
Q ss_pred HHHHHHHHHHHhcCC
Q 011842 375 RNAHYLKDRLLDAGI 389 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~ 389 (476)
+++.++.+.|++.+.
T Consensus 258 ~~a~~la~~L~~~p~ 272 (380)
T TIGR01325 258 DSALAIAEWLQAQPQ 272 (380)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999863
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=166.85 Aligned_cols=212 Identities=16% Similarity=0.113 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~ 216 (476)
..++.+.++++.|.+ .+++|+||++|+..++.+... ||+.|+++.+.|.+..... ...|+++..++.
T Consensus 53 ~~~le~~lA~l~g~~----~v~~~~gg~~Ai~~~l~all~--~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~--- 123 (382)
T TIGR02080 53 RDLLQQALAELEGGA----GAVVTNTGMSAIHLVTTALLG--PDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ--- 123 (382)
T ss_pred HHHHHHHHHHHhCCC----cEEEEcCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC---
Confidence 345556678888743 289999999999988888765 8999999999997644332 223456665542
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
.|++.+++++.++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++|..+.... + + ..
T Consensus 124 --~d~~~l~~ai~~~tk---lV~l~~p~NPtG~~~dl~~I~~la~~~g~-----~vvvD~a~~~~~~~~----p-l--~~ 186 (382)
T TIGR02080 124 --GDEQALRAALAQKPK---LVLIETPSNPLLRVVDIAKICHLAKAVGA-----VVVVDNTFLSPALQN----P-L--AL 186 (382)
T ss_pred --CCHHHHHHhcCcCce---EEEEECCCCCCCEecCHHHHHHHHHHcCC-----EEEEECCCcccccCC----c-h--hh
Confidence 389999999977654 88888999999999999999999999999 999999997543321 1 1 12
Q ss_pred cccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|+++.|++||++++.+ .|+++++++ +.+.+.....++... ..++..|..++ |.+.+..++++.
T Consensus 187 gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~----------~sp~~a~l~lr--~l~tl~~R~~~~ 254 (382)
T TIGR02080 187 GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVT----------GGAFDSYLTLR--GLRTLVARMRLQ 254 (382)
T ss_pred CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCC----------CCHHHHHHHHc--ccchHHHHHHHH
Confidence 379999999999987654 788777654 444443222232111 23466666654 456778889999
Q ss_pred HHHHHHHHHHHHhcCCe
Q 011842 374 LRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~ 390 (476)
.+++..+.+.|++.+..
T Consensus 255 ~~na~~~a~~L~~~p~v 271 (382)
T TIGR02080 255 QRNAQAIVEYLQTQPLV 271 (382)
T ss_pred HHHHHHHHHHHHhCCCe
Confidence 99999999999988753
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-17 Score=165.83 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~ 216 (476)
...+.++++++.|.+ .+++|+||++|+..++.+... ||+.|+++.+.|.+.... ....|+++..++
T Consensus 54 ~~~L~~~lA~l~g~~----~~i~~~sg~~Ai~~~l~~l~~--~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd---- 123 (386)
T PRK08045 54 RDVVQRALAELEGGA----GAVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD---- 123 (386)
T ss_pred HHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHHHcC--CCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC----
Confidence 345566678888853 289999999999988877665 999999999999754332 222344666654
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
..|++++++++.++++ +|.+++++|++|.+.|+++|.++|+++|+ ++++|++|..+... . ....
T Consensus 124 -~~d~e~l~~~l~~~tk---lV~l~sP~NPtG~v~di~~I~~ia~~~g~-----~vivDeay~~~~~~----~---pl~~ 187 (386)
T PRK08045 124 -QGDEQALRAALAEKPK---LVLVESPSNPLLRVVDIAKICHLAREAGA-----VSVVDNTFLSPALQ----N---PLAL 187 (386)
T ss_pred -CCCHHHHHHhcccCCe---EEEEECCCCCCCEecCHHHHHHHHHHcCC-----EEEEECCCCccccC----C---chhh
Confidence 2589999999876654 88889999999999999999999999999 99999999765432 1 1122
Q ss_pred cccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|+++.|++||++++.+ .|+++++++ +.+.+.....++.. + ..++..|..++.+ +.+..++++.
T Consensus 188 gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~-------~---~~p~~~~l~~rgl--~tl~~R~~~~ 255 (386)
T PRK08045 188 GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV-------T---GGAFDSYLLLRGL--RTLVPRMELA 255 (386)
T ss_pred CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC-------C---CCHHHHHHHHhhh--ccHHHHHHHH
Confidence 489999999999986654 687777544 44444222223211 1 2356777666654 5688999999
Q ss_pred HHHHHHHHHHHHhcCCe
Q 011842 374 LRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~ 390 (476)
.+++..+.+.|++.+..
T Consensus 256 ~~na~~la~~L~~~p~v 272 (386)
T PRK08045 256 QRNAQAIVKYLQTQPLV 272 (386)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 99999999999998753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-17 Score=168.07 Aligned_cols=210 Identities=19% Similarity=0.184 Sum_probs=153.8
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~g 217 (476)
.++.+.+++++|.+. ..++++|+.|+..++.+... ||+.|+++.+.|.+.. ..+...|++++.++.
T Consensus 68 ~~Le~~lA~l~G~~~----~~~~~sG~~Ai~~~l~~~l~--~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~---- 137 (398)
T PRK07504 68 DMFEKRMCALEGAED----ARATASGMAAVTAAILCQVK--AGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG---- 137 (398)
T ss_pred HHHHHHHHHHhCCCe----eeEecCHHHHHHHHHHHHhC--CCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC----
Confidence 345556788889875 45788999999877776554 8999999999887643 334556888888862
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
+|++++++++.++++ +|+++++++++|.+.|+++|.++|+++|+ ++++|++|+.+.... + . ..+
T Consensus 138 -~d~e~l~~ai~~~tk---lV~lesp~NptG~v~dl~~I~~la~~~gi-----~lvvD~a~a~~~~~~----~-~--~~g 201 (398)
T PRK07504 138 -LDLDNWEKAVRPNTK---VFFLESPTNPTLEVIDIAAVAKIANQAGA-----KLVVDNVFATPLFQK----P-L--ELG 201 (398)
T ss_pred -CCHHHHHHhcCcCce---EEEEECCCCCCcEecCHHHHHHHHHHcCC-----EEEEECCccccccCC----c-h--hhC
Confidence 689999999977665 89899999999999999999999999999 999999997544321 0 1 124
Q ss_pred ccEEEEcCCCCCCC-CCCce-eEEeehhhhhh-hcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGC-PMPCG-VQITRMEHINV-LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~-p~~~G-~l~~~~~~~~~-l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+++.|+|||+++ +++.| +++.+++.+.. +. .++. ..+.. ..++.+|..++ +.+.+..++++..
T Consensus 202 aDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~-----~~g~~--~s~~~A~~~l~--~L~tl~~R~~~~~ 269 (398)
T PRK07504 202 AHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFR-----HTGPS--LSPFNAWTLLK--GLETLPVRVRQQT 269 (398)
T ss_pred CCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHH-----HhCCC--CCHHHHHHHHh--ccchHHHHHHHHH
Confidence 89999999999975 34565 55555554432 21 1111 11222 23455665555 4567888999999
Q ss_pred HHHHHHHHHHHhcCC
Q 011842 375 RNAHYLKDRLLDAGI 389 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~ 389 (476)
++++.+.+.|++.+.
T Consensus 270 ~na~~la~~L~~~p~ 284 (398)
T PRK07504 270 ESAAAIADFLAGHPK 284 (398)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998753
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=160.83 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++ ++++|++++ ++++|+|+++++...+.+. +++.|+++.+.|..+...++..|++++.++.+.+
T Consensus 57 ~~~lr~~i----a~~~~~~~~--~I~~t~G~~~~l~~~~~~~----~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~ 126 (337)
T PRK03967 57 SDPLREAI----AEFYGLDAE--NIAVGNGSDELISYLVKLF----EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKED 126 (337)
T ss_pred HHHHHHHH----HHHhCcCcc--eEEEcCCHHHHHHHHHHHh----CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCC
Confidence 34565554 455567653 5999999999987654432 7899999999999888888999999999999877
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+.+|++.|++.+ ++++ +++++++.|+||.+-+.++|.++++ +++ ++++|++|..+... ...+..+..+
T Consensus 127 ~~~d~~~l~~~~-~~~~---~v~~~~P~NPtG~~~~~~~l~~i~~-~~~-----~ii~De~y~~~~~~--~~~~~~~~~~ 194 (337)
T PRK03967 127 FTIDGERIAEKA-KNAS---AVFICSPNNPTGNLQPEEEILKVLE-TGK-----PVVLDEAYAEFSGK--SLIGLIDEYP 194 (337)
T ss_pred CCcCHHHHHHhc-cCCC---EEEEeCCCCCCCCCCCHHHHHHHHh-cCC-----EEEEECchhhhccc--chHHHHhhCC
Confidence 889999998865 3343 6667899999999999999999995 799 99999999754311 1110011111
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCL 374 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~ 374 (476)
. -++..|+.|.++ .++++|++++++++++.+....... + ...+.+.++...+. .+-+.+.+++..
T Consensus 195 ~-vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~~---------~---~~~~~q~~~~~~l~~~~~~~~~~~~~~ 261 (337)
T PRK03967 195 N-LILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPF---------S---LNILTMKIVRLALDHYDLIEERIDYII 261 (337)
T ss_pred C-EEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCCC---------C---CCHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2 245678999887 8899999999888776654322110 1 11344444443332 223444555666
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHH-hhceeec----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEF-VRRWQLA----CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~-~~~~~l~----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+.++.+.+.|.+.. .++.++.+.+..+-...+ .++..+. ...+.+|+++. +.++.++|+++|+++.+.
T Consensus 262 ~~r~~l~~~L~~~~----~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~ 334 (337)
T PRK03967 262 KERERVRRELGEYA----YPSDANFLLLKLDAYDYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALKEIKEG 334 (337)
T ss_pred HHHHHHHHHhccCc----CCCCCcEEEEhHHHHHHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 67777888887542 244555555544321222 2333331 12357898874 688999999999877543
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=163.96 Aligned_cols=282 Identities=16% Similarity=0.044 Sum_probs=178.1
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCccCH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEIDC 221 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~D~ 221 (476)
++++.+++++|.+. .++++|||+|+..++.+.. ..||+.|+++.++|.++..++...|++++.+++++ ++.+|+
T Consensus 33 ~le~~la~~~g~~~----~v~~~sgt~al~~~l~al~-~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~ 107 (380)
T TIGR03588 33 AFEEALAEYVGAKY----AVAFNSATSALHIACLALG-VGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDE 107 (380)
T ss_pred HHHHHHHHHHCCCe----EEEEcCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCH
Confidence 34444667777753 6777889999998887762 23899999999999999999999999999999964 678999
Q ss_pred HHHHHHHH----cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 222 ADFKAKLL----QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 222 ~~Le~~l~----~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
++|++.++ ++++ +|++++ ++|...|+++|.++|++||+ ++++|++|+.+..-.... +.....
T Consensus 108 ~~l~~~i~~~~~~~t~---~v~~~~---~~G~~~~~~~i~~l~~~~~~-----~lI~D~a~a~g~~~~~~~---~g~~~~ 173 (380)
T TIGR03588 108 DALEKKLAAAKGKLPK---AIVPVD---FAGKSVDMQAIAALAKKHGL-----KIIEDASHALGAEYGGKP---VGNCRY 173 (380)
T ss_pred HHHHHHhhcccCCCce---EEEEeC---CCCccCCHHHHHHHHHHcCC-----EEEEECCCcccCccCCEe---CCCccc
Confidence 99999998 3443 665554 46999999999999999999 999999998553211111 111113
Q ss_pred ccEEEEcCC--CCCCCCCCceeEEeehh-hhhhhc---CC-----cc-ccCC--CCCcc----cCCCCChhHHHHHHHHH
Q 011842 298 IGSVSVSGH--KFVGCPMPCGVQITRME-HINVLS---SN-----VE-YLAS--RDATI----MGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 298 ~Dsi~~s~h--K~l~~p~~~G~l~~~~~-~~~~l~---~~-----~~-yl~~--~~~~~----~~sr~~~~~l~~~~~l~ 359 (476)
.|+.++|+| |++.+| ..|+++++++ +.+.+. .. .. +... ....+ .|.......+.....+.
T Consensus 174 ~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~ 252 (380)
T TIGR03588 174 ADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLS 252 (380)
T ss_pred cceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHH
Confidence 599999988 899876 4555666544 333221 00 00 0000 00000 01110111122111222
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--C--e----eEEEEecC---CcHHHhh-----ceee-----cc
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--L--S----STVVFERP---QDEEFVR-----RWQL-----AC 418 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~--~----~iv~f~~~---~~~~~~~-----~~~l-----~~ 418 (476)
..+.+.++.++.+++++++.+.|+..+......+ . + .++.+... ..+.+.+ +..+ +.
T Consensus 253 --qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~ 330 (380)
T TIGR03588 253 --QLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPV 330 (380)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCccc
Confidence 2355788889999999999999998764332221 1 1 12222211 1122211 1100 10
Q ss_pred ----------c-----------CCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 ----------Q-----------GNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 ----------~-----------~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
. ...+++-+++..|++||++++++|+++
T Consensus 331 ~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 331 HLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred ccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 0 145777789999999999999999875
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-16 Score=159.53 Aligned_cols=274 Identities=13% Similarity=0.018 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELE-NNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~-~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+..|.+ .+..++++|+|+++++..++.+. .. +|+.|++++++|.++...++.+|++++.++
T Consensus 57 G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~- 133 (357)
T TIGR03539 57 GTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLG--PGDTVVIPELAYPTYEVGALLAGATPVAAD- 133 (357)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCC--CCCEEEECCCCcHHHHHHHHhcCCEEeccC-
Confidence 56799999999999987765 44456999999999988766654 34 899999999999999999999999887774
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
|++.++. + ++.+|++++++|+||.+-+ +++|+++|++||+ ++++|++|+.+.+.. ....
T Consensus 134 ------~~~~l~~---~---~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~-~~~~ 195 (357)
T TIGR03539 134 ------DPTELDP---V---GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGA-----VVASDECYLELGWEG-RPVS 195 (357)
T ss_pred ------ChhhcCc---c---CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCe-----EEEEecchhhhccCC-CCcc
Confidence 3333321 2 2347778889999999865 7789999999999 999999997543321 1111
Q ss_pred CCCC-----cccccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-
Q 011842 291 KVSF-----KKPIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY- 363 (476)
Q Consensus 291 ~~~~-----~~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~- 363 (476)
.++. ...-.++..|+.|.+ ++++++|+++.++++++.+.....+. ..+. ..+.+.++...+..
T Consensus 196 ~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~~~-------~~~~---~~~~q~~~~~~l~~~ 265 (357)
T TIGR03539 196 ILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRKHA-------GLMV---PAPVQAAMVAALGDD 265 (357)
T ss_pred ceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHhhc-------ccCC---CHHHHHHHHHHcCCH
Confidence 1110 011136667889976 67899999998877665543211111 0111 13344444444432
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-cCCc-HHHh-----hceeecc-------cCCEEEEEEcC
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-RPQD-EEFV-----RRWQLAC-------QGNIAHVVVMP 429 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-~~~~-~~~~-----~~~~l~~-------~~~~lRv~~~~ 429 (476)
..+++..++..++++++.+.|++.|+. +.++.+++++|. .+.+ .++. +++.+.. ..+++|+++..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~L~~~g~~-~~~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~ 344 (357)
T TIGR03539 266 GHVAEQKARYAARRAQLKPALEKAGFR-IDHSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA 344 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC-CcCCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC
Confidence 335556677778888999999888754 344545554443 3322 2222 2333321 23689999864
Q ss_pred CCCHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNEL 443 (476)
Q Consensus 430 ~~T~edid~~~~~l 443 (476)
+.++|+..++.|
T Consensus 345 --~~~~i~~~~~~l 356 (357)
T TIGR03539 345 --TDERIAAAVARL 356 (357)
T ss_pred --CHHHHHHHHHhh
Confidence 688988888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=166.64 Aligned_cols=293 Identities=10% Similarity=0.062 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHHHHcCC--CCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH-HcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWEL--ENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~--~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~-~~G~~v~~v~ 212 (476)
|...+++++++++.+.+|. +.++..+++|+|+++|+.+.+.+..+ ||+.|+++.+.|..+...++ ..|++++.|+
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~--pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~ 173 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILAD--PGDALLVPTPYYPGFDRDLRWRTGVKIVPIH 173 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCCcchHHHHHhcCCcEEEEEe
Confidence 5679999999999988773 23334699999999999887777666 99999999999998887776 4799999999
Q ss_pred CCC--CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CLI--SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~~--~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
+++ ++.+|++.|++++.+. +.++.++++++|+|++|.+-+ +++|.++|++|++ ++++|++|+..++.
T Consensus 174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i-----~lI~DEiYa~~~f~ 248 (447)
T PLN02607 174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNI-----HLVSDEIYSGSVFS 248 (447)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCC-----EEEEeccccccccC
Confidence 874 3468999999998751 233457778899999999866 7899999999999 99999999876543
Q ss_pred ccccCCCCC---------CcccccEEEEcCCCCCC-CCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 285 FVKKAPKVS---------FKKPIGSVSVSGHKFVG-CPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 285 ~~~~~~~~~---------~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
.....+... ..+++ .+..++.|-++ .++++|+++..++ +...+.....|. .. ..+.
T Consensus 249 ~~~f~S~~s~~~~~~~~~~~~~v-~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~---------~~---s~~~ 315 (447)
T PLN02607 249 ASEFVSVAEIVEARGYKGVAERV-HIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFT---------LV---SSQT 315 (447)
T ss_pred CCCcccHHHHHhhcCCCCCcCcE-EEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcC---------CC---CHHH
Confidence 211111111 01223 34567788665 8999999998543 444432222221 00 1233
Q ss_pred HHHHHHHhChhc-----HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCC-------cH--HH----hh--
Q 011842 354 LWYTLNRKGYKG-----FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQ-------DE--EF----VR-- 412 (476)
Q Consensus 354 ~~~~l~~~g~~g-----~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~-------~~--~~----~~-- 412 (476)
+.++...+.... ++...+++.+..+.+.+.|++.|+.. .++. ...+.++.+. .. ++ .+
T Consensus 316 q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~-~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~ 394 (447)
T PLN02607 316 QHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIEC-LKGNAGLFCWMNLSPLLETPTREGELALWDSILREV 394 (447)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhC
Confidence 333333333222 34455666778888999999888643 3444 4444444431 11 11 21
Q ss_pred ceeecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 413 RWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 413 ~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+..+.. ..+++|+++.. .++++++..++.|.+..++.
T Consensus 395 gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~ 438 (447)
T PLN02607 395 KLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDRR 438 (447)
T ss_pred CEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 333321 24799998874 45888998888888877543
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-16 Score=170.61 Aligned_cols=228 Identities=13% Similarity=0.039 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI--S 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~ 216 (476)
..-.++.+..|+++|.+.. -++|+|+|.+|..+++++.. +|+.|++++..|-|+..++.+.|+.+++++... .
T Consensus 205 G~I~eAq~~aA~~fgA~~t---~FlvNGST~gn~a~i~a~~~--~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~ 279 (755)
T PRK15029 205 GAFGESEKYAARVFGADRS---WSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRY 279 (755)
T ss_pred cHHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeEEEeccccccc
Confidence 4566778889999999853 67889999999988888876 999999999999999999999999999986542 1
Q ss_pred ---CccC-----HHHHHHHHHcCC-------CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 217 ---GEID-----CADFKAKLLQNK-------DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 217 ---g~~D-----~~~Le~~l~~~~-------~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
+.++ ++.++++|.+++ .+|..+++|++ |+.|.+.++++|+++|+++++ .|+||+|||+.
T Consensus 280 Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~-----~llvDEAhGah 353 (755)
T PRK15029 280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSD-----RLHFDEAWYGY 353 (755)
T ss_pred CCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCC-----eEEEECccccc
Confidence 3455 999999997653 35667888765 578999999999999999999 99999999875
Q ss_pred cccccccCCC-CCC-----c-cccc-EEEEcCCCCCCCCCCceeEEeehh--hhh--hhcCCccccCCCCCcccCCCCCh
Q 011842 282 MMPFVKKAPK-VSF-----K-KPIG-SVSVSGHKFVGCPMPCGVQITRME--HIN--VLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 282 ~~~~~~~~~~-~~~-----~-~~~D-si~~s~hK~l~~p~~~G~l~~~~~--~~~--~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
... ....+. ... . .++| .++-|.||.|.+-...+++.+++. .++ .+......+.++ -+
T Consensus 354 ~~F-~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~qST-------SP-- 423 (755)
T PRK15029 354 ARF-NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATT-------SP-- 423 (755)
T ss_pred ccc-CccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHHcCC-------Cc--
Confidence 432 221111 111 2 3478 888999999999999999998654 221 221111111111 11
Q ss_pred hHHHHHHHH----HHhChhcHHHHHHHHHHHHHHHHHHHHhcC
Q 011842 350 APIFLWYTL----NRKGYKGFQKEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 350 ~~l~~~~~l----~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g 388 (476)
+..+.+++ +.+....-++.+++..+.+..|++.|++.+
T Consensus 424 -SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~ 465 (755)
T PRK15029 424 -LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 12222222 222111235567777888888888887653
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=162.36 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----CCcEEEecCCCchHHHHHHHHcCCeEE----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----PDGILYASRESHYSVFKAARMYRMECV---- 209 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p~~~Vl~s~~~H~S~~~~~~~~G~~v~---- 209 (476)
+...++.+++++++|.+ ..++++||++|+..++.+++... +++.|++.++++..+...+...+....
T Consensus 69 ~~~~~l~~~la~~~g~~----~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 144 (379)
T TIGR00707 69 EPQEELAEKLVEHSGAD----RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKG 144 (379)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhcc
Confidence 56777888899999875 38999999999999998775321 257888877766444433433333221
Q ss_pred EEeCCCCCcc----CHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 210 KVDCLISGEI----DCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 210 ~v~~~~~g~~----D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
..+...+... |+++|++.+.++++ +|+++...+++|.. +++++|.++|++||+ ++++|++|.++
T Consensus 145 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~---~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~-----~~i~De~~~~~ 216 (379)
T TIGR00707 145 FEPLVPGFSYAPYNDIESLKKAIDDETA---AVIVEPIQGEGGVNPASAEFLKALREICKDKDA-----LLIFDEVQTGI 216 (379)
T ss_pred CCCCCCCceeeCCCCHHHHHHHhhhCee---EEEEEccccCCCCccCCHHHHHHHHHHHHHcCC-----EEEEeccccCC
Confidence 1222222221 89999999876543 67776666666654 348999999999999 99999999764
Q ss_pred cccccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 282 MMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 282 ~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
.... ...+ +... ...|.++ ++|.+++++++|+++.++++++.+...... .++. .+.......+++++.
T Consensus 217 ~~~g-~~~~-~~~~~~~~d~~t--~sK~~~~G~riG~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~aa~aaL~~ 285 (379)
T TIGR00707 217 GRTG-KFFA-YEHYGIEPDIIT--LAKGLGGGVPIGATLAKEEVAEAFTPGDHG-----STFG--GNPLACAAALAVLEV 285 (379)
T ss_pred Cccc-hhhh-HHhcCCCCCEEE--EcccccCCcccEEEEEcHHHHhhhcCCCCC-----CCCC--CCHHHHHHHHHHHHH
Confidence 3211 1110 1111 1246554 579999889999999988876665321111 1111 111222333344444
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe---ecCCeeEEEEecCCc-HHHh-----hceeecc-cCCEEEEEEcCC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM---LNELSSTVVFERPQD-EEFV-----RRWQLAC-QGNIAHVVVMPN 430 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~---~~~~~~iv~f~~~~~-~~~~-----~~~~l~~-~~~~lRv~~~~~ 430 (476)
+.. .+..++..+++++++++|++.+.... .++..+++.+..+++ .++. +++.+.. ..+.+|++++..
T Consensus 286 ~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~ 362 (379)
T TIGR00707 286 IEK---ERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLI 362 (379)
T ss_pred HHh---hhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecCcHHHHHHHHHHCCcEEeeCCCCEEEEECCCc
Confidence 322 34567777888888888877533211 122345555655432 3332 2333433 347899999888
Q ss_pred CCHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIEN 446 (476)
Q Consensus 431 ~T~edid~~~~~l~~~ 446 (476)
+|.++|+++++.|+++
T Consensus 363 ~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 363 ITKEEIDEAVSALEEA 378 (379)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999865
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=163.66 Aligned_cols=278 Identities=13% Similarity=0.058 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-------C--CcEEEecCCCchHHHHHHHHc-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-------P--DGILYASRESHYSVFKAARMY----- 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-------p--~~~Vl~s~~~H~S~~~~~~~~----- 204 (476)
+...++.+.++++.|.+ ..+++++||+||..|+.+++... + +.+|.++..-|.+...+....
T Consensus 83 ~~~~~l~~~l~~~~~~~----~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~ 158 (401)
T PRK00854 83 DQLAPLYEELAALTGSH----KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDA 158 (401)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccc
Confidence 34455666677777764 28999999999999999997531 1 234555555565543332211
Q ss_pred -------CCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 205 -------RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 205 -------G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
..++..+|.. |+++|++.+.+++ .+|+++.+.+++|.+.| +++|.++|++||+ +++
T Consensus 159 ~~~~~~~~~~~~~~~~~-----d~~~le~~i~~~~---~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi-----~lI 225 (401)
T PRK00854 159 RGGFGPFTPGFRVVPFG-----DAEALEAAITPNT---VAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNV-----TLI 225 (401)
T ss_pred cccCCCCCCCeEEeCCC-----CHHHHHHHhCCCe---EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 1133444433 8999999997654 48889899999999987 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.++... ..... .... -..|.++++ |++..+ +++|+++.+++.++.+..... ..++.+ .+
T Consensus 226 ~DEv~~g~g~~-g~~~~-~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~~-----~~t~~~-----~~ 291 (401)
T PRK00854 226 LDEIQTGLGRT-GKLLA-EEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQH-----GSTFGG-----NP 291 (401)
T ss_pred EechhhCCCCC-chHhH-HhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCCC-----CCCCCc-----CH
Confidence 99999753221 11000 0000 125776664 888777 589999999887665532110 112221 23
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEec-CC---cHHHh-----hceeec-cc
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM--LNELSSTVVFER-PQ---DEEFV-----RRWQLA-CQ 419 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~-~~---~~~~~-----~~~~l~-~~ 419 (476)
+.+++++..+..-.-....++..+++++|.+.|++.+...+ ..+...++.|.. ++ ..++. ++..+. ..
T Consensus 292 ~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~~ 371 (401)
T PRK00854 292 LACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKDTH 371 (401)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEecCC
Confidence 44444444432111123567788899999999988754322 122234444432 22 12222 223332 23
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
.+.+|++++..+|+++||++++.|+++.
T Consensus 372 ~~~lR~~p~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 372 DHTIRLAPPLVITREQVDWALEQIAKVL 399 (401)
T ss_pred CCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999998765
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=164.48 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=155.9
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~g 217 (476)
+++.+.++++.|.+. .+++++|+.|+..++.+... ||+.|+++.+.|.. +...++..|++++.++.+
T Consensus 68 ~~le~~lA~l~g~~~----~i~~~sG~~Al~~~l~~ll~--~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 138 (403)
T PRK07503 68 ALLEQRMASLEGGEA----AVALASGMGAITATLWTLLR--PGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT--- 138 (403)
T ss_pred HHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHHcC--CCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC---
Confidence 345566888888864 68888999998888876644 99999999987754 234566789999988875
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|++.|++++.++++ +|++.++++++|.+.|+++|+++|++||+ ++++|++|+.+... .+ + ...
T Consensus 139 --d~~~l~~~i~~~tk---lV~le~p~NPtG~~~di~~I~~la~~~gi-----~lIvD~a~a~~~~~----~~-l--~~g 201 (403)
T PRK07503 139 --DPAALKAAISDKTR---MVYFETPANPNMRLVDIAAVAEIAHGAGA-----KVVVDNTYCTPYLQ----RP-L--ELG 201 (403)
T ss_pred --CHHHHHHhcCccCc---EEEEeCCCCCCCeeeCHHHHHHHHHHcCC-----EEEEECCCcccccC----Cc-h--hhC
Confidence 89999999977665 78888999999999999999999999999 99999999754321 11 1 124
Q ss_pred ccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
+|+++.|++|+++++. ..|+++.++++.+.+.... + ....+.+ ...+..|..++ +.+.+..++++..+
T Consensus 202 ~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~-~-----~~~~g~~--~s~~~a~l~l~--~L~tl~~r~~~~~~ 271 (403)
T PRK07503 202 ADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEG-L-----KDMTGAV--MSPFDAFLLMR--GLKTLALRMDRHCA 271 (403)
T ss_pred CCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhh-H-----HhCcCCC--CCHHHHHHHHc--CcchHHHHHHHHHH
Confidence 7999999999999653 3788886666655443110 0 0011222 23455555554 45677888888889
Q ss_pred HHHHHHHHHHhcCC
Q 011842 376 NAHYLKDRLLDAGI 389 (476)
Q Consensus 376 ~a~~l~~~L~~~g~ 389 (476)
++..+.+.|++.+.
T Consensus 272 na~~~a~~L~~~p~ 285 (403)
T PRK07503 272 SAQAVAEWLARHPA 285 (403)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998764
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=166.59 Aligned_cols=219 Identities=16% Similarity=0.092 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~ 216 (476)
.+.+.+.++++.|.+. .++|++|+.|+..++.+... +|+.|+++...|.. +...++..|++++.++..
T Consensus 66 ~~~Le~~lA~leg~~~----al~~~sG~~Ai~~al~~ll~--~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-- 137 (431)
T PRK08248 66 TDVFEKRIAALEGGIG----ALAVSSGQAAITYSILNIAS--AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-- 137 (431)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC--
Confidence 3345556788888653 89999999999999887755 89999999988754 334567789999999874
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|+++|+++|.++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++++..... .....
T Consensus 138 ---d~e~l~~ai~~~tk---lV~l~sp~NPtG~v~di~~I~~la~~~gi-----~vIvD~t~a~~~~~-------~pl~~ 199 (431)
T PRK08248 138 ---DPENFEAAITDKTK---ALFAETIGNPKGDVLDIEAVAAIAHEHGI-----PLIVDNTFASPYLL-------RPIEH 199 (431)
T ss_pred ---CHHHHHHhcCCCCe---EEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEeCCCCccccC-------ChhHc
Confidence 89999999977654 78888999999999999999999999999 99999998743221 11223
Q ss_pred cccEEEEcCCCCCCCCC-CceeEEeehh-hh-h---h---h-cCCccc-----cC---------CC---CCcccCCCCCh
Q 011842 297 PIGSVSVSGHKFVGCPM-PCGVQITRME-HI-N---V---L-SSNVEY-----LA---------SR---DATIMGSRNGH 349 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~-~~G~l~~~~~-~~-~---~---l-~~~~~y-----l~---------~~---~~~~~~sr~~~ 349 (476)
++|+++.|+|||+++|. .+|.+++... .. . . + .....| .. .. .....|.. .
T Consensus 200 gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--l 277 (431)
T PRK08248 200 GADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAA--L 277 (431)
T ss_pred CCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCC--C
Confidence 49999999999999765 4777776432 11 0 0 0 000011 00 00 00011211 2
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
.+...|.. ..|.+.+..++++..+++..+.+.|++.+.
T Consensus 278 ~p~~a~l~--~rgl~tl~~R~~~~~~nA~~la~~L~~~p~ 315 (431)
T PRK08248 278 SPFNSFLL--LQGLETLHLRMERHSENALAVAKFLEEHEA 315 (431)
T ss_pred CHHHHHHH--hcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23444533 346677889999999999999999999864
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=162.91 Aligned_cols=299 Identities=14% Similarity=0.050 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHHHHHHcC-CCCC-cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-HHcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWE-LENN-EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-RMYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g-~~~~-~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~~~G~~v~~v~ 212 (476)
+..++++.+.+++.+..+ ..++ ...+++|+|+++++.+.+.+..+ |++.|++++++|..+...+ ...|++++.+|
T Consensus 45 G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~ 122 (388)
T PRK08637 45 GIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD--QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYP 122 (388)
T ss_pred CCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHhcCCEEEEec
Confidence 345788888877766442 2221 13478999999999988887766 9999999999999988865 46899999999
Q ss_pred CC-CCCccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC---HHHHHHHHHH-----hCCCCCceEEEEecCccccc
Q 011842 213 CL-ISGEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEE-----SGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 213 ~~-~~g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~-----~g~~~~~~~lhvD~a~~g~~ 282 (476)
+. +++.+|+++|++.++.. .+...+++++++.||||.+-+ +++|+++|++ |++ +|++|++|..+.
T Consensus 123 ~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~-----~iI~De~Y~~l~ 197 (388)
T PRK08637 123 IFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKV-----VAVVDDAYFGLF 197 (388)
T ss_pred ccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcE-----EEEecccchhcc
Confidence 84 55679999999998721 112246777789999998854 6777777765 899 999999998766
Q ss_pred ccccccCCCC----CCcccccEEE-EcCCC-CCCCCCCceeEEeeh------hhhhhhcCCc-cccCCCCCcccCCCCCh
Q 011842 283 MPFVKKAPKV----SFKKPIGSVS-VSGHK-FVGCPMPCGVQITRM------EHINVLSSNV-EYLASRDATIMGSRNGH 349 (476)
Q Consensus 283 ~~~~~~~~~~----~~~~~~Dsi~-~s~hK-~l~~p~~~G~l~~~~------~~~~~l~~~~-~yl~~~~~~~~~sr~~~ 349 (476)
+......+.+ +..+++.++. .++.| ++.+++++||+++.. ++.+.+.... .+... +.. + .
T Consensus 198 ~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~-~---~ 270 (388)
T PRK08637 198 YEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRS---NIS-N---G 270 (388)
T ss_pred cCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhc---ccC-C---C
Confidence 5332221111 1112333333 25555 788999999999753 4444442110 01100 000 1 1
Q ss_pred hHHHHHHHHHHhChhcHHHH----HHHHHHHHHHHHHHHHhcC---CeEeecCCeeEEE-EecCC--cHHHhh------c
Q 011842 350 APIFLWYTLNRKGYKGFQKE----VQKCLRNAHYLKDRLLDAG---ISAMLNELSSTVV-FERPQ--DEEFVR------R 413 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~----~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~iv~-f~~~~--~~~~~~------~ 413 (476)
..+.+.++...+....+.+. .....++.+.+.+.|++.+ ...+.++.++.++ ++.+. +.++.+ +
T Consensus 271 s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~l~~~l~~~~g 350 (388)
T PRK08637 271 PHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGVDAEELRVHLLEKYG 350 (388)
T ss_pred CcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChHHHHHHHHHHhhhcc
Confidence 13444455555433333333 3344555566677776652 2233344444444 45542 223322 2
Q ss_pred eee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 414 WQL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 414 ~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+ ....+.+|+++.. .+.++++..++.|.++.+.
T Consensus 351 v~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~ 386 (388)
T PRK08637 351 IGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIKD 386 (388)
T ss_pred eEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHHh
Confidence 222 2234679998875 6799999999999887764
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-16 Score=158.17 Aligned_cols=266 Identities=11% Similarity=0.032 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.++++++.+|+.+. ++++ .++++|+|+++++..++.+. +.|++.+++|..+..+++.+|++++.+|.++++
T Consensus 59 ~~Lr~aia~~~~~~-~~~~--~~i~it~Ga~~~i~~~~~~~------d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 129 (335)
T PRK14808 59 EELIEKILSYLDTD-FLSK--NNVSVGNGADEIIYVMMLMF------DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDL 129 (335)
T ss_pred HHHHHHHHHHhCCC-CCCc--ceEEEcCCHHHHHHHHHHHh------CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcC
Confidence 47777777776553 2544 35999999999999887654 368888999999999999999999999998777
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.++... + ..+ .+++++++.|+||.+-+.+++.+++ ++++ ||++|++|..+... ...+.+...+.
T Consensus 130 ~~~~~~----~-~~~---~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~-----~ii~DE~Y~~f~~~--~~~~~~~~~~~ 193 (335)
T PRK14808 130 RIPEVN----V-GEG---DVVFIPNPNNPTGHVFEREEIERIL-KTGA-----FVALDEAYYEFHGE--SYVDLLKKYEN 193 (335)
T ss_pred CCChhH----c-cCC---CEEEEeCCCCCCCCCcCHHHHHHHH-hcCC-----EEEEECchhhhcCC--chHHHHHhCCC
Confidence 665432 2 223 3777889999999999999999998 5788 99999999754211 11110111111
Q ss_pred ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLR 375 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~ 375 (476)
-+++.|+.|.++ +++++|++++++++++.+....... ..+ .+.++++...+. .+-+.+.++...+
T Consensus 194 -vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~~-------~~~-----~~~q~a~~~~l~~~~~~~~~~~~~~~ 260 (335)
T PRK14808 194 -LAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPF-------NVS-----YVSQMFAKVALDHREIFEERTKFIVE 260 (335)
T ss_pred -EEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCCC-------CCC-----HHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 246677889888 8999999999988776663322110 111 222333322221 2234556667777
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCC-c-HHHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQ-D-EEFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~-~~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
.++++.+.|++.|+. +.++..+.+.+..+. + ..+. +++.+..-.+.+|+++ -+.++.++|+++|++
T Consensus 261 ~r~~l~~~L~~~g~~-~~~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~~~~~~Risi---~~~~~~~~~~~~l~~ 333 (335)
T PRK14808 261 ERERMKSALREMGYR-ITDSRGNFVFIFMEKEEKERLLEHLRAKNIAVRSFREGVRITI---GKREENDMILKELEV 333 (335)
T ss_pred HHHHHHHHHHHCCCE-ECCCCCeEEEEeCCCccHHHHHHHHHHCCeEEEECCCCeEEec---CCHHHHHHHHHHHHh
Confidence 788899999988854 445566676666653 2 2222 2333322236789887 457999999999875
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-16 Score=158.56 Aligned_cols=275 Identities=12% Similarity=0.059 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.+++++++++ ++++++ ++++|+|+++++...+.+. . +++.|++.+++|..+...++.+|++++.+|.+.++
T Consensus 60 ~~Lr~aia~~----~~v~~~--~I~it~G~~~~i~~~~~~l-~--~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 130 (360)
T PRK07392 60 RELRLALAQH----HQLPPE--WILPGNGAAELLTWAGREL-A--QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQ 130 (360)
T ss_pred HHHHHHHHHH----hCcChh--hEEECCCHHHHHHHHHHHh-C--CCCeEEEECCCcHHHHHHHHHcCCeEEEEeccccc
Confidence 3555555544 477654 5999999999998877664 2 66799999999999999999999999999997544
Q ss_pred c-----cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 218 E-----IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 218 ~-----~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
. .|++.+++.. . .+.+++++++.|+||.+-+.++|.++++++++ +++|++|..+..+.. ..+..
T Consensus 131 ~~~~~~~~~~~~~~~~-~---~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~------~IiDE~y~~~~~~~~-~~s~~ 199 (360)
T PRK07392 131 PSPGLTLRLQTLPPQL-T---PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL------VVVDEAFMDFLPPDA-EQSLI 199 (360)
T ss_pred CCcccccCHHHHHHhc-c---CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE------EEEECchhhhccCcc-ccchH
Confidence 3 3555555432 2 23478888999999999999999999999975 566999987654321 11111
Q ss_pred CC-ccc-ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH-H
Q 011842 293 SF-KKP-IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ-K 368 (476)
Q Consensus 293 ~~-~~~-~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~-~ 368 (476)
.. ... --++..|+.|.++ .++++|++++++++++.+...... .+ ...+.++++...+....+. .
T Consensus 200 ~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~~---------~~---~s~~~q~~~~~~l~~~~~~~~ 267 (360)
T PRK07392 200 PCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRDP---------WP---VNGLAAAAAIAALADRDFQQQ 267 (360)
T ss_pred HHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCCC---------CC---CCHHHHHHHHHHhccHHHHHH
Confidence 11 111 1256678889887 899999999988876655321111 11 1235555555555333333 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh----h--ceeec-c------cCCEEEEEEcCCCCHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV----R--RWQLA-C------QGNIAHVVVMPNVTID 434 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~----~--~~~l~-~------~~~~lRv~~~~~~T~e 434 (476)
..+...++++++.+.|+..+...+.++.++.+.+..+. ..++. + ++.+. . ..+++|+++. +.+
T Consensus 268 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~ 344 (360)
T PRK07392 268 TWAWLPPAREALFQGLASLPGLTPLPSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEA 344 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEECCCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHH
Confidence 34556677888999998863333444556666666553 22222 2 23331 1 1368999984 456
Q ss_pred HHHHHHHHHHHHH
Q 011842 435 KLDDFLNELIENR 447 (476)
Q Consensus 435 did~~~~~l~~~~ 447 (476)
+.++|.++|+++.
T Consensus 345 ~~~~l~~al~~~~ 357 (360)
T PRK07392 345 ENQRLLEALAAIL 357 (360)
T ss_pred HHHHHHHHHHHHh
Confidence 6677877776654
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=164.04 Aligned_cols=220 Identities=14% Similarity=0.081 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~~~ 216 (476)
.+++.+.++++.|.+. .+++++|+.|+..++.+... +|+.|+++...|.+... .+...|++++.++ +.
T Consensus 71 ~~~Le~~lA~l~g~~~----av~~sSG~aAi~~al~all~--~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~- 142 (436)
T PRK07812 71 QDVVEQRIAALEGGVA----ALLLASGQAAETFAILNLAG--AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP- 142 (436)
T ss_pred HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHhC--CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-CC-
Confidence 3455666888888864 78999999999998887765 89999999988876543 3344688887775 22
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
.|++.+++++.++++ +|++.+++|++|.+.|+++|+++|++||+ +++||++++.+... .....
T Consensus 143 --~d~e~l~~ai~~~tk---lV~ie~~sNp~G~v~Dl~~I~~la~~~gi-----~liVD~t~a~~~~~-------~pl~~ 205 (436)
T PRK07812 143 --DDLDAWRAAVRPNTK---AFFAETISNPQIDVLDIPGVAEVAHEAGV-----PLIVDNTIATPYLI-------RPLEH 205 (436)
T ss_pred --CCHHHHHHhCCCCCe---EEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCcccccC-------Cchhc
Confidence 289999998877665 88899999999999999999999999999 99999998754432 11123
Q ss_pred cccEEEEcCCCCCCCCC-CceeEEeehhhh--hhh------cCCccccCC------C-C---------CcccCCCCChhH
Q 011842 297 PIGSVSVSGHKFVGCPM-PCGVQITRMEHI--NVL------SSNVEYLAS------R-D---------ATIMGSRNGHAP 351 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~--~~l------~~~~~yl~~------~-~---------~~~~~sr~~~~~ 351 (476)
++|+++.|+|||++++. .+|.+++..... +.. ...++|... . . ....|.. ..+
T Consensus 206 GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--l~p 283 (436)
T PRK07812 206 GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSA--ISP 283 (436)
T ss_pred CCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCC--CCH
Confidence 49999999999998542 255555543211 000 111222110 0 0 0001222 123
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
...|. ...|.+.+..++++..++|..+.+.|++.+.
T Consensus 284 ~~a~l--~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~ 319 (436)
T PRK07812 284 FNAFL--IAQGLETLSLRIERHVANAQRVAEFLEARDE 319 (436)
T ss_pred HHHHH--HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44443 3446788999999999999999999999864
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=162.85 Aligned_cols=263 Identities=14% Similarity=0.077 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEe
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVD 212 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~ 212 (476)
..++|+. ++++.+ . ..+++++|+.|+..++.+... ||+.|+++.+.|+.+...+ +..|++++.++
T Consensus 53 ~~~Le~~----lA~l~~--~---~~v~~~sG~~Ai~~~l~all~--~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 53 WRALEAA----LGELEG--A---EALVFPSGMAAITAVLRALLR--PGDTVVVPADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred HHHHHHH----HHHHcC--C---CEEEECCHHHHHHHHHHHhcC--CCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 3455555 555552 2 277888889998888777644 8999999999997776544 34699999998
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
.++.+ + .+.++++ +|++.+++|++|.+.|+++|+++|+++|+ +++||++|+.... . . .+
T Consensus 122 ~~~~~-------~-~~~~~t~---lV~le~p~NPtg~v~di~~I~~~a~~~g~-----~lvVD~t~~~~~~---~-~-p~ 180 (366)
T PRK07582 122 TAGMA-------E-AALAGAD---LVLAETPSNPGLDVCDLAALAAAAHAAGA-----LLVVDNTTATPLG---Q-R-PL 180 (366)
T ss_pred CCChH-------H-HhccCce---EEEEECCCCCCCCccCHHHHHHHHHHcCC-----EEEEECCCCCccc---c-C-ch
Confidence 75321 1 2223443 78888999999999999999999999999 9999999853211 0 0 12
Q ss_pred CCcccccEEEEcCCCCCCCCCC--ceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
+ ..+|+++.|+|||++++.+ .|++++++ ++.+.+.....+. +.. ..++..|..++. .+.+..+
T Consensus 181 ~--~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~--------g~~--~~~~~a~l~~r~--l~tl~~R 246 (366)
T PRK07582 181 E--LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLA--------GAI--PGPFEAWLAHRS--LGTLGLR 246 (366)
T ss_pred h--cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHh--------CCC--CCHHHHHHHHhc--cccHHHH
Confidence 2 2479999999999987665 68888764 4444443222222 111 124556655544 4567888
Q ss_pred HHHHHHHHHHHHHHHHhcCCeE-ee-c-----C-----------CeeEEEEecCCcH---HHhhceeec-----------
Q 011842 370 VQKCLRNAHYLKDRLLDAGISA-ML-N-----E-----------LSSTVVFERPQDE---EFVRRWQLA----------- 417 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~-~~-~-----~-----------~~~iv~f~~~~~~---~~~~~~~l~----------- 417 (476)
+++..+++..+.+.|++.+... +. | | ...+++|...+.+ .+.+.+.+.
T Consensus 247 ~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~G~~~s 326 (366)
T PRK07582 247 FARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSFGGVHT 326 (366)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccCCCccc
Confidence 8999999999999999986432 22 1 2 2467888875422 233333221
Q ss_pred -----------ccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 418 -----------CQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 418 -----------~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
...+.+|+++....+++.|+.|.++|.+
T Consensus 327 l~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 327 SADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred hhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 0125789999988877777777777653
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-17 Score=166.30 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
...+++.+.++++.|.+. .+++++|+.|+..++.+... +|++|+++...|.+.. ..+...|++++.++ +
T Consensus 69 pt~~~le~~la~l~g~~~----~v~fsSG~~Ai~~al~~ll~--~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~ 141 (437)
T PRK05613 69 PTVEALENRIASLEGGVH----AVAFASGQAAETAAILNLAG--AGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N 141 (437)
T ss_pred hHHHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHhcC--CCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence 445566677888888753 77888888999887776643 8999999999998763 44566799999997 3
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.. |+++|+++|.++++ +|++.+.++++|.+.|+++|+++|+++|+ +++||++++.+... .. +
T Consensus 142 ~~---d~e~l~~~l~~~tk---~V~~e~~~Np~~~v~di~~I~~la~~~gi-----~livD~t~a~g~~~--~p---~-- 203 (437)
T PRK05613 142 PD---DPESWQAAVQPNTK---AFFGETFANPQADVLDIPAVAEVAHRNQV-----PLIVDNTIATAALV--RP---L-- 203 (437)
T ss_pred CC---CHHHHHHhCCccCe---EEEEECCCCCCCcccCHHHHHHHHHHcCC-----eEEEECCCcccccc--Ch---H--
Confidence 22 89999999987765 67777889999999999999999999999 99999998754331 10 1
Q ss_pred cccccEEEEcCCCCCCCC-CCceeEEe-ehhhh-hhhc---CCccccCCCCC------------------------cccC
Q 011842 295 KKPIGSVSVSGHKFVGCP-MPCGVQIT-RMEHI-NVLS---SNVEYLASRDA------------------------TIMG 344 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p-~~~G~l~~-~~~~~-~~l~---~~~~yl~~~~~------------------------~~~~ 344 (476)
..++|+++.|+|||++++ -+.|.+++ +.+.. .... ....++...+. ...|
T Consensus 204 ~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 283 (437)
T PRK05613 204 ELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTG 283 (437)
T ss_pred HhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcC
Confidence 124899999999999853 23455555 33210 0000 00000000000 0011
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
.. ..+...|..+ .|.+.+..++++..++|..+.+.|++.+.
T Consensus 284 ~~--~~p~~a~l~~--rgl~TL~lR~~~~~~nA~~lA~~L~~hp~ 324 (437)
T PRK05613 284 AT--LSPFNAWVTA--QGLDTLSLRLERHNENAIKVAEFLNNHEK 324 (437)
T ss_pred CC--CCHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 11 2234455433 46678899999999999999999999874
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-16 Score=161.49 Aligned_cols=278 Identities=14% Similarity=0.072 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--------CCCcE-EEecCCCchHHHHHHHHcCC---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--------FPDGI-LYASRESHYSVFKAARMYRM--- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--------~p~~~-Vl~s~~~H~S~~~~~~~~G~--- 206 (476)
+...++.+.++++.+.+ ..+++++||+||..|+.++|.. ..+.. |..+...|.+...+..+.+.
T Consensus 82 ~~~~~l~~~l~~~~~~~----~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~ 157 (396)
T PRK04073 82 DQLGPWYEKVAKLTGKD----MVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEY 157 (396)
T ss_pred HHHHHHHHHHHhcCCCC----eEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccc
Confidence 34455667777777653 3899999999999999999753 12244 44545566555555444432
Q ss_pred ---------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|.+ |+++|++.+.+++ .+|+++.+.+++|.+.| +++|.++|++||+ +++
T Consensus 158 ~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~~---~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----lli 224 (396)
T PRK04073 158 KRGFGPMLPGIKKIPYG-----DLEALKAAITPNT---AAFLVEPIQGEAGINIPPEGFLKAARELCKEENV-----LFI 224 (396)
T ss_pred ccCCCCCCCCceEeCCC-----CHHHHHHhcccCe---EEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 12334433 7899999886544 47888888899999865 8999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.++... ..... .+... ..|.+++ .|.++.+ +++|+++.++++.+.+..... ..++.+ .+
T Consensus 225 ~DEv~~g~g~~-g~~~~-~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~~i~~~~~~~~~-----~~t~~~-----~~ 290 (396)
T PRK04073 225 ADEIQTGLGRT-GKLFA-CDWDNVTPDMYIL--GKALGGGVFPISCVAANRDILGVFTPGSH-----GSTFGG-----NP 290 (396)
T ss_pred EecchhCCCcC-cHHHH-hhhcCCCCCEEEe--cccccCCCCcceEEEEcHHHHhhhcCCCC-----CCCCCC-----CH
Confidence 99999864321 11100 11111 2677765 4887766 899999999887765532111 112222 23
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEecCC-cHHHh-----hceee-cccCCE
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM--LNELSSTVVFERPQ-DEEFV-----RRWQL-ACQGNI 422 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~~~-~~~~~-----~~~~l-~~~~~~ 422 (476)
+.+++++..+..-.-....++..++.++|.+.|++.+...+ ..+..+++.+..+. ...+. ++..+ +...+.
T Consensus 291 ~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 370 (396)
T PRK04073 291 LACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKETHETV 370 (396)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEecCCCCE
Confidence 44444444432100123556677789999999988643212 22334555555443 22232 23333 233478
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+|++.+..+|+|+||+++++|+++.
T Consensus 371 iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 371 IRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEECCcccCHHHHHHHHHHHHHHh
Confidence 9999988899999999999998763
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-16 Score=159.56 Aligned_cols=281 Identities=12% Similarity=0.031 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh----CCCcEEEecCCCchHHHH--HHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV----FPDGILYASRESHYSVFK--AARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~----~p~~~Vl~s~~~H~S~~~--~~~~~G~~v~~v 211 (476)
.+...++++.+++++|. . .+++++|++|+..++..++.. .++.+|+.+...|.|+.. .....+.+++.+
T Consensus 90 ~~~~~~l~~~la~~~~~-~----~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~ 164 (402)
T PRK07505 90 SQILKDLEEALSELFGA-S----VLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETI 164 (402)
T ss_pred hHHHHHHHHHHHHHhCC-C----EEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEe
Confidence 46778888899999986 2 666778889999888765431 133467777788988743 222245678888
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccc-ccccccccC-
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFG-LMMPFVKKA- 289 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g-~~~~~~~~~- 289 (476)
|.+ |+++|++++.++++ +++++.|.+++|.+.|+++|.++|++||+ ++++|++|+. ++.+.....
T Consensus 165 ~~~-----d~~~l~~~~~~~~~---~~vl~~p~~~~G~~~~~~~i~~l~~~~~~-----~li~DEa~~~~~~g~~g~~~~ 231 (402)
T PRK07505 165 DHN-----DLDALEDICKTNKT---VAYVADGVYSMGGIAPVKELLRLQEKYGL-----FLYIDDAHGLSIYGKNGEGYV 231 (402)
T ss_pred CCC-----CHHHHHHHHhcCCC---EEEEEecccccCCcCCHHHHHHHHHHcCC-----EEEEECcccccCcCCCCCchH
Confidence 875 89999999876543 67777888999999999999999999999 9999999852 222222111
Q ss_pred -CCCCC-cccccEEEEcCCCCCCCCCCceeEEe-ehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 290 -PKVSF-KKPIGSVSVSGHKFVGCPMPCGVQIT-RMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 290 -~~~~~-~~~~Dsi~~s~hK~l~~p~~~G~l~~-~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
..+.. .....+++.++.|.++.+ .|++++ +++..+.+.. ...| ++.++.+........+++..+..+.
T Consensus 232 ~~~~~~~~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~------t~~~~~~~~a~aa~~a~l~~~~~~~ 303 (402)
T PRK07505 232 RSELDYRLNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPL------AFSQSLNVAALGAILASAEIHLSEE 303 (402)
T ss_pred HHHcCCCCCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCc------eeCCCCCHHHHHHHHHHHHHHhccC
Confidence 01121 112346667888988754 377665 4455555432 1112 2333333222333444454444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeecc--------cCCEEEEEEcC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLAC--------QGNIAHVVVMP 429 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~~--------~~~~lRv~~~~ 429 (476)
+.+..+++.++.+.+.+.+... .......+..+..+. ...+. +++.+.. ..+.+|+++..
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~ 379 (402)
T PRK07505 304 LDQLQQKLQNNIALFDSLIPTE----QSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA 379 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc
Confidence 5555555555555444332211 011222333332222 12221 2333321 23689999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~ 448 (476)
.+|++|+++++++|+++.+
T Consensus 380 ~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 380 SHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-16 Score=156.69 Aligned_cols=263 Identities=13% Similarity=-0.012 Sum_probs=174.6
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
.+++.+++.+|.+ ++++|+|+++++...+.+ .||+.|++.+++|..+...++.+|++++.||.+
T Consensus 53 ~Lr~~ia~~~~~~----~I~it~Gs~~al~~~~~~----~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~-------- 116 (330)
T PRK05664 53 GLEAAARAYYGAP----QLLPVAGSQAAIQALPRL----RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA-------- 116 (330)
T ss_pred HHHHHHHHHhCCC----CEEECcCHHHHHHHHHHc----cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh--------
Confidence 3445566666753 399999999998766432 389999999999999999999999999999763
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc-c
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP-I 298 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~-~ 298 (476)
++++.+. +++ ++++++|+|+||.+-+ +++|+++|+++++ +|++|++|..+. +. .+....... -
T Consensus 117 ~~~~~~~-~~~---~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~-----~iI~DE~y~~~~-~~---~s~~~~~~~~~ 183 (330)
T PRK05664 117 EVEAALD-SLD---VLVVVNPNNPTGRRFDPARLLAWHARLAARGG-----WLVVDEAFMDNT-PQ---HSLAACAHRPG 183 (330)
T ss_pred hHhhhhc-CCC---EEEEeCCcCCCCCccCHHHHHHHHHHHHhcCC-----EEEEECCcccCC-Cc---ccccccccCCC
Confidence 4555553 344 6777789999999966 5666677789999 999999996442 11 111111111 1
Q ss_pred cEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHH
Q 011842 299 GSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRN 376 (476)
Q Consensus 299 Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~ 376 (476)
-++..|+.|.++ +++++|+++++.++++.+.....+. ..+ .+.++++...+.. .-.++..++..++
T Consensus 184 vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~-------~~~-----~~~~~~~~~~L~~~~~~~~~~~~~~~~ 251 (330)
T PRK05664 184 LIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPW-------TVS-----GPTRWLAQAALADTPWQRRQRERLLAA 251 (330)
T ss_pred EEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCCC-------CCC-----HHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 256788899886 8999999999887766653221110 111 2333333333322 2245566777788
Q ss_pred HHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeecc--cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 377 AHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLAC--QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 377 a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~~--~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++++.+.|++.++. ......+.+.++.++..++.+ ++.+.. ..+.+|+++.. +.+++++|+++|+++.++
T Consensus 252 r~~l~~~L~~~~~~-~~~~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~~~~~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 252 SQRLAALLRRHGLT-PAGGCALFQWVRTEDAAALHEFLARRGILTRLFEQPASLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHCCCc-ccCCcceEEEEecCCHHHHHHHHHHCCeEEEECCCCCeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 99999999988752 111122455555554433322 333321 34689998864 789999999999887654
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=153.32 Aligned_cols=272 Identities=16% Similarity=0.082 Sum_probs=198.6
Q ss_pred HHHHHHHHcC-CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 144 VLDWFARLWE-LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 144 ~~~~la~l~g-~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
+.+.+++.+| .+. ..+++++|+++.+...+++.+. ||+.|++..+++..+...++..|++++.+|.++ +.+|++
T Consensus 62 l~~a~a~~~~~~~~--~~V~~gnGsde~i~~l~~~~~~--~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~ 136 (356)
T COG0079 62 LRAALAEYYGVVDP--ENVLVGNGSDELIELLVRAFVE--PGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLD 136 (356)
T ss_pred HHHHHHHHhCCCCc--ceEEEcCChHHHHHHHHHHhhc--CCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHH
Confidence 3344566677 443 3477899999999988888887 899999999999999999999999999999987 999999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCc-ccc-
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK-KPI- 298 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~-~~~- 298 (476)
.+.+.+.++++ +|++++|.|+||..-+.++|.++++.. +. ++++|+||.-+.-+. . .... ..-
T Consensus 137 ~~~~~~~~~~~---lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~-----~vVvDEAY~eF~~~~--~---~~l~~~~~n 203 (356)
T COG0079 137 AILAAIRDKTK---LVFLCNPNNPTGTLLPREELRALLEALPEGG-----LVVIDEAYIEFSPES--S---LELLKYPPN 203 (356)
T ss_pred HHHHhhhcCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCc-----EEEEeCchhhcCCch--h---hhhccCCCC
Confidence 99999988655 888999999999999888888888864 66 999999986543311 1 1111 111
Q ss_pred cEEEEcCCC-CCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHH
Q 011842 299 GSVSVSGHK-FVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLR 375 (476)
Q Consensus 299 Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~ 375 (476)
-++.=++.| |..++.++|+.+.++++++.+.. ..+|- ...+++.++..++.. +-+++.+++..+
T Consensus 204 livlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~-------------v~~~a~~aa~aal~~~~~~~~~~~~~~~ 270 (356)
T COG0079 204 LIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN-------------VSSPALAAAIAALRDADYLEESVERIRE 270 (356)
T ss_pred EEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 255667778 55789999999999888776643 22331 112444444444422 456778888889
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCCcH--HHhh-----ceee-cc-----cCCEEEEEEcCCCCHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQDE--EFVR-----RWQL-AC-----QGNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~--~~~~-----~~~l-~~-----~~~~lRv~~~~~~T~edid~~~~~ 442 (476)
.++++.+.|+..|+..+.+..+|.+.++.+... .+.+ ++.+ .+ ..+++||++ =|+|+.++|+++
T Consensus 271 ~r~rl~~~l~~~~~~~v~pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitv---gt~een~~ll~A 347 (356)
T COG0079 271 ERERLYAALKALGLFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITV---GTPEENDRLLAA 347 (356)
T ss_pred HHHHHHHHHHhCCCCeecCCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEe---CCHHHHHHHHHH
Confidence 999999999999844366666899988886411 2222 2222 12 135899988 478888999999
Q ss_pred HHHHHHH
Q 011842 443 LIENRST 449 (476)
Q Consensus 443 l~~~~~~ 449 (476)
|+++.+.
T Consensus 348 L~~~~~~ 354 (356)
T COG0079 348 LREVLKG 354 (356)
T ss_pred HHHHHhc
Confidence 9887653
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-17 Score=162.93 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-C-CeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-R-MECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G-~~v~~v~~~ 214 (476)
..++|+. ++++.|.+. +++++||++|+..++. +.. ||++|+++...|..-....... . ..+. +
T Consensus 56 ~~~le~~----lA~leg~~~----~v~~~sG~aAi~~~l~-~l~--~GD~VI~~~~~yg~~~~~~~~~~~~~~~~-~--- 120 (364)
T PRK07269 56 RAKLEET----LAAIESADY----ALATSSGMSAIVLAFS-VFP--VGSKVVAVRDLYGGSFRWFNQQEKEGRFH-F--- 120 (364)
T ss_pred HHHHHHH----HHHHhCCCe----EEEeCCHHHHHHHHHH-HhC--CCCEEEEecCCcCchHHHHHHHHhcCcEE-E---
Confidence 4455555 666667543 8999999999998874 333 8999999887764433222111 0 0111 1
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
++..|+++++++|+++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++|+..+.. . ..
T Consensus 121 -~~~~d~~~l~~~i~~~Tk---lV~lesP~NPtg~~~di~~I~~la~~~gi-----~vvvD~t~~~~~~~----~---pl 184 (364)
T PRK07269 121 -TYANTEEELIAAIEEDTD---IVYIETPTNPLMVEFDIEKVAKLAHAKGA-----KVIVDNTFYSPIYQ----R---PI 184 (364)
T ss_pred -EecCCHHHHHHhcCcCce---EEEEECCCCCCCeeeCHHHHHHHHHHcCC-----EEEEECCCcccccC----C---ch
Confidence 123489999999987776 88899999999999999999999999999 99999998654321 1 11
Q ss_pred cccccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
...+|+++.|++|+++++.. .|+++++++ +.+.+.....+ .|.. ..++..|..+. +.+.+..+++
T Consensus 185 ~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~--------~G~~--~s~~~a~l~~~--~L~tL~~r~~ 252 (364)
T PRK07269 185 ELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNT--------TGAV--LSPFDSYLLMR--GLKTLSLRME 252 (364)
T ss_pred hhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHH--------hCCC--CCHHHHHHHHc--CCCcHHHHHH
Confidence 23489999999999987665 677777654 44443211111 1211 23456665554 4567899999
Q ss_pred HHHHHHHHHHHHHHhcCC-eEe-ecCCeeEEEEecCC
Q 011842 372 KCLRNAHYLKDRLLDAGI-SAM-LNELSSTVVFERPQ 406 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~-~~~-~~~~~~iv~f~~~~ 406 (476)
+..+++.++.+.|++.+. ..+ .|+...+++|....
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred HHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 999999999999998763 333 45667788887643
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-16 Score=160.42 Aligned_cols=288 Identities=10% Similarity=-0.011 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCC---------
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM--------- 206 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~--------- 206 (476)
+..++++++++++.+. ++++ .++++|+|+++++... ..... +++.|+++.++|..+...++..|+
T Consensus 76 g~~~lr~aia~~~~~~-~~~~--d~I~it~Ga~~al~~l-~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~ 149 (402)
T TIGR03542 76 GYPFLREAIAENDYRG-RIDP--EEIFISDGAKCDVFRL-QSLFG--SDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGR 149 (402)
T ss_pred CCHHHHHHHHHHHHhc-CCCH--HHEEECCCcHHHHHHH-HHhcC--CCCEEEEeCCCCcchHHHHHHcCCccccccccc
Confidence 5678888888875332 4554 3599999999998764 33333 889999999999999999999999
Q ss_pred --eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 207 --ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 207 --~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
+++.+|+++++.++++ +++ .+ ++.+|++++++|+||.+-+ +++|+++|++|++ +|++|++|..+
T Consensus 150 ~~~~~~v~~~~~~~~~~~-~~~--~~---~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~-----~iI~De~y~~~ 218 (402)
T TIGR03542 150 YSKITYLPCTKENNFIPD-LPE--EP---KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGS-----LILFDAAYSAF 218 (402)
T ss_pred cceEEEeecchhhCCCCC-ccc--cC---CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCe-----EEEEEchhhhh
Confidence 9999998644333332 111 12 2347777899999999976 8889999999999 99999999865
Q ss_pred cccccccCCCCCCcc--cccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcC--CccccCCCCCcccCCCCChhHHHHHH
Q 011842 282 MMPFVKKAPKVSFKK--PIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSS--NVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~--~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
........+...... ...+++.|+.|.+ ..++++|+++++++++..... ...+......+.. + ...+.+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-~---~s~~~q~~ 294 (402)
T TIGR03542 219 ISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFN-G---ASYPVQRA 294 (402)
T ss_pred ccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhccc-C---CCHHHHHH
Confidence 432211111111111 1234567889988 488999999998776411000 0000000000000 1 11234444
Q ss_pred HHHHhCh---hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHhh------ceee-cc-----
Q 011842 357 TLNRKGY---KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFVR------RWQL-AC----- 418 (476)
Q Consensus 357 ~l~~~g~---~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~~------~~~l-~~----- 418 (476)
+...+.. ..+++.++.+.++++++.+.|++.++....+..++.+.+..+. +.++.+ +..+ +.
T Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~ 374 (402)
T TIGR03542 295 AEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGP 374 (402)
T ss_pred HHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence 3333322 2244556667788888999998887543333356667777653 223221 2333 11
Q ss_pred -cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 -QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 -~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+++|+++.. ++++++..++.|+++
T Consensus 375 ~~~~~iRis~~~--~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 375 SGEGFVRFSAFG--KRENIVEACERIKEA 401 (402)
T ss_pred CCCCEEEEEecC--CHHHHHHHHHHHHhh
Confidence 13689998643 788888888877653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-16 Score=156.50 Aligned_cols=282 Identities=16% Similarity=0.088 Sum_probs=190.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
...++|++ +++++|... .+.+++||.|+.++++++- ..|||+||++..++.+-..++-+.|++++.|++|+
T Consensus 35 ~v~~FE~~----~ae~~G~k~----ava~~sgT~AL~laL~al~-ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~ 105 (374)
T COG0399 35 FVRRFEQA----FAEYLGVKY----AVAVSSGTAALHLALLALA-IGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP 105 (374)
T ss_pred HHHHHHHH----HHHHhCCCe----EEEecChHHHHHHHHHhcC-CCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCC
Confidence 45566665 778889886 8999999999999998543 45999999999999999999999999999999995
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
++.||++.||++|+++++ .|++.+- .|..-|+++|.++|++||+ +|+.|+||+.+..-..+.. +
T Consensus 106 ~T~nid~~~ie~aIt~~tK---AIipVhl---~G~~~dm~~i~~la~~~~l-----~vIEDaAqa~Ga~y~gk~v----G 170 (374)
T COG0399 106 DTLNIDPDLIEAAITPRTK---AIIPVHL---AGQPCDMDAIMALAKRHGL-----PVIEDAAQAHGATYKGKKV----G 170 (374)
T ss_pred cccCCCHHHHHHHcccCCe---EEEEehh---ccCCCCHHHHHHHHHHcCC-----eEEEEcchhccCeecCccc----c
Confidence 589999999999998876 5555443 3888899999999999999 9999999985432222221 1
Q ss_pred ccc-ccEEEEcCCCCCCCCCCceeEEeehh-hhhh---hcC---C----ccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 295 KKP-IGSVSVSGHKFVGCPMPCGVQITRME-HINV---LSS---N----VEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 295 ~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~---l~~---~----~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
.-+ +-++++.+.|.+.++ ..|+++++++ +.+. +.. . ..|.. ...|..... -.+-+++-...
T Consensus 171 t~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~----~~~G~N~rm--~~iqAAigl~Q 243 (374)
T COG0399 171 SFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLH----EELGYNYRL--TEIQAAIGLAQ 243 (374)
T ss_pred cccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCcccccee----eecccccCH--HHHHHHHHHHH
Confidence 112 566777788999987 7788888876 3322 211 1 12221 111221111 22233333334
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CC---e--eEEEEecCCc----HHHh----hc-----ee-ec-----
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-EL---S--STVVFERPQD----EEFV----RR-----WQ-LA----- 417 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~--~iv~f~~~~~----~~~~----~~-----~~-l~----- 417 (476)
.+.+++..++-.+++++..+.|++.+...+.. +. + .......+.. +.+. .. .. .+
T Consensus 244 L~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~~P~~~~~ 323 (374)
T COG0399 244 LERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYFRPLHLQP 323 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEeeccccch
Confidence 56778888888999999999999875322221 11 1 1111222211 1111 11 00 00
Q ss_pred --------------c----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 418 --------------C----QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 418 --------------~----~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
. ....+.+=++|..|.+|+++++++|+++..
T Consensus 324 ~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 324 AYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred hhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence 0 024566668999999999999999988764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=161.88 Aligned_cols=211 Identities=14% Similarity=0.137 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLI 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~ 215 (476)
...++.+.++++.|.+. .+++++|+.++..++ .... ||+.|+++.+.|.+.. ..+...|++++.++..
T Consensus 51 ~~~~Le~~lA~l~g~~~----~~~~~sG~aai~~~~-~~l~--~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 122 (377)
T PRK07671 51 TRAALEELIAVLEGGHA----GFAFGSGMAAITAVM-MLFS--SGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTS- 122 (377)
T ss_pred HHHHHHHHHHHHhCCCc----eEEeCCHHHHHHHHH-HHhC--CCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCC-
Confidence 34456666888888764 577888877665543 3433 8999999999887433 2345578999888754
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|.++|+++|+ ++++|++|+..... .. + .
T Consensus 123 ----d~~~l~~ai~~~tk---lV~le~P~NPtg~~~dl~~I~~la~~~g~-----~lvvD~a~~~~~~~--~p---~--~ 183 (377)
T PRK07671 123 ----NLEEVEEAIRPNTK---AIYVETPTNPLLKITDIKKISTIAKEKGL-----LTIVDNTFMTPYWQ--SP---I--S 183 (377)
T ss_pred ----CHHHHHHhcCCCCe---EEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCCCccccC--Ch---h--h
Confidence 89999999987765 88889999999999999999999999999 99999999754332 10 1 1
Q ss_pred ccccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
..+|+++.|++||+++|.. .|+++++++ +.+.+.....+. ++. ..+...|..++ +.+.+..++++
T Consensus 184 ~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~--------g~~--~~~~~a~l~~~--~l~tl~~R~~~ 251 (377)
T PRK07671 184 LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNST--------GGI--LGPQDSWLLLR--GLKTLGIRMEE 251 (377)
T ss_pred hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhh--------cCC--CCHHHHHHHHc--CcChHHHHHHH
Confidence 2479999999999997753 566777654 444443222222 111 22455565554 45667788999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 011842 373 CLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~ 389 (476)
..+++..+.+.|++.+.
T Consensus 252 ~~~na~~la~~L~~~~~ 268 (377)
T PRK07671 252 HETNSRAIAEFLNNHPA 268 (377)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999998764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=164.34 Aligned_cols=218 Identities=16% Similarity=0.114 Sum_probs=154.0
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~g 217 (476)
.++.+.++++.|.+. .+++++|+.|+..++.+... ||+.|+++...|.+.. ..+...|++++.++.+
T Consensus 66 ~~le~~lA~l~g~~~----al~~~SG~~Ai~~al~all~--pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 136 (427)
T PRK05994 66 AVLEERVAALEGGTA----ALAVASGHAAQFLVFHTLLQ--PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD--- 136 (427)
T ss_pred HHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHHhC--CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC---
Confidence 345556788888764 78999999999999888765 9999999999987543 4466789999998864
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|++++++++.++++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.++.. .....+
T Consensus 137 --d~~~l~~ai~~~tk---lV~vesp~NptG~v~dl~~I~~la~~~gi-----~livD~a~a~~~~~-------~pl~~g 199 (427)
T PRK05994 137 --DPASFERAITPRTK---AIFIESIANPGGTVTDIAAIAEVAHRAGL-----PLIVDNTLASPYLI-------RPIEHG 199 (427)
T ss_pred --CHHHHHHhcCcCCe---EEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCccccccC-------CccccC
Confidence 89999999977665 88888999999999999999999999999 99999999754332 111234
Q ss_pred ccEEEEcCCCCCCCCCC-ceeEEeehhhhhhh-cCCccccCCCCC-------------------------cccCCCCChh
Q 011842 298 IGSVSVSGHKFVGCPMP-CGVQITRMEHINVL-SSNVEYLASRDA-------------------------TIMGSRNGHA 350 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~-~G~l~~~~~~~~~l-~~~~~yl~~~~~-------------------------~~~~sr~~~~ 350 (476)
+|+++.|+|||++.+.+ .|.+++......-. .+...++...+. ...|.. ..
T Consensus 200 aDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~ 277 (427)
T PRK05994 200 ADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPA--IS 277 (427)
T ss_pred CcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCC--CC
Confidence 99999999999996543 45555532110000 000011111000 001111 12
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 351 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
++..|. -..|.+.+..++++..+++.++.+.|++.+.
T Consensus 278 ~~~A~l--~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~ 314 (427)
T PRK05994 278 PFNAFL--ILTGIETLPLRMQRHSDNALAVAEWLKGHPK 314 (427)
T ss_pred HHHHHH--HHcCcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334443 3345678899999999999999999999864
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=147.80 Aligned_cols=164 Identities=24% Similarity=0.165 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH-HHHHHcCCeEEEEeCCCCCccC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF-KAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~-~~~~~~G~~v~~v~~~~~g~~D 220 (476)
.+++++++++++.+. .++++++|||+|+..++.+++. +++.|++++..|.+.. ..++..|++++.++.+.++..+
T Consensus 3 ~~~~~~l~~~~~~~~--~~~~~~~~~t~a~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 78 (170)
T cd01494 3 EELEEKLARLLQPGN--DKAVFVPSGTGANEAALLALLG--PGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGG 78 (170)
T ss_pred HHHHHHHHHHcCCCC--CcEEEeCCcHHHHHHHHHHhCC--CCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccc
Confidence 356677888886432 3589999999999999988865 6889999999999988 8888999999999987654433
Q ss_pred H--HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc-cc
Q 011842 221 C--ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK-KP 297 (476)
Q Consensus 221 ~--~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~-~~ 297 (476)
. +.+++... +.+|.+++++++++++|...|+++|.++|+++|+ ++|+|++|+++...... ++.. ..
T Consensus 79 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~-----~li~D~a~~~~~~~~~~----~~~~~~~ 147 (170)
T cd01494 79 LDVAILEELKA--KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGI-----LLLVDAASAGGASPAPG----VLIPEGG 147 (170)
T ss_pred hhhhhhhhccc--cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCC-----EEEEecccccccccccc----ccccccc
Confidence 3 24444322 3456789999999999999999999999999999 99999999877654321 1222 34
Q ss_pred ccEEEEcCCCCCCCCCCceeEEee
Q 011842 298 IGSVSVSGHKFVGCPMPCGVQITR 321 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~~G~l~~~ 321 (476)
+|+++.|+|||+++ .++|++++|
T Consensus 148 ~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 148 ADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred CCEEEEEcccccCC-CceEEEEeC
Confidence 89999999999997 899999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-16 Score=159.65 Aligned_cols=210 Identities=15% Similarity=0.136 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH----HHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV----FKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v~~~~~ 216 (476)
...+.+.++++.|.+. .+++++|+.|+..++ .+.. ||+.|+++++.|.+. ...+...|++++.++..
T Consensus 52 ~~~Le~~la~l~g~~~----al~~~SG~~Al~~~l-~~l~--pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~-- 122 (380)
T PRK06176 52 RFALEELIADLEGGVK----GFAFASGLAGIHAVF-SLFQ--SGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS-- 122 (380)
T ss_pred HHHHHHHHHHHhCCCC----EEEECCHHHHHHHHH-HHcC--CCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC--
Confidence 3445566888888764 677888888876544 4443 999999999888654 34456678888888764
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|++++++++.++++ +|+++++++++|.+.|+++|+++|++||+ ++++|++|+..+.. + ....
T Consensus 123 ---d~e~l~~ai~~~t~---lV~lesP~Nptg~~~di~~I~~la~~~gi-----~vivD~t~a~~~~~--~-----p~~~ 184 (380)
T PRK06176 123 ---DLSQIKKAIKPNTK---ALYLETPSNPLLKITDLAQCASVAKDHGL-----LTIVDNTFATPYYQ--N-----PLLL 184 (380)
T ss_pred ---CHHHHHHhcCcCce---EEEEECCCCCCceecCHHHHHHHHHHcCC-----EEEEECCccccccC--C-----cccc
Confidence 89999999977665 88889999999999999999999999999 99999999754332 1 1122
Q ss_pred cccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
.+|+++.|++||+++|.. .|+++.+++ +.+.+.....++ +.. ..+...|..+ .|.+.+..++++.
T Consensus 185 gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~--------G~~--~~~~~~~l~~--~gl~tl~~R~~~~ 252 (380)
T PRK06176 185 GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAI--------GGV--LGPQDSWLLQ--RGIKTLGLRMEAH 252 (380)
T ss_pred CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHh--------cCC--CCHHHHHHHH--hccCcHHHHHHHH
Confidence 489999999999987653 676777654 333332111111 110 1133445443 3567778889999
Q ss_pred HHHHHHHHHHHHhcCC
Q 011842 374 LRNAHYLKDRLLDAGI 389 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~ 389 (476)
.+++..+.+.|++.+.
T Consensus 253 ~~~a~~la~~L~~~p~ 268 (380)
T PRK06176 253 QKNALCVAEFLEKHPK 268 (380)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=160.04 Aligned_cols=217 Identities=16% Similarity=0.052 Sum_probs=152.3
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH---HHHHHHHcCCeEEEEeCCCCCc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS---VFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S---~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
+++.+.++++.|.+. .+++++|+.|+..++.+... ||+.|++++..|.+ +...++..|++++.++..
T Consensus 50 ~~lE~~la~leg~~~----~v~~ssG~~Ai~~~l~all~--~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~---- 119 (397)
T PRK05939 50 AALEAKITKMEGGVG----TVCFATGMAAIAAVFLTLLR--AGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT---- 119 (397)
T ss_pred HHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHHcC--CCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC----
Confidence 344455778888764 67777889999888877755 99999999987653 445567789999999874
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-c
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-P 297 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~ 297 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|+++|+++|+ ++++|++|+.+.. ++..+ +
T Consensus 120 -d~e~l~~~l~~~tk---lV~vesp~NptG~v~dl~~I~~la~~~gi-----~livD~t~a~~~~--------~~~~~~g 182 (397)
T PRK05939 120 -DVQNVAAAIRPNTR---MVFVETIANPGTQVADLAGIGALCRERGL-----LYVVDNTMTSPWL--------FRPKDVG 182 (397)
T ss_pred -CHHHHHHhCCCCCe---EEEEECCCCCCCCHHhHHHHHHHHHHcCC-----EEEEECCcccccc--------cCccccC
Confidence 89999999977665 88889999999999999999999999999 9999999865422 11112 4
Q ss_pred ccEEEEcCCCCCCC-CCCceeEEeehhhhhh---hcCCccccCCC--C----------CcccCCCCChhHHHHHHHHHHh
Q 011842 298 IGSVSVSGHKFVGC-PMPCGVQITRMEHINV---LSSNVEYLASR--D----------ATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~-p~~~G~l~~~~~~~~~---l~~~~~yl~~~--~----------~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
+|++..|++||+++ +..+|++++.+..... ......|.... . ....|+. ..+...|..+ .
T Consensus 183 aDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~p~~a~l~~--r 258 (397)
T PRK05939 183 ASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGAT--LSSEAAHRIA--I 258 (397)
T ss_pred CEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCC--CCHHHHHHHH--c
Confidence 89999999999985 4555666554221100 00000000000 0 0011222 2234455443 4
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
|.+.+..++++..+++..+.+.|++.+.
T Consensus 259 gl~tl~~R~~~~~~na~~la~~L~~~p~ 286 (397)
T PRK05939 259 GAETLALRVDRSCSNALALAQFLEAHPK 286 (397)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6788899999999999999999999874
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-16 Score=159.00 Aligned_cols=214 Identities=10% Similarity=0.014 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDC 213 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~ 213 (476)
....+.+.+.++.+-+.+. .+++++|+.|+..++.+..+ ||+.|+++++.|.++.. .++.+|+++..++.
T Consensus 63 nPt~~~Le~~la~le~~~~----~v~~sSG~aAi~~~l~all~--~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 63 TPTTDALCKAIDALEGSAG----TILVPSGLAAVTVPFLGFLS--PGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred ChHHHHHHHHHHHHhCCCC----EEEECcHHHHHHHHHHHhcC--CCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 3555667777887776442 67888899999988877765 99999999999988764 45777999988865
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+ +.+.+++++.++++ +|.+++++|+++.+.||++|+++|+++|+ +++||++|+..+.. +. ++
T Consensus 137 ~-----~~e~l~~al~~~Tk---lV~lesPsNP~l~v~dl~~I~~la~~~g~-----~vvVD~t~a~p~~~--~p---l~ 198 (395)
T PRK05967 137 E-----IGAGIAKLMRPNTK---VVHTEAPGSNTFEMQDIPAIAEAAHRHGA-----IVMMDNTWATPLYF--RP---LD 198 (395)
T ss_pred C-----CHHHHHHhcCcCce---EEEEECCCCCCCcHHHHHHHHHHHHHhCC-----EEEEECCccCceec--Ch---hH
Confidence 3 45789999987775 89999999999999999999999999999 99999999764321 10 11
Q ss_pred CcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
-++|++..|..||+++- .-.|++..+++..+.+.... . ..|+- ..+...|..+ .|.+.+.-+++
T Consensus 199 --~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~-~-------~~G~~--~~p~da~l~~--rgl~Tl~lR~~ 264 (395)
T PRK05967 199 --FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH-G-------TLGLC--AGPDDTYQIL--RGLRTMGIRLE 264 (395)
T ss_pred --cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH-H-------HcCCC--CCHHHHHHHH--cCcccHHHHHH
Confidence 24999999999997631 12566665655433331110 0 11221 2345566444 46678899999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 011842 372 KCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~ 389 (476)
+..+++..+.+.|++.+.
T Consensus 265 ~~~~na~~lA~~L~~hp~ 282 (395)
T PRK05967 265 HHRKSALEIARWLEGRPD 282 (395)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999999999864
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=157.35 Aligned_cols=281 Identities=14% Similarity=0.083 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC--------CCcEEEecCCC-chHHHHHHHHcCC---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF--------PDGILYASRES-HYSVFKAARMYRM--- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~--------p~~~Vl~s~~~-H~S~~~~~~~~G~--- 206 (476)
....++.+.+++++|.+. .+++++|++||..|+..++... .+..|++.+.+ |.+...+..+.|-
T Consensus 79 ~~~~~l~~~l~~~~~~~~----~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~ 154 (401)
T TIGR01885 79 DVFGEFAEYVTKLFGYDK----VLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDS 154 (401)
T ss_pred HHHHHHHHHHHhhcCCCE----EEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccc
Confidence 455667777888887642 8899999999999999987631 24677777777 4454555544331
Q ss_pred ---------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
++..+|.+ |+++|++.|++...+...|++....+++|.+.| +++|.++|++||+ +++
T Consensus 155 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~-----lli 224 (401)
T TIGR01885 155 RTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNV-----LLI 224 (401)
T ss_pred ccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 24445544 789999999754334446666666888899887 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.++.. ..+... .... ...|+++++ |.++.+ +++|+++.++++.+.+... +. ..++.+.+ ...
T Consensus 225 ~DEv~~g~g~-~G~~~~-~~~~~~~~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~--~~---~~t~~~~p--~~~ 293 (401)
T TIGR01885 225 ADEIQTGLGR-TGKLLC-VDHENVKPDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPG--EH---GSTYGGNP--LAC 293 (401)
T ss_pred EechhhCCCc-cchhhH-HhhcCCCCCEEEee--ccccCCCCCcEEEEEcHHHHhhccCC--CC---CCCCCCCH--HHH
Confidence 9999965322 122110 1111 126877765 887765 7899999988776655321 11 11222221 222
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEE--EecCC----cHHHh-----hceee-c
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM--LNELSSTVV--FERPQ----DEEFV-----RRWQL-A 417 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~--f~~~~----~~~~~-----~~~~l-~ 417 (476)
....++++.+..+ ...++..+++++|++.|++.+...+ ......+.. +..+. ..++. ++..+ +
T Consensus 294 ~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~ 370 (401)
T TIGR01885 294 AVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKP 370 (401)
T ss_pred HHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEe
Confidence 2233444444322 3446777789999999998753222 122222322 33221 11222 23333 3
Q ss_pred ccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 418 ~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
...+.+|++++..+|+++|++++++|++..
T Consensus 371 ~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 371 THGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred cCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 345789999999999999999999998764
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=157.64 Aligned_cols=281 Identities=13% Similarity=0.031 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-------CCCcEEEecCCCchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-------FPDGILYASRESHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-------~p~~~Vl~s~~~H~S~~~~~~~~G~----- 206 (476)
+...++.+.++++.+.+ ..+|+++|++||..|+.++|.. .+..+|......|.+...+..+.+.
T Consensus 77 ~~~~~la~~L~~~~~~~----~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 77 EPVLRLAKKLVDATFAD----KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 44566777788877653 3899999999999999999764 1334566666677776555544432
Q ss_pred -------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEEEe
Q 011842 207 -------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 207 -------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
.+..+|.+ |+++|++.+.++ ..+|+++...++.|.+ +.+++|.++|++||+ ++++|
T Consensus 153 ~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~-----llI~D 219 (397)
T TIGR03246 153 GFAPLPGGIKHAPYN-----DLAAAKALISDK---TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNA-----LLIFD 219 (397)
T ss_pred CCCCCCCceEEeCCC-----CHHHHHHHhccC---eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEe
Confidence 23345544 899999999643 3467776556666744 459999999999999 99999
Q ss_pred cCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 276 GALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 276 ~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
++|.|+.. .........+.-..|++++ .|.+++++++|+++.++++.+.+.... ...++.+.. .......
T Consensus 220 Ev~tG~Gr-~G~~~a~~~~gv~pDi~t~--~K~lggG~pigav~~~~~i~~~~~~~~-----~~~t~~~~p--~~~aaa~ 289 (397)
T TIGR03246 220 EVQTGVGR-TGELYAYMHYGVTPDILTS--AKALGGGFPIGAMLTTTEIAAHLKVGT-----HGTTYGGNP--LACAVAG 289 (397)
T ss_pred chhhcCCc-cccchhhhhcCCCCCEEEe--ehhhhCCcceeEEEEcHHHHHhccCCC-----cCCCCCCCH--HHHHHHH
Confidence 99965522 1111100011112687754 598888899999999988766653211 111222221 1122233
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC----eEeecCCeeEEEEecCC-----cHHHh-----hceee-cccC
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI----SAMLNELSSTVVFERPQ-----DEEFV-----RRWQL-ACQG 420 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~----~~~~~~~~~iv~f~~~~-----~~~~~-----~~~~l-~~~~ 420 (476)
++++.+. -++..++..++.++|.++|++.+. .........++.+...+ ...+. ++..+ +...
T Consensus 290 a~l~~~~---~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~ 366 (397)
T TIGR03246 290 KVLDLVN---TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIAGP 366 (397)
T ss_pred HHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeecCC
Confidence 3444332 245678888899999999988641 11122222333332211 11222 22223 2334
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+.+|++++..+|++|||.++++|+++.++
T Consensus 367 ~~lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 367 NVVRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999887754
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=155.94 Aligned_cols=226 Identities=13% Similarity=0.026 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-G 217 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g 217 (476)
.+.+++.+++++++|.+. +++|+|||+|+..++.++ ...||++|+++..+|.+...++...|++++.++++++ +
T Consensus 31 ~~~~~~e~~la~~~g~~~----~v~~~sgt~aL~~~l~al-~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~ 105 (376)
T TIGR02379 31 PFSRRCETWLENRTGTKK----ALLTPSCTAALEMAALLL-DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTM 105 (376)
T ss_pred HHHHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcC
Confidence 455666777888888753 899999999988877665 2238999999999999999999999999999999865 6
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.+|+++|+++++++++ +|++++ ++|...|+++|.++|++||+ +|++|++|+.+..-..+.. + ..
T Consensus 106 ~~d~~~le~~i~~~tk---~Iip~~---~~G~~~d~~~I~~la~~~~i-----~vIeDaa~~~g~~~~~~~~----g-~~ 169 (376)
T TIGR02379 106 NIDETLIESAITHRTK---AIVPVH---YAGVACDMDTIMALANKHQL-----FVIEDAAQGVMSTYKGRAL----G-SI 169 (376)
T ss_pred CCCHHHHHHhcCcCce---EEEEeC---CCCCccCHHHHHHHHHHCCC-----EEEEECccccCCccCCccc----C-CC
Confidence 7999999999977654 665554 56999999999999999999 9999999985432111111 1 11
Q ss_pred ccEEEEcC--CCCCCCCCCceeEEeehh-hhhhhcCCc-------cccCCC--CC--cccCCCCChhHHHHHHHHHHhCh
Q 011842 298 IGSVSVSG--HKFVGCPMPCGVQITRME-HINVLSSNV-------EYLASR--DA--TIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 298 ~Dsi~~s~--hK~l~~p~~~G~l~~~~~-~~~~l~~~~-------~yl~~~--~~--~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
.|.-++|+ .|.+.++...|+++++++ +.+.+.... .+.... .. ...|......-+.....+. ..
T Consensus 170 ~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~--qL 247 (376)
T TIGR02379 170 GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWA--QL 247 (376)
T ss_pred CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHH--HH
Confidence 24445554 466665546788887754 443332110 000000 00 0012111111122111212 23
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhc
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDA 387 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~ 387 (476)
+.+.+..++.++++++..+.|...
T Consensus 248 ~~l~~~~~~r~~~~~~y~~~L~~~ 271 (376)
T TIGR02379 248 EQADRINQDRLATWQLYQDALKPL 271 (376)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccC
Confidence 556778888888888888888764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-16 Score=160.29 Aligned_cols=217 Identities=13% Similarity=0.087 Sum_probs=150.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~ 218 (476)
++.+.++++.|.+. .+++++|+.|+..++.+... +|+.|+++...|......+ ...|+++..++.+
T Consensus 62 ~Le~~lA~l~g~~~----~l~~ssG~~Ai~~al~al~~--~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~---- 131 (425)
T PRK06084 62 VLEQRVAALEGGVG----ALAVASGMAAITYAIQTIAE--AGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHD---- 131 (425)
T ss_pred HHHHHHHHHhCCCc----eeEehhHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCC----
Confidence 45556778888643 78899999999999888765 8999999988776443333 2246777777643
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+... . ....++
T Consensus 132 -d~e~le~ai~~~tk---lV~lesp~NPtG~v~dl~~I~~la~~~~i-----~vVvD~a~a~~~~~--~-----p~~~ga 195 (425)
T PRK06084 132 -DIAALEALIDERTK---AVFCESIGNPAGNIIDIQALADAAHRHGV-----PLIVDNTVATPVLC--R-----PFEHGA 195 (425)
T ss_pred -CHHHHHHHhccCCc---EEEEeCCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCcccccC--C-----hhhcCC
Confidence 89999999987765 78888999999999999999999999999 99999999854432 1 111248
Q ss_pred cEEEEcCCCCCCCC-CCceeEEee-hhh-hhh-------h-cCCccccCCC-CC----------------cccCCCCChh
Q 011842 299 GSVSVSGHKFVGCP-MPCGVQITR-MEH-INV-------L-SSNVEYLASR-DA----------------TIMGSRNGHA 350 (476)
Q Consensus 299 Dsi~~s~hK~l~~p-~~~G~l~~~-~~~-~~~-------l-~~~~~yl~~~-~~----------------~~~~sr~~~~ 350 (476)
|+++.|++||++++ ...|.+++. ... ... + ...+.|..-. .. ...|.+ ..
T Consensus 196 Divv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~--l~ 273 (425)
T PRK06084 196 DIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAA--LS 273 (425)
T ss_pred CEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCC--CC
Confidence 99999999999854 445555553 321 011 1 0111121100 00 001111 12
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 351 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
++..|.. ..|.+.+..++++..+++..+.+.|++.+.
T Consensus 274 ~~~a~l~--lrgl~tl~~R~~~~~~na~~la~~L~~~p~ 310 (425)
T PRK06084 274 PFNAFLI--LQGLETLALRMERHTENALKVARYLQQHPQ 310 (425)
T ss_pred HHHHHHH--HcCcCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444443 346688999999999999999999999864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-15 Score=155.87 Aligned_cols=284 Identities=13% Similarity=0.047 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------C---CCcEEEecCCCchHHHHHHHHcCCe--
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------F---PDGILYASRESHYSVFKAARMYRME-- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~---p~~~Vl~s~~~H~S~~~~~~~~G~~-- 207 (476)
+....+.+.++++.+.+. .+++++||+||..|+..++.. . +..+|......|.+........+-.
T Consensus 73 ~~~~~~~~~l~~~~~~~~----~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~ 148 (400)
T PTZ00125 73 DVLGLAEKYITDLFGYDK----VLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKC 148 (400)
T ss_pred HHHHHHHHHHHhCCCCCE----EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcch
Confidence 345566677777777642 889999999999999988742 1 2334555555666655555444321
Q ss_pred ----------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 208 ----------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 208 ----------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
+..++. .|+++|++.+.. .++.+|+++...+++|.+.| +++|.++|++||+ +++
T Consensus 149 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~--~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-----lli 216 (400)
T PTZ00125 149 YNNFGPFVPGFELVDY-----NDVEALEKLLQD--PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNV-----LLI 216 (400)
T ss_pred hccCCCCCCCceEeCC-----CCHHHHHHHhCC--CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 122222 289999999962 23457777777899999887 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+|++|.++............. ...|.++++ |+++.+. ++|++++++++.+.+..... ..++.+++ ....
T Consensus 217 ~Dev~~g~g~~G~~~~~~~~~-~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~~~~~~~~-----~~t~~~~~--~~~~ 286 (400)
T PTZ00125 217 VDEIQTGLGRTGKLLAHDHEG-VKPDIVLLG--KALSGGLYPISAVLANDDVMLVIKPGEH-----GSTYGGNP--LACA 286 (400)
T ss_pred EeccccCCCccchhhHHHhcC-CCCCEEEEc--ccccCCCcCcEEEEEcHHHHhhccCCCC-----CCCCCcCH--HHHH
Confidence 999997532211000000111 125777654 9888775 99999999987766532111 11222211 1112
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC--c---HHHh-----hceee-c
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ--D---EEFV-----RRWQL-A 417 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~--~---~~~~-----~~~~l-~ 417 (476)
...++++.+..+++ .++..++.+++++.|++. +......+...++.+..+. . ..+. +++.+ +
T Consensus 287 aa~~~l~~i~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~ 363 (400)
T PTZ00125 287 VAVEALEVLKEEKL---AENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKP 363 (400)
T ss_pred HHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEee
Confidence 22233444322333 345555677777777663 3322222333333333321 1 1222 23333 3
Q ss_pred ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 418 ~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
...+.+|++.+..+|+++|+++++.|.++.+++.
T Consensus 364 ~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 364 THDNIIRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred cCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 3457899999888999999999999999887763
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-16 Score=160.53 Aligned_cols=217 Identities=13% Similarity=0.065 Sum_probs=153.6
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~g 217 (476)
+++.+.++++.|.+. .++|++|+.|+..++.+... +++.|+++...|.+ +...++..|++++.++.+
T Consensus 60 ~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~~l~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~--- 130 (418)
T TIGR01326 60 DVLEQRIAALEGGVA----ALAVASGQAAITYAILNLAQ--AGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD--- 130 (418)
T ss_pred HHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHhC--CCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC---
Confidence 456666888888753 79999999999999887765 89999999988754 345567789999999864
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+... ......
T Consensus 131 --d~~~l~~~l~~~t~---~V~le~p~NPtg~v~dl~~I~~la~~~~i-----~livD~t~~~~~~~-------~~l~~g 193 (418)
T TIGR01326 131 --DPEEFEKAIDENTK---AVFAETIGNPAINVPDIEAIAEVAHAHGV-----PLIVDNTFATPYLC-------RPIDHG 193 (418)
T ss_pred --CHHHHHHhcCcCCe---EEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCchhhcC-------CchhcC
Confidence 89999999976654 77888999999999999999999999999 99999999754321 111124
Q ss_pred ccEEEEcCCCCCCC-CCCceeEEeehhh-hhhhcCCccccCCCCC-------------------------cccCCCCChh
Q 011842 298 IGSVSVSGHKFVGC-PMPCGVQITRMEH-INVLSSNVEYLASRDA-------------------------TIMGSRNGHA 350 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~-p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~-------------------------~~~~sr~~~~ 350 (476)
+|+++.|++||++. ++++|+++++.+. ...... ...+..... ...|... .
T Consensus 194 ~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~--~ 270 (418)
T TIGR01326 194 ADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGR-FPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAAL--S 270 (418)
T ss_pred CeEEEECccccccCCccceEEEEEecccccccccc-cccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCC--C
Confidence 89999999999985 5778988886532 111000 000000000 0011111 1
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 351 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
+...|.. ..+.+.+..++++..+++..+.+.|.+.+.
T Consensus 271 p~~a~~~--~~~l~tl~~R~~~~~~~a~~la~~L~~~~~ 307 (418)
T TIGR01326 271 PFNAFLL--LQGLETLSLRMERHVENALKVAEFLEAHPK 307 (418)
T ss_pred HHHHHHH--HCCcccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344433 335567777888888889999999988753
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=156.17 Aligned_cols=227 Identities=14% Similarity=0.025 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-G 217 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g 217 (476)
.+.+++.+++++++|.+. +++|+|||.|+.+++.++. ..||++|+++.++|.++..+++..|++++.++++++ +
T Consensus 31 ~~~~~~e~~la~~~g~~~----~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~ 105 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSAK----VLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTM 105 (375)
T ss_pred HHHHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcC
Confidence 566777788888888853 8999999999887766542 238999999999999999999999999999999865 5
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.+|+++|++++.++++ +|++++ ++|...++++|.++|++||+ ++++|++|+.+.....+.. ...
T Consensus 106 ~~d~~~le~~i~~~tk---~i~~~~---~~G~~~~~~~i~~la~~~~i-----~vIeD~a~a~g~~~~~~~~-----g~~ 169 (375)
T PRK11706 106 NIDETLIEAAITPKTR---AIVPVH---YAGVACEMDTIMALAKKHNL-----FVVEDAAQGVMSTYKGRAL-----GTI 169 (375)
T ss_pred CcCHHHHHHhcCCCCe---EEEEeC---CCCCccCHHHHHHHHHHcCC-----EEEEECccccccccCCeee-----ecC
Confidence 7999999999977654 555554 57989999999999999999 9999999985542111111 011
Q ss_pred ccEEEEcCC--CCCCCCCCceeEEeehhhhhhh---cC---Ccc-ccCCC----CCcccCCCCChhHHHHHHHHHHhChh
Q 011842 298 IGSVSVSGH--KFVGCPMPCGVQITRMEHINVL---SS---NVE-YLASR----DATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 298 ~Dsi~~s~h--K~l~~p~~~G~l~~~~~~~~~l---~~---~~~-yl~~~----~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
.|.-++|+| |.+.++.|.+++..++++.+.+ .. ... +.... .....|+......+. +++.....+
T Consensus 170 ~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--aa~~~~ql~ 247 (375)
T PRK11706 170 GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQ--AAYLWAQLE 247 (375)
T ss_pred cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHH--HHHHHHHHH
Confidence 355566766 9998755544444334443322 11 000 10000 000012211111111 122111224
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcC
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g 388 (476)
.+++..++..++++++.+.|...+
T Consensus 248 ~l~~~~~~R~~~~~~~~~~L~~~~ 271 (375)
T PRK11706 248 AADRINQRRLALWQRYYDALAPLA 271 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567788888888999999998764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-15 Score=153.68 Aligned_cols=317 Identities=15% Similarity=0.110 Sum_probs=207.6
Q ss_pred CCcCCcchHHHHHHHHHhhC--CCC-CCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcC-CchhHHHHHHHHH
Q 011842 103 PYNLDFDYGALAQLQHFSIN--NLG-DPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITN-CGTEGNLHGILVG 178 (476)
Q Consensus 103 p~~~~~~~~~l~~~l~~~~n--~~g-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~-ggt~An~~al~aa 178 (476)
|.....+...+.++....+| ..| +..+.++......++.+++.+.+.++++.+. ++..++.+ |||.++-.++...
T Consensus 13 pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~-~y~v~~l~Gsgt~~~ea~~~nl 91 (365)
T PLN02452 13 AGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPD-NYEVLFLQGGASTQFAAIPLNL 91 (365)
T ss_pred CCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCC-CceEEEEeCccHHHHHHHHHhc
Confidence 33333444555555554443 222 2233444445667899999999999999864 46676665 4555555555544
Q ss_pred HhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeCCCCC---ccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc-ccC
Q 011842 179 REVFPDGILYASRESHYS--VFKAARMYRMECVKVDCLISG---EIDCADFKAKLLQNKDKPAIINVNIGTTVKGA-VDD 252 (476)
Q Consensus 179 ~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~~~~g---~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~-id~ 252 (476)
.. +++.+++-....++ +.+.++.+|...+........ -.|++++ +.++ .+.+|.+++..|.+|. +.|
T Consensus 92 ~~--~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~hnETstGv~~~~ 164 (365)
T PLN02452 92 CK--PGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELTP-DAKFVHICANETIHGVEFKD 164 (365)
T ss_pred CC--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCCC-CCcEEEECCCCCCCcEecCc
Confidence 44 66666665667766 557777788744433222222 3566654 2222 2458999999999999 588
Q ss_pred HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-C
Q 011842 253 LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-N 331 (476)
Q Consensus 253 l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~ 331 (476)
++++.+ + .++||++++.+..| +++.+ .+.+..++||.++ |.|.|++++|+++++.... .
T Consensus 165 ~~~i~~------~-----~lvVDa~Ss~g~~p-------idv~~-~~v~~~saqK~lG-P~Gl~~v~vr~~~l~~~~~~~ 224 (365)
T PLN02452 165 YPDVGN------V-----PLVADMSSNFLSKP-------VDVSK-YGVIYAGAQKNVG-PSGVTIVIIRKDLIGNARPIT 224 (365)
T ss_pred ccccCC------C-----eEEEECCccccCcc-------cCHHH-cCEEEEecccccC-CCCeEEEEEcHHHHhhcccCC
Confidence 887753 6 89999999877666 55544 2334469999997 9999999999998765432 2
Q ss_pred ccccCC----CCCcccCCCCChhHHHHHHHHHHhChh-cHHHHHHHHHHHHHHHHHHHHhc-CCeEe-ecC---CeeEEE
Q 011842 332 VEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGYK-GFQKEVQKCLRNAHYLKDRLLDA-GISAM-LNE---LSSTVV 401 (476)
Q Consensus 332 ~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~-g~~~~-~~~---~~~iv~ 401 (476)
+.|+.- ...+..+|.+....+.+..+++.+..+ |++.+.++..++++++++.|++. |+... ..+ ...+++
T Consensus 225 ~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vs 304 (365)
T PLN02452 225 PGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVP 304 (365)
T ss_pred CchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEE
Confidence 334321 112334677666667777888888665 89999999999999999999985 55222 221 235788
Q ss_pred EecCCc---HHHhh-----ceee-c---ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 402 FERPQD---EEFVR-----RWQL-A---CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 402 f~~~~~---~~~~~-----~~~l-~---~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|..++. +.|.+ ++.. + ..++ +|+++...++.++|+.|++.|++-.+
T Consensus 305 F~~~~~~~~~~f~~~~~~~g~~~~~G~r~~gg-~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 305 FTLGGSELEAEFVKEAAKAGMVQLKGHRSVGG-MRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred EEcCCchhHHHHHHHHHHCCCcccCCccccCc-eEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 887653 22222 2211 1 1133 99999999999999999999988654
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=148.67 Aligned_cols=289 Identities=15% Similarity=0.142 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch---HHHHHHHHcCC--eEEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY---SVFKAARMYRM--ECVKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~---S~~~~~~~~G~--~v~~v 211 (476)
..++|..+.+...+|||++.. -+-..+|+.||+.+..+..+ |||.|+--+..|. +.-.-..+.|. +++.+
T Consensus 70 VD~vE~laierak~LFga~~a---nVQPhSGs~AN~av~~All~--pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y 144 (413)
T COG0112 70 VDEVEELAIERAKKLFGAEYA---NVQPHSGSQANQAVYLALLQ--PGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSY 144 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCcc---ccCCCCchHHHHHHHHHHcC--CCCeEecccCCCCCcccCCCCCCccceeEEeEec
Confidence 468999999999999999853 34456999999999999887 9999997666543 33222233343 67778
Q ss_pred eCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 212 DCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 212 ~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++| +++.+|+|.+++.+.+.. |.+|++ |.+..-..-|++++.+||++.|. +|.+|.||-.+.+....+..
T Consensus 145 ~vd~et~~IDyD~~~k~a~e~k--PK~ii~--G~SaY~r~id~~~~reIad~VGA-----~L~~DmAHiaGLVA~G~~p~ 215 (413)
T COG0112 145 GVDPETGLIDYDEVEKLAKEVK--PKLIIA--GGSAYSRPIDFKRFREIADEVGA-----YLMVDMAHVAGLIAGGVHPN 215 (413)
T ss_pred ccccccCccCHHHHHHHHHHhC--CCEEEE--CccccccccCHHHHHHHHHHhCc-----eEEehHHHHHHHHhcccCCC
Confidence 888 569999999999988763 446666 76666778899999999999999 99999999654444444433
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
++. .+|+++.+.||.+.+| +.|++++++ ++.+.+.... + +..++...-+...+...+++....-+|+++
T Consensus 216 P~~---~AdvVTtTTHKTlrGP-rGG~Il~~~eel~kkin~aV-F-----Pg~qggpl~HviAakaVa~~Eal~p~fk~Y 285 (413)
T COG0112 216 PLP---HADVVTTTTHKTLRGP-RGGIILTNDEELAKKINSAV-F-----PGLQGGPLMHVIAAKAVAFKEALEPEFKEY 285 (413)
T ss_pred CCC---ccceEeCCcccCCCCC-CceEEEeccHHHHHHhhhhc-C-----CccCCChHHHHHHHHHHHHHHHcChhHHHH
Confidence 233 2899999999999965 568888886 4555443211 0 122344433444455566666667789999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecC-C---c---HHHhhceee-------cc------cCCEEEEEE-
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERP-Q---D---EEFVRRWQL-------AC------QGNIAHVVV- 427 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~-~---~---~~~~~~~~l-------~~------~~~~lRv~~- 427 (476)
.++..+||+.|.+.|.+.|+.++..- .+..+.+... . . +..+.+..+ |. ....+|+.+
T Consensus 286 a~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtp 365 (413)
T COG0112 286 AKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTP 365 (413)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccH
Confidence 99999999999999999999776532 2344444332 1 1 222333322 21 135678854
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHH
Q 011842 428 ---MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 428 ---~~~~T~edid~~~~~l~~~~~~ 449 (476)
.....++|++.+.+.|.+++..
T Consensus 366 a~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 366 AVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred HHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 4555788988888888777653
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-15 Score=158.84 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI--S 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~ 216 (476)
..-.+..+..|+.+|.+.. -++|+|+|.+|..+++++.. ||+.|++++..|-|+..++.+.|+.+++++... .
T Consensus 195 G~i~eAe~~aA~~fgAd~t---yfvvNGTS~~n~av~~a~~~--~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~ 269 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQS---YIVTNGTSTSNKIVGMYAAP--AGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNAL 269 (713)
T ss_pred hHHHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeeEEeccccccc
Confidence 4455677888999999863 67888999999999998876 999999999999999999999999999987642 2
Q ss_pred ---CccCH-----HHHHHHHHcCC--CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc--c
Q 011842 217 ---GEIDC-----ADFKAKLLQNK--DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM--P 284 (476)
Q Consensus 217 ---g~~D~-----~~Le~~l~~~~--~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~--~ 284 (476)
|.+++ +.++++|.++. ++|..+++|++ |+.|.+-++++|+++| |+ .+||+|+||++... |
T Consensus 270 Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~----~~ilvDEAhgah~~F~p 341 (713)
T PRK15399 270 GILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DV----PSIHFDSAWVPYTHFHP 341 (713)
T ss_pred CCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CC----CEEEEeccchhhhhcCc
Confidence 34565 99999998764 46778888876 7889999999999999 66 14589999987543 2
Q ss_pred ccccCCCCCCcccccEE---EEcCCCCCCCCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHH--
Q 011842 285 FVKKAPKVSFKKPIGSV---SVSGHKFVGCPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL-- 358 (476)
Q Consensus 285 ~~~~~~~~~~~~~~Dsi---~~s~hK~l~~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l-- 358 (476)
.....+.+.....+|.. +-|.||.+.+-...+++.++...- +.+......+ +.|-+ ...+.+++
T Consensus 342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~-------~STSP---sY~LmASLD~ 411 (713)
T PRK15399 342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMH-------TSTSP---SYPIVASVET 411 (713)
T ss_pred ccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHH-------cCCCc---HHHHHHHHHH
Confidence 22222222221124555 999999999999999998876421 1111110111 11111 12222222
Q ss_pred --HHhChhcHHHHHHHHHHHHHHHHHHHHhcC
Q 011842 359 --NRKGYKGFQKEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 359 --~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g 388 (476)
+.+....-++.+++..+++..|++.|.+.+
T Consensus 412 a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~ 443 (713)
T PRK15399 412 AAAMLRGNPGKRLINRSVERALHFRKEVQRLR 443 (713)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 222111236677888888888888887753
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-15 Score=153.56 Aligned_cols=285 Identities=14% Similarity=0.045 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCc----EEEecCCCchHHHHHHHHcCCeEEEE-
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDG----ILYASRESHYSVFKAARMYRMECVKV- 211 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~----~Vl~s~~~H~S~~~~~~~~G~~v~~v- 211 (476)
+.+.++.+.++++.+.+ .+++++||++||..|+++++.. .+|+ .|++.+..|..+...+..++......
T Consensus 73 ~~~~~la~~l~~~~~~~----~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 73 PEQERLAERLVENSFAD----KVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hHHHHHHHHHHhhCCCC----EEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 44556777777776543 3899999999999999998753 2333 67766666555444443333221111
Q ss_pred ---eCCCCCc----cCHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 212 ---DCLISGE----IDCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 212 ---~~~~~g~----~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
|..++.. .|+++|++.+.+++ .+|+++...+++|.+ +.+++|.++|++||+ ++++|++|.+
T Consensus 149 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~---~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----~lI~DEv~~g 220 (389)
T PRK01278 149 GFGPLVPGFDQVPFGDIEALKAAITPNT---AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGL-----LLIFDEVQCG 220 (389)
T ss_pred cCCCCCCCceEeCCCCHHHHHHhhCCCe---EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEeccccC
Confidence 1111111 48999999996543 477776556666733 479999999999999 9999999986
Q ss_pred ccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 281 LMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
+.... .... ..... ..|.++ +.|.+++++++|+++.+++..+.+.....+ .++. ..++.+++++.
T Consensus 221 ~g~~g-~~~~-~~~~~~~pdi~t--~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~-----~t~~-----~~~~~~aaa~a 286 (389)
T PRK01278 221 MGRTG-KLFA-HEWAGVTPDIMA--VAKGIGGGFPLGACLATEEAAKGMTPGTHG-----STYG-----GNPLAMAVGNA 286 (389)
T ss_pred CCcCC-ccee-ecccCCCCCEEE--EehhccCCcceEEEEEcHHHHhccCCCCCC-----CCCC-----ccHHHHHHHHH
Confidence 53221 1100 01111 156554 569998889999999998876655322111 1121 12344444433
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhc----C-CeEeecCCeeEEEEecC-CcHHHh-----hceee-cccCCEEEEEE
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDA----G-ISAMLNELSSTVVFERP-QDEEFV-----RRWQL-ACQGNIAHVVV 427 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g-~~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l-~~~~~~lRv~~ 427 (476)
.+..-.-.+..++..++.++++++|++. + +.....+...++.+..+ +..++. ++..+ +...+.+|+++
T Consensus 287 ~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~l~~~GV~~~p~~~~~lR~~p 366 (389)
T PRK01278 287 VLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRDLVQALRDEGLLTVGAGDNVVRLLP 366 (389)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecCHHHHHHHHHHCCeEEeecCCCEEEEeC
Confidence 3311111234456666677777777653 2 21112222223333332 222332 23333 34457899998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~ 449 (476)
+..+|+++|+++++.|+++.+.
T Consensus 367 ~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 367 PLIITEEEIDEALERLERAAES 388 (389)
T ss_pred CcccCHHHHHHHHHHHHHHHHh
Confidence 8788999999999999887654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-16 Score=156.27 Aligned_cols=285 Identities=11% Similarity=0.029 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccE-EEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HH-HHHHHcCC-eEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWG-YITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VF-KAARMYRM-ECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g-~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~-~~~~~~G~-~v~~ 210 (476)
...++.+++.+.+.++++.+.+ +.. +++.|||.++=.++...... +++.+++.. .++ +. +.++.+|+ ++..
T Consensus 36 ~F~~i~~e~~~~L~~l~~~~~~-~~v~~l~GsGT~a~Eaa~~nl~~~-~g~~vLv~g--~FG~r~~~eia~~~g~~~v~~ 111 (374)
T TIGR01365 36 LGKEKLAEAIKKTREMLGVPAD-YLIGIVPASDTGAVEMALWSMLGC-RGVDVLAWE--SFGKGWVTDVTKQLKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-cEEEEECCchHHHHHHHHHHcCCC-CCCeEEEEC--HHHHHHHHHHHHhcCCCCcEE
Confidence 5678999999999999998533 444 45777777777777665532 676666643 444 34 78888999 5888
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.......+|+++++. .. -|.+++..|.||...|+++|+... ++. +++||++.+.+..|
T Consensus 112 l~~~~g~~~~~~~ve~----~~----~v~~vhnETSTGv~npv~~i~~~~--~~~-----lliVDavSs~g~~~------ 170 (374)
T TIGR01365 112 LEAEYGKLPDLKKVDF----KN----DVVFTWNGTTSGVRVPNGDFIPAD--REG-----LTICDATSAAFAQD------ 170 (374)
T ss_pred EcCCCCCCCCHHHcCC----CC----CEEEecCCCchheecccccccccc--CCC-----cEEEEccchhcCCC------
Confidence 8776666789999872 11 256889999999999997766432 478 99999998766655
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc------cccCCCCC-----c-c-cCCCCChhHHHHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV------EYLASRDA-----T-I-MGSRNGHAPIFLWYT 357 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~------~yl~~~~~-----~-~-~~sr~~~~~l~~~~~ 357 (476)
+++.+ +|++.++++|.+++|.|.++++++++.++...... .|+..... . . ..++.-.+...+++.
T Consensus 171 -l~~d~-iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~ 248 (374)
T TIGR01365 171 -LDYHK-LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDW 248 (374)
T ss_pred -CChhH-CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHH
Confidence 44443 99999999999999999999999998765433211 22221000 0 0 112222223333333
Q ss_pred ---HHHhChh-cHHHHHHHHHHHHHHHHHHHHhcCCeEeec--C--Cee-EEEEecCC--------------cHHHh---
Q 011842 358 ---LNRKGYK-GFQKEVQKCLRNAHYLKDRLLDAGISAMLN--E--LSS-TVVFERPQ--------------DEEFV--- 411 (476)
Q Consensus 358 ---l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~--~--~~~-iv~f~~~~--------------~~~~~--- 411 (476)
++.+..+ |++++.+|..++++.+++.+++.|+..+.. + .++ ++++..+. ..++.
T Consensus 249 ~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (374)
T TIGR01365 249 LDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTL 328 (374)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHH
Confidence 4433354 899999999999999999999999433332 2 233 23344321 12222
Q ss_pred --hceeec-----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 412 --RRWQLA-----CQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 412 --~~~~l~-----~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++.+. ..+..+||..++.++.+||+.+++.|.=+.
T Consensus 329 ~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 329 EKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred HHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence 122232 224789999999999999999999986543
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=162.42 Aligned_cols=225 Identities=12% Similarity=0.083 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC--
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-- 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-- 216 (476)
..-.+..+..|+++|.+.. -++|+|+|.+|..++.++.. ||+.|++++..|-|+..++.+.|+.+++++...+
T Consensus 195 G~i~eAe~~AA~~fgAd~t---yfvvNGTS~~n~av~~a~~~--~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~ 269 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRS---YMVTNGTSTANKIVGMYSAP--AGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAY 269 (714)
T ss_pred hHHHHHHHHHHHHhCCCcE---EEEeCchHHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHcCCeEEEeccccccc
Confidence 4456777889999999863 67788889999999888876 9999999999999999999999999999876522
Q ss_pred ---CccC-----HHHHHHHHHcCC--CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc--c
Q 011842 217 ---GEID-----CADFKAKLLQNK--DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM--P 284 (476)
Q Consensus 217 ---g~~D-----~~~Le~~l~~~~--~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~--~ 284 (476)
|.++ .+.++++|.++. ++|+.+++|++ |+.|.+.++++|+++|+.++ ||+|+||++... |
T Consensus 270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~-------ilvDEAwgah~~F~p 341 (714)
T PRK15400 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS-------IHFDSAWVPYTNFSP 341 (714)
T ss_pred CCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC-------EEEEccchhhhccCc
Confidence 3455 899999998764 46778888776 78899999999999997664 589999987543 2
Q ss_pred ccccCCCCCCcccc---c--EEEEcCCCCCCCCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 285 FVKKAPKVSFKKPI---G--SVSVSGHKFVGCPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 285 ~~~~~~~~~~~~~~---D--si~~s~hK~l~~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
..+..+.+. .++ | +++-|.||.+.+-...+++.++...- +.+......+ +.|-+ ...+.+++
T Consensus 342 ~~~~~sam~--~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~m~-------~STSP---sY~l~ASL 409 (714)
T PRK15400 342 IYEGKCGMS--GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMH-------TTTSP---HYGIVAST 409 (714)
T ss_pred ccCCcChhh--cCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHHHH-------cCCCc---HHHHHHHH
Confidence 222111121 223 4 89999999999888888887755310 1111100111 11111 12222222
Q ss_pred ----HHhChhcHHHHHHHHHHHHHHHHHHHHhcC
Q 011842 359 ----NRKGYKGFQKEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 359 ----~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g 388 (476)
+.+....-++.+++..+++..|++.|.+.+
T Consensus 410 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~ 443 (714)
T PRK15400 410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLR 443 (714)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 222111236678888888888998887754
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-15 Score=152.50 Aligned_cols=279 Identities=14% Similarity=0.093 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcCC----------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRM---------- 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G~---------- 206 (476)
.+++.++.+++++..+.+ ..+++++|++||..|+..++....++ +|......|.+........+.
T Consensus 70 ~~~~~~la~~l~~~~~~~----~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~ 145 (377)
T PRK02936 70 NSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPL 145 (377)
T ss_pred CHHHHHHHHHHHhcCCCC----EEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCC
Confidence 478888888888876643 38999999999999999887542334 444545566665555544432
Q ss_pred --eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 207 --ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD----DLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 207 --~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id----~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
++..+|.+ |+++|++.+.+++ .+|++....++.|.+. .+++|.++|++||+ ++++|++|.+
T Consensus 146 ~~~~~~~~~~-----d~~~l~~~~~~~~---~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~-----~lI~DEv~~g 212 (377)
T PRK02936 146 LPGFTHVPFN-----DIKALKEVMNEEV---AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGA-----LLIIDEVQTG 212 (377)
T ss_pred CCCceEeCCC-----CHHHHHHhccCCe---EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEeccccC
Confidence 12233333 7899999886543 4677766677666653 39999999999999 9999999976
Q ss_pred ccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 281 LMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
+.... ............|.++ +.|.+++++++|+++.++++.+.+.... + ..++. ..++.+.+++..
T Consensus 213 ~g~~g-~~~~~~~~~~~~di~t--~sK~l~~G~~ig~v~~~~~~~~~~~~~~-~----~~t~~-----~~~~~~aaa~a~ 279 (377)
T PRK02936 213 IGRTG-TLFAYEQFGLDPDIVT--VAKGLGNGIPVGAMIGKKELGTAFGPGS-H----GSTFG-----GNPLAMAAAKEV 279 (377)
T ss_pred CCcCc-hhhHHHhhCCCCcEEE--EcccccCCCccEEEEEcHHHHhhccCCC-C----CCCCC-----CCHHHHHHHHHH
Confidence 43221 1110000111246554 5799998889999999887766553211 1 01111 123444444444
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCc-HHHh-----hceee-cccCCEEEEEEcC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQD-EEFV-----RRWQL-ACQGNIAHVVVMP 429 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~-~~~~-----~~~~l-~~~~~~lRv~~~~ 429 (476)
+..-..++.+++..++.+++++.|++. +......+...++.+..+++ ..+. ++..+ +...+.+|++++.
T Consensus 280 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~~g~~~lRi~p~~ 359 (377)
T PRK02936 280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVLSAGPNVIRLLPPL 359 (377)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecchHHHHHHHHHHCCeEEecCCCCEEEEECCc
Confidence 422112355677777888888888763 22111223344555555432 2222 22223 3344789999888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIEN 446 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~ 446 (476)
.+|+++|+++++.|+++
T Consensus 360 ~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 360 VVTKEELDQAVYLLKKV 376 (377)
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 89999999999999764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-15 Score=150.47 Aligned_cols=267 Identities=10% Similarity=-0.062 Sum_probs=177.5
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
.++++++++.+|++. +.++++|+|+++++.... .+.. +++ |++..++|..+...++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~-~~~I~i~~Gs~e~i~~l~-~~~~--~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~------ 124 (339)
T PRK06959 56 DGLAACAARYYGAPD-AAHVLPVAGSQAAIRALP-ALLP--RGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA------ 124 (339)
T ss_pred HHHHHHHHHHhCCCC-cccEEECcCHHHHHHHHH-HhcC--CCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc------
Confidence 467778899999973 235999999999986443 3332 666 77789999999999999999999888753
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHH---HHHhCCCCCceEEEEecCcccccccccccCCCCCCc--c
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQT---LEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK--K 296 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~i---a~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~--~ 296 (476)
+.+ .+..+ ++++++|+|+||.+-+.+++.++ |++++. ++++|++|..+... .+..... .
T Consensus 125 ~~~----~~~~~---~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~-----~vI~DEay~~~~~~----~s~~~~~~~~ 188 (339)
T PRK06959 125 DTL----PAALT---HLIVVNPNNPTAERLPAARLLRWHAQLAARGG-----TLIVDEAFADTLPA----ASLAAHTDRP 188 (339)
T ss_pred hhc----cccCC---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEECCCccCCCc----ccchhccCCC
Confidence 222 22223 67788899999999776665554 567888 99999999865321 1111111 2
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEVQKCL 374 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~~~~~ 374 (476)
+ -++..|+.|.++ +++++|++++++++++.+....... .. ..+.+.++...+.... .++..++..
T Consensus 189 ~-vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~-------~v-----s~~~q~a~~~~L~~~~~~~~~~~~~~ 255 (339)
T PRK06959 189 G-LVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGAW-------TV-----SGPARHAVRAAFADAAWQAAMRERLA 255 (339)
T ss_pred C-EEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCCC-------CC-----cHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2 256678899886 8899999999988776664321110 11 1244555555543322 455667778
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeec--ccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLA--CQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~--~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+.++++.+.|++.|+... +..+.+.+..++..++. +++.+. ...+++|+++. .|.+++++|+++|+++.
T Consensus 256 ~~r~~l~~~L~~~g~~~~--~~~~f~~~~~~~~~~l~~~l~~~GI~vr~~~~~~~lRisi~--~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 256 ADGARLAALLRAHGFAVH--ATPLFSWTDDPRAAALHAALARRGIWTRYFAPPPSVRFGLP--ADEAEWQRLEDALAECV 331 (339)
T ss_pred HHHHHHHHHHHHCCCCcc--CcceEEEEeCCCHHHHHHHHHhCCeEEEECCCCCeEEEECC--CCHHHHHHHHHHHHHHH
Confidence 889999999999876433 23344455554433332 233332 12357888863 47789999999999988
Q ss_pred HHHHh
Q 011842 448 STWYE 452 (476)
Q Consensus 448 ~~~~~ 452 (476)
+.+..
T Consensus 332 ~~~~~ 336 (339)
T PRK06959 332 PTLAA 336 (339)
T ss_pred HHHhh
Confidence 77653
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=156.91 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g~ 218 (476)
.+.+.++++.|.+. .++++||+.|+..++.+... +|+.|+++.+.|..+... ++.+|++++.++. .
T Consensus 87 ~Le~~lA~leg~~~----~iv~~sG~~Ai~~~l~al~~--~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~----~ 156 (427)
T PRK07049 87 IVEDRLAVYEGAES----AALFSSGMSAIATTLLAFVR--PGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD----G 156 (427)
T ss_pred HHHHHHHHHhCCCc----EEEEccHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC----C
Confidence 34455777777552 88999999998888888776 999999999999877554 3557888777762 2
Q ss_pred cCHHHHHHHHHcC--CCCcEEEEEeeCCCccccccCHHHHHHHHHH------hCCCCCceEEEEecCcccccccccccCC
Q 011842 219 IDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDDLDLVIQTLEE------SGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 219 ~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~------~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.|+++|++.|.+. ..++.+|.+.+++|++|.+-|+++|.+++++ +++ ++++|++|...... .+
T Consensus 157 ~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~-----~vvvDety~~~~~~----~p 227 (427)
T PRK07049 157 LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRP-----IIACDNTLLGPVFQ----KP 227 (427)
T ss_pred CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCC-----EEEEECCccccccC----Cc
Confidence 4788888887532 1234588888999999999999999999998 788 99999998654321 11
Q ss_pred CCCCcccccEEEEcCCCCCC--CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG--CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~--~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
+ ...+|++..|+.|+++ ..+++|+++.++++.+.+.....++ ++ ...++.+|++++.+ +.+..
T Consensus 228 -l--~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~--------g~--~ls~~~a~l~~r~L--~tl~~ 292 (427)
T PRK07049 228 -L--EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI--------GT--QLDPHSCWMLGRSL--ETLVL 292 (427)
T ss_pred -c--ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc--------CC--CCCHHHHHHHHcCC--ChHHH
Confidence 1 1237899999999998 4678999998877666553221111 11 13356777766654 56788
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 011842 369 EVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g 388 (476)
++++..++++.+.+.|++.+
T Consensus 293 R~~~~~~~a~~la~~L~~~p 312 (427)
T PRK07049 293 RMERANRNARAVAEFLRDHP 312 (427)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 88888999999999999975
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-15 Score=152.33 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-----cEEEecCCCchHH-HHHHHHcCCeEE--
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-----GILYASRESHYSV-FKAARMYRMECV-- 209 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-----~~Vl~s~~~H~S~-~~~~~~~G~~v~-- 209 (476)
.+++.++.++++++.|.+ ..++|+||++|+..++.+++..... +.|++...++..+ ..+....+....
T Consensus 80 ~~~~~~la~~l~~~~~~~----~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 155 (396)
T PRK02627 80 IEPQEELAEKLVELSGMD----KVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQE 155 (396)
T ss_pred CHHHHHHHHHHHhhcCCC----EEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccc
Confidence 377788889999987764 3999999999999999988763221 5566665554333 233222222211
Q ss_pred -EEeCCCCC----ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 210 -KVDCLISG----EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 210 -~v~~~~~g----~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
..+...+. .-|+++|++++.++ +.+|+++...+++|.. +.+++|.++|++||+ ++++|++|++
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~lI~DE~~~g 227 (396)
T PRK02627 156 GFEPLVEGFIYVPFNDIEALKAAITDK---TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGI-----LLILDEVQTG 227 (396)
T ss_pred cCCCCCCCceEeCCCCHHHHHHhcCCC---eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEechhcC
Confidence 11111110 11899999998543 3477776667777732 348999999999999 9999999986
Q ss_pred ccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 281 LMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
+.... ...+ +.... ..|.++ +.|.++.++++|++++++++.+.+.... + ..++.. .++.+.++++
T Consensus 228 ~g~~g-~~~~-~~~~~~~pdi~t--~sK~~~~G~rig~~~~~~~~~~~~~~~~-~----~~t~~~-----~~~~~~aa~~ 293 (396)
T PRK02627 228 MGRTG-KLFA-YQHYGIEPDIMT--LAKGLGGGVPIGAVLAKEKVADVFTPGD-H----GSTFGG-----NPLACAAALA 293 (396)
T ss_pred CCccC-ceee-ehhcCCCCCEEE--EcchhhCCcccEEEEEcHHHHhccCCCC-C----CCCCCC-----CHHHHHHHHH
Confidence 53321 1110 11111 256655 4598888899999999988766553211 1 011211 2344444433
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecC-CcHHHh-----hceeec-ccCCEEEEEEc
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERP-QDEEFV-----RRWQLA-CQGNIAHVVVM 428 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l~-~~~~~lRv~~~ 428 (476)
.+..-..++..++..++.+++++.|++. +..........++.+..+ ....+. ++..+. ...+.+|++++
T Consensus 294 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~~ 373 (396)
T PRK02627 294 VIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVKKALEKGLLINVTGDNVLRLLPP 373 (396)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecCcHHHHHHHHHHCCeEEeecCCCEEEEECC
Confidence 3311111345566666777777776653 222222233344555443 222222 233343 33477999888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+|+++|+++++.|+++.+++
T Consensus 374 ~~~~~~~i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 374 LIISKEEIDEAVDRLEEVLKEL 395 (396)
T ss_pred cccCHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999887653
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-15 Score=151.98 Aligned_cols=280 Identities=12% Similarity=0.063 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-------CCcEEEecCCCchHHHHHHHHcC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-------PDGILYASRESHYSVFKAARMYR------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-------p~~~Vl~s~~~H~S~~~~~~~~G------ 205 (476)
+...++.+.++++.+.+ ..+++++|++||..|+..+|... ++.+|......|.+...+..+.|
T Consensus 82 ~~~~~l~~~l~~~~~~~----~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 157 (403)
T PRK05093 82 EPALRLAKKLIDATFAE----RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSD 157 (403)
T ss_pred HHHHHHHHHHHhhCCCC----EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhh
Confidence 33457777788877653 38999999999999999987642 34456666667776554433221
Q ss_pred ------CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcc-ccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 206 ------MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVK-GAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 206 ------~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~t-G~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
.+++.+|.+ |++++++.+.+++ .+|+++ |.+++ |.+.+ +++|.++|++||+ ++++
T Consensus 158 ~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~---aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~-----~lI~ 223 (403)
T PRK05093 158 GFGPKPADITHVPFN-----DLAAVKAVIDDHT---CAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNA-----LLIF 223 (403)
T ss_pred cCCCCCCCcEEeCCC-----CHHHHHHHhcCCe---EEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 124445444 8899999886443 466666 54444 44433 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++... .+..+ ..... ..|.++ +.|.+++++++|+++.++++.+.+.... + ..++.+ .++.
T Consensus 224 DEv~~g~g~~-g~~~~-~~~~~~~pdi~s--~sK~l~~G~rig~vv~~~~i~~~l~~~~-~----~~t~~~-----~~~~ 289 (403)
T PRK05093 224 DEVQTGMGRT-GDLFA-YMHYGVTPDILT--SAKALGGGFPIGAMLTTAEIASHFKVGT-H----GSTYGG-----NPLA 289 (403)
T ss_pred echhhCCCCC-ccchh-hhhcCCCCCEEE--ecccccCCcceEEEEEcHHHHhhcCCCC-C----CCCCCC-----CHHH
Confidence 9999864332 21111 11111 256554 4699988899999999988766653211 0 112211 2334
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC--eEe--ecCCeeEEEEecCC-----cHHHh-----hceeecc-
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI--SAM--LNELSSTVVFERPQ-----DEEFV-----RRWQLAC- 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~--~~~--~~~~~~iv~f~~~~-----~~~~~-----~~~~l~~- 418 (476)
++++++.+....-.+..++..++.++|.+.|++.+. ... .+....++.+..++ ..++. ++..+..
T Consensus 290 ~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~ 369 (403)
T PRK05093 290 CAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA 369 (403)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecC
Confidence 444443221111134567788888999999988632 111 11223333333321 12232 2223333
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|++++..+|+++|+.+++.|.++.+.+
T Consensus 370 g~~~lRl~~~~~~~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 370 GPDVLRFAPSLVIEEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34789999898899999999999999887643
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-15 Score=157.81 Aligned_cols=174 Identities=15% Similarity=0.144 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH-HHHcCCeEEEEeCCC--
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA-ARMYRMECVKVDCLI-- 215 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~-~~~~G~~v~~v~~~~-- 215 (476)
..-.+..+..|+++|.+.. -++|+|+|.+|..++.++.. ||+.|++++..|-|+..+ ..+.|+.+++++...
T Consensus 174 G~i~eAq~~AA~~fgAd~t---yFlvNGTS~gn~a~i~a~~~--~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~ 248 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKT---YFVLNGTSASNKVVTNALLT--PGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNP 248 (720)
T ss_pred hHHHHHHHHHHHHhCCCce---EEEeCChhHHHHHHHHHhcC--CCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccc
Confidence 4456777889999999864 67889999999999998886 999999999999999995 889999999987643
Q ss_pred C---CccCH-----HHHHHHHHcC-CC-----Cc-EEEEEeeCCCccccccCHHHHHHH-HHHhCCCCCceEEEEecCcc
Q 011842 216 S---GEIDC-----ADFKAKLLQN-KD-----KP-AIINVNIGTTVKGAVDDLDLVIQT-LEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 216 ~---g~~D~-----~~Le~~l~~~-~~-----~p-~~vv~t~gtt~tG~id~l~~I~~i-a~~~g~~~~~~~lhvD~a~~ 279 (476)
. |.++. +.++++|.++ .. +| .++++|++ |+.|.+.++++|+++ ++.++ +||+|+|||
T Consensus 249 ~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~------~llvDEAhg 321 (720)
T PRK13578 249 FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD------YILFDSAWV 321 (720)
T ss_pred cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC------cEEEeCcch
Confidence 2 34565 4499999876 22 45 56777655 588999999999999 56666 699999998
Q ss_pred cccccc--cccCCCCCCccccc----EEEEcCCCCCCCCCCceeEEeehhh
Q 011842 280 GLMMPF--VKKAPKVSFKKPIG----SVSVSGHKFVGCPMPCGVQITRMEH 324 (476)
Q Consensus 280 g~~~~~--~~~~~~~~~~~~~D----si~~s~hK~l~~p~~~G~l~~~~~~ 324 (476)
+..... .+..+......++| +++-|.||.+.+-...+++.+++.+
T Consensus 322 ah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~ 372 (720)
T PRK13578 322 GYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH 372 (720)
T ss_pred hhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc
Confidence 764321 11222222334578 9999999999998889999887654
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=148.32 Aligned_cols=286 Identities=11% Similarity=0.057 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEe-cCCCchHHHHHHHHcCCe----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYA-SRESHYSVFKAARMYRME---- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~-s~~~H~S~~~~~~~~G~~---- 207 (476)
+...++.+.++++.+.+ ..+++++|++||..|+.++|... ++..|+. ...-|.+...+..+.+..
T Consensus 81 ~~~~~la~~l~~~~~~~----~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 81 EPVLRLAKKLIDATFAD----RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred HHHHHHHHHHHhhCCCC----eEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 44456677777777653 38999999999999999998642 3344544 444555544444433321
Q ss_pred --------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc-----ccCHHHHHHHHHHhCCCCCceEEEE
Q 011842 208 --------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGA-----VDDLDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 208 --------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~-----id~l~~I~~ia~~~g~~~~~~~lhv 274 (476)
+..+|.+ |+++|++.+.++ ..+|+++ |...+|. .+.+++|.++|++||+ ++++
T Consensus 157 ~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~-----llI~ 222 (406)
T PRK12381 157 DFAPLPPDIRHAAYN-----DLNSASALIDDQ---TCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNA-----LLIF 222 (406)
T ss_pred CCCCCCCCeeEeCCC-----CHHHHHHhccCC---eeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 2333333 789999988643 3466664 5444443 3569999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
|++|.|+... ......-...-..|.+ ++.|.++.++++|+++.++++.+.+.... + ..++.++. ......
T Consensus 223 DEv~tG~gr~-G~~~~~~~~~v~pDi~--t~sK~l~gG~~ig~~~~~~~~~~~~~~~~-~----~~t~~~~p--l~~aaa 292 (406)
T PRK12381 223 DEVQTGVGRT-GELYAYMHYGVTPDVL--TTAKALGGGFPIGAMLTTEKCASVMTVGT-H----GTTYGGNP--LASAVA 292 (406)
T ss_pred cchhhCCCCC-cchhhhHhhCCCCCEE--EehhhhhCCCceEEEEEcHHHHhhcCCCC-C----CCCCCCCH--HHHHHH
Confidence 9999665322 1111000011125765 45599988899999999988876653211 1 11222221 222223
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC--CeEee--cCCeeEEEEecCCc-----HHH-----hhceeec-cc
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--ISAML--NELSSTVVFERPQD-----EEF-----VRRWQLA-CQ 419 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~~~--~~~~~iv~f~~~~~-----~~~-----~~~~~l~-~~ 419 (476)
.++++.+. -++.+++..++.++|.+.|++.+ ...+. .....++.+..+++ ..+ .+++.+. ..
T Consensus 293 ~a~l~~l~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g 369 (406)
T PRK12381 293 GKVLELIN---TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIAG 369 (406)
T ss_pred HHHHHHHh---hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeCC
Confidence 33343432 23567888888999999988763 21111 11123333333221 122 1233333 23
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGK 455 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~ 455 (476)
.+.+|++++..+|+++||++++.|+++.+++.++|.
T Consensus 370 ~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~~~~ 405 (406)
T PRK12381 370 PNVVRFAPALNISEEEITTGLDRFARACERFVSRGS 405 (406)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 468999998889999999999999999988877663
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-16 Score=155.26 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhhCCCcEEEecCCC---chHHHHHHHH-------
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRES---HYSVFKAARM------- 203 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~~p~~~Vl~s~~~---H~S~~~~~~~------- 203 (476)
...++|+.+.+.+.++||++++ .|.+- ..+|+.||+.++.+..+ |||.|+.-+.. |.|.-.....
T Consensus 63 ~id~iE~la~~ra~~lF~~~~~-~w~anvqp~SGs~An~av~~aLl~--pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~ 139 (399)
T PF00464_consen 63 YIDEIEELAIERAKELFGAEPK-EWYANVQPHSGSQANLAVYMALLK--PGDTIMGLSLPHGGHLSHGSSVNFKKISASG 139 (399)
T ss_dssp HHHHHHHHHHHHHHHHHT-STT-TEEEE---SSHHHHHHHHHHHHT---TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCcc-cceEEeecCCchHHHHHHHHHHHh--hcCcEEecChhhccccccccccccccccccc
Confidence 3568999999999999999853 44443 46999999999998887 99998866654 4443222222
Q ss_pred cCCeEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 204 YRMECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 204 ~G~~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
...+++.++++ +++.+|++.+++.+.+. +|.+|++ |.+..-...|++++.+||++.|. +|++|.+|-.+.
T Consensus 140 ~~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~--G~S~y~~~~d~~~~reIad~vga-----~l~~D~sH~~GL 210 (399)
T PF00464_consen 140 LYFESVPYPVDPDTGLIDYDELEKLAKEH--KPKLIIC--GASSYPRPIDFKRFREIADEVGA-----YLMADISHIAGL 210 (399)
T ss_dssp HHSEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEE--E-SSTSS---HHHHHHHHHHTT------EEEEE-TTTHHH
T ss_pred ceEEEEeeeeecCCCeECHHHHHHHHhhc--CCCEEEE--CchhccCccCHHHHHHHHHhcCc-----EEEecccccccc
Confidence 23578888988 57999999999999865 3447776 43344456789999999999999 999999996554
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEee--------------hhhhhhhcCCccccCCCCCcccCCCCC
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITR--------------MEHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~--------------~~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
+.......++. .+|+++++.||.+.+| +.|+++++ .++.+.+... ++ +...++...
T Consensus 211 Ia~g~~~~P~~---~ADvvt~sThKtl~GP-rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~a---vf---P~~qg~~h~ 280 (399)
T PF00464_consen 211 IAGGLFPNPFP---YADVVTGSTHKTLRGP-RGGIILTNKGSKNVDKKGKEIDEELAEKIDSA---VF---PGLQGGPHM 280 (399)
T ss_dssp HHTTSS--GCC---TSSEEEEESSGGG-SS-S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHH---HT---TTT-SS--H
T ss_pred eehheecCccc---cceEEEeecccccccc-CceEEEEcCCccccCCcccccHHHHHHHhccc---cC---CCcccCcch
Confidence 43333333343 3899999999999965 56999988 2333332110 00 122333333
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC---c-HH---Hhhcee-----
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ---D-EE---FVRRWQ----- 415 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~---~-~~---~~~~~~----- 415 (476)
....++..+++......++++.++..+||+.|.+.|.+.|+.++.. ..+..|.+.... + .+ ..++..
T Consensus 281 ~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnk 360 (399)
T PF00464_consen 281 HRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNK 360 (399)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EE
T ss_pred hHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecc
Confidence 4455666677766566789999999999999999999999987653 235666666421 1 11 222211
Q ss_pred --eccc-----CCEEEEEEc----CCCCHHHHHHHHHHH
Q 011842 416 --LACQ-----GNIAHVVVM----PNVTIDKLDDFLNEL 443 (476)
Q Consensus 416 --l~~~-----~~~lRv~~~----~~~T~edid~~~~~l 443 (476)
+|.. ...+|+.+. ....++|+..+.+.|
T Consensus 361 n~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 361 NTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp E--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred cccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 2322 357999864 455788888776543
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=150.13 Aligned_cols=281 Identities=15% Similarity=0.141 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH------HHHHHHHcCCeEEEEeCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS------VFKAARMYRMECVKVDCL 214 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S------~~~~~~~~G~~v~~v~~~ 214 (476)
...+.+.+++++|.+. .+++++|+.|++.++.+. .++++|++++..|++ +...++..|++++.++++
T Consensus 129 ~~~~e~~lA~l~Gae~----a~vv~sgtaAl~l~l~~l---~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~ 201 (464)
T PRK04311 129 DRALAALLCALTGAED----ALVVNNNAAAVLLALNAL---AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT 201 (464)
T ss_pred HHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHh---CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC
Confidence 3467788999999863 788999999998877543 388999999887763 334567789999999764
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCc--cc--cccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc----
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTV--KG--AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV---- 286 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~--tG--~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~---- 286 (476)
+..++++++++|.++|+ +|++.+.+++ +| ...|+++|+++|++||+ ++++|++.|.. .+..
T Consensus 202 --~~t~~~dle~aI~~~Tk---lV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi-----~vivD~gsG~l-~~~~~~gl 270 (464)
T PRK04311 202 --NRTHLRDYEQAINENTA---LLLKVHTSNYRIEGFTKEVSLAELAALGKEHGL-----PVVYDLGSGSL-VDLSQYGL 270 (464)
T ss_pred --CCCCHHHHHHhcCccCe---EEEEEcCCCccccccCCcCCHHHHHHHHHHcCC-----eEEEECCCccc-ccchhccC
Confidence 34689999999988775 7777777775 45 56799999999999999 99999975432 1111
Q ss_pred ccCCC-CCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh---
Q 011842 287 KKAPK-VSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--- 361 (476)
Q Consensus 287 ~~~~~-~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--- 361 (476)
.+.+. .+.. .++|++++|+|||+++| .+|++++++++++.+.... .. ..+.... ....++.+.+..+
T Consensus 271 ~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~li~~l~~~~-~~----r~lr~dk--~~l~~l~~~l~~~~~~ 342 (464)
T PRK04311 271 PDEPTVQELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIARLKKHP-LK----RALRVDK--LTLAALEATLRLYLDP 342 (464)
T ss_pred CCCCchhhHHhcCCcEEEecCcccccCC-ceEEEEEcHHHHHHHhhch-hH----HHHhcch--HHHHHHHHHHHHHhCh
Confidence 01111 1111 35999999999999987 5899999988776553211 10 0001111 1111122222211
Q ss_pred -----Ch---hcHHHHHHHHHHHHHHHHHHHHhcC---Ce-EeecC----------C----eeEEEEecC--CcHHHhhc
Q 011842 362 -----GY---KGFQKEVQKCLRNAHYLKDRLLDAG---IS-AMLNE----------L----SSTVVFERP--QDEEFVRR 413 (476)
Q Consensus 362 -----g~---~g~~~~~~~~~~~a~~l~~~L~~~g---~~-~~~~~----------~----~~iv~f~~~--~~~~~~~~ 413 (476)
+. .-+....++..++|+.+.+.|+... +. .+.+. . +..|.+... ....+.+.
T Consensus 343 ~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~ 422 (464)
T PRK04311 343 EKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAAR 422 (464)
T ss_pred hhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHH
Confidence 11 1233445777778888888888753 21 12211 1 223333322 12334343
Q ss_pred eeecccCCEE-----EEEEcC-CCCHHHHHHHHHHHHHHH
Q 011842 414 WQLACQGNIA-----HVVVMP-NVTIDKLDDFLNELIENR 447 (476)
Q Consensus 414 ~~l~~~~~~l-----Rv~~~~-~~T~edid~~~~~l~~~~ 447 (476)
+.-..-.-.. ++.+.+ ...++|++.+++.|+++.
T Consensus 423 lr~~~~~i~~r~~~~~~~ld~r~~~~~~~~~~~~~~~~~~ 462 (464)
T PRK04311 423 LRLLPPPVIGRIEDGRLLLDLRTLEEEDEERLAAALLEAL 462 (464)
T ss_pred HhcCCCCEEEEEECCEEEEEeCcCCHHHHHHHHHHHHHHh
Confidence 3321111111 233333 348899999999998875
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-15 Score=151.58 Aligned_cols=219 Identities=13% Similarity=0.077 Sum_probs=152.3
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~g 217 (476)
+++.+.++++.|... ++.|++|+.|+.+++.++.. +||+|+++...|.+.... +..+|+++..+..
T Consensus 64 ~~lE~~la~leg~~~----av~~~SG~aAi~~al~all~--~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~---- 133 (432)
T PRK06702 64 AAFEQKLAELEGGVG----AVATASGQAAIMLAVLNICS--SGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP---- 133 (432)
T ss_pred HHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC----
Confidence 344455777788764 78999999999999987754 999999999998754443 6778999988854
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.+|++.|+++|.++|+ +|++++++++++.+.|+++|+++|++||+ ++++|.+++..... + ....+
T Consensus 134 ~~d~~~l~~~I~~~Tk---~I~~e~pgnP~~~v~Di~~I~~iA~~~gi-----~livD~T~~tP~~~---~----pl~~G 198 (432)
T PRK06702 134 NLTADEIVALANDKTK---LVYAESLGNPAMNVLNFKEFSDAAKELEV-----PFIVDNTLATPYLC---Q----AFEHG 198 (432)
T ss_pred CCCHHHHHHhCCcCCe---EEEEEcCCCccccccCHHHHHHHHHHcCC-----EEEEECCCCchhhC---C----hhhcC
Confidence 4699999999988876 77788899999999999999999999999 99999998633221 1 11124
Q ss_pred ccEEEEcCCCCCCCCCC-ceeEEe-ehh--hhh----hhc-CCcc-----ccCC---------C---CCcccCCCCChhH
Q 011842 298 IGSVSVSGHKFVGCPMP-CGVQIT-RME--HIN----VLS-SNVE-----YLAS---------R---DATIMGSRNGHAP 351 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~-~G~l~~-~~~--~~~----~l~-~~~~-----yl~~---------~---~~~~~~sr~~~~~ 351 (476)
+|+++-|..||+++... .|.+++ ... +.. .+. .... |... . .....|+. ..+
T Consensus 199 ADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~sp 276 (432)
T PRK06702 199 ANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNC--MSP 276 (432)
T ss_pred CCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCC--CCH
Confidence 99999999999975322 222232 221 100 000 0000 0000 0 00001222 235
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
+..|..++ |.+.+..++++..+++..+.+.|++.+.
T Consensus 277 ~~a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~ 312 (432)
T PRK06702 277 FNAYISNI--GLETLHLRMERHSENALAVAKWLADHER 312 (432)
T ss_pred HHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56665554 4577899999999999999999999874
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-15 Score=145.45 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCAD 223 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~ 223 (476)
+++++++.+|. ++++|+|+++++...+... . +++.|+++.++|+.+...++.+|++++.++ +|++.
T Consensus 45 l~~~ia~~~~~-----~I~vt~G~~~al~~~~~~~-~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~ 110 (311)
T PRK08354 45 LEEEFSKLFGE-----PIVITAGITEALYLIGILA-L--RDRKVIIPRHTYGEYERVARFFAARIIKGP------NDPEK 110 (311)
T ss_pred HHHHHHHHHCC-----CEEECCCHHHHHHHHHHhh-C--CCCeEEEeCCCcHHHHHHHHHcCCEEeecC------CCHHH
Confidence 34567777773 2899999999987665432 2 899999999999999999999999997764 47889
Q ss_pred HHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 224 FKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 224 Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
|++.+.+ ++ ++++++|+|+||.+.+ +++|+++|++||+ |+++|++|+.+.... .. .+ .+ -.+
T Consensus 111 l~~~~~~-~~---~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~-----~li~De~y~~f~~~~-~~---~~-~~-~vi 175 (311)
T PRK08354 111 LEELVER-NS---VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNA-----LLILDEAFIDFVKKP-ES---PE-GE-NII 175 (311)
T ss_pred HHHhhcC-CC---EEEEecCCCCCCCccCHHHHHHHHHHhhhcCc-----EEEEeCcchhccccc-cc---cC-CC-cEE
Confidence 9888752 33 6777889999999865 6777788889999 999999998765431 11 11 11 235
Q ss_pred EEEcCCCCCC-CCCCceeEEe
Q 011842 301 VSVSGHKFVG-CPMPCGVQIT 320 (476)
Q Consensus 301 i~~s~hK~l~-~p~~~G~l~~ 320 (476)
++.|+.|.++ .++++|++++
T Consensus 176 ~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 176 KLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred EEeccHhhcCCccceeeeeee
Confidence 6678889886 8899999998
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=149.56 Aligned_cols=225 Identities=13% Similarity=0.041 Sum_probs=151.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-------hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-------EVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-------~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
++++.+++++|.+. .++|+|||+|+..++.++. ...||+.|+++.++|.+...++...|++++.++++
T Consensus 67 ~fe~~lA~~~g~~~----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~ 142 (438)
T PRK15407 67 AFEKKLAEFLGVRY----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL 142 (438)
T ss_pred HHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC
Confidence 34445667777753 8899999999999988763 23589999999999999999999999999999987
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.++.+|++.|++++.++++ +|++++. .|...++++|.++|++||+ ++++|++|+.+.....+... .
T Consensus 143 ~~~~id~~~le~~i~~~tk---aVi~~~~---~G~p~dl~~I~~la~~~gi-----~vIeDaa~a~G~~~~g~~~G--~- 208 (438)
T PRK15407 143 PTYNIDASLLEAAVSPKTK---AIMIAHT---LGNPFDLAAVKAFCDKHNL-----WLIEDNCDALGSTYDGRMTG--T- 208 (438)
T ss_pred CcCCcCHHHHHHHcCcCCe---EEEEeCC---CCChhhHHHHHHHHHHCCC-----EEEEECccchhhhcCCeeee--c-
Confidence 4688999999999977664 6666654 4777899999999999999 99999999855432222111 1
Q ss_pred cccccEEEEc--CCCCCCCCCCceeEEeehhhh-hhhcCCccccCC-------------------C------CCcccCCC
Q 011842 295 KKPIGSVSVS--GHKFVGCPMPCGVQITRMEHI-NVLSSNVEYLAS-------------------R------DATIMGSR 346 (476)
Q Consensus 295 ~~~~Dsi~~s--~hK~l~~p~~~G~l~~~~~~~-~~l~~~~~yl~~-------------------~------~~~~~~sr 346 (476)
- .|.-++| ..|.+.++-| |+++++++.+ +.+.....+-.. . +..+....
T Consensus 209 -~-gd~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (438)
T PRK15407 209 -F-GDIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSH 285 (438)
T ss_pred -c-CceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccc
Confidence 1 2444444 4466666554 8999987632 211100000000 0 00000001
Q ss_pred CCh--hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC
Q 011842 347 NGH--APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG 388 (476)
Q Consensus 347 ~~~--~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g 388 (476)
.|. ..-.+.+++.....+.+++++++-+++++++.+.|.+.+
T Consensus 286 ~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~ 329 (438)
T PRK15407 286 LGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLE 329 (438)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 111 011233334333456778899999999999999998764
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-17 Score=159.40 Aligned_cols=243 Identities=17% Similarity=0.184 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEeCCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYRMECVKVDCLI 215 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~~ 215 (476)
..-.++.+.+++++|.+. .+|+++||+||.+++.+... |+..|++...+|..... ...+.|++++.++.++
T Consensus 29 ~~~~~l~~~i~~l~g~e~----a~f~~sGT~An~~al~~~~~--~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~ 102 (290)
T PF01212_consen 29 PTTARLEERIAELFGKEA----ALFVPSGTMANQLALRAHLR--PGESVICADTAHIHFDETGAIEELSGAKLIPLPSDD 102 (290)
T ss_dssp HHHHHHHHHHHHHHTSSE----EEEESSHHHHHHHHHHHHHH--TTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECT
T ss_pred hhHHHHHHHHHHHcCCCE----EEEeCCCChHHHHHHHHHHh--cCCceeccccceeeeeccchhhHhcCcEEEECCCcc
Confidence 455566677888999874 67999999999999999885 99999999999987653 2356799999999876
Q ss_pred CCccCHHHHHHHHHcCC---CCcEEEEEeeCCCcc-ccc---cCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 216 SGEIDCADFKAKLLQNK---DKPAIINVNIGTTVK-GAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~t-G~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+|.+|+++|++.+.+.. ..|.+|.++.+++.. |.+ +.|++|.++|++||+ .+|+|||--+-.......
T Consensus 103 ~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl-----~lhmDGARl~~a~~~~~~ 177 (290)
T PF01212_consen 103 DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGL-----PLHMDGARLANAAAALGV 177 (290)
T ss_dssp GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT------EEEEEETTHHHHHCHHHH
T ss_pred cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCce-----EEEEehhhHHHhhhcccc
Confidence 69999999999998743 456788887766653 554 568899999999999 999999952111100000
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH-HHH--HHHHHhChhc
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI-FLW--YTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l-~~~--~~l~~~g~~g 365 (476)
..-+....+|+++++++|.++.|. -++++.++++++.......++.+. +. ..+..+. .++ .++.. .+.
T Consensus 178 -~~~e~~~~~D~v~~~~tK~~g~~~-Gavl~~~~~~i~~~~~~~k~~gg~---~~--~~G~~~a~~~~~~~~l~~--l~~ 248 (290)
T PF01212_consen 178 -SLAEIAAGADSVSFGGTKNGGAPG-GAVLAGNKEFIAKARRQRKRLGGG---MR--QAGVLAAAELYQFAALRA--LEL 248 (290)
T ss_dssp -HHHHHHTTSSEEEEETTSTT-SSS-EEEEEESHHHHHHHHHHHHHHTHH---HH--HTTHHHHHHHHHHHHHCH--EEC
T ss_pred -cHHHHhhhCCEEEEEEEccccccc-ceEEEechHHHHHHHHHHHHhccC---ee--ecceeeeechhhHHHHHH--HHh
Confidence 001223459999999999999654 567777777543322112222111 00 0111111 111 22222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVV 401 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~ 401 (476)
......+..+++++|.+.|++.|+....++.+|.++
T Consensus 249 ~~~~~~~~~~~A~~La~~l~~~~~~~~~~~~tn~~~ 284 (290)
T PF01212_consen 249 WLERARHANAMAKRLAAGLEALGGVLPRPVETNQVF 284 (290)
T ss_dssp SHHHHHCHHHHHHCHHHCHHEECEEEETTSS-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCcEEe
Confidence 366778888999999999999988755555565543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-14 Score=146.68 Aligned_cols=290 Identities=11% Similarity=0.109 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH-HHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA-ARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~-~~~~G~~v~~v~~~ 214 (476)
...+||++ +++++|.+. ++.|++||.|......+. ..||++| +.++|+.-..+ +...|+.++-++.+
T Consensus 72 s~~~lE~~----va~~~G~~~----av~v~sGT~Al~ll~~l~--l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~d 139 (450)
T TIGR02618 72 NFYHLERT----VRELYGFKY----VVPTHQGRGAENLLSQIA--IKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIID 139 (450)
T ss_pred cHHHHHHH----HHHHHCCCe----EEEcCCHHHHHHHHHHhC--CCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecc
Confidence 45677766 566788875 899999999966543232 3488877 56788665555 68888866666443
Q ss_pred ----------CCCccCHHHHHHHHHcCCC-CcEEEEEeeCCCcc-ccc---cCHHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 215 ----------ISGEIDCADFKAKLLQNKD-KPAIINVNIGTTVK-GAV---DDLDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 215 ----------~~g~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~t-G~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
.+|.+|+++|+++|++.+. ...+|.+....+.. |.. .++++|.++|++||+ .+|.|+|+.
T Consensus 140 ea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl-----~vi~DaAR~ 214 (450)
T TIGR02618 140 EAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGI-----KVFYDATRC 214 (450)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCC-----EEEEEccch
Confidence 3589999999999986431 12244444444444 666 679999999999999 999999986
Q ss_pred cc-cc------cccccCCCC----CCcccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCC-ccccCCCCCcccCCC
Q 011842 280 GL-MM------PFVKKAPKV----SFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSN-VEYLASRDATIMGSR 346 (476)
Q Consensus 280 g~-~~------~~~~~~~~~----~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~-~~yl~~~~~~~~~sr 346 (476)
.. .+ +.....+.. +....+|++++|+||-.++|. .|+++++++ +.+..... ..| ..-.+ .|.-
T Consensus 215 ~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~-GG~l~~~d~~l~~k~r~~~~~~--eG~~t-yGgl 290 (450)
T TIGR02618 215 VENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNI-GGFLCMNDDEMFQSAKELVVVF--EGMPS-YGGL 290 (450)
T ss_pred hhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCC-ceEEEeCCHHHHHHHHHHhhhc--CCccc-cCch
Confidence 42 11 111111110 112358999999999999887 466666765 44433221 122 11011 1111
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEec----CC--cH-----HHhhcee
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER----PQ--DE-----EFVRRWQ 415 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~----~~--~~-----~~~~~~~ 415 (476)
.+....++..++...- -+...++....++||.+.|.+.|+.++.+..++.|++.. |. .. .+...+.
T Consensus 291 a~r~~~ala~gL~e~~---~~~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly 367 (450)
T TIGR02618 291 AGRDMEAMAIGIREAV---DYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIY 367 (450)
T ss_pred hhhhHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHH
Confidence 1111112222332211 135566667789999999999998776677788888752 21 11 1111111
Q ss_pred ---------e--------cc-------cCCEEEEEEcCC-CCHHHHHHHHHHHHHHHHH
Q 011842 416 ---------L--------AC-------QGNIAHVVVMPN-VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 416 ---------l--------~~-------~~~~lRv~~~~~-~T~edid~~~~~l~~~~~~ 449 (476)
+ +. .-..+|+.+... .|.+++|.+.+.|..+.+.
T Consensus 368 ~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 368 VETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred HHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 0 11 124678876544 4999999999999888654
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=142.89 Aligned_cols=318 Identities=12% Similarity=-0.033 Sum_probs=207.9
Q ss_pred CCcCCcchHHHHHHHHHhhCCCC---CCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCC-chhHHHHHHHHH
Q 011842 103 PYNLDFDYGALAQLQHFSINNLG---DPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNC-GTEGNLHGILVG 178 (476)
Q Consensus 103 p~~~~~~~~~l~~~l~~~~n~~g---~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~g-gt~An~~al~aa 178 (476)
|.....+...+.++....+|..+ +..+.++.+....++.+++.+.++++++.+. ++..+|.+| ||.+.-.+.+..
T Consensus 10 aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~-~y~Vlfl~GggT~~~ea~~~Nl 88 (364)
T PRK12462 10 GGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPD-EYGVVFLQGGSSLQFSMIPMNF 88 (364)
T ss_pred CCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEeccHHHHHHHHHHHc
Confidence 44444455667777666666333 3345566666778899999999999999974 356777666 555555555555
Q ss_pred HhhCCCcEEE-ecCCCchH--HHHHHHHcCCeEEEEeCCC----CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc
Q 011842 179 REVFPDGILY-ASRESHYS--VFKAARMYRMECVKVDCLI----SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD 251 (476)
Q Consensus 179 ~~~~p~~~Vl-~s~~~H~S--~~~~~~~~G~~v~~v~~~~----~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id 251 (476)
.. +++.++ +-...++| +.+.++.+| ++..+...+ ..-.+++.+ .+.++ ..+|.+++..|.+|...
T Consensus 89 l~--~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d---~~~v~~t~NETstGv~~ 160 (364)
T PRK12462 89 SR--PGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDAR---APFRHYVSNETVEGLQF 160 (364)
T ss_pred CC--CCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCC---CcEEEEccCCCCceEec
Confidence 44 666332 33345555 455666666 555554211 123455554 12222 24788999999999998
Q ss_pred CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-
Q 011842 252 DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS- 330 (476)
Q Consensus 252 ~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~- 330 (476)
| ++.+.++. +++||++.+.+..| +++.+ .|.+..+++|.+| |.|.++++++++.++....
T Consensus 161 ~-----~~~~~~~~-----llvvD~sS~~~s~p-------id~~~-~dvi~agsQKnlg-P~Gltvvivs~~al~~~~~~ 221 (364)
T PRK12462 161 P-----DAAGLPDS-----PLIADMSSDFMSRP-------FDVEA-YGMVYAHAQKNLG-PAGVTVAIIRRALLERVPDT 221 (364)
T ss_pred C-----cccccCCC-----eEEEEcCchhhCCC-------CChHH-ccEEEeeccccCC-CCceEEEEECHHHHhhcccc
Confidence 6 33334678 99999997665554 55544 4999999999999 9999999999997755432
Q ss_pred CccccCC----CCCcccCCCCChhHHHHHHHHHHhChh--cHHHHHHHHHHHHHHHHHHHHhcC-CeEee-cCC---eeE
Q 011842 331 NVEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGYK--GFQKEVQKCLRNAHYLKDRLLDAG-ISAML-NEL---SST 399 (476)
Q Consensus 331 ~~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~~--g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~-~~~---~~i 399 (476)
.+.|+.- ...+...|++......+-.+++.+..+ |++++.++..+.++.+++.|.+.+ +.... .+. ...
T Consensus 222 ~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mn 301 (364)
T PRK12462 222 LPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMN 301 (364)
T ss_pred CCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcce
Confidence 2334321 112233466655556666777777666 999999999999999999999986 54432 221 256
Q ss_pred EEEecCCc---HHHhhce---ee---c--ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 400 VVFERPQD---EEFVRRW---QL---A--CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 400 v~f~~~~~---~~~~~~~---~l---~--~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|+|+.+++ ..|.+.. .+ . ..-+.+|+++-..++.|+++.|++-|++-.+
T Consensus 302 v~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 302 VAFRFRQPRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 77776543 2232211 11 1 1125699999999999999999999987654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=146.19 Aligned_cols=274 Identities=18% Similarity=0.228 Sum_probs=185.1
Q ss_pred cccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HH
Q 011842 128 FIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RM 203 (476)
Q Consensus 128 ~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~ 203 (476)
+.+++.+ ..-...+.+.++.|.|.+. ++++++|..|+..++.+... +|+.|+++...|......+ ..
T Consensus 47 ~~Y~R~g---nPt~~~le~~la~Le~g~~----a~~~~SGmaAi~~~l~~ll~--~Gd~iv~~~~~Y~~t~~~~~~~l~~ 117 (386)
T PF01053_consen 47 YIYSRYG---NPTVRALEQRLAALEGGED----ALLFSSGMAAISAALLALLK--PGDHIVASDDLYGGTYRLLEELLPR 117 (386)
T ss_dssp CSBTTTC----HHHHHHHHHHHHHHT-SE----EEEESSHHHHHHHHHHHHS---TTBEEEEESSSSHHHHHHHHHCHHH
T ss_pred cceeccc---cccHHHHHHHHHHhhcccc----eeeccchHHHHHHHHHhhcc--cCCceEecCCccCcchhhhhhhhcc
Confidence 4444433 3555566667888888753 78899999999888888765 8999999998887655444 34
Q ss_pred cCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC-CCCCceEEEEecCccccc
Q 011842 204 YRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG-FTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 204 ~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g-~~~~~~~lhvD~a~~g~~ 282 (476)
.|+++..++.. |+++|+++++++++ +|.+..++|++..+.||++|+++|+++| + +++||..++..+
T Consensus 118 ~gv~v~~~d~~-----d~~~l~~~l~~~t~---~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~-----~~vVDnT~atp~ 184 (386)
T PF01053_consen 118 FGVEVTFVDPT-----DLEALEAALRPNTK---LVFLESPSNPTLEVPDLEAIAKLAKEHGDI-----LVVVDNTFATPY 184 (386)
T ss_dssp TTSEEEEESTT-----SHHHHHHHHCTTEE---EEEEESSBTTTTB---HHHHHHHHHHTTT------EEEEECTTTHTT
T ss_pred cCcEEEEeCch-----hHHHHHhhccccce---EEEEEcCCCcccccccHHHHHHHHHHhCCc-----eEEeecccccee
Confidence 59999998765 89999999988765 8999999999999999999999999998 9 999999987653
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCC---ceeEEeeh--hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMP---CGVQITRM--EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~---~G~l~~~~--~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
.. + .+.-++|++.-|..|+++ +.+ .|++++++ ++.+.+......+ |.- ..+...|..
T Consensus 185 ~~--~-----pL~~GaDivv~S~TKyl~-Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~--------G~~--~~p~da~ll 246 (386)
T PF01053_consen 185 NQ--N-----PLELGADIVVHSATKYLS-GHSDVMGGAVVVNGSSELYDRLREFRRLL--------GAT--LSPFDAWLL 246 (386)
T ss_dssp TC--------GGGGT-SEEEEETTTTTT-TSSSE-EEEEEESSHHHHHHHHHHHHHHH--------T-B----HHHHHHH
T ss_pred ee--c-----cCcCCceEEEeecccccc-CCcceeeEEEEECchhhhhhhhcchhhhc--------Ccc--chHHHHHHH
Confidence 31 0 111249999999999998 344 67788776 3444332211111 111 235666665
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE-eecC-----------------CeeEEEEecCCcH----HHhhcee
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA-MLNE-----------------LSSTVVFERPQDE----EFVRRWQ 415 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~-~~~~-----------------~~~iv~f~~~~~~----~~~~~~~ 415 (476)
++ |.+.+.-++++..++|..+.+.|++.+... +..| ...++.|...+.. .|.+.+.
T Consensus 247 ~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~ 324 (386)
T PF01053_consen 247 LR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALK 324 (386)
T ss_dssp HH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-S
T ss_pred hc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhh
Confidence 55 567889999999999999999999987543 3322 1257888876542 2333332
Q ss_pred e----------------cc-----------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 416 L----------------AC-----------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 416 l----------------~~-----------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+ +. ..+.+|+++. -||++.++++|+++.
T Consensus 325 l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG----lEd~~dLi~Dl~~AL 385 (386)
T PF01053_consen 325 LFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG----LEDPDDLIADLEQAL 385 (386)
T ss_dssp SSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE------SS-HHHHHHHHHHHH
T ss_pred hHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec----cCCHHHHHHHHHHhc
Confidence 1 00 1256898886 567777777777664
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-14 Score=144.13 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCCeEE--
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMECV-- 209 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~-- 209 (476)
.+.+.++.+++.+..+.+ ..+|+++|++||..|+.+++.. .+..+|......|.+...++...|....
T Consensus 77 ~~~~~~la~~l~~~~~~~----~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFD----KVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred CHHHHHHHHHHhhccCCC----EEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 367778888888765443 3899999999999999999853 1234566666778777777666654211
Q ss_pred -EEeCCCC----CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 210 -KVDCLIS----GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 210 -~v~~~~~----g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
..|.... ..-|+++|++.+.+. ..+|++....++.|.+.| +++|.++|++||+ ++++|++|.|
T Consensus 153 ~~~~~~~~~~~~~~~d~~~l~~~l~~~---~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~-----llI~DEv~tG 224 (395)
T PRK03715 153 IFAPQVPGFPKAELNDIASVEKLITDK---TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGL-----LLIVDEVQTG 224 (395)
T ss_pred CCCCCCCCceeeCCchHHHHHHHcCCC---ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEeccccC
Confidence 1111111 123789999988643 346777766778888877 9999999999999 9999999986
Q ss_pred cccccccc-C-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 281 LMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 281 ~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
+ ....+. . ..+.. ..|.++++ |.++.+.++|.++++++.. .+. ..+. ..|+.+.. .......+++
T Consensus 225 ~-GRtG~~~a~~~~gv--~PDi~t~g--K~lg~G~p~~av~~~~~i~-~~~--~~~~---~~T~~g~p--l~~aaala~L 291 (395)
T PRK03715 225 C-GRTGTLFAYELSGI--EPDIMTLG--KGIGGGVPLAALLAKAEVA-VFE--AGDQ---GGTYNGNP--LMTAVGVAVI 291 (395)
T ss_pred C-CCCcchhhHhhcCC--CCceeeeh--hhhhCCcceEEEEEccccc-ccc--CCCc---CCCCCCCH--HHHHHHHHHH
Confidence 3 212211 0 01111 26877664 8888778899999988763 111 1111 12222221 1122233344
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCc--HHH---hh-----ceee-cccCCEE
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQD--EEF---VR-----RWQL-ACQGNIA 423 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~--~~~---~~-----~~~l-~~~~~~l 423 (476)
+.+.. ++.+++..++.++|+++|++. ++..+. ....++.+...++ ..+ .. ++.+ ....+.+
T Consensus 292 ~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~l 367 (395)
T PRK03715 292 SQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAPRPNLL 367 (395)
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCchHHHHHHHHHhccCCCEEEeecCCCEE
Confidence 44422 456788888899999988764 332222 2234444444321 111 11 3333 2446789
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
|++++..+|++|||.++++|+++.+.+
T Consensus 368 R~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 368 RFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999987653
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=145.25 Aligned_cols=284 Identities=15% Similarity=0.122 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------C-C-cEEEecCCCchHH-HHHHHHcCC---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------P-D-GILYASRESHYSV-FKAARMYRM--- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p-~-~~Vl~s~~~H~S~-~~~~~~~G~--- 206 (476)
+...++.+.++++++.+ ..+|+++|++||-.|+..++... + + ..|+....+|... ..+..+.+-
T Consensus 117 ~~~~~la~~L~~~~~~~----~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~ 192 (474)
T PLN02624 117 DKFPEFAEYLTSMFGYD----MVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA 192 (474)
T ss_pred HHHHHHHHHHHhhcCCC----eEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence 44556677777877764 28999999999999999988631 1 2 2444444333332 222222110
Q ss_pred ---------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|.+ |++.|++.++....+..+|++....+++|.+.| +++|.++|++||+ +++
T Consensus 193 ~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gi-----llI 262 (474)
T PLN02624 193 TRGFGPLLPGHLKVDFG-----DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNV-----LMI 262 (474)
T ss_pred cccCCCCCCCceEeCCC-----CHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 13334433 789999999765455667888888899999877 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.|+.. ...... .+.. ...|+++++ |.++.+ +++|+++.+.+++..+.... + ..++.+.. ...
T Consensus 263 ~DEv~tG~Gr-tG~~~a-~~~~~i~pDiv~ls--K~lggG~~pigav~~~~~i~~~~~~~~-~----~~T~~g~p--l~~ 331 (474)
T PLN02624 263 ADEIQTGLAR-TGKMLA-CDWEEVRPDVVILG--KALGGGVIPVSAVLADKDVMLCIKPGE-H----GSTFGGNP--LAS 331 (474)
T ss_pred EeccccCcCc-Ccchhh-HHhcCCCCCEEEec--ccccCCCCcceeeeecHHHHhHhccCC-c----CCCCCCCH--HHH
Confidence 9999976322 111110 1111 126888764 887766 78999999887655443211 0 11222211 112
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC--Ce---EeecCCeeEEE--EecCC--c---HHHh-----hce
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--IS---AMLNELSSTVV--FERPQ--D---EEFV-----RRW 414 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~---~~~~~~~~iv~--f~~~~--~---~~~~-----~~~ 414 (476)
....++++.+.. .+..++..++.++|++.|++.. +. ....+...++. |..+. . .++. +++
T Consensus 332 aaa~aaLe~l~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV 408 (474)
T PLN02624 332 AVAMAALQVVQD---EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGL 408 (474)
T ss_pred HHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCe
Confidence 222233333322 2345566677777877776642 11 11112222333 32221 1 1222 223
Q ss_pred ee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 415 QL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 415 ~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+ +...+.+|++++..+|+++|+.+++.|+++.+..
T Consensus 409 ~v~p~~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 409 LAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred EEecCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 33 3345789999989999999999999998887554
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-14 Score=144.46 Aligned_cols=293 Identities=11% Similarity=0.018 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHH-HHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVF-KAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~-~~~~~~G~----- 206 (476)
+.+.++.+.+.+++.-.. ...+|+++||+|+..|++.+|.. ..+..|+.-+.+|.... -+....+-
T Consensus 85 ~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~ 162 (423)
T PRK05964 85 EPAERLAQRLVALTPGGL--DHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHA 162 (423)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccc
Confidence 556677788888764211 24899999999999999999864 12345555444443332 22221111
Q ss_pred -------eEEEEeCCCC--CccCHHHHHHHHHcCCCCcEEEEEee-CCCcccccc----CHHHHHHHHHHhCCCCCceEE
Q 011842 207 -------ECVKVDCLIS--GEIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVD----DLDLVIQTLEESGFTQDRFYI 272 (476)
Q Consensus 207 -------~v~~v~~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id----~l~~I~~ia~~~g~~~~~~~l 272 (476)
.+..++...+ ...+++.|++.+.+..+....|++.. ..+..|.+- .+++|.++|++||+ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~-----ll 237 (423)
T PRK05964 163 LYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGV-----LL 237 (423)
T ss_pred cccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCC-----EE
Confidence 1233333211 12338889999976554455555543 244455443 39999999999999 99
Q ss_pred EEecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCC---ccccCCCCCcccCCCC
Q 011842 273 HCDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSN---VEYLASRDATIMGSRN 347 (476)
Q Consensus 273 hvD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~---~~yl~~~~~~~~~sr~ 347 (476)
++|++|.|+.... .... .... -..|.++++ |+++.+ .++|+++.++++.+.+... ..++.+ .|+.+
T Consensus 238 I~DEv~tg~gr~G-~~~a-~~~~~v~pDi~~~~--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~--~T~~~--- 308 (423)
T PRK05964 238 IFDEIATGFGRTG-TLFA-CEQAGVSPDIMCLS--KGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHS--PSYTA--- 308 (423)
T ss_pred EEechhhCCCcCc-chhH-HHhcCCCCCeeeee--hhhhcCcccceEEEEcHHHHHhhhcCCcccccccC--CCCCc---
Confidence 9999997642211 1100 0111 126877654 999877 6899999998877665321 111111 11111
Q ss_pred ChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEee--cCCeeEEEEecCCc------HHH-----hhc
Q 011842 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAML--NELSSTVVFERPQD------EEF-----VRR 413 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~--~~~~~iv~f~~~~~------~~~-----~~~ 413 (476)
.++...+++..+..-.-+...++..++.++|++.|++.. ...+. .....++.+...++ ..+ .++
T Consensus 309 --np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~G 386 (423)
T PRK05964 309 --NPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERG 386 (423)
T ss_pred --CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCC
Confidence 233333333333111113466777888888988887752 21111 12234444443321 112 123
Q ss_pred eeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 414 WQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 414 ~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+.+...++.+|++.+..+|++|||.++++|+++.++
T Consensus 387 v~v~~~~~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 387 VLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred eEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 334444578999999999999999999999998765
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=148.05 Aligned_cols=225 Identities=14% Similarity=0.007 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
...++|++ +++++|.+. ++.|++||.|+.+++.++. ..+|++|+++..++.+...++...|++++.++++
T Consensus 26 ~~~~fE~~----~a~~~g~~~----~~~~~sgt~Al~~al~~l~-~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 26 YVEEFEKE----FAEYFGVKY----AVAVSSGTSALHLALRALG-LGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHH----HHHHHTSSE----EEEESSHHHHHHHHHHHTT-GGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BET
T ss_pred HHHHHHHH----HHHHhCCCe----EEEeCChhHHHHHHHHhcC-CCcCceEecCCCcchHHHHHHHHhccEEEEEeccC
Confidence 45566666 566677654 8999999999999988843 3489999999999999999999999999999998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+++.||++.|+++|+++++ .|++++- .|...|+++|.++|+++|+ +|+.|+||+.+..-..+.. +
T Consensus 97 ~~~~id~~~~~~~i~~~t~---ai~~~h~---~G~~~d~~~i~~~~~~~~i-----~lIeD~a~a~g~~~~g~~~----G 161 (363)
T PF01041_consen 97 ETLNIDPEALEKAITPKTK---AILVVHL---FGNPADMDAIRAIARKHGI-----PLIEDAAQAFGARYKGRPV----G 161 (363)
T ss_dssp TTSSB-HHHHHHHHHTTEE---EEEEE-G---GGB---HHHHHHHHHHTT------EEEEE-TTTTT-EETTEET----T
T ss_pred CcCCcCHHHHHHHhccCcc---EEEEecC---CCCcccHHHHHHHHHHcCC-----cEEEccccccCceeCCEec----c
Confidence 6799999999999998885 6666554 4888899999999999999 9999999985543222221 1
Q ss_pred cccccEEEEcC--CCCCCCCCCceeEEeehh-hhhhh---cCCc-------cccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 295 KKPIGSVSVSG--HKFVGCPMPCGVQITRME-HINVL---SSNV-------EYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 295 ~~~~Dsi~~s~--hK~l~~p~~~G~l~~~~~-~~~~l---~~~~-------~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
. .-|.-++|+ .|.+.++- .|+++++++ +.+.+ .... .|..... .|.......+. +++...
T Consensus 162 ~-~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~g~n~rm~~~~--AAigl~ 234 (363)
T PF01041_consen 162 S-FGDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP---PGYNFRMSELQ--AAIGLA 234 (363)
T ss_dssp S-SSSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS---S--B-B-BHHH--HHHHHH
T ss_pred C-CCCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCcccccccccccc---CCcccccHHHH--HHHHHH
Confidence 1 136555555 59886544 588888875 33222 1110 1110000 11111112222 232222
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~ 391 (476)
..+.+++.+++.+++++++.+.|...+...
T Consensus 235 QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~ 264 (363)
T PF01041_consen 235 QLKRLDEIIARRRENAQRYREALAGIPGIK 264 (363)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHTTGTTEE
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCCcc
Confidence 346788899999999999999999987653
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=146.62 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=172.0
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc----hHHHHHHHHcCCeEEEEeCCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH----YSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H----~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
+++.+.++++.|.+. .+.+++|+.|+.+++.+... |||+|+++...| ..+...+...|++++.++.++..
T Consensus 67 ~~lE~~la~leg~~~----av~~sSG~aAi~~al~all~--~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~ 140 (384)
T PRK06434 67 QAFEEKYAVLENAEH----ALSFSSGMGAITSAILSLIK--KGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140 (384)
T ss_pred HHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHhC--CCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChh
Confidence 344444778888764 78999999999999887754 899999977633 22336667789999999886322
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
.++ +.+. ++.+|.+.+++++++.+.|+++|+++|+++++ +||++++..+.. +. + ...
T Consensus 141 ~~~-------l~~~--~tklv~~e~~snpt~~v~Di~~I~~la~~~~l-------vVD~t~~s~~~~--~p---l--~~g 197 (384)
T PRK06434 141 SLD-------FDPS--NYDLIYAESITNPTLKVPDIKNVSSFCHENDV-------IVDATFASPYNQ--NP---L--DLG 197 (384)
T ss_pred hee-------ecCC--CeeEEEEEcCCCCCceeecHHHHHHHHHHcCe-------EEECCCCCcccC--Cc---h--hcC
Confidence 222 2221 23488889999999999999999999999986 459998654321 11 1 134
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+|+++.|.||+++++.. .|+++++++ +.+.+...... .|.. ..++..|.. ..|.+.+..++++..
T Consensus 198 aDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~--------~G~~--~~~~~A~l~--~~gL~tL~~R~~r~~ 265 (384)
T PRK06434 198 ADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKT--------LGSN--PDPIQAYLA--LRGLKTLGLRMEKHN 265 (384)
T ss_pred CCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHh--------cCCC--CCHHHHHHH--HhCCCcHHHHHHHHH
Confidence 89999999999997665 677777654 32322110001 1111 123444443 445688999999999
Q ss_pred HHHHHHHHHHHhcCCe-EeecCC-----------eeEEEEecCCc---HHHhhceeecc---------------------
Q 011842 375 RNAHYLKDRLLDAGIS-AMLNEL-----------SSTVVFERPQD---EEFVRRWQLAC--------------------- 418 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~-~~~~~~-----------~~iv~f~~~~~---~~~~~~~~l~~--------------------- 418 (476)
+++..+.+.|++.+.. .+..|. ..+++|...+. ..|.+.+.+..
T Consensus 266 ~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~ 345 (384)
T PRK06434 266 KNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHS 345 (384)
T ss_pred HHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhCCcceEccCCCCCCeeeECCCccccc
Confidence 9999999999998743 232222 46788887532 23333333210
Q ss_pred ------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 ------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 ------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
..+.+|+++. -||++.++++|+++.
T Consensus 346 ~~~~e~~~~~gi~~~liRlsvG----lEd~~dLi~dl~~Al 382 (384)
T PRK06434 346 SLSPEERERLGISDNLVRFSIG----IEDIDDLIKDIENAL 382 (384)
T ss_pred cCCHHHHHhcCCCcCeEEEEeC----cCCHHHHHHHHHHHh
Confidence 0246788876 467777777777765
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-14 Score=134.11 Aligned_cols=291 Identities=12% Similarity=0.070 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc-----hHHHHHHHHcCCeEEEEe
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH-----YSVFKAARMYRMECVKVD 212 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H-----~S~~~~~~~~G~~v~~v~ 212 (476)
..+-+.+.+.++.++|...++ .+++.+.|.-++-.+.++....++..||+++-.- |.....++++|..
T Consensus 75 ~~lp~~lgdklApLiGA~~~E--vvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~----- 147 (407)
T COG3844 75 FDLPERLGDKLAPLIGARAGE--VVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG----- 147 (407)
T ss_pred hhchhHHHHHhhhhhcCCCCc--eEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc-----
Confidence 467778889999999998654 6666544444444555565555677777776543 3344566666654
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
.+-.+.+.++++++++++++. +|.+++....||..-++.+|..++++||+ ++.-|=||+.+..| +
T Consensus 148 ~~~~~~~~P~~~~~~~~dd~A---vV~L~~V~y~TGql~dm~aiT~~AH~~ga-----lv~wDLAHsaGavp-------~ 212 (407)
T COG3844 148 YDLEGVIAPRALEEAITDDVA---VVLLSHVNYKTGQLLDMRAITALAHQHGA-----LVGWDLAHSAGAVP-------V 212 (407)
T ss_pred ccceeeeChHHHHHhhccceE---EEEeccccccccceeeHHHHHHHHHhcCc-----eEEeehhcccCCcc-------e
Confidence 223456688899999988764 88899999999999999999999999999 99999999998887 3
Q ss_pred CCcc-cccEEEEcCCCCCC-CCCCceeEEeehhhhhhh-cCCccccCCCC---------------CcccCCCCChhHHHH
Q 011842 293 SFKK-PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVL-SSNVEYLASRD---------------ATIMGSRNGHAPIFL 354 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l-~~~~~yl~~~~---------------~~~~~sr~~~~~l~~ 354 (476)
+... ++|+-++++||+|. +|...+++++.+++.+.. ....-+....+ .-.+++.+......+
T Consensus 213 ~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal 292 (407)
T COG3844 213 DLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAAL 292 (407)
T ss_pred eecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHH
Confidence 4333 49999999999995 466678888887754322 11112222111 112344444444456
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCC----eeEEEEecCCcHHHhhcee---e---cccC
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNEL----SSTVVFERPQDEEFVRRWQ---L---ACQG 420 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~----~~iv~f~~~~~~~~~~~~~---l---~~~~ 420 (476)
..+|..+...++.+..++...+++||.+.++.. ++.+..|.. ..-|+|..|.....++.+. + ....
T Consensus 293 ~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rGVigD~R~P 372 (407)
T COG3844 293 EGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRGVIGDFREP 372 (407)
T ss_pred hhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcCccccccCC
Confidence 677777777889999999999999999999874 333333321 3678888887655544332 1 2345
Q ss_pred CEEEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPN-VTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 421 ~~lRv~~~~~-~T~edid~~~~~l~~~~~~~ 450 (476)
+.+|+.++|. ++.+||=..+++|+++.++.
T Consensus 373 ~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 373 DVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred CeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 8999988765 58999999999999998764
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-13 Score=138.75 Aligned_cols=336 Identities=15% Similarity=0.151 Sum_probs=179.3
Q ss_pred CcHHHHHHHHHHHHhcccc--cccCCCCcCCcchHHHHH-HHHH--hhCCCCCCcccCccchhhHHHHHHHHHHHHHHcC
Q 011842 79 AYMAGVLARYRKTLMERTK--HHLGYPYNLDFDYGALAQ-LQHF--SINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 153 (476)
Q Consensus 79 ~~~~~il~~~~~~~~~~~~--~~~g~p~~~~~~~~~l~~-~l~~--~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g 153 (476)
.+-.+++..+.+....+.. .++|--.+.-+.++.+.. ++.. .+... .++. .....+.-+..-+...++++|.|
T Consensus 47 ~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaY-tPYQ-pEisQG~Lq~lfe~Qs~i~eLTG 124 (429)
T PF02347_consen 47 LSEYELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRPEFYTAY-TPYQ-PEISQGRLQALFEYQSMICELTG 124 (429)
T ss_dssp --HHHHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCHHCCCS--STTS-GGGBHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccChhhhccC-CCCC-cHHHHHHHHHHHHHHHHHHHhhC
Confidence 4456888888887655432 233322222233455555 3321 11110 1111 11233556677788899999999
Q ss_pred CCCCcccEEEcCCchhHHHHHHHHH-Hhh-CCCcEEEecCCCchHHHHHHHH----cCCeEEEEeCCCCCccCHHHHHHH
Q 011842 154 LENNEYWGYITNCGTEGNLHGILVG-REV-FPDGILYASRESHYSVFKAARM----YRMECVKVDCLISGEIDCADFKAK 227 (476)
Q Consensus 154 ~~~~~~~g~~t~ggt~An~~al~aa-~~~-~p~~~Vl~s~~~H~S~~~~~~~----~G~~v~~v~~~~~g~~D~~~Le~~ 227 (476)
++..+ .-.-.++| |.-.|++++ |.. ..+..|++++..|+.....++. .|++++.++.++++..|
T Consensus 125 mdvaN--aSlyd~at-A~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d------- 194 (429)
T PF02347_consen 125 MDVAN--ASLYDGAT-AAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD------- 194 (429)
T ss_dssp SSEE---SEBSSCCH-HHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB--------
T ss_pred CCccC--CCCCChhH-HHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc-------
Confidence 98421 12233443 333333333 222 2346999999999988765443 58899999998777777
Q ss_pred HHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCC
Q 011842 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHK 307 (476)
Q Consensus 228 l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK 307 (476)
......|+++.|+ ..|.++++++|+++++++|. ++++ ++---... ..+ -.+.-++|++ +..||
T Consensus 195 ----~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~ga-----l~~~-~ad~~aL~-~l~----~Pge~GADI~-vg~~Q 257 (429)
T PF02347_consen 195 ----DDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGA-----LVIV-GADPNALG-GLK----SPGEYGADIV-VGEHQ 257 (429)
T ss_dssp ----STTEEEEEEESS--TTSB--THHHHHHHHHHTT------EEEE-CGGCCGCC-TC------GGGGT-SEE-EECCT
T ss_pred ----ccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCC-----EEEE-ecCHHHHh-CcC----ChhhcCccEE-eeCCC
Confidence 2234578887775 66999999999999999999 8877 66321111 011 1122248999 55588
Q ss_pred CCCCC-----CCceeEEeehhhhhhhcCC-----------ccc----------cCCC-CCcccCCCCChhHHHHHHHHHH
Q 011842 308 FVGCP-----MPCGVQITRMEHINVLSSN-----------VEY----------LASR-DATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 308 ~l~~p-----~~~G~l~~~~~~~~~l~~~-----------~~y----------l~~~-~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
.++.| ++.|++.+++++.+.++.. ..| +... ..+-.||..+..++..+..+.+
T Consensus 258 ~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~ 337 (429)
T PF02347_consen 258 TFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAY 337 (429)
T ss_dssp TTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHH
T ss_pred CCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 77766 4578899999887665321 011 1000 1122345444455667788899
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCCc--HHHhh-----ceeec-ccCCEEEEEEcCCC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQD--EEFVR-----RWQLA-CQGNIAHVVVMPNV 431 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~~--~~~~~-----~~~l~-~~~~~lRv~~~~~~ 431 (476)
+|.+|++++.++...+++|+.++|++.....+..+.. ..+....+.. .++.+ ++.+. ...+.+.+++...+
T Consensus 338 ~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~ 417 (429)
T PF02347_consen 338 LGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEGGLNLRYPDDGALLICVTETR 417 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT----EEEGGG-SSEEEEE--TT-
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhcCCCccccCCCeEEEEccCCC
Confidence 9999999999999999999999999873222323322 2333222221 11222 22221 12348889999999
Q ss_pred CHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNEL 443 (476)
Q Consensus 432 T~edid~~~~~l 443 (476)
|+||||+|+++|
T Consensus 418 t~edid~lv~~f 429 (429)
T PF02347_consen 418 TKEDIDRLVEAF 429 (429)
T ss_dssp -HHHHHHHHH--
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=140.04 Aligned_cols=290 Identities=12% Similarity=0.131 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH-HHHcCCeEEEEeC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA-ARMYRMECVKVDC- 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~-~~~~G~~v~~v~~- 213 (476)
...+||++ +++++|.+. .+.|++||.|+.++..+. ..||++| +..+|+.-..+ +...|+..+-+..
T Consensus 79 s~~~LE~~----vAe~lG~e~----aV~v~sGTaAl~ll~~l~--v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d 146 (460)
T PRK13237 79 NFYHLEET----VQEYYGFKH----VVPTHQGRGAENLLSRIA--IKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIID 146 (460)
T ss_pred cHHHHHHH----HHHHHCCCe----EEEeCCHHHHHHHHHHhC--CCCcCEE--CCccchHhhHHHHHhCCcEEEeeecc
Confidence 45677776 556678875 899999999998754433 3488865 66677666555 6777875544431
Q ss_pred ---------CCCCccCHHHHHHHHHcCCC-CcEEEEEeeCCCcc-cc---ccCHHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 214 ---------LISGEIDCADFKAKLLQNKD-KPAIINVNIGTTVK-GA---VDDLDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 214 ---------~~~g~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~t-G~---id~l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
..+|.||++.|+++|++.+. +..+|.+....+.. |. ..++++|.++|++||+ .+|.|+|+.
T Consensus 147 ~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl-----~Vi~DaAra 221 (460)
T PRK13237 147 EAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGI-----KVFFDATRC 221 (460)
T ss_pred cccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCC-----EEEEECcch
Confidence 23689999999999986532 22244444455555 33 3579999999999999 999999986
Q ss_pred cc---cc----cccccCCCC----CCcccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCC-ccccCCCCCcccCCC
Q 011842 280 GL---MM----PFVKKAPKV----SFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSN-VEYLASRDATIMGSR 346 (476)
Q Consensus 280 g~---~~----~~~~~~~~~----~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~-~~yl~~~~~~~~~sr 346 (476)
.+ ++ +.....+.. .....+|.+++|+||.+.+|. .|+++++++ +.+.+... ..|-.- .+ .+..
T Consensus 222 ~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~--~t-ygg~ 297 (460)
T PRK13237 222 VENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGM--PS-YGGM 297 (460)
T ss_pred hcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCC--cC-CCCh
Confidence 43 11 111111100 111248999999999999866 577888876 44433211 122100 01 1111
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-------cCCc----HHHhhcee
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-------RPQD----EEFVRRWQ 415 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-------~~~~----~~~~~~~~ 415 (476)
++....++...+... --.+.+++....++||.+.|.+.|+.++.|....-|.+. +|.. ..+...+.
T Consensus 298 ~grd~~alAvgl~E~---~~~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly 374 (460)
T PRK13237 298 AGRDMEAMAIGIEES---VQYEYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELY 374 (460)
T ss_pred hhhHHHHHHhHHHhh---chHHHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHH
Confidence 111122222223221 113677788889999999999999987766655555443 1111 11111111
Q ss_pred ------------e-----ccc-------CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHH
Q 011842 416 ------------L-----ACQ-------GNIAHVVVMPN-VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 416 ------------l-----~~~-------~~~lRv~~~~~-~T~edid~~~~~l~~~~~~ 449 (476)
+ +.. -..+|+.+... .|.+++|.+++.|..+.+.
T Consensus 375 ~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 375 IESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred HHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 0 111 24678876544 4999999999999888654
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=137.68 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEe-cCCCchHHHHHHHHcCCeEEE------E
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYA-SRESHYSVFKAARMYRMECVK------V 211 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~-s~~~H~S~~~~~~~~G~~v~~------v 211 (476)
+++.++.+++.. .+ + ...+|+++||+||..|+..++...++..|++ +...|.+...++...|.+... +
T Consensus 70 ~~~~~la~~l~~---~~-~-~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
T PRK04260 70 SLQEEVAQKLIG---DK-D-YLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGV 144 (375)
T ss_pred HHHHHHHHHHhc---Cc-C-CEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCC
Confidence 555565554432 11 1 2368999999999999999986545555554 556687766665554432110 0
Q ss_pred eCCCCC-ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 212 DCLISG-EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 212 ~~~~~g-~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+..... ..|+++|++.+.++ ..+|++....+++|.+.+ +++|.++|+++|+ ++++|++|.++. ...
T Consensus 145 ~~~~~~~~~dl~~l~~~l~~~---~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~-----~~i~De~~~g~g-~~g 215 (375)
T PRK04260 145 PHFSYAIFNDLNSVKALVNKN---TAAVMLELVQGESGVLPADKDFVKALADYCQETGI-----LLIVDEVQTGMG-RTG 215 (375)
T ss_pred CCeEEeCCCCHHHHHHhcCCC---eEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEechhhCCC-ccc
Confidence 000000 23899999988543 346777767778888755 8999999999999 999999997542 221
Q ss_pred ccCCCCCC-cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 287 KKAPKVSF-KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 287 ~~~~~~~~-~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
.... ... ....|.+ ++.|.++.++++|++++++++.+.+... .+ ..++.++ ++.+.++++.+..-.
T Consensus 216 ~~~~-~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~-~~----~~t~~~~-----~~~~~aa~a~l~~~~ 282 (375)
T PRK04260 216 KLYA-FEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYG-SH----GSTFGGN-----KLSMAAASATLDIML 282 (375)
T ss_pred chhh-hHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCC-CC----CCCCCcC-----HHHHHHHHHHHHHHH
Confidence 1110 111 1125655 5679998778999999998876655321 11 1122222 233333333331111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEecC-CcHHHh-----hceeec-ccCCEEEEEEcCCCCHH
Q 011842 366 FQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFERP-QDEEFV-----RRWQLA-CQGNIAHVVVMPNVTID 434 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l~-~~~~~lRv~~~~~~T~e 434 (476)
..+.+++.+++.+++++.|.+ .+.....+.....+.+... ....+. +++.+. ...+.+|++++..+|.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~~t~~ 362 (375)
T PRK04260 283 TAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVEAARDKGLIVLTAGTNVIRLLPPLTLTKE 362 (375)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecCcHHHHHHHHHhCCCEEecCCCCEEEEcCCCccCHH
Confidence 234445555555555555544 3322222223344444432 222332 344443 33478999999999999
Q ss_pred HHHHHHHHHHHH
Q 011842 435 KLDDFLNELIEN 446 (476)
Q Consensus 435 did~~~~~l~~~ 446 (476)
||+++++.|+++
T Consensus 363 ~i~~~l~~l~~~ 374 (375)
T PRK04260 363 EIEQGIAILSEV 374 (375)
T ss_pred HHHHHHHHHHHh
Confidence 999999999765
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-14 Score=145.85 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch------HHHHHHHHcCCeEEEEeC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY------SVFKAARMYRMECVKVDC 213 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~------S~~~~~~~~G~~v~~v~~ 213 (476)
....+.+.+++++|.+. .+++++|+.|++.++.+ . .++++|++++..|. ++...++..|++++.+++
T Consensus 123 r~~~le~~lA~l~gae~----alvv~sg~aAi~l~l~~-l--~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~ 195 (454)
T TIGR00474 123 RYSHVEGLLCELTGAED----ALVVNNNAAAVLLALNT-L--AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGT 195 (454)
T ss_pred HHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHH-h--CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCC
Confidence 35667888999999874 67788999998887744 3 38999999988763 344566778999999976
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCc--cc--cccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc---
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTV--KG--AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV--- 286 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~--tG--~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~--- 286 (476)
+ +..|+++++++|.++|+ +|++.+.+++ .| .+.|+++|+++|++||+ ++++|.+.|. +.+..
T Consensus 196 ~--~~~~l~dle~aI~~~T~---lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~-----~vivD~~sG~-l~~~~~~g 264 (454)
T TIGR00474 196 T--NRTHLKDYEDAITENTA---LLLKVHTSNYRIVGFTEEVSIAELVALGREHGL-----PVMEDLGSGS-LVDLSRYG 264 (454)
T ss_pred C--CCCCHHHHHHhcCcCCE---EEEEEccCcccccCCCCCCCHHHHHHHHHHcCC-----eEEEECCCcc-cccchhcc
Confidence 4 34589999999988775 6666677665 46 47899999999999999 9999986432 21211
Q ss_pred -ccCCC-CCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhc
Q 011842 287 -KKAPK-VSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS 329 (476)
Q Consensus 287 -~~~~~-~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~ 329 (476)
.+.+. .+.. .++|++++|+|||+++|. .|++++++++++.+.
T Consensus 265 l~~~p~~~~~~~~GaDiv~fSg~K~LgGp~-~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 265 LPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ-AGIIVGKKELIERLK 309 (454)
T ss_pred CCCCcccccHhHcCCCEEEecCccccCCCe-EEEEEECHHHHHhhh
Confidence 11111 1222 349999999999999774 899999988776553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=134.91 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC---CcEEEecCC-CchHHHHHH---------HHcC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP---DGILYASRE-SHYSVFKAA---------RMYR 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p---~~~Vl~s~~-~H~S~~~~~---------~~~G 205 (476)
+...++.+++.++.+ ..+ ..+|+++|+|||=.|+..||.+.. +..|+.-.. -|.--.-+. +-.+
T Consensus 84 ~~~~~la~~L~~~s~-~~d--~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~ 160 (404)
T COG4992 84 EPQAELAEKLVELSP-FAD--RVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG 160 (404)
T ss_pred hHHHHHHHHHHhhCc-ccc--EEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence 555677888888886 222 399999999999999999998743 334544443 342111110 0011
Q ss_pred ---CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCc
Q 011842 206 ---MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGAL 278 (476)
Q Consensus 206 ---~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~ 278 (476)
-.++.+|.+ |+++|+++|++++. .|++.--...-|.+.+ ++++.++|++||+ +++.|++|
T Consensus 161 Pl~~g~~~vpfn-----Di~al~~ai~~~ta---AvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~-----LLI~DEVQ 227 (404)
T COG4992 161 PLLPGFRHVPFN-----DIEALEAAIDEDTA---AVIVEPIQGEGGVIPAPPEFLKALRELCDEHGA-----LLILDEVQ 227 (404)
T ss_pred CCCCCceecCCC-----CHHHHHHHhccCeE---EEEEecccCCCCCCCCCHHHHHHHHHHHHHhCe-----EEEEeccc
Confidence 135667766 99999999998764 6777655666677644 8999999999999 99999999
Q ss_pred ccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 279 FGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 279 ~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
.|.--.+.--...+.+. ..|+++.. |.|+++.++|.++++....+.+.. ..-+|.-+..+++..++.
T Consensus 228 tG~GRTGk~fA~e~~gV-~PDI~tla--K~LgGG~PigA~la~~~~~~~~~~----------G~HgSTfGGNpLacAv~~ 294 (404)
T COG4992 228 TGLGRTGKLFAYEHYGV-EPDILTLA--KALGGGFPIGAMLATEEIASAFTP----------GDHGSTFGGNPLACAVAL 294 (404)
T ss_pred cCCCccchHHHHHHhCC-CCCEEEee--ccccCCccceeeEEchhhhhcCCC----------CcccCCCCcCHHHHHHHH
Confidence 76422110000001111 16888866 999999999999998544333211 112233333456555555
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcC--CeE---eecCCeeE-EEEecC-CcHHHh-----hcee-ecccCCEEEE
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--ISA---MLNELSST-VVFERP-QDEEFV-----RRWQ-LACQGNIAHV 425 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~---~~~~~~~i-v~f~~~-~~~~~~-----~~~~-l~~~~~~lRv 425 (476)
+.+..-.-+...++..+..++|.++|+++. +.. +...+..+ +-|..+ ....+. +++. +....+.+|+
T Consensus 295 a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~~~ViR~ 374 (404)
T COG4992 295 AVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAGPNVIRF 374 (404)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHCCeEEecCCCCeEEe
Confidence 444333335566777788888988888852 111 11222211 222222 122222 2333 3556789999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.....+|+|+||..+++|+++.+.+.
T Consensus 375 ~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 375 LPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 98888999999999999999887654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=136.60 Aligned_cols=292 Identities=13% Similarity=0.077 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+++++.-.. ...+|+++|++||..|+.++|....+. +|.....-|.+...+..+.+-
T Consensus 86 ~~~~~la~~L~~~~~~~~--~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 163 (433)
T PRK08117 86 ESILKLAEELAEITPGGL--DCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL 163 (433)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence 556677788888773211 248899999999999999998653333 444555556554443322211
Q ss_pred --eEEEEeCCCCCc------------cCHHHHHHHHHc--CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCC
Q 011842 207 --ECVKVDCLISGE------------IDCADFKAKLLQ--NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFT 266 (476)
Q Consensus 207 --~v~~v~~~~~g~------------~D~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~ 266 (476)
.+..+|...... -|+++|++.+++ ....+..|++....++.|.+.| +++|.++|++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~- 242 (433)
T PRK08117 164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI- 242 (433)
T ss_pred CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC-
Confidence 123343321111 266778888764 2334566777656778888888 9999999999999
Q ss_pred CCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++++|++|.|+.. ..+....-.+.-..|.+ ++.|.++.++++|+++.++++.+.+... .+ ..++.+
T Consensus 243 ----llI~DEv~tG~gr-~G~~~~~~~~gv~pDi~--t~sK~lg~G~pigav~~~~~i~~~~~~~-~~----~~T~~~-- 308 (433)
T PRK08117 243 ----LLIFDEVQTGFGR-TGEWFAAQTFGVVPDIM--TIAKGIASGLPLSAVVASKELMEQWPLG-SH----GTTFGG-- 308 (433)
T ss_pred ----EEEEecchhccCc-cccchhHhhcCCCCCEe--ehhhhccCCCcceeEEEcHHHHhhccCC-CC----CCCCCc--
Confidence 9999999986422 11111000011125664 5569999889999999998877655321 11 112222
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC--CeEee-cCCe-eE--EEEecC----Cc---HHH---
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--ISAML-NELS-ST--VVFERP----QD---EEF--- 410 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~~~-~~~~-~i--v~f~~~----~~---~~~--- 410 (476)
.++.+.+++..+..-.-+...++..++.+++++.|++.. ...+. .+.. .+ +-|..+ .. ..+
T Consensus 309 ---np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~ 385 (433)
T PRK08117 309 ---NPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDK 385 (433)
T ss_pred ---CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHH
Confidence 233333333333211112456677777888888887642 11111 1111 12 223221 11 111
Q ss_pred --hhceee-cc--cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 411 --VRRWQL-AC--QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 411 --~~~~~l-~~--~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++..+ +. .++.+|++++..+|+++||++++.|.++.+++
T Consensus 386 l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 386 CLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred HHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 122222 21 24789999888999999999999999988765
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-13 Score=139.71 Aligned_cols=284 Identities=17% Similarity=0.094 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-HHcC------------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-RMYR------------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~~~G------------ 205 (476)
..+.++.+++++++.- .+ ..++|++|++||..|+..++....+..|+..+.+|......+ ...|
T Consensus 90 ~~~~~la~~L~~~~~~-~~--~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 166 (426)
T PRK00062 90 ELEVELAELVIELVPS-IE--MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP 166 (426)
T ss_pred HHHHHHHHHHHHhCCC-CC--EEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence 5555777777776631 12 388999999999999999887534455665555544432211 1111
Q ss_pred Ce-------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 206 ME-------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 206 ~~-------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
.. ...+|. -|+++|++.+.+...+...|++....++.|.+.| +++|.++|++||+ ++++
T Consensus 167 ~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~-----llI~ 236 (426)
T PRK00062 167 GVPEDFAKHTLTAPY-----NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGA-----LLIF 236 (426)
T ss_pred CCCcccccceEEcCC-----CCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 00 111221 2789999999764444557777766788899988 9999999999999 9999
Q ss_pred ecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHH
Q 011842 275 DGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 275 D~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l 352 (476)
|++|.|+.. ..... ..+.. ..|.+ ++.|.+++++++|++++++++.+.+... ..|.. .++.+.+ ....
T Consensus 237 DEv~~G~r~-g~~~~~~~~~~--~pDi~--~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~---~T~~~~p--~~~a 306 (426)
T PRK00062 237 DEVMTGFRV-ALGGAQGYYGV--TPDLT--TLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQA---GTLSGNP--LAMA 306 (426)
T ss_pred eechhcccc-CCccHHHHhCC--CcchH--hhhhHhhCCCcceeeeEHHHHHHhhccCCCceec---ccCcCCH--HHHH
Confidence 999986522 11110 00111 14644 4569888888999999988877766321 11211 1112221 1122
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEecCC------------c----HHH--
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFERPQ------------D----EEF-- 410 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~~~------------~----~~~-- 410 (476)
+..++++.+..+ +..++..++.++++++|++ .++..-......++.+...+ + ..+
T Consensus 307 aa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~ 383 (426)
T PRK00062 307 AGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFH 383 (426)
T ss_pred HHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHH
Confidence 223334443222 4667777777778777764 35433222222333322110 1 111
Q ss_pred ---hhceeecccC-CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 411 ---VRRWQLACQG-NIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 411 ---~~~~~l~~~~-~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+++.+...+ +.+++ +..+|++|||.+++.|+++.+++
T Consensus 384 ~l~~~Gv~v~~~~~~~~~~--~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 384 AMLDEGVYLAPSQFEAGFV--SAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred HHHHCCeEeecCCcCceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence 1233333222 34444 57889999999999999987653
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=143.51 Aligned_cols=334 Identities=13% Similarity=0.075 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHHHhcc--cccccCCCCcCCcchHHHH-HHHHHhhCCCCCCcccCcc----chhhHHHHHHHHHHHHHHc
Q 011842 80 YMAGVLARYRKTLMER--TKHHLGYPYNLDFDYGALA-QLQHFSINNLGDPFIESNY----GVHSRQFEVGVLDWFARLW 152 (476)
Q Consensus 80 ~~~~il~~~~~~~~~~--~~~~~g~p~~~~~~~~~l~-~~l~~~~n~~g~~~~~~~~----~~~~~~le~~~~~~la~l~ 152 (476)
+-.++++.+++....+ ...++|--.+..+.++.+. .++ .+.+.-..++|+ ..+.-+.--+...++++|.
T Consensus 47 sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~----~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt 122 (939)
T TIGR00461 47 KEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLL----ENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT 122 (939)
T ss_pred CHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHH----hCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 4568888888876554 2234553333222234443 333 222211111222 2244455556788999999
Q ss_pred CCCCCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCccCHHHHHHH
Q 011842 153 ELENNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGEIDCADFKAK 227 (476)
Q Consensus 153 g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~~D~~~Le~~ 227 (476)
|++..+ .-+..++|.+.-..+++.+. +.++..|++++..|+...... +..|++++.++ +++|++.
T Consensus 123 Gm~~aN--aSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--------~~~l~~~ 192 (939)
T TIGR00461 123 GLPVAN--ASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--------CSDIKKA 192 (939)
T ss_pred CCChhh--hhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc--------HHHHhhc
Confidence 998643 44555665543333333222 124478999999998866433 46788888873 4566655
Q ss_pred HHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCC
Q 011842 228 LLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHK 307 (476)
Q Consensus 228 l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK 307 (476)
+ ++ +.|+++. .+..|.+.|+++|+++++++|. +++++.-.-...+.. -.+.-++|+++.+.++
T Consensus 193 ~--~~---~~v~~q~-Pn~~G~ied~~~i~~~~h~~ga-----l~~~~ad~~al~ll~------~Pge~GaDi~vg~~q~ 255 (939)
T TIGR00461 193 V--DV---FGCLLQY-PATDGSILDYKQLIDALHSHKS-----LVSVAADLMALTLLT------PPGHYGADIVLGSSQR 255 (939)
T ss_pred C--CE---EEEEEEC-CCCCeEEecHHHHHHHHHHcCC-----EEEEEechHHhCCcC------CHHHcCCcEEeeCCCc
Confidence 5 22 3555554 4577999999999999999999 999965443322210 1112248999666666
Q ss_pred CCC----CCCCceeEEeehhhhhhhcCC-------c----cccC---CCCCcc--------cCCCCChhHHHHHHHHHHh
Q 011842 308 FVG----CPMPCGVQITRMEHINVLSSN-------V----EYLA---SRDATI--------MGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 308 ~l~----~p~~~G~l~~~~~~~~~l~~~-------~----~yl~---~~~~~~--------~~sr~~~~~l~~~~~l~~~ 361 (476)
|+. +++..|++.+++++.+.++.. . .|.. .....+ .|+-....++..+..+.++
T Consensus 256 fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~ 335 (939)
T TIGR00461 256 FGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH 335 (939)
T ss_pred cCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH
Confidence 554 134589999999887665321 0 1111 100001 1121111222233346788
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC--CcHHHh-----hceeeccc-CCEEEEEEcCCCCH
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP--QDEEFV-----RRWQLACQ-GNIAHVVVMPNVTI 433 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~--~~~~~~-----~~~~l~~~-~~~lRv~~~~~~T~ 433 (476)
|.+|++++.++.+.++.+|.+.|++.|+....++....+.++.+ +.+++. +++.+... .+.++++++..+|+
T Consensus 336 G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~ 415 (939)
T TIGR00461 336 GPKGLKNIARRIHSLTSILANGLENDPHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRAVDTTTVGIALDETTTK 415 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeeecCCCEEEEEeecCCCH
Confidence 99999999999999999999999999886655544556666654 323322 34444432 46799999999999
Q ss_pred HHHHHHHHHHH
Q 011842 434 DKLDDFLNELI 444 (476)
Q Consensus 434 edid~~~~~l~ 444 (476)
+||+.|++.+.
T Consensus 416 ~di~~l~~~~~ 426 (939)
T TIGR00461 416 ADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHhc
Confidence 99999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-13 Score=138.49 Aligned_cols=284 Identities=16% Similarity=0.095 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH-c--CC----------
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM-Y--RM---------- 206 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~-~--G~---------- 206 (476)
...++++.+++++... ...++|+|||+|+..|++++|....++.|++.+.+|......+.. . +.
T Consensus 89 ~~~~lae~l~~~~~~~---~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~ 165 (423)
T TIGR00713 89 AEILLAKEIISRVPSV---EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPG 165 (423)
T ss_pred HHHHHHHHHHHhCCcc---cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCC
Confidence 3345556666655432 248999999999999999998765567777777665554322211 1 11
Q ss_pred -------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEe
Q 011842 207 -------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 207 -------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
.+..+|. -|+++|++.+.+...++..|++....+.+|.+.| +++|.++|++||+ ++++|
T Consensus 166 ~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-----llI~D 235 (423)
T TIGR00713 166 VPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGS-----LLIFD 235 (423)
T ss_pred CCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCC-----EEEEE
Confidence 1122222 2899999999754344456666544445788866 7999999999999 99999
Q ss_pred cCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 276 GALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 276 ~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
++|.++.....-....+.. ..|.+ ++.|.++.++++|+++.++++.+.+.....+.. ..++.+ .++.+.
T Consensus 236 Ev~~g~r~g~~~~~~~~~~--~pDi~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~--~~T~~~-----~~~~~a 304 (423)
T TIGR00713 236 EVMTGFRVALGGAQEYFGV--EPDLT--TLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQ--AGTLSG-----NPLAMA 304 (423)
T ss_pred ccccccccCcchhHHHhCC--Ccchh--hhhhhhcCCCceeeeeEHHHHHHhhCcCCCeee--ccCCCC-----CHHHHH
Confidence 9997663210000001111 24644 467999888999999999888766642111110 011121 234444
Q ss_pred H---HHHHhChhcH-HHHHHHHHHHHHHHHHHHHhcCCeEee-cCCeeE-EEEecCC----------c-H---HHh----
Q 011842 356 Y---TLNRKGYKGF-QKEVQKCLRNAHYLKDRLLDAGISAML-NELSST-VVFERPQ----------D-E---EFV---- 411 (476)
Q Consensus 356 ~---~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~i-v~f~~~~----------~-~---~~~---- 411 (476)
+ +++.+...++ +...+....+.+.|.+.+++.++.... .....+ +.|..+. + . .+.
T Consensus 305 aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 384 (423)
T TIGR00713 305 AGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEML 384 (423)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHH
Confidence 4 4443322222 222233333444445555556654322 233222 2233211 1 1 111
Q ss_pred -hceeeccc-CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 -RRWQLACQ-GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 -~~~~l~~~-~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+++.+... .+.+|+ ++.+|+++|+.+++.|.++.++
T Consensus 385 ~~Gv~v~~~~~~~~~l--~~~~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 385 DKGVFLPPSQFEACFL--SAAHTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred HCCeEEecCCccceee--ECCCCHHHHHHHHHHHHHHHhh
Confidence 22223222 234554 4558999999999999988754
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-12 Score=129.05 Aligned_cols=285 Identities=18% Similarity=0.150 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEE-ecCCCchHHHHHHHHc------------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY-ASRESHYSVFKAARMY------------ 204 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl-~s~~~H~S~~~~~~~~------------ 204 (476)
+++|.++.+.+.++++.-. ..-|+++||||++.|++.||-.-.++.|+ +....|.+.....--.
T Consensus 92 te~Ei~~Aell~~~~p~~e---~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s 168 (432)
T COG0001 92 TELEVELAELLIERVPSIE---KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168 (432)
T ss_pred CHHHHHHHHHHHHhcCccc---EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCC
Confidence 5899999999999987631 27899999999999999999865555555 4444554433322211
Q ss_pred -CC------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 205 -RM------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 205 -G~------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
|+ .++.+|.| |++.|++++++.++....|++.-.-+..|.+.| +++|.++|++||+ +|+
T Consensus 169 ~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~-----lLI 238 (432)
T COG0001 169 PGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGA-----LLI 238 (432)
T ss_pred CCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCc-----EEE
Confidence 22 25566666 999999999998777777877766777788866 8899999999999 999
Q ss_pred EecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l 352 (476)
.|++..|+-.+. ...+.+-+.+ .|..+. -|.++.+.++|++..|.+.++.+.. .+.|. .||-++. ++
T Consensus 239 ~DEViTGFR~~~-gGaq~~~gi~-PDlttl--GKiIGGGlP~ga~gGr~eiM~~~~p~g~vyq-------aGT~sgn-pl 306 (432)
T COG0001 239 FDEVITGFRVAL-GGAQGYYGVE-PDLTTL--GKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQ-------AGTLSGN-PL 306 (432)
T ss_pred EecchhhcccCC-cccccccCcC-cchhhh--hhhhcCCcceeeeccHHHHHhhhCCCCCccc-------cCCCCCc-HH
Confidence 999987765541 1111122222 576664 4999999999999999998876633 23343 2233322 34
Q ss_pred HHHH---HHHHhCh-hcHHHHHHHHHHHHHHHHHHH----HhcCCeEeecCC-e-eEEEEecC--Cc---------HHHh
Q 011842 353 FLWY---TLNRKGY-KGFQKEVQKCLRNAHYLKDRL----LDAGISAMLNEL-S-STVVFERP--QD---------EEFV 411 (476)
Q Consensus 353 ~~~~---~l~~~g~-~g~~~~~~~~~~~a~~l~~~L----~~~g~~~~~~~~-~-~iv~f~~~--~~---------~~~~ 411 (476)
.+.+ +++.+.. ++ ..+++.+++++|.+.| .+.++....... + .-++|... .. +.+.
T Consensus 307 amaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~ 383 (432)
T COG0001 307 AMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFA 383 (432)
T ss_pred HHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHH
Confidence 4433 3343322 22 3444444555555544 455665544433 2 33444331 11 1111
Q ss_pred --------hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 412 --------RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 412 --------~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++..++... .=...++..+|++|||+++++++++.+.+.
T Consensus 384 ~~~~~~l~~GV~l~ps~-~ea~flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 384 KFFHHLLNRGVYLAPSQ-FEAGFLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred HHHHHHHhCCcccCCcc-ccceeeecccCHHHHHHHHHHHHHHHHHhh
Confidence 111222222 113567788999999999999999888765
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-12 Score=133.57 Aligned_cols=289 Identities=17% Similarity=0.104 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC---CcEEEecCCCchHH-HHHHHHcCC--------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP---DGILYASRESHYSV-FKAARMYRM-------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p---~~~Vl~s~~~H~S~-~~~~~~~G~-------- 206 (476)
+...++.+.+++++.-+. ...+|+++||+||-.|++.+|.... +..|++.+.+|... .-+....+-
T Consensus 124 ~~~~~lae~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~ 201 (459)
T PRK11522 124 PLRAMLAKTLAALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM 201 (459)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence 556667777877764322 2489999999999999999987532 33455555444333 222222221
Q ss_pred ----eEEEEeCCCCCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEe
Q 011842 207 ----ECVKVDCLISGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 207 ----~v~~v~~~~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
.+..+|.+ |.++|++.|+. .......|++....+..|.+.| ++++.++|++||+ ++++|
T Consensus 202 ~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~-----llI~D 271 (459)
T PRK11522 202 PLLPGFRHVPFG-----NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGA-----LLILD 271 (459)
T ss_pred CCCCCCcccCCC-----CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCC-----EEEec
Confidence 12223322 78889988864 2334556777666788888887 9999999999999 99999
Q ss_pred cCccccccccccc-CCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 276 GALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 276 ~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
+++.|+-- ..+. .....+. ..|.+++ .|.++.+ .++|.++++++..+.+... .+.. ..|+.+.+ .....
T Consensus 272 EV~tG~GR-tG~~~a~e~~gv-~PDivt~--gK~lggG~~Pigav~~~~~i~~~~~~~-~~~~--~~T~~gnp--~~~Aa 342 (459)
T PRK11522 272 EVQTGMGR-TGKMFACEHENV-QPDILCL--AKALGGGVMPIGATIATEEVFSVLFDN-PFLH--TTTFGGNP--LACAA 342 (459)
T ss_pred cceecCCc-cchhhhhhccCC-CCCEEEe--chhhhCCCccceeEEEcHHHHHHhccC-Cccc--CCCCCCCH--HHHHH
Confidence 99965311 1111 0001111 2687755 5998877 4899999998876655321 1211 12223222 11222
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC--Ce-Ee--ecCCeeEEEEecCCc---HHH-----hhceeecc--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--IS-AM--LNELSSTVVFERPQD---EEF-----VRRWQLAC-- 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~-~~--~~~~~~iv~f~~~~~---~~~-----~~~~~l~~-- 418 (476)
..++++.+.. ++..++..++.++|++.|++.. .. .+ +.....++.+...++ ..+ .+++.+..
T Consensus 343 ala~L~~i~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~ 419 (459)
T PRK11522 343 ALATINVLLE---QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL 419 (459)
T ss_pred HHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC
Confidence 3344554433 3467788888899999888752 21 11 111233444443322 111 23333432
Q ss_pred -cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 419 -QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 419 -~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.++.+|+.....+|++|||+++++|.++.+.+.
T Consensus 420 ~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~ 453 (459)
T PRK11522 420 NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMR 453 (459)
T ss_pred CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999887654
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9e-13 Score=129.04 Aligned_cols=293 Identities=13% Similarity=0.079 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-CCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G~~v~~v~ 212 (476)
|...+++++++.|.+.-|-. -++...++|+|+|.||-+.+-+..+ ||+..+++.+.|..+..-+++. |+++++|.
T Consensus 122 Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLad--pgdafLvPtPyY~gfdrdl~~rTgveivpv~ 199 (471)
T KOG0256|consen 122 GLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVEIVPVH 199 (471)
T ss_pred CchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcC--CCceeeecCCCCCcccccceeccCceEEEEE
Confidence 55689999999998877643 2234589999999999887777777 9999999999999998766665 88999999
Q ss_pred CCC--CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CLI--SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~~--~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
+.. +.++++++||+++.+. ..+..-|++++|+|+.|++-+ +..+.+++.++++ .+++|++|++.++.
T Consensus 200 c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kni-----HvI~DEIya~sVF~ 274 (471)
T KOG0256|consen 200 CSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNI-----HVISDEIYAGSVFD 274 (471)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcce-----EEEeehhhcccccC
Confidence 864 4689999999998753 334456888999999999865 6667778889999 99999999987764
Q ss_pred ccccCC------CCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 285 FVKKAP------KVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 285 ~~~~~~------~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
...-.+ ..... .++.++..-++-++..+.+.|+++..++. ..+..+...|- . - .+.-|..
T Consensus 275 ~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~-~--------v---Ss~tQ~~ 342 (471)
T KOG0256|consen 275 KSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG-L--------V---SSQTQYL 342 (471)
T ss_pred ccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc-C--------C---cHHHHHH
Confidence 332211 11111 22444444444466677899999998874 33333222221 1 0 1122222
Q ss_pred HHHHh-----ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC------Cc--H--HHhh------cee
Q 011842 357 TLNRK-----GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP------QD--E--EFVR------RWQ 415 (476)
Q Consensus 357 ~l~~~-----g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~------~~--~--~~~~------~~~ 415 (476)
....+ -..-+++...|+...-+|+.+.|++.|+..+ +..+++.+|..- .+ . ++.+ ++.
T Consensus 343 la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl-~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vkln 421 (471)
T KOG0256|consen 343 LASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKALGIPCL-KSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLN 421 (471)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcee-ecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccc
Confidence 22222 2223455666777778889999999998654 566666666421 11 1 1122 333
Q ss_pred ecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 416 LAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 416 l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++. ..+++|+++. +..++.++-.++.|++....
T Consensus 422 lSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~~ 461 (471)
T KOG0256|consen 422 LSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLDS 461 (471)
T ss_pred cCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 432 2589999874 34455555566666665553
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-13 Score=128.67 Aligned_cols=276 Identities=15% Similarity=0.123 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch----HHHHHHHHcCCeEEEEe
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY----SVFKAARMYRMECVKVD 212 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~----S~~~~~~~~G~~v~~v~ 212 (476)
...+|++ ++.|-|-- ..+.|++|..|..+|+..... +||.|+.+..-|. -+....+.+|++++.|.
T Consensus 64 ~~vlE~R----iAaLEGG~----aa~a~aSG~AA~~~ai~~la~--aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd 133 (426)
T COG2873 64 TDVLEER----IAALEGGV----AALAVASGQAAITYAILNLAG--AGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVD 133 (426)
T ss_pred HHHHHHH----HHHhhcch----hhhhhccchHHHHHHHHHhcc--CCCeeEeeccccCchHHHHHHHHHhcCcEEEEeC
Confidence 4456655 44444432 267788999999999988776 9999998876552 23456688899999998
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
.+ |++.++++|+++|+ +|.+..-.|+.+.+.|+++|+++|+++|+ .++||-..+..++. -
T Consensus 134 ~~-----d~~~~~~aI~~nTk---avf~EtigNP~~~v~Die~ia~iAh~~gv-----pliVDNT~atpyl~-------r 193 (426)
T COG2873 134 PD-----DPENFEAAIDENTK---AVFAETIGNPGLDVLDIEAIAEIAHRHGV-----PLIVDNTFATPYLC-------R 193 (426)
T ss_pred CC-----CHHHHHHHhCcccc---eEEEEeccCCCccccCHHHHHHHHHHcCC-----cEEEecCCCcceec-------c
Confidence 77 89999999999998 78888888999999999999999999999 99999998765442 1
Q ss_pred CCcccccEEEEcCCCCCCC-CCCceeEEeehhhhhhh-cCCccccCCCCCccc--------------------CCCCC--
Q 011842 293 SFKKPIGSVSVSGHKFVGC-PMPCGVQITRMEHINVL-SSNVEYLASRDATIM--------------------GSRNG-- 348 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~-p~~~G~l~~~~~~~~~l-~~~~~yl~~~~~~~~--------------------~sr~~-- 348 (476)
.+..++|+++-|..||+++ +..+|.+++.....+.. ....+.+...+.++. +-|..
T Consensus 194 P~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa 273 (426)
T COG2873 194 PIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGA 273 (426)
T ss_pred hhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhccc
Confidence 1223499999999999973 45566677654321111 111111111111111 01110
Q ss_pred -hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-C------------------CeeEEEEecCCc-
Q 011842 349 -HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-E------------------LSSTVVFERPQD- 407 (476)
Q Consensus 349 -~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~------------------~~~iv~f~~~~~- 407 (476)
..+...|. -..|.+.+.-+++|..+|+..+.+.|++++....++ | ...++.|...+.
T Consensus 274 ~lsPfnAfl--~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ 351 (426)
T COG2873 274 TLSPFNAFL--LLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGY 351 (426)
T ss_pred ccCcHHHHH--HHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChH
Confidence 11222332 234667788899999999999999999987543321 1 125777876654
Q ss_pred ---HHHhhceee----------------c-----------------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 408 ---EEFVRRWQL----------------A-----------------CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 408 ---~~~~~~~~l----------------~-----------------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+++.+.+ | -....+|+|+. .||++.++.+|+++.+
T Consensus 352 ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVG----IEd~~DiiaDl~qAl~ 424 (426)
T COG2873 352 EAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG----IEDIDDIIADLEQALE 424 (426)
T ss_pred HHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEec----cCCHHHHHHHHHHHHh
Confidence 223332221 0 01256888775 6888888988888654
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-12 Score=131.43 Aligned_cols=294 Identities=10% Similarity=0.022 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecC-CCchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASR-ESHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~-~~H~S~~~~~~~~G~----- 206 (476)
+...++.+.+.+++.-+. ...+|+++||+|+-.|+..+|... .+..|+.-+ .-|....-+....|.
T Consensus 95 ~~~~~la~~l~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 172 (460)
T PRK06541 95 PPAIELAERLAALAPGDL--NRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKA 172 (460)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhcc
Confidence 455567777777764322 248999999999999999998641 134454444 444333322222221
Q ss_pred -------eEEEEeCCCCC-----ccC--------HHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLISG-----EID--------CADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~~g-----~~D--------~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..+|..... .-| ++.|++.+... .+.+.+|++.-..++.|.+.| +++|.++|+
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~ 252 (460)
T PRK06541 173 PFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICD 252 (460)
T ss_pred ccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence 13333322100 012 36788888643 234455555444788898888 999999999
Q ss_pred HhCCCCCceEEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc-cccCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV-EYLASR 338 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~-~yl~~~ 338 (476)
+||+ ++++|++|.|+--..... ...+.. ..|.++ +.|.++.++ ++|++++++++.+.+.... .++.
T Consensus 253 ~~g~-----llI~DEV~tGfGR~G~~~a~~~~gv--~PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~-- 321 (460)
T PRK06541 253 RYDV-----LLVSDEVICAFGRLGEMFGCERFGY--VPDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLH-- 321 (460)
T ss_pred HcCC-----EEEEechhhCCCcCchhhhhhhcCC--CCCEEE--ecccccCCccceeEEEEcHHHHHHhhcCCCcccc--
Confidence 9999 999999995431111000 000111 268776 459998887 8999999998876654321 1111
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---Ce-EeecCCeeEEE--EecCC------
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---IS-AMLNELSSTVV--FERPQ------ 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~-~~~~~~~~iv~--f~~~~------ 406 (476)
..|+.+ .++...++++.+..-.-++..++..++.++|.+.|++.. .. .+...+ .+.. |..+.
T Consensus 322 ~~T~~g-----np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~G-l~~~ie~~~~~~~~~~~ 395 (460)
T PRK06541 322 GYTFGG-----HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDG-YFYGIELVKDKATKETF 395 (460)
T ss_pred CCCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcccccCC
Confidence 112222 234444444333211112456778888899999998752 21 111222 2222 22110
Q ss_pred -cH--------HH-----hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 -DE--------EF-----VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 -~~--------~~-----~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.. .+ .+++.+.. ..+.+|++....+|++|||.++++|+++.++.+
T Consensus 396 ~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 396 TDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred cchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 11 12233322 336889888888999999999999999988765
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-12 Score=130.97 Aligned_cols=295 Identities=13% Similarity=0.074 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCC--CchHHHHHHHHcCCe---
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRE--SHYSVFKAARMYRME--- 207 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~--~H~S~~~~~~~~G~~--- 207 (476)
.+.+.++.+.++++++-..+ ..+|+++||+||..|+.++|.. .++..++++.. -|.+...+..+.|..
T Consensus 97 ~~~~~~lae~L~~~~p~~~~--~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~ 174 (460)
T PRK12403 97 HPAVIELSELLFSLLPGHYS--HAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMH 174 (460)
T ss_pred CHHHHHHHHHHHHhCCCCcC--EEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCcccc
Confidence 35667778888888763222 3899999999999999999854 23334443333 376665555554432
Q ss_pred --------EEEEeCCCC------------CccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 208 --------CVKVDCLIS------------GEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 208 --------v~~v~~~~~------------g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
+..+|.... +..++++|++.+.+. .+....|++....+..|.+.| +++|.++|++
T Consensus 175 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~ 254 (460)
T PRK12403 175 EMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ 254 (460)
T ss_pred ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 233331100 011246677766532 234456666555777788877 9999999999
Q ss_pred hCCCCCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCC-ccccCCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSN-VEYLASR 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~-~~yl~~~ 338 (476)
||+ ++++|+++.|+--. .+. . ..+.. ..|++++ .|.++.++ ++|.+++++++.+.+... ..|+.+
T Consensus 255 ~g~-----lLI~DEV~tGfGRt-G~~~a~e~~gv--~PDiv~~--gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~- 323 (460)
T PRK12403 255 YDV-----LLCADEVIGGFGRT-GEWFAHEHFGF--EPDTLSI--AKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHG- 323 (460)
T ss_pred cCC-----EEEEeccccCCCcC-chhhhhhhcCC--CCCeEEE--cccccccccceEEEEECHHHHHHHhcCCCccccC-
Confidence 999 99999999764221 111 0 01111 2588874 59988785 899999998876655321 112111
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH-HHHHHHHHHHHh----cCCeE-eecCCee-EEEEecCC-----
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL-RNAHYLKDRLLD----AGISA-MLNELSS-TVVFERPQ----- 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~~~L~~----~g~~~-~~~~~~~-iv~f~~~~----- 406 (476)
.|+.+ .++...++++.+..-.-+..+++.. ++.++|++.|++ .+... +...+.. -+-|..+.
T Consensus 324 -~T~~g-----nPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~~~~~~ 397 (460)
T PRK12403 324 -LTYSG-----HPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFAEDKATRKR 397 (460)
T ss_pred -CCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEccCcccccc
Confidence 12222 2344444444332111123456664 677777777764 33221 1122221 12222111
Q ss_pred -cH--H---------HhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 -DE--E---------FVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 -~~--~---------~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.. . +.+++.+...++.+|++....+|++|||.++++|+++.+++.
T Consensus 398 ~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 398 FANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred ccchhHHHHHHHHHHHhCCEEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 10 1 112333333345566655555699999999999999988764
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-13 Score=136.57 Aligned_cols=302 Identities=19% Similarity=0.188 Sum_probs=208.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCCeE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEC 208 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~~v 208 (476)
.+..++-.++.++++...|++.- .+--++|..+-+.++++.|.. ....+.+++..+|...-..+.++|+++
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~D~~---s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magmkv 654 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGFDSF---SLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKV 654 (1001)
T ss_pred hhHHHHHHHHHHHhheeecccce---eecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEE
Confidence 35667888899999999999841 344567777777777776653 123578899999999999999999999
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc-CHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD-DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id-~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
+.|.++.+|.+|+.+|++..+++.+.-..+.+|.|+|. |.++ .+++++++.++||- -+..|||---...-..
T Consensus 655 vpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGG-----QVYlDGANMNAqVGlc- 727 (1001)
T KOG2040|consen 655 VPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGG-----QVYLDGANMNAQVGLC- 727 (1001)
T ss_pred EEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccccc-ccccccHHHHHHHHHhcCC-----EEEecCCCccceeccc-
Confidence 99999999999999999999988777778889988876 6665 69999999999999 9999999421111000
Q ss_pred cCCCCCCcccccEEEEcCCCCCCCCC-----CceeEEeehhhhhhhcCCcc--ccCCCCCc--------ccCCCCChhHH
Q 011842 288 KAPKVSFKKPIGSVSVSGHKFVGCPM-----PCGVQITRMEHINVLSSNVE--YLASRDAT--------IMGSRNGHAPI 352 (476)
Q Consensus 288 ~~~~~~~~~~~Dsi~~s~hK~l~~p~-----~~G~l~~~~~~~~~l~~~~~--yl~~~~~~--------~~~sr~~~~~l 352 (476)
-.+.-++|+.-.+.||.+..|- +.|-+.++..+..-++.++- -....+.. ..||... ..
T Consensus 728 ----~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~I--Lp 801 (1001)
T KOG2040|consen 728 ----RPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALI--LP 801 (1001)
T ss_pred ----CCccccccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCccee--eh
Confidence 0122348999999999887664 45556676655433332211 11111111 1222211 12
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-----eEEEEe---cC---CcHHHhhc-----eee
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-----STVVFE---RP---QDEEFVRR-----WQL 416 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-----~iv~f~---~~---~~~~~~~~-----~~l 416 (476)
-.|+.++.+|..|+++.-+-.+-+++|+.++|++.--.+...+.. +|+-.+ .. +..+..++ |+-
T Consensus 802 ISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHa 881 (1001)
T KOG2040|consen 802 ISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHA 881 (1001)
T ss_pred hHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCC
Confidence 378999999999999998888999999999999864333434332 121111 10 01122222 222
Q ss_pred cc----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 417 AC----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 417 ~~----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++ -.+.+.|-....-+++++|+|.++|..+++++.+
T Consensus 882 PTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ 921 (1001)
T KOG2040|consen 882 PTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEIAQ 921 (1001)
T ss_pred CccccccCCceEeccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 22 2367777777888999999999999999988755
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-12 Score=130.24 Aligned_cols=291 Identities=14% Similarity=0.075 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+.++++...+ ..+|+++||+|+-.|+..+|....+..|+.-..+ |.....+....|.
T Consensus 84 ~~~~~la~~L~~~~p~~~~--~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~ 161 (443)
T PRK08360 84 VEPLLLAEKLIEIAPGDNP--KVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGEL 161 (443)
T ss_pred HHHHHHHHHHHHhCCCCCC--EEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCC
Confidence 5566777888887754322 4899999999999999999876445556654444 4322222222221
Q ss_pred -eEEEEeCCCCCc------------cCHHHHHHHHHcC--CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCC
Q 011842 207 -ECVKVDCLISGE------------IDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQ 267 (476)
Q Consensus 207 -~v~~v~~~~~g~------------~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~ 267 (476)
.+..+|...... -+++.+++.++.. .+++..|++.-..+++|.+-| +++|.++|++||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~-- 239 (443)
T PRK08360 162 SDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGI-- 239 (443)
T ss_pred CCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC--
Confidence 133333321100 2345677777642 244566766644678887755 8999999999999
Q ss_pred CceEEEEecCcccccccccccCC--CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCC
Q 011842 268 DRFYIHCDGALFGLMMPFVKKAP--KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS 345 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~~~--~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~s 345 (476)
++++|++|.++.... .... .+.. ..|.+++ .|.++.++++|+++.+.++.+.+... .+ ..++.+.
T Consensus 240 ---llI~DEv~~g~gr~G-~~~a~~~~~~--~pDiitl--sK~l~~G~pigav~~~~~i~~~~~~~-~~----~~T~~~~ 306 (443)
T PRK08360 240 ---LLVVDEVQSGLGRTG-KWFAIEHFGV--EPDIITL--GKPLGGGLPISATIGRAEIMDSLPPL-AH----AFTLSGN 306 (443)
T ss_pred ---EEEEeccccCCCcCc-cchhhhhcCC--CCCEEEe--cccccCCceeEEEEEcHHHHhhhcCC-CC----CCCCCcC
Confidence 999999998643321 1110 1111 2577665 69998889999999998877665321 11 1122222
Q ss_pred CCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEE--EecCC-----cH----HH
Q 011842 346 RNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVV--FERPQ-----DE----EF 410 (476)
Q Consensus 346 r~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~--f~~~~-----~~----~~ 410 (476)
. .......++++.+..+ +..++..++.++|++.|++. +...-......++. |..+. +. .+
T Consensus 307 p--~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~ 381 (443)
T PRK08360 307 P--VASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKV 381 (443)
T ss_pred H--HHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHH
Confidence 1 1122233344443222 35677777888888887663 32211112222222 22111 11 11
Q ss_pred -----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 411 -----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 411 -----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+++.+. ..++.+|++....+|++|||.++++|+++.+.+.
T Consensus 382 ~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~ 428 (443)
T PRK08360 382 VWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVE 428 (443)
T ss_pred HHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2333333 3468899999999999999999999999988764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=128.16 Aligned_cols=285 Identities=15% Similarity=0.085 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------C-CcEEEecCCC-chHHHHHHHHcCCe---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------P-DGILYASRES-HYSVFKAARMYRME--- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p-~~~Vl~s~~~-H~S~~~~~~~~G~~--- 207 (476)
+...++.+.+.++.+.. ...+|+++||+|+-.|+..+|... + +..|+.-+.+ |....-+....|-.
T Consensus 82 ~~~~~la~~L~~~~~~~---~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~ 158 (408)
T PRK04612 82 APPLKLAEELVTASRFA---EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQ 158 (408)
T ss_pred HHHHHHHHHHHhhCCCC---CEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccc
Confidence 44456677777765432 248999999999999999998641 1 3345554444 43333333222211
Q ss_pred ---------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-cC----HHHHHHHHHHhCCCCCceEEE
Q 011842 208 ---------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-DD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 208 ---------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
+..+|.+ |++.|++.+..+ .+.+|++ .|...+|.+ .+ +++|.++|++||+ +++
T Consensus 159 ~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~--~~aavi~-eP~~~~gg~~~~~~~~l~~l~~l~~~~g~-----llI 225 (408)
T PRK04612 159 EGYEPLPGGFRYVDFN-----DVEALEAAMAGG--DVAAVML-EPIQGEGGVMPAAPGFLARVRALCDQHDA-----LLV 225 (408)
T ss_pred cCCCCCCCCceEcCCC-----CHHHHHHhhCCC--CEEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 1222222 788999888532 2344444 454444544 32 8999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
+|++|.++.... ............|.+++ .|.++.++++|+++.++++.+.+.... ...++.++ ++.
T Consensus 226 ~DEv~tg~gr~G-~~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~~~~~~~~~~~~-----~~~t~~~~-----p~~ 292 (408)
T PRK04612 226 LDEIQCGMGRTG-TLFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAGPKVAETMQFGA-----HGTTFGGN-----PLA 292 (408)
T ss_pred EeccccCCCcCC-chhhhhhcCCCCCEEEE--cchhcCCCceEEEEECHHHHhhhcCCC-----cCCCCCCC-----HHH
Confidence 999997643221 11000010112466655 598888899999999887765553211 11222222 233
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEec-CC----cHHH-----hhceee-cc
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFER-PQ----DEEF-----VRRWQL-AC 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~-~~----~~~~-----~~~~~l-~~ 418 (476)
+.++++.+..-.-++.+++..++.++|.++|++. ++.........++.+.. ++ ...+ .+++.+ +.
T Consensus 293 ~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~ 372 (408)
T PRK04612 293 AAVARVALRKLASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA 372 (408)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC
Confidence 3333333311111356777888888888888774 22211222222222221 11 1122 233334 33
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+.+|++.+..+|++|||.+++.|+++.+++.+
T Consensus 373 g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 373 GPDVLRFVPALNLTDAELADGLARLRLALADYVA 406 (408)
T ss_pred CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHhh
Confidence 4489999999999999999999999999877654
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-12 Score=135.01 Aligned_cols=282 Identities=15% Similarity=0.067 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH-HHHHH--c-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF-KAARM--Y----------- 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~-~~~~~--~----------- 204 (476)
+.+.++.+.+.+.+.. . ....|+++||+|+..|++.+|....+..|+.-+.+|..+. ..... .
T Consensus 139 ~~~~~lAe~l~~~~p~-~--~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~ 215 (474)
T PLN02482 139 LLENVLAEMVIDAVPS-V--EMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSP 215 (474)
T ss_pred HHHHHHHHHHHHhCCC-C--CEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCC
Confidence 6777888888887742 1 2489999999999999999997644555655444333322 11100 0
Q ss_pred CC------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 205 RM------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 205 G~------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
|. .+..+|.+ |+++|++.|.++......|++.-..++.|.+.| +++|.++|++||+ ++++
T Consensus 216 g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~-----lLI~ 285 (474)
T PLN02482 216 GVPKAATSATLTAPYN-----DLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGA-----LLVF 285 (474)
T ss_pred CCCCCCCCCeEEecCC-----ChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 11 12233333 789999999866555566766655777788766 5689999999999 9999
Q ss_pred ecCcccccccccccCCC-CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPK-VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~-~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|+++.|+-. ....... +.. ..|.+++ .|.++.++++|.++.++++++.+.....++. ..|+.+ .++.
T Consensus 286 DEV~tGfR~-g~~ga~~~~gv--~PDi~t~--gK~lggG~Pigav~g~~ei~~~~~~~~~~~~--~~T~~g-----npl~ 353 (474)
T PLN02482 286 DEVMTGFRI-AYGGAQEYFGI--TPDLTTL--GKVIGGGLPVGAYGGRREIMEMVAPAGPMYQ--AGTLSG-----NPLA 353 (474)
T ss_pred eccccCeec-CcchHhHHhCC--CCCEEEe--cchhhCCCceEEEEEcHHHHHhhccCCCccc--ccCcch-----hHHH
Confidence 999976522 1111100 111 2687665 5999888999999999888776642111111 112222 2333
Q ss_pred HH---HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeE--EEEecCC----------cHHHh---
Q 011842 354 LW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSST--VVFERPQ----------DEEFV--- 411 (476)
Q Consensus 354 ~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~i--v~f~~~~----------~~~~~--- 411 (476)
.. ++|+.+.. ++..++..++.++|+++|++.. ...+......+ +.|..+. +....
T Consensus 354 ~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~ 430 (474)
T PLN02482 354 MTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARF 430 (474)
T ss_pred HHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHH
Confidence 33 33444422 3467777888888888887742 22222222222 2232211 11111
Q ss_pred ------hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 ------RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 ------~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+++.+...+...+ .++..+|++|||+++++++++.++
T Consensus 431 ~~~l~~~Gv~~~~~~~~~~-~psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 431 HRGMLEEGVYLAPSQFEAG-FTSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHCCeEEeccCCCCC-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1111211110001 256778999999999999998764
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=128.15 Aligned_cols=280 Identities=17% Similarity=0.107 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC---CCcEEEecCCC-chHHHHHHHHcCC--------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF---PDGILYASRES-HYSVFKAARMYRM-------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~---p~~~Vl~s~~~-H~S~~~~~~~~G~-------- 206 (476)
+...++.+.+++++.-+. ...+|+++||+||-.|++.+|... .+..|++.+.+ |....-+....+-
T Consensus 117 ~~~~~lAe~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~ 194 (442)
T TIGR03372 117 PLRALLAKTLAALTPGKL--KYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM 194 (442)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC
Confidence 556677788888764322 248899999999999999998752 33455555544 4333222222111
Q ss_pred ----eEEEEeCCCCCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEe
Q 011842 207 ----ECVKVDCLISGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 207 ----~v~~v~~~~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
.+..+|.+ |.+.+++.+++ .......|++....+.-|.+.| +++|.++|++||+ ++++|
T Consensus 195 p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~-----llI~D 264 (442)
T TIGR03372 195 PLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGA-----LLILD 264 (442)
T ss_pred CCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCC-----EEEEe
Confidence 23444443 67888887753 2344566777666777888888 9999999999999 99999
Q ss_pred cCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 276 GALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 276 ~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+++.|+-- ..+. . ..+.. ..|++++ .|.++.+ .++|.+++++++.+.+... .+..+ .|+.+. ++
T Consensus 265 EV~tG~GR-tG~~~a~e~~gv--~PDivt~--gK~lg~G~~Pigavv~~~~i~~~~~~~-~~~~~--~T~~gn-----p~ 331 (442)
T TIGR03372 265 EVQTGMGR-TGKMFACEHEGV--QPDILCL--AKALGGGVMPIGATIATEAVFSVLFDN-PFLHT--TTFGGN-----PL 331 (442)
T ss_pred ecccCCCc-cccchhhhhcCC--CCCeeee--hhhhcCCcccceEEEecHHHHHhhhcc-Ccccc--CCCCCC-----HH
Confidence 99965311 1111 0 00111 2688774 5998877 5799999998876655311 12211 223322 33
Q ss_pred HHHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----C-CeEeecCCeeEEEEecCCc---HHH-----hhceee
Q 011842 353 FLWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----G-ISAMLNELSSTVVFERPQD---EEF-----VRRWQL 416 (476)
Q Consensus 353 ~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g-~~~~~~~~~~iv~f~~~~~---~~~-----~~~~~l 416 (476)
...+ +|+.+..+ +..++..++.++|++.|++. + ...-......++.+...++ ..+ .+++.+
T Consensus 332 ~~Aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~ 408 (442)
T TIGR03372 332 ACAAALATINELLEK---NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILV 408 (442)
T ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEE
Confidence 3333 34444322 34566677778888887764 2 1111112233333433222 112 233444
Q ss_pred cc---cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 417 AC---QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 417 ~~---~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.. .++.+|+.....+|++|||+++++|+++
T Consensus 409 ~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 409 AGTLNNAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred eecCCCCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 32 2478999999999999999999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-11 Score=131.01 Aligned_cols=297 Identities=13% Similarity=0.082 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-------CCcEEEecCCCchHHHHHHHHcCCe---
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-------PDGILYASRESHYSVFKAARMYRME--- 207 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-------p~~~Vl~s~~~H~S~~~~~~~~G~~--- 207 (476)
.+.+.++.+.|.+++.-. +....+|+++|++||..|+.++|... +..+|......|.+...+..+.|..
T Consensus 132 ~~~~~~lae~L~~~~~~~-~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~ 210 (504)
T PLN02760 132 TKPSLDLAKELLEMFTAR-KMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALH 210 (504)
T ss_pred cHHHHHHHHHHHhhcCCC-CCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhc
Confidence 356667777777765321 11247899999999999999997531 2345666666777765555544431
Q ss_pred ---------EEEEeCCCCC-------------ccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccC----HHHHHHHH
Q 011842 208 ---------CVKVDCLISG-------------EIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD----LDLVIQTL 260 (476)
Q Consensus 208 ---------v~~v~~~~~g-------------~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia 260 (476)
+..++..... ....++|++.+.. ..+.+..|++.......|.+.| +++|.++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 1122221100 1123567877753 2344556666555777788888 99999999
Q ss_pred HHhCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCcccc--C
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYL--A 336 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl--~ 336 (476)
++||+ ++++|+++.|+--.+.-.. ..+.+ ..|.++++ |.++.++ ++|.+++++++.+.+....... .
T Consensus 291 ~~~g~-----lLI~DEV~TGfGRtG~~~a~e~~gv--~PDivtlg--K~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~ 361 (504)
T PLN02760 291 KKYDI-----LFIADEVICAFGRLGTMFGCDKYNI--KPDLVSLA--KALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF 361 (504)
T ss_pred HHcCC-----EEEecchhhCCcccchhhHHHhcCC--CCcEEEec--ccccCCccccceEeecHHHHhhhhcccccccCc
Confidence 99999 9999999955411111000 01111 27876664 9888764 7889999988776553211100 0
Q ss_pred CCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCeeEEEEe--cCCc---
Q 011842 337 SRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELSSTVVFE--RPQD--- 407 (476)
Q Consensus 337 ~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~~iv~f~--~~~~--- 407 (476)
....|+.+. ++...++++.+..-.-++.+++..++.++|++.|++. ++.. +...+ .++.+. .+..
T Consensus 362 ~h~~T~~gn-----Pl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~~~ 435 (504)
T PLN02760 362 AHGFTYSGH-----PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTG-LILGTEFVDNKSPND 435 (504)
T ss_pred ccCCCCCCC-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCc-eEEEEEEecCCcccc
Confidence 011223332 3444444443321111356778888888898888764 2111 11111 222222 1110
Q ss_pred -----HH----H-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 -----EE----F-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 -----~~----~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.. + .+++.+...++.+|++....+|++|||.++++|+++.+.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 436 PFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred cccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 01 1 1233333345677887777799999999999999987765
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-11 Score=127.50 Aligned_cols=293 Identities=16% Similarity=0.026 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+...++.+.+.++..-+. ...+|+++||+|+-.|++.+|....+..|+.-+.+ |.....+....+-
T Consensus 95 ~~~~~lae~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~ 172 (451)
T PRK06062 95 DARSEAARLIAERAPGDL--SKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRA 172 (451)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCC
Confidence 556677777888764222 24899999999999999999975444556555544 4332233222221
Q ss_pred eEEEEeCCCCCc------cC-------HHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCC
Q 011842 207 ECVKVDCLISGE------ID-------CADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQD 268 (476)
Q Consensus 207 ~v~~v~~~~~g~------~D-------~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~ 268 (476)
.+..++...... -| +++|++.|+.. .+.+..|++.-....-|.+.| +++|.++|++||+
T Consensus 173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~--- 249 (451)
T PRK06062 173 GVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGI--- 249 (451)
T ss_pred CCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC---
Confidence 122222211111 12 67888888643 244556766655777788888 9999999999999
Q ss_pred ceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 269 RFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++++|+++.|+--...-.. ..+.+ ..|.+++ .|.++.++ ++|.++.++++.+.+... .|. ...|+.+.+
T Consensus 250 --lLI~DEV~tGfGRtG~~~a~~~~gv--~PDi~t~--gK~lggG~~Pigav~~~~~i~~~~~~~-~~~--~~~T~~gnp 320 (451)
T PRK06062 250 --VLIADEVMAGFGRTGKWFAIEHFGV--VPDLITF--AKGVNSGYVPLGGVAISEAIAATFADR-PYP--GGLTYSGHP 320 (451)
T ss_pred --EEEeeccccCCCcCcHHHHHHhcCC--CCCeeee--chhhhcCCcCcEEEEEcHHHHHHhccC-CCC--CCCCCCCCH
Confidence 9999999987421110000 01111 2687765 49998875 899999998877666321 111 112333321
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHH-HHHHHHHHhc----CCe-EeecCCe-eEEEEecCC-------c-----
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNA-HYLKDRLLDA----GIS-AMLNELS-STVVFERPQ-------D----- 407 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a-~~l~~~L~~~----g~~-~~~~~~~-~iv~f~~~~-------~----- 407 (476)
.......++|+.+..+. .+++..++. ++|.+.|++. +.. .+...+. .-+-|..+. .
T Consensus 321 --l~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~ 395 (451)
T PRK06062 321 --LACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLAPYGASS 395 (451)
T ss_pred --HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCcccchhh
Confidence 11222333444443333 455555554 4666666553 321 1112222 112222110 0
Q ss_pred ---HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 ---EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 ---~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+ .+++.+...++.+|++....+|++|||.++++|+++.+.+
T Consensus 396 ~~~~~~~~~l~~~Gvl~~~~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 396 AAMAAVKAACKERGLLPFVNGNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred HHHHHHHHHHHHCCcEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 011 1222232345778887777899999999999999988764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-11 Score=127.70 Aligned_cols=299 Identities=16% Similarity=0.104 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEe-cCCCchHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYA-SRESHYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~-s~~~H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+++++.-.. ....+|+++||+||..|+..+|....+..|+. ....|.....+..+.+.
T Consensus 85 ~~~~~lae~L~~~~p~~~-~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~ 163 (445)
T PRK08593 85 EPLVRLAKKLCELAPGDF-EKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPL 163 (445)
T ss_pred HHHHHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCC
Confidence 556677778888764221 12489999999999999999987533444544 44455444333333221
Q ss_pred --eEEEEeCCCC-----CccC-------HHHHHHHHHcC--CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCC
Q 011842 207 --ECVKVDCLIS-----GEID-------CADFKAKLLQN--KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFT 266 (476)
Q Consensus 207 --~v~~v~~~~~-----g~~D-------~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~ 266 (476)
.+..+|.... ...+ ++.+++.+... ......|++....+..|.+.| +++|.++|++||+
T Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~- 242 (445)
T PRK08593 164 LPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGI- 242 (445)
T ss_pred CCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC-
Confidence 2334443211 0111 24455555432 234556767655667787766 9999999999999
Q ss_pred CCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMG 344 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~ 344 (476)
++++|+++.|+-.. ... . ..+.. ..|++++ .|.++.++++|+++.++++.+.+... .+. .|+.+
T Consensus 243 ----llI~DEv~tg~Grt-G~~~a~~~~gv--~pDi~t~--gK~l~~G~p~gav~~~~~i~~~~~~~-~~~----~T~~~ 308 (445)
T PRK08593 243 ----LFAVDDIQQGLGRT-GKWSSISHFNI--TPDLMSF--GKSLAGGMPMSAIVGRKEIMESLEAP-AHL----FTTGA 308 (445)
T ss_pred ----EEEEechhhCCCcC-chHHHHHhcCC--CCCEeee--cccccCCcccEEEEEcHHHHhhhccC-CCC----CCCCC
Confidence 99999999654211 111 0 00111 2577754 58888778899999998887665321 111 12222
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeE-EEEecC-----CcH----H
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSST-VVFERP-----QDE----E 409 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~i-v~f~~~-----~~~----~ 409 (476)
.+ ....+..++++.+.. ++.+++..++.++|++.|++. +... +...+..+ +-|..+ .+. .
T Consensus 309 ~p--l~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~ 383 (445)
T PRK08593 309 NP--VSCAAALATIDMIED---ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALK 383 (445)
T ss_pred CH--HHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHH
Confidence 11 112223334444322 346677777888888888763 3211 11111111 112111 011 1
Q ss_pred H-----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011842 410 F-----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQP 458 (476)
Q Consensus 410 ~-----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~~~~ 458 (476)
+ .+++.+. ..++.+|+.....+|++|||.++++|.++.+.+.+..-.||
T Consensus 384 ~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~~~~~~ 438 (445)
T PRK08593 384 ICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGKLDQP 438 (445)
T ss_pred HHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhccccCCh
Confidence 1 1233332 24578999999999999999999999999998877666666
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-11 Score=125.78 Aligned_cols=290 Identities=16% Similarity=0.079 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~~G~----------- 206 (476)
+.+.++.+.+.+++.-+. ....+|+++||+|+..|++.+|....+..|+.-+.+|.. ..-+..+.+-
T Consensus 97 ~~~~~lAe~L~~~~p~~~-~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~ 175 (441)
T PRK05769 97 EPAVELAERLVEIAPGGF-EKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPL 175 (441)
T ss_pred HHHHHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCC
Confidence 556678888888774211 124899999999999999999976444556655544433 2222222221
Q ss_pred --eEEEEeCCCCCc-------------cCHHHHHHHH-Hc--CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhC
Q 011842 207 --ECVKVDCLISGE-------------IDCADFKAKL-LQ--NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESG 264 (476)
Q Consensus 207 --~v~~v~~~~~g~-------------~D~~~Le~~l-~~--~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g 264 (476)
.+..+|...... -+++.+++.+ ++ .......|++.-..+..|.+.| +++|.++|++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g 255 (441)
T PRK05769 176 MPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYG 255 (441)
T ss_pred CCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 233344321100 1234466633 32 2344566666655777888888 999999999999
Q ss_pred CCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccC
Q 011842 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMG 344 (476)
Q Consensus 265 ~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~ 344 (476)
+ ++++|+++.|+... ..........-..|.++++ |.++.++++|+++.+++....+.. . ...++.+
T Consensus 256 ~-----lli~DEv~tG~gr~-G~~~a~~~~gv~pDivt~~--K~l~~G~p~gav~~~~~i~~~~~~---~---~~~T~~g 321 (441)
T PRK05769 256 I-----LLIDDEVQTGMGRT-GKMFAIEHFGVEPDIITLA--KAIAGGLPLGAVIGRAELMFLPPG---S---HANTFGG 321 (441)
T ss_pred C-----EEEEechhhCCCcc-cceehhhccCCCCCEEEEc--ccccCCcccEEEEEehhhhhcCCC---C---CCCCCCc
Confidence 9 99999999864221 1110000111125887754 888878999999998876532211 1 1122322
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEE--EecCC---cHH----H-
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVV--FERPQ---DEE----F- 410 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~--f~~~~---~~~----~- 410 (476)
.++.+.++++.+..-.- +..++..++.++|++.|++. +...-......++. |..+. +.. +
T Consensus 322 -----~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~ 395 (441)
T PRK05769 322 -----NPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVL 395 (441)
T ss_pred -----CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHH
Confidence 23444444444321111 66778888889999988764 22111111122222 22110 111 1
Q ss_pred ----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 ----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 ----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+. ...+.+|++....+|++|||.++++|+++.+.
T Consensus 396 ~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 396 YEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2333333 33478899888889999999999999998764
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-12 Score=130.78 Aligned_cols=288 Identities=14% Similarity=0.099 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCe-------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRME------- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~------- 207 (476)
+.+.++.+.+.++++... ....|+++||+|+..|++.+|....+..|+.-..+|..+. .+....+-.
T Consensus 93 ~~~~~la~~L~~~~~~~~--~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~ 170 (433)
T PRK00615 93 EQEILFAEELFSYLGLED--HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHL 170 (433)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCC
Confidence 556677788888775432 2489999999999999999997544455554444333321 111111100
Q ss_pred ---------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 208 ---------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 208 ---------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
...++. -|+++|++.+.+...++..|++....++.|.+.| +++|.++|++||+ ++++
T Consensus 171 ~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~-----llI~ 240 (433)
T PRK00615 171 VDTDLAHPLTLSLPY-----NDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGS-----LSIM 240 (433)
T ss_pred CCCCCCCCCeEeCCC-----CCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 011111 2789999999765555567777666778888877 4599999999999 9999
Q ss_pred ecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHH
Q 011842 275 DGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l 352 (476)
|+++.|+ .-...... .+.. ..|.+++ .|.++.+.++|++++++++.+.+.... .|.. .|+.+ .++
T Consensus 241 DEv~tG~-R~G~~ga~~~~gv--~PDi~~~--gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~---~T~~g-----~p~ 307 (433)
T PRK00615 241 DEVVTGF-RVAQGGAAAIYHV--KPDITVY--GKILGGGLPAAAVVAHKSIMDHLAPEGTIFQA---GTLSG-----NPL 307 (433)
T ss_pred Ecccccc-cccHhHHHHhcCC--CCCeEEE--cccccCCcceeeeeecHHHHhhhcCCCCcccC---CCCcc-----cHH
Confidence 9999654 11111100 1111 2677764 698887788999999998876653211 1111 11121 233
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEe-ecCCe-eEEEEecCC----------cHHHhhceee
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAM-LNELS-STVVFERPQ----------DEEFVRRWQL 416 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~-~~~~~-~iv~f~~~~----------~~~~~~~~~l 416 (476)
...++++.+..-.-++.+++..++.++|.++|++ .|+... ...+. .-+.|.... +.+....+..
T Consensus 308 ~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (433)
T PRK00615 308 AMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQ 387 (433)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHH
Confidence 3333333332111123566777777777666654 344221 11111 112232111 1111111110
Q ss_pred c--ccCCEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 417 A--CQGNIA------HVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 417 ~--~~~~~l------Rv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
. ..+-.+ ...++..+|++|||+++++++++.+..+
T Consensus 388 ~l~~~Gv~~~~~~~~~~~ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 388 SAFSKGVYLSPSPFEASFLSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHCCeeecCccccccceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 0 111111 1257888899999999999999887654
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-12 Score=126.46 Aligned_cols=265 Identities=15% Similarity=0.214 Sum_probs=184.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~g~ 218 (476)
.+.+.++.|-|.+. ++.+++|..|+..++.+... +||.|+.++..|..-. +..+.+|+++..++..
T Consensus 67 ~lE~~~a~LEg~~~----~~afsSGmaAI~~~~l~ll~--~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~---- 136 (396)
T COG0626 67 ALEEALAELEGGED----AFAFSSGMAAISTALLALLK--AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG---- 136 (396)
T ss_pred HHHHHHHHhhCCCc----EEEecCcHHHHHHHHHHhcC--CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC----
Confidence 33444666666653 89999999999998888776 8999999998775533 4445568899888754
Q ss_pred cCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 219 IDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 219 ~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|.+.+++++.+ +++ +|.+..|+|++..+.||++|+++|+++|+ .++||..++..++. -....+
T Consensus 137 -~~~~~~~~~~~~~tk---~v~lEtPsNP~l~v~DI~~i~~~A~~~g~-----~vvVDNTfatP~~q-------~PL~~G 200 (396)
T COG0626 137 -DDEALEAAIKEPNTK---LVFLETPSNPLLEVPDIPAIARLAKAYGA-----LVVVDNTFATPVLQ-------RPLELG 200 (396)
T ss_pred -ChHHHHHHhcccCce---EEEEeCCCCcccccccHHHHHHHHHhcCC-----EEEEECCccccccc-------ChhhcC
Confidence 56677777764 665 89999999999999999999999999999 99999998876553 111124
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeehhhh-hhhc-CCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRMEHI-NVLS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~~~~-~~l~-~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
+|++.-|..|++++--. .|+++.+++.+ +.+. ....++ |+- ..+...|..++ |.+.+.-++++.
T Consensus 201 aDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~--------G~~--l~p~dA~l~lR--GlkTL~~Rm~~~ 268 (396)
T COG0626 201 ADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANT--------GAV--LSPFDAWLLLR--GLRTLALRMERH 268 (396)
T ss_pred CCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhc--------CCC--CCHHHHHHHHh--ccchHHHHHHHH
Confidence 99999999999985432 45566566543 2221 111111 111 23566676665 567788899999
Q ss_pred HHHHHHHHHHHHhcCCeE-eecC-----------------CeeEEEEecCCc---HHHhhceee----------------
Q 011842 374 LRNAHYLKDRLLDAGISA-MLNE-----------------LSSTVVFERPQD---EEFVRRWQL---------------- 416 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~-~~~~-----------------~~~iv~f~~~~~---~~~~~~~~l---------------- 416 (476)
.++|..+.+.|++.+... +..| ...+++|..... ..|.+.+.+
T Consensus 269 ~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgveSLi~~ 348 (396)
T COG0626 269 NENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISH 348 (396)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCccccccc
Confidence 999999999999976543 3333 246788887652 234443332
Q ss_pred c-----------------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 417 A-----------------CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 417 ~-----------------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+ -.++.+|+++. -||++.++++|+++.+.
T Consensus 349 pa~~th~~~~~~~r~~~Gi~~~LvRlSVG----lEd~eDLi~Dl~~Al~~ 394 (396)
T COG0626 349 PATMTHASIPLEERAKAGITDGLVRLSVG----LEDVEDLIADLEQALAK 394 (396)
T ss_pred ccccCcccCCHhHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHHh
Confidence 0 01356888876 56677777777766554
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-11 Score=125.94 Aligned_cols=293 Identities=13% Similarity=0.095 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+...++.+.+++++.-.. ...+|+++||+|+-.|+..+|... .+..|+.-..+ |....-+....|.
T Consensus 92 ~~~~~la~~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~ 169 (445)
T PRK09221 92 PLAFELAERLAELAPGGL--DHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRK 169 (445)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhh
Confidence 445567777888764222 238999999999999999998641 13345544444 4322222211111
Q ss_pred -------eEEEEeCCC---C--C--------ccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLI---S--G--------EIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~---~--g--------~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..+|... . . .-..++|++.++... +....|++....+..|.+.| +++|.++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~ 249 (445)
T PRK09221 170 MFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICD 249 (445)
T ss_pred ccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHH
Confidence 123333211 0 0 012467888887542 45567777666788899888 999999999
Q ss_pred HhCCCCCceEEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccC--C
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLA--S 337 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~--~ 337 (476)
+||+ ++++|+++.|+--.+... ...+.. ..|.++++ |.++.+ .++|.++++++..+.+.....+.. .
T Consensus 250 ~~g~-----llI~DEV~tG~GRtG~~~~~~~~gv--~PDi~~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~ 320 (445)
T PRK09221 250 KHGI-----LLIFDEVITGFGRLGAAFAAERFGV--TPDIITFA--KGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFF 320 (445)
T ss_pred HcCC-----EEEEeehhhCCCcCchhhHHHhcCC--CCCEEEec--cccccCcccceeeEEcHHHHHhhccCcccccccc
Confidence 9999 999999996532110000 000111 25877654 888755 468889999887766543222110 0
Q ss_pred CCCcccCCCCChhHHHHH---HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEee---cCCe-eEEEEecC---C
Q 011842 338 RDATIMGSRNGHAPIFLW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAML---NELS-STVVFERP---Q 406 (476)
Q Consensus 338 ~~~~~~~sr~~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~---~~~~-~iv~f~~~---~ 406 (476)
...|+.+ .++... ++++.+..+ +.+++..++.++|++.|++. +...+. ..+. .-+-|..+ .
T Consensus 321 ~~~T~~~-----~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~ 392 (445)
T PRK09221 321 HGYTYSA-----HPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAP 392 (445)
T ss_pred cccCCCc-----CHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccc
Confidence 1122222 223333 344444222 45778888999999988875 211111 1111 11222211 1
Q ss_pred c---HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 407 D---EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 407 ~---~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. ..+ .+++.+...++.+|++....+|++|||+++++|+++.+++
T Consensus 393 ~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 393 GARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred cchHHHHHHHHHHCCeEEeecCCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 1 111 2344454556789999888899999999999999987653
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=127.81 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCC------------
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRM------------ 206 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~------------ 206 (476)
...++.+++.++.+.+.. ...+|+++|++|+-.|+..++....+ .+|.++..-|.....+....+-
T Consensus 85 ~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~ 163 (425)
T PRK08088 85 PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMP 163 (425)
T ss_pred HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCC
Confidence 344777888887764321 24789999999999999998875333 3445544344433322222110
Q ss_pred -eEEE--EeCCCCCccC----HHHHHHHHHc--CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 -ECVK--VDCLISGEID----CADFKAKLLQ--NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 -~v~~--v~~~~~g~~D----~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+.. +|.+.++ ++ ++.|++.+.. ..+.+..|++.......|.+-+ +++|.++|++||+ +++
T Consensus 164 ~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~-----~lI 237 (425)
T PRK08088 164 GHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGI-----MLI 237 (425)
T ss_pred CCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 0111 2222221 22 5668888863 2344556666555555566655 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+|++|+++.... ... .++... ..|. .++.|.++.++++|+++.+.++++.+.... + ..++.+ .++
T Consensus 238 ~Dev~~g~g~~g-~~~-~~~~~~~~pdi--~s~sK~l~~G~rig~v~~~~~~~~~~~~~~-~----~~t~~~-----~~~ 303 (425)
T PRK08088 238 ADEVQTGAGRTG-TLF-AMEQMGVAADL--TTFAKSIAGGFPLAGVTGRAEVMDAIAPGG-L----GGTYAG-----NPI 303 (425)
T ss_pred EeccccCCCcCc-chh-HHhhcCCCCCE--EEEeccccCCCcceeeEecHHHHhhcCCCC-C----CCCCCc-----CHH
Confidence 999998643221 110 011111 1554 455699988899999999988876653221 1 111221 234
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEec--------CCc---HHHh-----h
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFER--------PQD---EEFV-----R 412 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~--------~~~---~~~~-----~ 412 (476)
.+.+++..+..-..++++++.+++.+++.+.|++ .+...........+.+.. |+. ..+. +
T Consensus 304 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~ 383 (425)
T PRK08088 304 ACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDK 383 (425)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhC
Confidence 4444444442222344555555556666665544 343211112122233332 111 1111 2
Q ss_pred ceee-ccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 413 RWQL-ACQ--GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 ~~~l-~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++.+ ++. .+.+|+++...+|+++|+..++.|.++.+.
T Consensus 384 Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 384 GLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHh
Confidence 2222 222 478999998899999999999999988764
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=128.89 Aligned_cols=280 Identities=18% Similarity=0.155 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+.+++.- . ...+|+++||+|+..|++.+|....+..|+.-+.+ |....-+....|.
T Consensus 93 ~~~~~la~~l~~~~p~-~--~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PRK12389 93 ELEIEFAKMLKEAIPS-L--EKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 169 (428)
T ss_pred HHHHHHHHHHHHhCCC-C--cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence 5556777777776641 1 24899999999999999999986445556554444 4332222222221
Q ss_pred --------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 207 --------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
++..+|.+ |++.|++.+++..+.+..|++.-..+..|.+.| +++|.++|++||+ ++++
T Consensus 170 ~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~-----llI~ 239 (428)
T PRK12389 170 GVPKSIAQEVITVPFN-----DIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGA-----LVIY 239 (428)
T ss_pred CCCCcccCceEEcCCC-----CHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 12222322 789999999765555567777656777888888 9999999999999 9999
Q ss_pred ecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHH
Q 011842 275 DGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l 352 (476)
|+++.|+-. ...... .+.. ..|.+++ .|.++.++++|.++.++++.+.+... ..+. ..|+.+. ++
T Consensus 240 DEV~tG~Rt-~~~~a~~~~gv--~PDivt~--gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~---~~T~~gn-----pl 306 (428)
T PRK12389 240 DEVITAFRF-MYGGAQDLLGV--EPDLTAL--GKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQ---AGTMAGN-----PA 306 (428)
T ss_pred Ecccccccc-CcchhhHHhCC--CCCeeee--chhhcCCCceeEEeEHHHHHhhhccCCCccc---ccCCccC-----HH
Confidence 999987621 111000 0111 2687655 59988888999999998877665321 1111 1122222 33
Q ss_pred HHHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEee-c-CCeeEEEEecCC----------cHH----
Q 011842 353 FLWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAML-N-ELSSTVVFERPQ----------DEE---- 409 (476)
Q Consensus 353 ~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~-~-~~~~iv~f~~~~----------~~~---- 409 (476)
...+ +++.+..+ +..++..++.++|++.|++ .++..-. . ....-+.|.... +..
T Consensus 307 ~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~ 383 (428)
T PRK12389 307 SMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGK 383 (428)
T ss_pred HHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHH
Confidence 3333 44444322 4667778888888888876 3432211 1 111122232111 111
Q ss_pred Hh-----hceeecccC-CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 410 FV-----RRWQLACQG-NIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 410 ~~-----~~~~l~~~~-~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+. +++.+...+ .. +.+...+|++|||.++++++++.++
T Consensus 384 ~~~~l~~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 384 FFKLMLNQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHHHHHh
Confidence 11 122221111 11 3456778999999999999988753
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-11 Score=124.17 Aligned_cols=294 Identities=13% Similarity=0.044 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCchHHH-HHHHHcC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVF-KAARMYR------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~S~~-~~~~~~G------ 205 (476)
+.+.++.+.+++++.-.. ...+|+++||+|+-.|+..+|... .+..|+.-..+|.... -+..+.|
T Consensus 89 ~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~ 166 (442)
T PRK13360 89 PKAFELANRIAEIAPGGL--NHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRK 166 (442)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhh
Confidence 555677788888763211 238999999999999999998641 1345665555443322 1211111
Q ss_pred ------CeEEEEeCCCC-----C--------ccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 206 ------MECVKVDCLIS-----G--------EIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 206 ------~~v~~v~~~~~-----g--------~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
-.+..+|.... . .-..++|++.+... .+.+..|++....++.|.+.| +++|.++|+
T Consensus 167 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~ 246 (442)
T PRK13360 167 AFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICD 246 (442)
T ss_pred ccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 12333443211 0 01256888888643 244556777666778898888 999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc----ccc
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV----EYL 335 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~----~yl 335 (476)
+||+ ++++|+++.|+-..+.... ..+.. ..|.+++ .|.++.+ .++|.++++++..+.+.... .++
T Consensus 247 ~~g~-----llI~DEv~tG~GrtG~~~a~~~~gv--~PDivt~--gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~ 317 (442)
T PRK13360 247 KHGI-----LLIFDEVITGFGRLGAPFAAQYFGV--TPDLLTC--AKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFF 317 (442)
T ss_pred HcCC-----EEEEechhhCCCCCccchhhhhcCC--CCceeee--eeccccCccceEEEEEcHHHHHHhhcCCccccccc
Confidence 9999 9999999955311110000 01111 2687765 5988766 57889999988776653221 121
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEe---ecCCe-eEEEEec--C-Cc
Q 011842 336 ASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAM---LNELS-STVVFER--P-QD 407 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~---~~~~~-~iv~f~~--~-~~ 407 (476)
. ..|+.+.. .......++++.+..+ ...++..++.++|++.|++.. ...+ ...+. ..+-|.. . ..
T Consensus 318 ~--~~T~~g~p--l~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~ 390 (442)
T PRK13360 318 H--GYTYSGHP--LACAAALATLDLYERE---GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPG 390 (442)
T ss_pred c--CCCCCCCH--HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcc
Confidence 1 12333221 1222233344444333 356677778888888887643 1111 11111 1112221 1 11
Q ss_pred ---HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 ---EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 ---~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+ .+++.+...++.+|++....+|++|||.++++|.++.+++
T Consensus 391 ~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 391 KRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred hhHHHHHHHHHHCCcEEEecCCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 111 2344444456789999888999999999999999988654
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-11 Score=117.94 Aligned_cols=295 Identities=16% Similarity=0.165 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEc--CCchhHHHHHHHHHHhhCCCcEEE---ecCCCchHHH---HHHHHcCC--
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYIT--NCGTEGNLHGILVGREVFPDGILY---ASRESHYSVF---KAARMYRM-- 206 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t--~ggt~An~~al~aa~~~~p~~~Vl---~s~~~H~S~~---~~~~~~G~-- 206 (476)
..++|.-+.+...+.|+++++ .||+-+ -+||-||+.+-.+... |++.|. .+.-.|.|.- ..-++...
T Consensus 84 ID~iE~LCq~RALeaF~ldp~-kWGVNVQp~SGSPANfavYtall~--Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~Si 160 (477)
T KOG2467|consen 84 IDQIELLCQKRALEAFGLDPE-KWGVNVQPYSGSPANFAVYTALLK--PHERIMGLDLPSGGHLSHGYQTPTKKISATSI 160 (477)
T ss_pred HHHHHHHHHHHHHHHhCCCHH-HCceeeccCCCCchhhHHHhhhcC--CCCeeeeccCCCCCccccccccCCceeeeeee
Confidence 356777778888889999964 688754 5899999998888776 888776 3444554421 11111111
Q ss_pred --eEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcc-ccc
Q 011842 207 --ECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALF-GLM 282 (476)
Q Consensus 207 --~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~-g~~ 282 (476)
+..++.+| .+|-||.|.||+.... -+|.++++ |++..--.-|..++.+||.+.|+ ++++|.||= |.+
T Consensus 161 yFeSmPYkv~~~TG~IDYD~Le~~A~~--frPk~iia--G~SaY~R~~DYaR~R~Iad~~gA-----~Lm~DMAHISgLV 231 (477)
T KOG2467|consen 161 YFESMPYKVDPSTGYIDYDKLEKTATL--FRPKLIIA--GTSAYSRLIDYARFRKIADKVGA-----YLMADMAHISGLV 231 (477)
T ss_pred ecccCceeeCCCCCceehHHHHHHHHh--cCCcEEEe--ccccchhhccHHHHHHHHHhcCc-----eeehhhhhHHHHH
Confidence 22334556 4699999999987543 34557666 66666667789999999999999 999999984 333
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhh---cCCccccCCC------CCcccCCCCChhHHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL---SSNVEYLASR------DATIMGSRNGHAPIF 353 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l---~~~~~yl~~~------~~~~~~sr~~~~~l~ 353 (476)
..... .+.| +.+|+++.+.||.|-+| +.|+++.|......- .....|=... =+.++|++..+...+
T Consensus 232 AA~vi-psPF---ey~DiVTTTTHKsLRGP-Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaa 306 (477)
T KOG2467|consen 232 AAGVI-PSPF---EYCDIVTTTTHKSLRGP-RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAA 306 (477)
T ss_pred hcccC-CCcc---cccceeeccccccccCC-cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHH
Confidence 32111 1223 34899999999999965 456777666431110 1111221100 135677877777788
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCC---c----HHHhhceeecc-------
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQ---D----EEFVRRWQLAC------- 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~---~----~~~~~~~~l~~------- 418 (476)
++.+|+....-.|.+..++...|++.|.+.|.+.|...+.... ...|.+...+ + +...+...+.+
T Consensus 307 lAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpG 386 (477)
T KOG2467|consen 307 LAVALKQAMTPEFKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPG 386 (477)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCC
Confidence 8889998888889999999999999999999999987765433 3455554321 1 22223233322
Q ss_pred -----cCCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 419 -----QGNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 -----~~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|+.. +...-++|++++.+-|.+..+
T Consensus 387 D~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 387 DKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred CccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 135678754 444567888888888776543
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-11 Score=126.27 Aligned_cols=291 Identities=14% Similarity=0.050 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-Cc-EEEecCCCchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DG-ILYASRESHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~-~Vl~s~~~H~S~~~~~~~~G~----- 206 (476)
....++.++++++++-+- ...+|+++||+|+-.|+..++... + +. +|..+...|....-+..+.+-
T Consensus 88 ~~~~~la~~l~~~~~~~~--~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~ 165 (427)
T TIGR00508 88 KPAIELCQKLVKMTPNAL--DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMH 165 (427)
T ss_pred HHHHHHHHHHHhhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccc
Confidence 334567777777764322 248999999999999999988642 1 23 444444455433322222221
Q ss_pred --------eEEEEeCCCC------CccCHHHHHHHHHcCCCCcEEEEEeeCCCccc-----cccCHHHHHHHHHHhCCCC
Q 011842 207 --------ECVKVDCLIS------GEIDCADFKAKLLQNKDKPAIINVNIGTTVKG-----AVDDLDLVIQTLEESGFTQ 267 (476)
Q Consensus 207 --------~v~~v~~~~~------g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG-----~id~l~~I~~ia~~~g~~~ 267 (476)
....++.... ..-|++++++.+.+..+....|++.......| ..+.+++|.++|++||+
T Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~-- 243 (427)
T TIGR00508 166 SLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDI-- 243 (427)
T ss_pred ccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC--
Confidence 1112221100 11267788888875443444555543234444 34679999999999999
Q ss_pred CceEEEEecCccccccccccc-CC-CCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc--cccCCCCCcc
Q 011842 268 DRFYIHCDGALFGLMMPFVKK-AP-KVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV--EYLASRDATI 342 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~-~~-~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~--~yl~~~~~~~ 342 (476)
++++|++|.|+.. ..+. .. .++. ..|++++ .|.++.++ .++.++.++++.+.+.... .|.. ..|+
T Consensus 244 ---llI~DEv~tG~Gr-~G~~~~~~~~~v--~pDi~~~--gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~--~~T~ 313 (427)
T TIGR00508 244 ---LLIADEIATGFGR-TGKLFACEHAGV--VPDILCV--GKALTGGYMTLSATVTTDKVAQTISSGEAGCFMH--GPTF 313 (427)
T ss_pred ---EEEEeccccCCCc-CCccchhhhcCC--CCCEEEe--chhhhcCcccceEEEEcHHHHHHHhcCCCCcccc--CCCC
Confidence 9999999965322 1111 11 1111 2687774 68887774 7888999888766664211 1211 1122
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC---CeeEEEEecCC---cHHH-----h
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE---LSSTVVFERPQ---DEEF-----V 411 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~iv~f~~~~---~~~~-----~ 411 (476)
.+.. .......++++.+..+ +..++..++.++|++.|++.+....... ...++.+...+ ...+ .
T Consensus 314 ~g~p--~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~ 388 (427)
T TIGR00508 314 MGNP--LACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVE 388 (427)
T ss_pred CcCH--HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHH
Confidence 2221 1222233444444222 4567888899999999988643211111 13333333221 1222 2
Q ss_pred hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 412 RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 412 ~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+++.+...++.+|++....+|++|||+++++++++.+
T Consensus 389 ~Gv~~~~~~~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 389 QGVWIRPFGKLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred CCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3444444456788887778999999999999998875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-11 Score=123.27 Aligned_cols=290 Identities=17% Similarity=0.113 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+...++.+.+.++..... ....+|+++||+|+-.|++.+|....+..|+.-+.+ |....-+..+.+.
T Consensus 83 ~~~~~la~~l~~~~p~~~-~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~ 161 (421)
T PRK06777 83 ASYVTLAERINALAPIDG-PAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPF 161 (421)
T ss_pred hHHHHHHHHHHHhCCCCC-CceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCC
Confidence 444566777777764321 124889999999999999999875444556554444 4333233322221
Q ss_pred --eEEEEeCCCC--C---ccCHHHHHHHHHc--CCCCcEEEEEeeCCCccccc-cC---HHHHHHHHHHhCCCCCceEEE
Q 011842 207 --ECVKVDCLIS--G---EIDCADFKAKLLQ--NKDKPAIINVNIGTTVKGAV-DD---LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 --~v~~v~~~~~--g---~~D~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~i-d~---l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..++.... + .-+++.+++.+.+ ..+....|++.-..+..|.. .| +++|.++|++||+ +++
T Consensus 162 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~-----llI 236 (421)
T PRK06777 162 PGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGI-----LLI 236 (421)
T ss_pred CCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 1122222111 1 1246778888864 23345566665445566643 34 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
+|++|.++... ........+....|+++ +.|.++.++++|+++.++++.+.+.... + ..++.+ .++.
T Consensus 237 ~DEv~tg~gr~-g~~~~~~~~~~~pDiv~--~sK~l~~G~pigav~~~~~i~~~~~~~~-~----~~T~~~-----~p~~ 303 (421)
T PRK06777 237 ADEVQTGFART-GKLFAMEYYDVKPDLIT--MAKSLGGGMPISAVVGRAEVMDAPAPGG-L----GGTYAG-----NPLA 303 (421)
T ss_pred EechhhCCccC-CchhhhhhcCCCCCEEe--eehhhcCCCceEEEEEcHHHHhccCCCC-C----CCCCCc-----CHHH
Confidence 99999865322 11111011111267665 5698888899999999988776653221 1 112222 2344
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecC-CeeEEE-EecCC----cHHHh---------hce
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNE-LSSTVV-FERPQ----DEEFV---------RRW 414 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~-~~~iv~-f~~~~----~~~~~---------~~~ 414 (476)
+.++++.+..-.-++..++..++.++|.+.|++. +......+ +..+.+ |..+. +.++. ++.
T Consensus 304 ~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv 383 (421)
T PRK06777 304 VAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGL 383 (421)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCe
Confidence 4444444321111457778888888888888774 33222223 333322 33321 11121 223
Q ss_pred ee-ccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 415 QL-ACQ--GNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 415 ~l-~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
.+ +.. ++.+|+......|+++||.+++.|++..
T Consensus 384 ~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 384 LLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred EEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 33 222 4688988766899999999999998765
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-11 Score=121.52 Aligned_cols=281 Identities=14% Similarity=0.077 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC-------------CcEEEecCCC-chHHHHHHHHc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP-------------DGILYASRES-HYSVFKAARMY 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p-------------~~~Vl~s~~~-H~S~~~~~~~~ 204 (476)
+...++.+.+.++.+.+ ..+|+++||+|+-.|+..+|.... +..|+.-+.+ |....-+....
T Consensus 57 ~~~~~la~~l~~~~~~~----~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~ 132 (382)
T PLN00144 57 IPQVELAKRLVASSFAD----RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALT 132 (382)
T ss_pred HHHHHHHHHHHhcCCCC----eEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcC
Confidence 44556777777765433 389999999999999999986421 2345544444 43332222222
Q ss_pred CC------------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc--cC--HHHHHHHHHHhCCCCC
Q 011842 205 RM------------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV--DD--LDLVIQTLEESGFTQD 268 (476)
Q Consensus 205 G~------------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i--d~--l~~I~~ia~~~g~~~~ 268 (476)
+- ++..+|.+ |++.|++.+.. ..+..|++.-..++.|.. ++ +++|.++|++||+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~--- 202 (382)
T PLN00144 133 SKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGA--- 202 (382)
T ss_pred CCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC---
Confidence 21 12333332 78999988853 234455554334443333 34 8999999999999
Q ss_pred ceEEEEecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCC
Q 011842 269 RFYIHCDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRN 347 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~ 347 (476)
++++|++|.++......... ...+ ..|.++ +.|.++.+.++|+++.++++.+.+... .+ ..++.++.
T Consensus 203 --llI~DEv~tg~gr~g~~~~~~~~~~--~PDi~t--~sK~l~~G~pig~v~~~~~~~~~~~~~-~~----~~T~~~~p- 270 (382)
T PLN00144 203 --LLVFDEVQCGLGRTGYLWAHEAYGV--EPDIMT--LAKPLAGGLPIGAVLVTEKVASAINPG-DH----GSTFAGGP- 270 (382)
T ss_pred --EEEEechhhCCCccchHhhhhhcCC--CCCEEE--ecccccCCcceEEEEEcHHHHhccCCC-CC----CCCCCCCH-
Confidence 99999999865332111000 1111 257444 459998889999999998877655321 11 11222221
Q ss_pred ChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEecC-CcHHH-----hhceeec
Q 011842 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFERP-QDEEF-----VRRWQLA 417 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~~-~~~~~-----~~~~~l~ 417 (476)
.......++++.+.... ..++..++.++|++.|++ .+...-......++.+... ....+ .++..+.
T Consensus 271 -l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~~~~~~~~~~~~~Gv~i~ 346 (382)
T PLN00144 271 -LVCNAALAVLDKISKPG---FLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDACRDSGLLVL 346 (382)
T ss_pred -HHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEEEecCccHHHHHHHHHCCeEEe
Confidence 12222333345553333 344444555555555543 3322111122223333322 12222 2344443
Q ss_pred cc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 CQ--GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 ~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.. .+.+|++.....|+++|+.+++.|.++...
T Consensus 347 ~~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 347 TAGKGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred ecCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 22 488999988878999999999999988764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-11 Score=122.31 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcC--------C---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYR--------M--- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G--------~--- 206 (476)
+.+.++.+.+.++..-. .....+|+++||+|+-.|+..+|....+..|+.-+.+ |....-+..+.+ .
T Consensus 76 ~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 154 (420)
T TIGR00700 76 EGYVALAEKLNRIAPGS-GPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPF 154 (420)
T ss_pred hHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCC
Confidence 44456677777776321 1124899999999999999999976444555544444 433222222211 1
Q ss_pred --eEEEEeCCCCC-----------ccCHHHHHHHHH--cCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCC
Q 011842 207 --ECVKVDCLISG-----------EIDCADFKAKLL--QNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQ 267 (476)
Q Consensus 207 --~v~~v~~~~~g-----------~~D~~~Le~~l~--~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~ 267 (476)
.+..+|..... .-+++.+++.+. ...+....|++.-....+|.+.| +++|.++|++||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gi-- 232 (420)
T TIGR00700 155 APEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGI-- 232 (420)
T ss_pred CCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC--
Confidence 12333331100 012567777764 23345566767655666677655 9999999999999
Q ss_pred CceEEEEecCcccccccccccCCCCC-CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 268 DRFYIHCDGALFGLMMPFVKKAPKVS-FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~~~~~~-~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++++|++|.++.... .... +. .....|+++ +.|.++.++++|+++.++++++.+.... . ..++.++
T Consensus 233 ---llI~DEV~tg~gr~g-~~~a-~~~~~~~pDi~~--lsK~l~~G~pig~v~~~~~i~~~~~~~~--~---~~T~~~~- 299 (420)
T TIGR00700 233 ---VFIADEVQTGFARTG-AMFA-CEHEGPEPDLIT--TAKSLADGLPLSGVTGRAEIMDAPAPGG--L---GGTYAGN- 299 (420)
T ss_pred ---EEEEEecccCCcccc-hhHH-HhhcCCCCCEEE--eeccccCCcceEEEEecHHHHhhcCCCC--c---CCCCCcC-
Confidence 999999998764322 1100 11 111267666 5699888999999999988876653211 1 1122222
Q ss_pred CChhHHHHHHH---HHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEec--C----CcHH----
Q 011842 347 NGHAPIFLWYT---LNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFER--P----QDEE---- 409 (476)
Q Consensus 347 ~~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~--~----~~~~---- 409 (476)
++.++++ ++.+....+ .++..++.+++++.|++ .+......+...++.+.. + ++..
T Consensus 300 ----pl~~aaa~a~l~~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~ 372 (420)
T TIGR00700 300 ----PLACAAALAVLAIIESEGL---IERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAER 372 (420)
T ss_pred ----HHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHH
Confidence 3555555 444333333 34444455556665554 333222222222333321 1 1111
Q ss_pred Hh-----hceeecc-c--CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 410 FV-----RRWQLAC-Q--GNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 410 ~~-----~~~~l~~-~--~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+. ++..+.. . ++.+|++....+|+++|+..++.|.+++
T Consensus 373 l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 373 IATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418 (420)
T ss_pred HHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 11 2333322 2 4788988766789999999999998875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-11 Score=117.27 Aligned_cols=300 Identities=15% Similarity=0.131 Sum_probs=195.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
|..++...+.+...-.+..+... -+.++|+|.|.+...++.++.+ +++.|++.+.++.+-....+.+|++++.|+.|
T Consensus 101 G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N--~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md 178 (472)
T KOG0634|consen 101 GIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLIN--RGDHVLIEEYTYPSALQSMEALGVKIIPVKMD 178 (472)
T ss_pred CcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhc--CCCceEEecccchHHHHhccccCceEEecccc
Confidence 55677776666544344444322 3588999999999999999998 99999999999999999999999999888887
Q ss_pred CCCccCHHHHHHHHHcCC------CCcE-EEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 215 ISGEIDCADFKAKLLQNK------DKPA-IINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~------~~p~-~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
. ..+|+|.|++.+..-+ .+|. +-.+-.|.|+||..-. -++|.++|++|++ +|+.|+.|....+.
T Consensus 179 ~-~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDf-----LIVeDdpYy~Lq~~ 252 (472)
T KOG0634|consen 179 Q-DGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDF-----LIVEDDPYYFLQMN 252 (472)
T ss_pred C-CCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCE-----EEEecCccceeecc
Confidence 4 4579999999997531 1243 2233357889998754 5799999999999 99999999765543
Q ss_pred cc----cc-CCCCC-----------Ccc-cc--cEEE-EcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccC
Q 011842 285 FV----KK-APKVS-----------FKK-PI--GSVS-VSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMG 344 (476)
Q Consensus 285 ~~----~~-~~~~~-----------~~~-~~--Dsi~-~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~ 344 (476)
.. +. .+.++ +.. .. .+|. -|+.|-+..+.+.||+..++..++........ +..
T Consensus 253 ~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~------~t~- 325 (472)
T KOG0634|consen 253 TYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEV------ATS- 325 (472)
T ss_pred ccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcce------eec-
Confidence 10 00 00011 100 01 1222 45789999999999999988765443221111 111
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHH----HHHHHHHHHHHh-cCC--eEeecCCeeEEEE-ecC-------Cc-H
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCL----RNAHYLKDRLLD-AGI--SAMLNELSSTVVF-ERP-------QD-E 408 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~----~~a~~l~~~L~~-~g~--~~~~~~~~~iv~f-~~~-------~~-~ 408 (476)
+.++....-+.+.++..|++|+.+.+.+.+ .++..+...|.+ ++. ..+.+|..++..+ +++ +. +
T Consensus 326 ~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~ 405 (472)
T KOG0634|consen 326 GPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSIN 405 (472)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchH
Confidence 245566777888899989988877776654 467777777777 333 3445565544443 333 21 1
Q ss_pred ---HHh------hceeecc--------c---C-CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 409 ---EFV------RRWQLAC--------Q---G-NIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 409 ---~~~------~~~~l~~--------~---~-~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+++ ++..+.| + + -.+|+++. ....|+++.-++.+...+++.+
T Consensus 406 q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a-~a~~e~l~~g~~rf~~~ike~f 468 (472)
T KOG0634|consen 406 QIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIA-FAEPEKLDEGIERFGSVIKEHF 468 (472)
T ss_pred HHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEee-cCCHHHHHHHHHHHHHHHHHHh
Confidence 111 1111111 1 2 37898775 3456677776666666655543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-11 Score=122.01 Aligned_cols=295 Identities=12% Similarity=0.072 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHcCCCCC-cccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH-HHHHHHc---------CC
Q 011842 139 QFEVGVLDWFARLWELENN-EYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSV-FKAARMY---------RM 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~-~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~-~~~~~~~---------G~ 206 (476)
+...++.+.+++++..+.. .....| +++||+||-.|+..+|....+..|+.-+.+|... .-+.... +.
T Consensus 82 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~ 161 (425)
T PRK09264 82 TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGV 161 (425)
T ss_pred HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCC
Confidence 4555667777776432211 112456 5899999999999999764445566555444332 2222221 11
Q ss_pred ---eEEEEeCCCC--Cc-cCHHHHHHHHHcCC---CCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---ECVKVDCLIS--GE-IDCADFKAKLLQNK---DKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---~v~~v~~~~~--g~-~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|.... .. -|+++|++.|.+.. +....|++.-..+..|.+ +.+++|.++|++||+ +++
T Consensus 162 ~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~-----llI 236 (425)
T PRK09264 162 PLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDI-----LLI 236 (425)
T ss_pred CCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCc-----EEE
Confidence 2445554311 01 27788999987532 234566666556666654 359999999999999 999
Q ss_pred EecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCC-CCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChh
Q 011842 274 CDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGC-PMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHA 350 (476)
Q Consensus 274 vD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~-p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~ 350 (476)
+|++|.|+... ... . ..+.. ..|+++++ |.++. +.++|++++++++ ..+.. ... ..++.+.. ..
T Consensus 237 ~DEV~tG~Grt-G~~~~~~~~~v--~PDi~t~~--K~l~~~G~pigav~~~~~i-~~~~~--~~~---~~T~~gnp--~~ 303 (425)
T PRK09264 237 VDDIQAGCGRT-GTFFSFERAGI--TPDIVTLS--KSISGYGLPMALVLIKPEL-DVWKP--GEH---NGTFRGNN--LA 303 (425)
T ss_pred EechhhCCccc-cHHHHHhhcCC--CCCEEEec--cccCCCccceEEEEEchhh-hccCC--Ccc---CCCCCCCH--HH
Confidence 99999764211 110 0 00111 25877664 88876 7889999998775 22211 010 11222221 11
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEe-ecCCeeEEEEecCCcH---HH-----hhceeec
Q 011842 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAM-LNELSSTVVFERPQDE---EF-----VRRWQLA 417 (476)
Q Consensus 351 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~-~~~~~~iv~f~~~~~~---~~-----~~~~~l~ 417 (476)
.....++++.+ ..-.+..++..++.++|+++|++. +.... ......++.+..++.. .+ .++..+.
T Consensus 304 ~aaa~a~l~~~--~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~ 381 (425)
T PRK09264 304 FVTATAALEEY--WSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIE 381 (425)
T ss_pred HHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEe
Confidence 22222334211 111346677777788888877653 21111 1112233344443321 12 1233332
Q ss_pred cc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 418 CQ---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 418 ~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.. ...+|++....+|+++|+.+++.|.++.+.+.+.
T Consensus 382 ~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~~~ 420 (425)
T PRK09264 382 TSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEVLAE 420 (425)
T ss_pred ccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 22 3677877777799999999999999998876543
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-11 Score=125.18 Aligned_cols=288 Identities=14% Similarity=0.028 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH-HHH-HHc-----------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF-KAA-RMY----------- 204 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~-~~~-~~~----------- 204 (476)
.+.+.++.+.+.++++++ ...|+++||+|+..|++.||....+..|+.-+.+|..+. ... ...
T Consensus 114 ~~~~~~lAe~l~~~~~~~----~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~ 189 (453)
T PRK07046 114 SEDAAWVGEELARRFGLP----YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLL 189 (453)
T ss_pred CHHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCC
Confidence 377788888898888653 389999999999999999998645556665444333321 111 100
Q ss_pred CC------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 205 RM------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 205 G~------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
|. .+..+|.+ |++.|++.+.. +....|++.-.....|.+.| ++++.++|++||+ ++++
T Consensus 190 g~~~~~~~~~~~~~~n-----d~~~l~~~l~~--~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~-----llI~ 257 (453)
T PRK07046 190 GQVHDLTATTRVVEFN-----DLAALEAALAD--GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGT-----LLVI 257 (453)
T ss_pred CCCccccCceEeeCCC-----CHHHHHHHhCC--CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCC-----EEEE
Confidence 11 12223322 88999998853 33456666544555566655 8999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|+++.......... ..+.. ..|.+++ .|.++.++++|+++.++++.+.+.... .+..+ .....+|-++ .++.
T Consensus 258 DEV~tfr~g~Gg~~-~~~gv--~PDi~t~--gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~-~~~~~~T~~g-npl~ 330 (453)
T PRK07046 258 DETHTISSGPGGYT-RAHGL--EPDFLVV--GKPIAGGVPCAVYGFSAELAERAQAAKASAPPG-HSGIGTTLSA-NALA 330 (453)
T ss_pred EccccCccCCcchh-HHhCC--Cccceee--hhhhcCCCcceeeeehHHHHHHHhhccccCCCC-CceeCCCCcc-cHHH
Confidence 99985111111111 11211 2688775 599988899999999998876653210 00000 0011122221 2344
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeE-eecCCe-eEEEEecCC-----------cHHHh-----
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISA-MLNELS-STVVFERPQ-----------DEEFV----- 411 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~-~~~~~~-~iv~f~~~~-----------~~~~~----- 411 (476)
..++++.+..-.-++..++..++.++|+++|++ .++.. +...++ ..+.|..+. +....
T Consensus 331 ~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (453)
T PRK07046 331 MAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHL 410 (453)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHH
Confidence 444444332111123466666777777777764 44332 222222 222232111 11111
Q ss_pred ----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 412 ----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 412 ----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+++.+...++.++ ++|.+|++|||.++++++++.+++
T Consensus 411 ~~~~~Gv~~~~~~~~~~--~~p~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 411 YLLNRGVLITPFHNMML--VCPATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred HHHHCCCEEecccCcEE--EeCCCCHHHHHHHHHHHHHHHHHH
Confidence 2222222233344 445699999999999999988765
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-10 Score=121.46 Aligned_cols=287 Identities=14% Similarity=0.085 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+.++..... ....+|+++||+|+-.|+..+|....+..|+.-+.+ |....-+..+.|.
T Consensus 83 ~~~~~la~~l~~~~p~~~-~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 161 (421)
T PRK09792 83 ESYVTLAEKINALAPVSG-QAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPF 161 (421)
T ss_pred HHHHHHHHHHHHhCCCCC-CceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCC
Confidence 555667777877764221 124889999999999999999975344455554444 4332222222221
Q ss_pred --eEEEEeCC--CCCc---cCHHHHHHHHHcC--CCCcEEEEEeeCCCcccccc-C---HHHHHHHHHHhCCCCCceEEE
Q 011842 207 --ECVKVDCL--ISGE---IDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVD-D---LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 --~v~~v~~~--~~g~---~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id-~---l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|.. .++. -|++.+++.+.+. .+.+..|++.-..++.|... | +++|.++|++||+ +++
T Consensus 162 ~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~-----llI 236 (421)
T PRK09792 162 PGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGI-----VMI 236 (421)
T ss_pred CCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 13333432 1111 1347888888742 34456677765577778654 5 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
+|+++.++... .+....-.+....|.+++ .|.++.++++|+++++.++.+.+... .+ ..|+.+. ++.
T Consensus 237 ~DEv~tg~gr~-G~~~a~~~~~~~pDi~t~--gK~l~~G~pigav~~~~~i~~~~~~~-~~----~~T~~gn-----pl~ 303 (421)
T PRK09792 237 ADEVQSGFART-GKLFAMDHYADKPDLMTM--AKSLAGGMPLSGVVGNANIMDAPAPG-GL----GGTYAGN-----PLA 303 (421)
T ss_pred EeccccCCCCC-CchhHHHhcCCCCcEEEe--ehhhcCCCceEEEEEcHHHHhccCCC-Cc----CCCCCCC-----HHH
Confidence 99999875332 111110011123675544 59998889999999998876655321 11 1122222 344
Q ss_pred HH---HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCC-eeEEEEecCCc----------HHH-----
Q 011842 354 LW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNEL-SSTVVFERPQD----------EEF----- 410 (476)
Q Consensus 354 ~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~-~~iv~f~~~~~----------~~~----- 410 (476)
+. +.++.+... +.+++..++.+++.+.|++. +... ...+ ..++.+..+++ ..+
T Consensus 304 ~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~v~-~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~ 379 (421)
T PRK09792 304 VAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPAIA-AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL 379 (421)
T ss_pred HHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCCcc-eecccceEEEEEecCCccCCcchHHHHHHHHHHH
Confidence 44 344444222 45666667777777776653 3211 1122 22333332211 111
Q ss_pred hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 411 VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 411 ~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+++.+.. .++.+|+.....+|+++|++++++|.++.+
T Consensus 380 ~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 380 AQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred HCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 13333322 247889888888999999999999988753
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.9e-11 Score=122.63 Aligned_cols=289 Identities=14% Similarity=0.066 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH-HHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF-KAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~-~~~~~~G~----------- 206 (476)
+...++.+++.+++.... ....+|+++|++|+..|+..+|....+..|+.-+.+|..+. .+..+.+.
T Consensus 99 ~~~~~la~~l~~~~p~~~-~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~ 177 (443)
T PRK06058 99 EGYVAVAEQLNRLTPGDH-EKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPF 177 (443)
T ss_pred HHHHHHHHHHHHhCCCCC-CCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCC
Confidence 666678888888775321 12488999999999999999987544556666555544433 33322221
Q ss_pred --eEEEEeCCCCCc------cC--------HHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCC
Q 011842 207 --ECVKVDCLISGE------ID--------CADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFT 266 (476)
Q Consensus 207 --~v~~v~~~~~g~------~D--------~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~ 266 (476)
.+..+|.....+ .+ .+.|++.+. ++....|++.-.....|.+.| +++|.++|++||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gi- 254 (443)
T PRK06058 178 APEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGV- 254 (443)
T ss_pred CCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-
Confidence 123333211000 11 122233322 233455655433444455544 9999999999999
Q ss_pred CCceEEEEecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS 345 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~s 345 (476)
++++|+++.|+......... .+.. ..|.++++ |.++.++++|+++.++++.+.+... .+ ..|+.+
T Consensus 255 ----llI~DEV~tGfgRtG~~fa~~~~gv--~PDiv~~g--K~l~~G~Pi~av~~~~~i~~~~~~~-~~----~~T~~g- 320 (443)
T PRK06058 255 ----VFIADEVQTGFARTGAWFACEHEGI--VPDLITTA--KGIAGGLPLSAVTGRAEIMDAPHPG-GL----GGTYGG- 320 (443)
T ss_pred ----EEEEeccccCCCcChhhhHHHhcCC--CCCEEEEc--ccccCCCccEEEEEcHHHHhhccCC-CC----CCCCCC-
Confidence 99999999765321111000 0111 25888775 9888889999999999877655321 11 112222
Q ss_pred CCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeE-EEEecC----CcHHH-----
Q 011842 346 RNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSST-VVFERP----QDEEF----- 410 (476)
Q Consensus 346 r~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~i-v~f~~~----~~~~~----- 410 (476)
.++.+.++++.+..-.-.+..++..++.++|.++|++. +... +...+..+ +.|..+ .+.++
T Consensus 321 ----npl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~ 396 (443)
T PRK06058 321 ----NPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALA 396 (443)
T ss_pred ----CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHH
Confidence 23445555544421111346677777888888888773 3211 22222222 223211 11111
Q ss_pred ----hhceeecc-c--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 ----VRRWQLAC-Q--GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 ----~~~~~l~~-~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+.. . ++.+|+.....+|+++||.++++|+++.++
T Consensus 397 ~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 397 AAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred HHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 12333322 2 478999888889999999999999988754
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=118.91 Aligned_cols=288 Identities=17% Similarity=0.125 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEE-ecCCCchHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY-ASRESHYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl-~s~~~H~S~~~~~~~~G~----------- 206 (476)
+...++.+.|.+++.-+ .....+|+++||+||=.|+..||....+..|| ....-|..-..+..+.|-
T Consensus 99 e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~ 177 (447)
T COG0160 99 EPYVELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPL 177 (447)
T ss_pred hhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCC
Confidence 55556667777766542 12238899999999999999999875555455 444445443333333321
Q ss_pred --eEEEEeCCCCC------------ccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCC
Q 011842 207 --ECVKVDCLISG------------EIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGF 265 (476)
Q Consensus 207 --~v~~v~~~~~g------------~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~ 265 (476)
.+..+|..... .-..+.++++|... ...|..+++....+.-|.+.| ++++.++|++||+
T Consensus 178 ~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gi 257 (447)
T COG0160 178 PPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGI 257 (447)
T ss_pred CCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 25566553211 22345566666543 346778888777888888865 8999999999999
Q ss_pred CCCceEEEEecCcccccccccccCCCCCCc--c-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcc
Q 011842 266 TQDRFYIHCDGALFGLMMPFVKKAPKVSFK--K-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATI 342 (476)
Q Consensus 266 ~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~--~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~ 342 (476)
++++|++|.|+---+ + -|.+. . ..|++|++ |.++.+.+.|.++.|.++.+.......| ++
T Consensus 258 -----llI~DEVQtG~GRTG-~---~fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~ei~~~~~g~~~~------Tf 320 (447)
T COG0160 258 -----LLIADEVQTGFGRTG-K---MFAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAEIMDWPPGGHGG------TF 320 (447)
T ss_pred -----EEEEeccccCCCccc-c---chhhhhcCCCCCEEEec--ccccCCCceeEEeccHHhcccCCcccCC------CC
Confidence 999999998753221 1 12221 1 27999877 9999999999999999876533222222 22
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC--CeEee---cCCeeE-EEEecC-----CcHH--
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--ISAML---NELSST-VVFERP-----QDEE-- 409 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~~~---~~~~~i-v~f~~~-----~~~~-- 409 (476)
.|. +++..+++..+..-.-++..++..++-+||+++|.++- ...+. ..+..+ |-|..+ ++.+
T Consensus 321 ~GN-----pva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~ 395 (447)
T COG0160 321 GGN-----PVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELA 395 (447)
T ss_pred CcC-----HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHH
Confidence 222 34444444433211123577777888888888887641 21221 112211 223322 1111
Q ss_pred -------Hhhceee-ccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 410 -------FVRRWQL-ACQ--GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 410 -------~~~~~~l-~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+.+++.+ .|. ++.+|+..--..|+|++|+++++|.+++++
T Consensus 396 ~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 396 AKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred HHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 2234333 555 799999998889999999999999998765
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=133.75 Aligned_cols=236 Identities=16% Similarity=0.142 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--C--
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--I-- 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--~-- 215 (476)
.-+++.+..|+.+|.+.. -++++|.|.||...+++... |||.|++++..|-|+..+..+.|+..+++... +
T Consensus 71 ~i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~~~--~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 71 PIKEAQELAARVFGADHT---YFVVNGTSTANKAVINAVLT--PGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred cHHHHHHHHHHHhCCCce---EEEECCccHHHHHHHHhhcC--CCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccc
Confidence 445677888999999864 67788999999999988877 99999999999999999999999998888654 3
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
-|.++.+.+++++.++...-.+++++. .|+.|.+-++++|.+.+.++++ |+.+|.+|+........ .+...
T Consensus 146 gi~ggI~~~~~~~~l~~~~~~~k~~vitn-pTYdGv~~n~~~i~~~~~~~~a-----~v~~deah~~~~~~~~~-l~~~~ 218 (557)
T COG1982 146 GIIGGIPLETFKEALLAHPDAEKLAVITN-PTYDGVCYNLRKIVELLHHYGA-----WVLYDEAHPAHFDFSPM-LPESA 218 (557)
T ss_pred cccCCCCHHHHHHHHHhChhhheeEEEec-CccceEeecHHHHHHHHhhcCc-----eEEhhhcCccccccccc-Ccchh
Confidence 267999999999887644313566654 5688999999999999999999 99999999765432211 11122
Q ss_pred CcccccEEEEcCCCCCCCCCCceeEEeehh-hh--hhhcCCccccCCCCCcccCCCC--ChhHHHHHH-HHHHhChhcHH
Q 011842 294 FKKPIGSVSVSGHKFVGCPMPCGVQITRME-HI--NVLSSNVEYLASRDATIMGSRN--GHAPIFLWY-TLNRKGYKGFQ 367 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~--~~l~~~~~yl~~~~~~~~~sr~--~~~~l~~~~-~l~~~g~~g~~ 367 (476)
....+|+.+-|.||.+++-..++++.+++. .+ +.+........+ .|++ ..+++.... .+...|..-.+
T Consensus 219 ~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~S------TSPsY~l~ASlD~Ar~~~~~~G~~l~~ 292 (557)
T COG1982 219 LNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQS------TSPSYPLMASLDVARMQEGNAGRELWQ 292 (557)
T ss_pred hhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHcc------CCchHHHHHHHHHHHHhhhhhhHHHHH
Confidence 223489999999999999888999998862 11 111110011111 1110 011222211 11122333344
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEee
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAML 393 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~ 393 (476)
+.+++..+.++.+++..++.+++.+.
T Consensus 293 ~~~~~~i~~r~~~~~~~~~~~~~~~~ 318 (557)
T COG1982 293 EVIDEAIDFRKALRRLINEIGFFPVL 318 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 55788888899999988888755443
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=128.54 Aligned_cols=292 Identities=16% Similarity=0.089 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchh-HHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--CC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTE-GNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--IS 216 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~-An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--~~ 216 (476)
+-..+...+-++.|+..- ...++++.+|. ++.+.+++.+.+.....|+.+...|+|-.+++..+|++++.||.. ++
T Consensus 57 ltn~l~~d~~~~~G~~~~-~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d 135 (389)
T PF05889_consen 57 LTNSLVLDALRLAGLRSV-KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGD 135 (389)
T ss_dssp HHHHHHHHHHHHTTHTTH-CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETT
T ss_pred HHHHHHHHHHHHcCCccc-cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCC
Confidence 334444455567898732 23677777654 455667777644456789999999999999999999999999863 22
Q ss_pred -CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC-HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 217 -GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD-LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 217 -g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~-l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
-..|++.+|+.+++.+..+.+.++|+.+-..+-..| +++|+++|++||+ ..++.+|||.-.-....... -..
T Consensus 136 ~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~I-----PhlvNnAYgvQ~~~~~~~i~-~a~ 209 (389)
T PF05889_consen 136 ELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDI-----PHLVNNAYGVQSSKCMHLIQ-QAW 209 (389)
T ss_dssp EEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT-------EEEEGTTTTT-HHHHHHHH-HHH
T ss_pred eeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCC-----ceEEccchhhhHHHHHHHHH-HHH
Confidence 346889999999877767788888888777777755 9999999999999 99999999762110000000 001
Q ss_pred c-ccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 K-KPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
. .++|.+.-+.-|-+++|.|-+.+...++ .+..+. ..| .+-....+.+.+...+..+|..++...+..
T Consensus 210 ~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs--~~Y--------pGRas~sp~ld~~itLl~LG~~g~~~ll~~ 279 (389)
T PF05889_consen 210 RVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVS--KEY--------PGRASASPSLDLFITLLSLGCTGYGALLKE 279 (389)
T ss_dssp HHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHH--HTS--------HSHBTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHH--HHh--------hhhhhcccchHHHHHHHHHhhhHHHHHHHH
Confidence 1 1378888888888888888888887765 444432 223 222223456778888999999999999999
Q ss_pred HHHHHHHHHHHHHhc----CCeEeecC-CeeEEEEecCC-------c-HHH-----hhce---e-eccc-----------
Q 011842 373 CLRNAHYLKDRLLDA----GISAMLNE-LSSTVVFERPQ-------D-EEF-----VRRW---Q-LACQ----------- 419 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~----g~~~~~~~-~~~iv~f~~~~-------~-~~~-----~~~~---~-l~~~----------- 419 (476)
..++-.++.++|++. +-.++..| ....+.|..+. + ..+ .++. + +...
T Consensus 280 r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~y 359 (389)
T PF05889_consen 280 RKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNY 359 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCC
Confidence 999999999998773 42222222 23334444331 1 011 1111 1 1100
Q ss_pred -CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 420 -GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 420 -~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..++-+......|+||||.|++.|+++.+
T Consensus 360 p~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 360 PCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 14566667788999999999999998864
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-10 Score=120.00 Aligned_cols=292 Identities=14% Similarity=0.062 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCCC-chHHHHHHHHcCC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRES-HYSVFKAARMYRM------ 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~~-H~S~~~~~~~~G~------ 206 (476)
+...++.+.++++.+-+. ...+|+++||+|+-.|+..+|.. .++..|+.-+.+ |....-+..+.+-
T Consensus 86 ~~~~~la~~L~~~~p~~~--~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~ 163 (428)
T PRK07986 86 PPAIELCRKLVAMTPQPL--ECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHS 163 (428)
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhh
Confidence 555677788888764322 24899999999999999999864 123455544444 4322222222121
Q ss_pred -------eEEEEeCCCC------CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-----cCHHHHHHHHHHhCCCCC
Q 011842 207 -------ECVKVDCLIS------GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-----DDLDLVIQTLEESGFTQD 268 (476)
Q Consensus 207 -------~v~~v~~~~~------g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-----d~l~~I~~ia~~~g~~~~ 268 (476)
.+..+|.... ..-|+++|++.+.........|++.......|.+ ..+++|.++|++||+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~--- 240 (428)
T PRK07986 164 LYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGI--- 240 (428)
T ss_pred ccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC---
Confidence 1223332110 0236788888887544444455554322333332 339999999999999
Q ss_pred ceEEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc--cccCCCCCcccC
Q 011842 269 RFYIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV--EYLASRDATIMG 344 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~--~yl~~~~~~~~~ 344 (476)
++++|+++.|+ ....+. ....... ..|+++ +.|.++.+ .++|++++++++.+.+.... .+.. ..|+.+
T Consensus 241 --lLI~DEv~tG~-GrtG~~fa~~~~gv-~PDi~t--~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~--~~T~~g 312 (428)
T PRK07986 241 --LLIADEIATGF-GRTGKLFACEHAGI-APDILC--LGKALTGGTMTLSATLTTREVAETISNGEAGCFMH--GPTFMG 312 (428)
T ss_pred --EEEEeccccCC-ccCCCeeeecccCC-CCCEEE--echhhhCCcccCcchhchHHHHHHhhcCCCCcccc--CCCCCc
Confidence 99999999654 211111 0001111 268886 45888877 48899999988876664311 1111 122222
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEee--cCCeeEEEEec--CCc-HHH-----hhc
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAML--NELSSTVVFER--PQD-EEF-----VRR 413 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~--~~~~~iv~f~~--~~~-~~~-----~~~ 413 (476)
.+ .......++++.+..+ +..++..++.++|++.|++.. ...+. .-...++.+.. +.. ..+ .++
T Consensus 313 ~p--~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~G 387 (428)
T PRK07986 313 NP--LACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQG 387 (428)
T ss_pred CH--HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCC
Confidence 21 1222233344444322 357777788888888887741 11111 11122333332 211 122 234
Q ss_pred eeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 414 WQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 414 ~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+.+...++.+|+.....+|++||+.++++|.++.+
T Consensus 388 l~~~~~g~~i~~~Ppl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 388 VWIRPFGKLIYLMPPYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred cEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 44444467888888888999999999999998864
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-10 Score=119.73 Aligned_cols=290 Identities=12% Similarity=0.046 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHcCCCCC-cccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH-HHHHHHcCC---------
Q 011842 139 QFEVGVLDWFARLWELENN-EYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSV-FKAARMYRM--------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~-~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~-~~~~~~~G~--------- 206 (476)
+...++.+.+++++..+.. .....| +++|++|+-.|++.+|....+..|+.-+.+|... .-+....|-
T Consensus 78 ~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~ 157 (412)
T TIGR02407 78 EAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGV 157 (412)
T ss_pred HHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCC
Confidence 5556677777776422211 112445 5899999999999999764455666555544333 222222221
Q ss_pred ---eEEEEeCCCCC---ccCHHHHHHHHHcCC---CCcEEEEEeeCCCccccc----cCHHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---ECVKVDCLISG---EIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAV----DDLDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---~v~~v~~~~~g---~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~i----d~l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|..... .-+++.+++.+.+.. +.+..|++.-..+..|.+ +-+++|.++|++||+ +++
T Consensus 158 ~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~-----llI 232 (412)
T TIGR02407 158 PLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDI-----LLI 232 (412)
T ss_pred CCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 23444432100 124777888887542 234566665446666764 238999999999999 999
Q ss_pred EecCcccccccccccC-CCCCCcccccEEEEcCCCCCCC-CCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGC-PMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~-p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
.|+++.|+--...-.. ..... ..|.++++ |+++. +.++|+++++++. +.+.. ..+ ..++.+.. ...
T Consensus 233 ~DEV~tG~GRtG~~~a~~~~~v--~PDi~~~~--K~lg~~G~pigav~~~~~~-~~~~~-~~~----~~T~~gnp--l~~ 300 (412)
T TIGR02407 233 VDDIQAGCGRTGTFFSFEPAGI--EPDIVCLS--KSISGYGLPLALTLIKPEL-DVWKP-GEH----NGTFRGNN--LAF 300 (412)
T ss_pred EechhhCCCccchhHHhcccCC--CCCEEEec--hhccCCccceeEEEEchhh-hccCC-Ccc----CCCCCccH--HHH
Confidence 9999975421100000 00111 26877655 99987 8899999998775 33321 111 12222221 111
Q ss_pred HHHHHHHHH-hChhcHHHHHHHHHHHHHHHHHHHHh----cC-CeEeecCCeeEEEEecCCc---HHH-----hhceeec
Q 011842 352 IFLWYTLNR-KGYKGFQKEVQKCLRNAHYLKDRLLD----AG-ISAMLNELSSTVVFERPQD---EEF-----VRRWQLA 417 (476)
Q Consensus 352 l~~~~~l~~-~g~~g~~~~~~~~~~~a~~l~~~L~~----~g-~~~~~~~~~~iv~f~~~~~---~~~-----~~~~~l~ 417 (476)
....++++. +.. .+..++..++.++|+++|++ .+ ...-......++.+..++. ..+ .+++.+.
T Consensus 301 aaa~a~l~~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~ 377 (412)
T TIGR02407 301 VTATAALEYYWSD---DAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIE 377 (412)
T ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEe
Confidence 222344543 322 33455566666777777664 33 2111122233444444432 112 2333342
Q ss_pred c---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 418 C---QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 418 ~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
. .++.+|++....+|++|+|.+++.|+++.+
T Consensus 378 ~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 378 TSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2 247899999999999999999999998764
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=120.76 Aligned_cols=295 Identities=12% Similarity=0.007 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+.+++..+. ...+|+++||+|+-.|+..+|... + +..|+.-..+ |..-.-+..+.|-
T Consensus 87 ~~~~~lae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 164 (429)
T PRK06173 87 EPAVELAQKLLEILPPSL--NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMH 164 (429)
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhh
Confidence 555677777887764222 248999999999999999998641 2 3345544444 4321112111110
Q ss_pred --------eEEEEeCCCC------CccCHHHHHHHHHcCCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHhCCCC
Q 011842 207 --------ECVKVDCLIS------GEIDCADFKAKLLQNKDKPAIINVNIG-TTVKGAVDD----LDLVIQTLEESGFTQ 267 (476)
Q Consensus 207 --------~v~~v~~~~~------g~~D~~~Le~~l~~~~~~p~~vv~t~g-tt~tG~id~----l~~I~~ia~~~g~~~ 267 (476)
.+..+|.... ..-+++.|++.|.........|++.-. ...-|.+.| +++|.++|++||+
T Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~-- 242 (429)
T PRK06173 165 GLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV-- 242 (429)
T ss_pred hcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC--
Confidence 1223332110 112567788888755455556666532 444455532 8999999999999
Q ss_pred CceEEEEecCcccccccccccC--CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc--cccCCCCCcc
Q 011842 268 DRFYIHCDGALFGLMMPFVKKA--PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV--EYLASRDATI 342 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~~--~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~--~yl~~~~~~~ 342 (476)
++++|++|.|+ ....+.. ..+.. ..|+++ +.|.++.++ .+|.++.++++.+.+.... .+..+ .|+
T Consensus 243 ---llI~DEv~tG~-GrtG~~~a~~~~gv--~PDiv~--~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~--~T~ 312 (429)
T PRK06173 243 ---LLIFDEIATGF-GRTGKLFALEHAGV--VPDIMC--IGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHG--PTF 312 (429)
T ss_pred ---eEEecchhcCC-CcCCcchHHHhcCC--CCCEEE--eehhhhCCccccceEEecHHHHHHHhcCCCCccccC--CCC
Confidence 99999999653 2222110 01111 268777 468887774 7899999988766553211 11111 122
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeec--CCeeEEEEecCCc---HHH-----h
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLN--ELSSTVVFERPQD---EEF-----V 411 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~--~~~~iv~f~~~~~---~~~-----~ 411 (476)
.+.. .......++++.+..+ +..++..++.++|++.|++. +...+.. ....++.+....+ ..+ .
T Consensus 313 ~g~p--~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e 387 (429)
T PRK06173 313 MANP--LACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVE 387 (429)
T ss_pred CcCH--HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHH
Confidence 2211 1222233444444222 35677788888999998864 2221211 1233444433321 122 2
Q ss_pred hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 412 RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 412 ~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+++.+...++.+|+.....+|++|||.++++|+++.+..+.
T Consensus 388 ~Gi~v~~~g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 428 (429)
T PRK06173 388 HGIWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQEYN 428 (429)
T ss_pred CCeEEEecCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34555555678998888889999999999999999887663
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-10 Score=121.05 Aligned_cols=295 Identities=12% Similarity=0.085 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+.++++.. ...+|+++||+|+..|+..||... .+..|+.-+.+ |....-+....|.
T Consensus 89 ~~~~~lae~l~~~~~~~---~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 165 (451)
T PRK07678 89 EPAIKLAEKLNEWLGGE---YVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY 165 (451)
T ss_pred HHHHHHHHHHHHhCCCC---CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence 45566778888877543 248999999999999999998742 23455554444 4332222222221
Q ss_pred -------eEEEEeCCCCCc---------cC---HHHHHHHHHc-CCCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLISGE---------ID---CADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~g~---------~D---~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|.....+ .| ++.+++.|+. ..+.+..|++.-....-|.+.| ++++.++|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~ 245 (451)
T PRK07678 166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK 245 (451)
T ss_pred ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence 223333221111 11 2346777753 2344556666544555566655 8999999999
Q ss_pred hCCCCCceEEEEecCcccccccccc-cCCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCcccc-CCCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVK-KAPKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYL-ASRD 339 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~-~~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl-~~~~ 339 (476)
||+ ++++|+++.|+-..... ....+.+ ..|.++++ |.++.+ .++|.+++++++.+.+.....+. ....
T Consensus 246 ~g~-----llI~DEV~tGfGRtG~~~~~~~~gv--~PDivt~g--K~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~ 316 (451)
T PRK07678 246 HGA-----LLISDEVICGFGRTGKAFGFMNYGV--KPDIITMA--KGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHV 316 (451)
T ss_pred cCC-----EEEEeehhhcCCcCchhHHHHhcCC--CCCEEEee--cccccCCcceeEEEEcHHHHHHHhccCcccccccC
Confidence 999 99999999654221100 0011221 27888774 988877 58999999999876664321110 0011
Q ss_pred CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEec--------CCc
Q 011842 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFER--------PQD 407 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~--------~~~ 407 (476)
.|+.+. ++...++++.+..-.-++..++..++.++|++.|++ .+...-......++.+.. +.+
T Consensus 317 ~T~~gn-----p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~ 391 (451)
T PRK07678 317 NTFGGN-----PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPAD 391 (451)
T ss_pred CCCCcC-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCc
Confidence 222222 344444443332111123566677777777777754 243211111112222221 111
Q ss_pred HH----H-----hhceeecc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 EE----F-----VRRWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 ~~----~-----~~~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.. + .+++.+.. .++.+|++....+|++|||.++++|.++.+++
T Consensus 392 ~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 392 NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred hHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 11 1 12333322 23678888888889999999999999987653
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=121.22 Aligned_cols=294 Identities=11% Similarity=0.009 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----C-CCcEEEecCCCchHHH-HHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----F-PDGILYASRESHYSVF-KAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~-p~~~Vl~s~~~H~S~~-~~~~~~G~----- 206 (476)
+...++.+.++++.+... ...+|+++||+|+-.|+..++.. . .+..|+.-+.+|.... -+..+.|-
T Consensus 97 ~~~~~lAe~L~~~~p~~~--~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~ 174 (453)
T PRK06943 97 EPAIELAERLAALTGGTL--GHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKD 174 (453)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhc
Confidence 555677788888775332 24899999999999999999653 1 2345555554443322 22222221
Q ss_pred -------eEEEEeCCCC-C-----------ccCHHHHHHHHHcCCCCcEEEEEee-CCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLIS-G-----------EIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~-g-----------~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|.... + .-|++.|++.+....+....|++.- .....|.+.| ++++.++|++
T Consensus 175 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~ 254 (453)
T PRK06943 175 AYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDR 254 (453)
T ss_pred ccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHH
Confidence 1233332211 0 0135778888875555556666653 2455566533 8999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc---cccCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV---EYLAS 337 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~---~yl~~ 337 (476)
||+ ++++|+++.|+--.+.-.. ..+. -..|.++++ |.++.++ ++|.+++++++.+.+.... .++.
T Consensus 255 ~gi-----llI~DEV~TG~GRtG~~fa~~~~g--v~PDivt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~- 324 (453)
T PRK06943 255 YGV-----HLIADEIAVGCGRTGTFFACEQAG--VWPDFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLH- 324 (453)
T ss_pred cCC-----EEEeechhhCCCCCcchhHHHhCC--CCCCeEeee--hhhccCcccceEEEEcHHHHHhhcccCccCCccC-
Confidence 999 9999999876521110000 0011 127999885 9888884 8999999998876653211 1110
Q ss_pred CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCe-EeecCCee-EEEEecC-C-cHH-
Q 011842 338 RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GIS-AMLNELSS-TVVFERP-Q-DEE- 409 (476)
Q Consensus 338 ~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~-~~~~~~~~-iv~f~~~-~-~~~- 409 (476)
..|+.+ .++...++++.+..-.-++.+++..++.++|.+.|++. +.. .+...+.. -+-|..+ . ...
T Consensus 325 -~~T~~g-----npl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~ 398 (453)
T PRK06943 325 -SHSYTG-----NPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTF 398 (453)
T ss_pred -CCCCCC-----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHH
Confidence 112222 23444444444321111345677777888888888764 111 11111211 1222211 1 111
Q ss_pred ---H-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 410 ---F-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 410 ---~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+ .+++.+...++.+|++....+|++|||.++++|+++++++
T Consensus 399 ~~~i~~~~~~~Gll~~~~g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 399 SRRFFEAALERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred HHHHHHHHHHCCcEEEecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1 1333343345678888778899999999999999998775
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=118.79 Aligned_cols=283 Identities=12% Similarity=0.044 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D 220 (476)
+-.+.+.+++++|.+. .++-+-|-.++..++-+... .||+|++++..++.+.++.++..-.+..+.++ |
T Consensus 141 HldlE~~iakF~G~E~----aivYs~gF~ti~S~ipafsK--rGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-----d 209 (467)
T KOG1358|consen 141 HLDLEKRIAKFMGTED----AIVYSYGFSTIESAIPAFSK--RGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-----D 209 (467)
T ss_pred ecccHHHHHHhhCCcc----eeeeccccchhhhcchhhhc--cCcEEEEehhhhHHHHHHHhhhhheeEEecCC-----C
Confidence 3344455889999985 45555555555555555544 89999999999999999999998899999887 8
Q ss_pred HHHHHHHHHcCC-------C--Cc-EEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-ccccC
Q 011842 221 CADFKAKLLQNK-------D--KP-AIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKKA 289 (476)
Q Consensus 221 ~~~Le~~l~~~~-------~--~p-~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~~ 289 (476)
+++||+.+.+.+ + .+ .++++.--.-++|.+-|+.+|.++..||.. .++.|+.++.+.+. .++..
T Consensus 210 m~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~-----RvildEs~SfG~lg~~GrGv 284 (467)
T KOG1358|consen 210 MEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKF-----RVILDESLSFGVLGKTGRGV 284 (467)
T ss_pred HHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheE-----EEEEecccccccccccCccc
Confidence 999998876543 1 12 245454448889999999999999999999 99999999866543 23332
Q ss_pred CC-CCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcH
Q 011842 290 PK-VSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGF 366 (476)
Q Consensus 290 ~~-~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~ 366 (476)
.. +... ..+|.++.+....++. .|.+++.+..+- ..+-+. ..++.+|+...+ +..-++.+++. .+.-
T Consensus 285 teH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~----~hQrLS--g~~Y~fSAslPp-~la~aa~~ai~i~~~~ 354 (467)
T KOG1358|consen 285 TEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIA----DHQRLS--GSGYCFSASLPP-YLAGAAIKAILIEEWN 354 (467)
T ss_pred cccCCCCccceeeeeecccccccc---cCceeecceeeE----eeeecc--ccceeeeccCch-hhhhhHHHHHHHHhhC
Confidence 22 2222 3389999998777764 444444443210 011111 123344554332 22223333332 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeE-eecCCeeEEEEecCC-----cH------HH-----hhceeecc-----------
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISA-MLNELSSTVVFERPQ-----DE------EF-----VRRWQLAC----------- 418 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~iv~f~~~~-----~~------~~-----~~~~~l~~----------- 418 (476)
.++++.++.....+-..|+...... ...+.++++...... ++ ++ .+.+.+..
T Consensus 355 p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~ 434 (467)
T KOG1358|consen 355 PEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCP 434 (467)
T ss_pred cchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCC
Confidence 4467777777777888887754334 445667777665432 11 11 12222210
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
-...+|++++..+++|+|+++.+.|++....
T Consensus 435 ~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 435 IPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 1246899999999999999999999987654
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-10 Score=117.78 Aligned_cols=289 Identities=13% Similarity=0.075 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcC--------C---
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYR--------M--- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G--------~--- 206 (476)
+...++.+.+.+++.-+. ....+|+++||+|+-.|++.+|....+..|+.-+.+ |....-+..+.| .
T Consensus 83 ~~~~~la~~l~~~~p~~~-~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~ 161 (425)
T PRK07495 83 ENYVRLAERLNALVPGDF-AKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAM 161 (425)
T ss_pred HHHHHHHHHHHHhCCCCC-CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCC
Confidence 455567777877764221 124899999999999999999875444556654444 433222222111 1
Q ss_pred --eEEEEeCCCC-CccC----HHHHHHHHHc--CCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHhCCCCCceEEE
Q 011842 207 --ECVKVDCLIS-GEID----CADFKAKLLQ--NKDKPAIINVNIGTTVKGAVD----DLDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 --~v~~v~~~~~-g~~D----~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~id----~l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+..+|.+.+ ..++ ++.+++.+.. ....+..|++.-.....|.+. -+++|.++|++||+ +++
T Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~-----llI 236 (425)
T PRK07495 162 MPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGI-----LLI 236 (425)
T ss_pred CCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 2344544321 1122 4556777753 223455666654454566443 28999999999999 999
Q ss_pred EecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+|++|.|+... .... ..... -..|.+++ .|.++.++++|+++++.++.+.+... .+ ..++.+. ++
T Consensus 237 ~DEv~tG~gr~-G~~~-a~~~~gv~pDi~tl--sK~l~~G~pigav~~~~~i~~~~~~~-~~----~~T~~~~-----pl 302 (425)
T PRK07495 237 ADEVQTGFART-GKLF-AMEHHEVAADLTTM--AKGLAGGFPLAAVTGRAEIMDAPGPG-GL----GGTYGGN-----PL 302 (425)
T ss_pred EechhhcCCcC-CCce-eecccCCCCCEEee--hhhhcCCccceEEEEcHHHHhccCCC-Cc----CCCCCCC-----HH
Confidence 99999764222 1110 01111 12576655 59888889999999998877655321 11 1122222 34
Q ss_pred HHH---HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCe-EeecCCeeEEEEec--CC----cHH----H----
Q 011842 353 FLW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GIS-AMLNELSSTVVFER--PQ----DEE----F---- 410 (476)
Q Consensus 353 ~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~-~~~~~~~~iv~f~~--~~----~~~----~---- 410 (476)
.+. ++++.+.. .+..++..++.++|+++|++. +.. .+...+ .+..+.. +. +.. +
T Consensus 303 ~~aaa~a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G-l~~~iel~~~~~~~~~~~~~~~~~~~~ 378 (425)
T PRK07495 303 GIAAAHAVLDVIEE---EDLCERANQLGNRLKQRLASLRETVPEIADIRGPG-FMNAVEFNDADSGLPSAEFANRVRLKA 378 (425)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCc-eEEEEEEecCCCCCccHHHHHHHHHHH
Confidence 444 44444422 245566667777777777653 221 122222 2222221 11 111 1
Q ss_pred -hhceeecc-c--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 411 -VRRWQLAC-Q--GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 411 -~~~~~l~~-~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+++.+.. . ++.+|+.....+|+++||.+++.|+++.+++.
T Consensus 379 ~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 379 LEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred HHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 12333322 2 47899988888999999999999999987653
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-10 Score=119.72 Aligned_cols=296 Identities=11% Similarity=0.054 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEe-cCCCchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYA-SRESHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~-s~~~H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+.+++..+. ...+|+++||+||-.|++.++... + +..|+. ...-|.....+..+.+.
T Consensus 92 ~~~~~lae~L~~~~p~~~--~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~ 169 (460)
T PRK06105 92 GPVIDLAEKLVAMAPVPM--SKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHR 169 (460)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccccc
Confidence 556677788888774322 248999999999999999987531 1 334554 44445443333222221
Q ss_pred -------eEEEEeCCCCCc-------------cCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLISGE-------------IDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~~g~-------------~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..+|.....+ ...++|++.+... .+.+..|++.-..+.-|.+.| +++|.++|+
T Consensus 170 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~ 249 (460)
T PRK06105 170 SFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR 249 (460)
T ss_pred ccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 122232211000 1246788888533 345566777655666677776 999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccc-cCCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccC--C
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVK-KAPKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLA--S 337 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~-~~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~--~ 337 (476)
+||+ ++++|+++.|+-....- ....+.. ..|.++++ |.++.+ .++|+++.++++.+.+........ .
T Consensus 250 ~~~~-----llI~DEv~tG~GRtG~~f~~~~~~v--~PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~ 320 (460)
T PRK06105 250 KYDI-----LLVADEVICGFGRTGNMFGCETFGI--KPDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG 320 (460)
T ss_pred HcCC-----eEEEeccccCCCcCchhhhHHhcCC--CCCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCcccc
Confidence 9999 99999999554211100 0001111 26877765 988876 479999999887665532211100 0
Q ss_pred CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCeeEEE--EecCC-----
Q 011842 338 RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELSSTVV--FERPQ----- 406 (476)
Q Consensus 338 ~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~~iv~--f~~~~----- 406 (476)
...|+.+ .++...++++.+..-.-++.+++..++.++|++.|++. +... +...+ .+.. |..+.
T Consensus 321 h~~T~~g-----npl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~~~~ 394 (460)
T PRK06105 321 HGFTASG-----HPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVG-LIAAVELVADKATKTP 394 (460)
T ss_pred cCCCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcccCCC
Confidence 0112222 23443333333321111356777888888888888775 2111 11111 1222 21110
Q ss_pred --c-H----HH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 --D-E----EF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 --~-~----~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
. . .+ .+++.+...++.+|++....+|++|||.+++.|.++.+++.
T Consensus 395 ~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 395 FEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred CCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 0 1 11 12233333357888887777899999999999999887654
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-10 Score=117.42 Aligned_cols=292 Identities=16% Similarity=0.116 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH-HHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV-FKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~-~~~~~~~G~----------- 206 (476)
+.+.++.+.+.+++.-... ...+|+++||+|+..|+..+|....+..|+.-+.+|..+ .-+..+.+-
T Consensus 97 ~~~~~la~~L~~~~p~~~~-~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~ 175 (451)
T PRK06918 97 EPYIELAEKLAALAPGSFD-KKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPF 175 (451)
T ss_pred HHHHHHHHHHHHhCCCCCC-CEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCC
Confidence 5567788888888753211 248999999999999999999764445555545444333 222222221
Q ss_pred --eEEEEeCCC-----CCc-------cCHHHHHHHHHc--CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCC
Q 011842 207 --ECVKVDCLI-----SGE-------IDCADFKAKLLQ--NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFT 266 (476)
Q Consensus 207 --~v~~v~~~~-----~g~-------~D~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~ 266 (476)
.+..+|... .+. ..++.+++.+.. ..+....|++.-....-|.+.| +++|.++|++||+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gi- 254 (451)
T PRK06918 176 APEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGI- 254 (451)
T ss_pred CCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCC-
Confidence 123333210 111 002344544431 2233455555433433454432 8999999999999
Q ss_pred CCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
|+++|++|.++.... ...+...+....|+++ +.|.++.++++|+++.++++.+.+..... ..++.++
T Consensus 255 ----llI~DEV~tg~gr~g-~~~a~~~~~v~pDi~t--~sK~l~~G~pig~v~~~~~i~~~~~~~~~-----~~T~~g~- 321 (451)
T PRK06918 255 ----LFVADEIQTGFARTG-KYFAIEHFDVVPDLIT--VSKSLGAGVPISGVIGRKEIMDESAPGEL-----GGTYAGS- 321 (451)
T ss_pred ----EEEEeccccCcCccC-ceehhHhcCCCCCEEe--eehhhcCCCccEEEEEcHHHHhccCCCCc-----CcCCCcC-
Confidence 999999998764322 1111001111257554 56999889999999999887765532110 1122222
Q ss_pred CChhHHHHHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCe-EeecCCeeEEEEec--C-----CcHH--
Q 011842 347 NGHAPIFLWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GIS-AMLNELSSTVVFER--P-----QDEE-- 409 (476)
Q Consensus 347 ~~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~-~~~~~~~~iv~f~~--~-----~~~~-- 409 (476)
++.+.+ +++.+.... ..++..++.+++.++|++. +.. .+.+.+. ++.+.. + ++..
T Consensus 322 ----~l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~-~~~~~~~~~~~~~~~~~~~~ 393 (451)
T PRK06918 322 ----PLGCAAALAVLDIIEKEN---LNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGA-MCAFELVQDRKTKEPDKTLT 393 (451)
T ss_pred ----HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhCCCceeecccee-EEEEEEccCCCcCCCcHHHH
Confidence 344444 344332233 3444455556666666553 321 1223332 333221 1 1111
Q ss_pred --Hh-----hceeeccc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 410 --FV-----RRWQLACQ---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 410 --~~-----~~~~l~~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
+. ++..+... ++.+|+++...+|+++||.++++|.++.+.++..
T Consensus 394 ~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~~ 447 (451)
T PRK06918 394 ANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYEK 447 (451)
T ss_pred HHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 11 23333222 3789988877789999999999999999887643
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-10 Score=118.06 Aligned_cols=290 Identities=15% Similarity=0.056 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~~G~----------- 206 (476)
+...++.+.+.++.+... ...+|+++||+||-.|+..+|....+..|+.-+.+|.. ...+..+.+.
T Consensus 96 ~~~~~lae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~ 173 (457)
T PRK05639 96 ERAIRVAEKLAEISPIEN--PKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPL 173 (457)
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCC
Confidence 455567778888765332 24899999999999999999976455566665554433 2222222221
Q ss_pred --eEEEEeCCCCCc--------cCH--------HHHHHHHHc---CCCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 --ECVKVDCLISGE--------IDC--------ADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 --~v~~v~~~~~g~--------~D~--------~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
++..+|.....+ -|+ +.|++.|.. .++....|++.-.....|.+.| +++|.++|+
T Consensus 174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~ 253 (457)
T PRK05639 174 MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD 253 (457)
T ss_pred CCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 234454431110 122 345555532 2344556666544555566544 899999999
Q ss_pred HhCCCCCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD 339 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~ 339 (476)
+||+ ++++|+++.|+-- .... . ..+.. ..|.+++ .|.++.++++|+++.++++.+... ..++
T Consensus 254 ~~g~-----llI~DEv~tG~Gr-tG~~~a~~~~gv--~PDiv~~--gK~l~gG~pi~av~~~~~i~~~~~--~~~~---- 317 (457)
T PRK05639 254 EHGI-----LLVMDEVQTGIGR-TGKWFASEWFEV--KPDLIIF--GKGVASGMGLSGVIGRKELMDLTS--GSAL---- 317 (457)
T ss_pred HcCC-----EEEEechhhccCc-CchHHHHHhcCC--CCCEEEe--chhhcCCCcceeEEehHHHHhhcC--CCcc----
Confidence 9999 9999999976421 1111 0 01111 3788885 599987888999999988765211 1121
Q ss_pred CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCe-eEEEEecCC---cHH-
Q 011842 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELS-STVVFERPQ---DEE- 409 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~-~iv~f~~~~---~~~- 409 (476)
.|+.+ .++...++++.+..-.-++.+++..++.++|++.|++. +... +...+. .-+-|..+. +..
T Consensus 318 ~T~~g-----~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~ 392 (457)
T PRK05639 318 LTPAA-----NPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPEL 392 (457)
T ss_pred cCCCc-----CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHH
Confidence 12221 23333334333322122345677777888888888773 3211 111221 111222211 111
Q ss_pred ---H-----hhceeeccc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 410 ---F-----VRRWQLACQ---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 410 ---~-----~~~~~l~~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ .+++.+... ++.+|+.....+|++|||.++++|+++.+...
T Consensus 393 ~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 393 TGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred HHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 1 233444322 47899999999999999999999999987764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-10 Score=117.78 Aligned_cols=292 Identities=12% Similarity=0.024 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEE-ecCCCchHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY-ASRESHYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl-~s~~~H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.++++++... ...+|+++|++|+-.|+..+|....+..|+ ....-|.....+..+.|.
T Consensus 113 ~~~~~lae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~ 190 (459)
T PRK06082 113 ETAIECAEKLTEIAGGEL--NRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLM 190 (459)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCC
Confidence 666778888888875322 248999999999999999998753334444 444445444334333332
Q ss_pred -eEEEEeCCCC-----Ccc------CHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceE
Q 011842 207 -ECVKVDCLIS-----GEI------DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFY 271 (476)
Q Consensus 207 -~v~~v~~~~~-----g~~------D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~ 271 (476)
.+..+|.... ... +++.|++.+.+.. ....|++.-..+..+.+.| +++|.++|++||+ +
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~-----l 264 (459)
T PRK06082 191 AGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEG-GIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNV-----L 264 (459)
T ss_pred CCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCC-CEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCC-----E
Confidence 1233332110 011 2366888886432 3455655433444233444 8999999999999 9
Q ss_pred EEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCCCCcccCCCCC
Q 011842 272 IHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 272 lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
+++|+++.|+--.+ .. . ..+.. ..|.+++ .|.++.++ ++|.++.+++....+.. .+. ..|+.+.
T Consensus 265 lI~DEV~tG~GRtG-~~fa~e~~gv--~PDiv~~--gKgl~gG~~P~~av~~~~~i~~~~~~--~~~---~~T~~gn--- 331 (459)
T PRK06082 265 LIIDEIPNGMGRTG-EWFTHQAYGI--EPDILCI--GKGLGGGLVPIAAMITKDKYNTAAQI--SLG---HYTHEKS--- 331 (459)
T ss_pred EEEechhhCCCccc-hhhHhHhhCC--CCCEEEe--cccccCCCCcceEEEEcHHHHhhccC--CCC---CCCCCcC---
Confidence 99999997642111 11 0 00111 2788874 59998874 89999998876432211 110 0122222
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCe-eEEEEecCC-----cHH----H---
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELS-STVVFERPQ-----DEE----F--- 410 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~-~iv~f~~~~-----~~~----~--- 410 (476)
++...++++.+..-.-++.+++..++.++|++.|++. ++.. +...+. .-+-|..+. +.. +
T Consensus 332 --pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~ 409 (459)
T PRK06082 332 --PLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYR 409 (459)
T ss_pred --HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHH
Confidence 3333333333311111246677788888888888763 3211 112221 112222111 111 1
Q ss_pred --hhceee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 411 --VRRWQL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 411 --~~~~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.+++.+ +..++.+|++....+|++|||.++++++++.+++.+|
T Consensus 410 ~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~~ 455 (459)
T PRK06082 410 CLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAKICQD 455 (459)
T ss_pred HHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhhh
Confidence 122223 2346788887777889999999999999999887544
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-11 Score=119.07 Aligned_cols=212 Identities=16% Similarity=0.048 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH----HHHHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS----VFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v~~~~~ 216 (476)
+..+.+.++.+-|... .+.+++|..|...+++..+. +++.|++...-|.- +.+....+|++...+.++
T Consensus 79 ~~~le~~iaal~ga~~----~l~fsSGmaA~~~al~~L~~--~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~-- 150 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAH----ALLFSSGMAAITVALLHLLP--AGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD-- 150 (409)
T ss_pred hHHHHHHHHHHhCCce----EEEecccHHHHHHHHHHhcC--CCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh--
Confidence 3344556788888764 78889999899999888775 77888877665533 345556779999888877
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|++.++++++++++ +|.+.+|+||+..+.||++|+++|+++|+ .++||..+++.+.- +...
T Consensus 151 ---~~~~~~~~i~~~t~---~V~~ESPsNPll~v~DI~~l~~la~~~g~-----~vvVDnTf~~p~~~--------~pL~ 211 (409)
T KOG0053|consen 151 ---DLKKILKAIKENTK---AVFLESPSNPLLKVPDIEKLARLAHKYGF-----LVVVDNTFGSPYNQ--------DPLP 211 (409)
T ss_pred ---hHHHHHHhhccCce---EEEEECCCCCccccccHHHHHHHHhhCCC-----EEEEeCCcCccccc--------Chhh
Confidence 88899999988776 89999999999999999999999999999 99999998876331 2222
Q ss_pred -cccEEEEcCCCCCCCCC--CceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 297 -PIGSVSVSGHKFVGCPM--PCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 297 -~~Dsi~~s~hK~l~~p~--~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
+||+++-|..||+++-- -.|.++.+ .++.+.+.....++... ..++.+|..++ |.+.+.-++++
T Consensus 212 lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~----------~~p~~~~ll~R--glktl~lRi~~ 279 (409)
T KOG0053|consen 212 LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWC----------EDPFDLFLLSR--GLKTLHLRINK 279 (409)
T ss_pred cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCC----------CCHHHHHHHhc--CcchhhhhHHH
Confidence 39999999999998532 25666665 44554443333333221 23455665544 34555667888
Q ss_pred HHHHHHHHHHHHHhcCCeE
Q 011842 373 CLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~ 391 (476)
..+++..+.+.|++.+...
T Consensus 280 ~~ena~~~A~~Le~~~~v~ 298 (409)
T KOG0053|consen 280 HSENALKIALLLEAHPKVK 298 (409)
T ss_pred HHHHHHHHHHHhhhCCcee
Confidence 8888888888888876543
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7e-10 Score=116.23 Aligned_cols=299 Identities=12% Similarity=0.006 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+...++.+.+.+++.-+. ...+|+++||+|+-.|++.+|... + +..|+.-+.+ |....-+..+.+.
T Consensus 90 ~~~~~lae~L~~~~p~~~--~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~ 167 (459)
T PRK05965 90 EPAIRLAAKLAERAPGSL--NHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHR 167 (459)
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhc
Confidence 555567777877763221 248999999999999999998741 1 3445544444 4332222222221
Q ss_pred -------eEEEEeCCCCC----ccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLISG----EID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~g----~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|..... .-| ++.|++.|.... +....|++.-....-|.+.| +++|.++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~ 247 (459)
T PRK05965 168 GFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRE 247 (459)
T ss_pred ccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 12333322100 012 367888887543 44556666544545565543 8999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCcccc--CCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYL--ASR 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl--~~~ 338 (476)
||+ ++++|+++.|+--.+.-... .+. -..|.++++ |.++.++ ++|.+++++++.+.+....... ...
T Consensus 248 ~gi-----llI~DEV~tGfGRtG~~~a~~~~g--v~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h 318 (459)
T PRK05965 248 LGI-----LFVADEVITGFGRTGPLFACEAEG--VVPDLMTVA--KGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGH 318 (459)
T ss_pred cCC-----EEEEechhccCccCchhhhHhhcC--CCCCeEEec--hhhccCCcceeEEEEcHHHHHHHhccccccccccc
Confidence 999 99999998765211100000 011 127998876 9998885 8999999999876653221100 001
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCe-eEEEEecCC------c
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELS-STVVFERPQ------D 407 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~-~iv~f~~~~------~ 407 (476)
..|+.+. +++..++++.+..-.-++..++..++.++|.+.|++. +... +...+. ..+-|.... +
T Consensus 319 ~~T~~gn-----pl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~ 393 (459)
T PRK05965 319 GYTYSAH-----PVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFD 393 (459)
T ss_pred cCCCCCC-----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCC
Confidence 1122222 3444444443321112345677778888888888774 2111 111111 112122110 0
Q ss_pred --HH----H-----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 408 --EE----F-----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 408 --~~----~-----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.. + .+++.+. ...+.+|+.....+|++|||.+++.|.++.+++..|
T Consensus 394 ~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~~~ 451 (459)
T PRK05965 394 AALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLDDVLAD 451 (459)
T ss_pred chhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 01 1 1233333 234678888888899999999999999999887544
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-10 Score=118.86 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEec-CCCchHHHHH---HH--HcCC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYAS-RESHYSVFKA---AR--MYRM------ 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s-~~~H~S~~~~---~~--~~G~------ 206 (476)
..+.++.+.+.+++... ...+|+++||+|+..|+..+|....+..|+.. ...+.++... .. ..|.
T Consensus 88 ~~~~~la~~l~~~~p~~---~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~ 164 (431)
T PRK06209 88 AIELDAAESFLELIDGA---DMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSA 164 (431)
T ss_pred HHHHHHHHHHHHhCCcc---ceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhc
Confidence 55556777888876321 24899999999999999999876444455443 1222111100 00 0011
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 207 ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 207 ~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
.+..++.+ |+++|+++|++..+....|++....++.+..+.+++|.++|++||+ ++++|+++.|+.. ..
T Consensus 165 ~~~~~~~~-----d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~-----lLI~DEv~tG~~~-~~ 233 (431)
T PRK06209 165 LTVTFRYN-----DIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGA-----LFILDEMITGFRW-HM 233 (431)
T ss_pred cccccCCC-----CHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCC-----EEEEEcccccCCc-Cc
Confidence 02223322 8999999997654445566665445555555569999999999999 9999999866422 11
Q ss_pred ccCCC-CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-----CccccCCCCCcccCCCCC--hhHHHHHHHH
Q 011842 287 KKAPK-VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-----NVEYLASRDATIMGSRNG--HAPIFLWYTL 358 (476)
Q Consensus 287 ~~~~~-~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-----~~~yl~~~~~~~~~sr~~--~~~l~~~~~l 358 (476)
..... +.. ..|.+++ .|.++.++++|+++.++++.+.+.. ...|+. ..+-.+ ....+..+++
T Consensus 234 ~g~~~~~gv--~PDi~t~--gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~------~~T~~~np~~~aaa~a~l 303 (431)
T PRK06209 234 RGAQKLYGI--VPDLSCF--GKALGNGFAVSALAGKREYMELGGLEHTDRERVFLL------STTHGAETHALAAAIATM 303 (431)
T ss_pred chhhHHhCC--Ccceeee--hhhhcCCcccEEEEEHHHHHhhhcccccCCCCceee------ccCCCCCHHHHHHHHHHH
Confidence 11111 111 2677655 5999888889999999887654211 011111 112111 2223333455
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEee-cCC--eeEEEEe-cC---CcHHHhhcee--ecccCCEE-E
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAML-NEL--SSTVVFE-RP---QDEEFVRRWQ--LACQGNIA-H 424 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~-~~~--~~iv~f~-~~---~~~~~~~~~~--l~~~~~~l-R 424 (476)
+.+..++ .+++..++.++|++.|++ .++.... ..+ ..++.+. .+ ....+...+. +-..+-.+ -
T Consensus 304 ~~i~~~~---~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~ 380 (431)
T PRK06209 304 AIYRDED---VIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS 380 (431)
T ss_pred HHHhccC---HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc
Confidence 5553333 456666677777777655 4443211 112 2232221 11 1111111110 00111111 1
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++++..+|++|||+++++|.++.+.+.
T Consensus 381 l~is~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 381 LVVSYAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999988773
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-10 Score=110.72 Aligned_cols=341 Identities=14% Similarity=0.122 Sum_probs=206.7
Q ss_pred CcHHHHHHHHHHHHhcccc--cccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhH----HHHHHHHHHHHHHc
Q 011842 79 AYMAGVLARYRKTLMERTK--HHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSR----QFEVGVLDWFARLW 152 (476)
Q Consensus 79 ~~~~~il~~~~~~~~~~~~--~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~----~le~~~~~~la~l~ 152 (476)
.+-.++++++++....+.. .++|--.+..+.++.+. ...+.|.+.-..+.||.+... +.--+....+++|.
T Consensus 57 ~sE~e~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~---rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT 133 (450)
T COG0403 57 LSEYEALAELKEIASKNKVFTSFIGAGYYDTYTPPVIL---RNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT 133 (450)
T ss_pred CCHHHHHHHHHHHHhcCchhhhhccCcccCCcCcHHHH---HHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 3567899999888766642 25663333333344443 233444433223344433222 22223457789999
Q ss_pred CCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHHHHHc----CCeEEEEeCCCCCccCHHHHHH
Q 011842 153 ELENNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARMY----RMECVKVDCLISGEIDCADFKA 226 (476)
Q Consensus 153 g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~~~~~----G~~v~~v~~~~~g~~D~~~Le~ 226 (476)
|++..+ .-..-++| |.-.|+.++... .+...++++...|+......+-. |++++.++.+ |.++|++
T Consensus 134 Gm~VAN--ASm~DeaT-AaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~ 205 (450)
T COG0403 134 GLDVAN--ASMLDEAT-AAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLES 205 (450)
T ss_pred CCCccc--chhhhhHH-HHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhh
Confidence 998543 22333443 333333333332 23679999999999877665543 6778877776 8888888
Q ss_pred HHHcCCCCcEEEEEeeCCCccc-cccCHHHHHHHHHHhCCCCCceEEEEecC-cccccccccccCCCCCCcccccEEEEc
Q 011842 227 KLLQNKDKPAIINVNIGTTVKG-AVDDLDLVIQTLEESGFTQDRFYIHCDGA-LFGLMMPFVKKAPKVSFKKPIGSVSVS 304 (476)
Q Consensus 227 ~l~~~~~~p~~vv~t~gtt~tG-~id~l~~I~~ia~~~g~~~~~~~lhvD~a-~~g~~~~~~~~~~~~~~~~~~Dsi~~s 304 (476)
+ ... . .+.+++..|. ..| .+.++.+|.+.++++|. +++|=.= .+-.++ + -.+.-++|+.+.+
T Consensus 206 ~-~~~-~-~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~a-----l~~v~aDplaL~LL---~----pPGe~GADIvvG~ 269 (450)
T COG0403 206 A-DDG-D-VFGVLVQYPN-TFGIVEEDLRALIEAAHSAGA-----LVIVAADPLALGLL---K----PPGEFGADIVVGS 269 (450)
T ss_pred c-ccc-C-eEEEEEecCC-CCCccchhHHHHHHHHhhcCC-----EEEEEechhHhhcc---C----CccccCCceEEec
Confidence 8 332 1 2467777776 456 77789999999999998 6654322 111111 1 1222348999999
Q ss_pred CCCCC----CCCCCceeEEeehhhhhhhcCC-----------cccc----------CCCC-CcccCCCCChhHHHHHHHH
Q 011842 305 GHKFV----GCPMPCGVQITRMEHINVLSSN-----------VEYL----------ASRD-ATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 305 ~hK~l----~~p~~~G~l~~~~~~~~~l~~~-----------~~yl----------~~~~-~~~~~sr~~~~~l~~~~~l 358 (476)
.+-++ .+++.+|++.+++++.+.++-. ..|. .... .+=.||.....++.....+
T Consensus 270 ~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~ 349 (450)
T COG0403 270 AQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYA 349 (450)
T ss_pred CcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHH
Confidence 88654 2346689999999987665321 1111 0000 1112333223334444456
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcC--CeEeecCCeeEEEEecCCc--HHH-----hhceeecc-cCCEEEEEEc
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAG--ISAMLNELSSTVVFERPQD--EEF-----VRRWQLAC-QGNIAHVVVM 428 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~iv~f~~~~~--~~~-----~~~~~l~~-~~~~lRv~~~ 428 (476)
.++|.+|++++.++.++++.+|.++|++.+ +..+.......+.++.+.. ..+ ..++.+.. ....+-+++.
T Consensus 350 ~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~~~~~~~ia~t 429 (450)
T COG0403 350 VYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEALLAAAIAGGINLRRVDADTVLIALT 429 (450)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHHHHHHHhcCCceeeecCCceEEEee
Confidence 678999999999999999999999999654 5444343346677777631 111 22333321 2346678899
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~ 446 (476)
..+|++||+.|++++...
T Consensus 430 Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 430 ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 999999999999998754
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-10 Score=115.19 Aligned_cols=269 Identities=12% Similarity=0.062 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-HHc-------CC----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-RMY-------RM---- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~~~-------G~---- 206 (476)
+...++.+.++++.+.+ ..+++++||+|+-.|+.+++....++.|++.+.+|......+ ... +.
T Consensus 66 ~~~~~la~~l~~~~~~~----~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~ 141 (364)
T PRK04013 66 EEKEEMLEELSKWVNYE----YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLV 141 (364)
T ss_pred HHHHHHHHHHHhhcCCC----EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCC
Confidence 44455666677777654 389999999999999999987644467776666554432222 211 11
Q ss_pred -eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc-C---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 207 -ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD-D---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 207 -~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id-~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.+..+|.+ |++.+++.+.++ ...|++.......|.+. | +++|.++|++||+ +++.|+++.|+
T Consensus 142 ~~~~~~~~~-----d~~~l~~~i~~~---~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gi-----llI~DEv~tG~ 208 (364)
T PRK04013 142 PGFKHIPFN-----DVEAAKEAITKE---TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGA-----LLIADEVQSGL 208 (364)
T ss_pred CCcEEecCC-----CHHHHHHHhcCC---cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEechhhcC
Confidence 23334433 788899888643 34666655555545543 4 9999999999999 99999999865
Q ss_pred cccccccC--CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 282 MMPFVKKA--PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 282 ~~~~~~~~--~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
- ....- ..+.+ ..|.++++ |.++.+.++|.++.+.+... ..+ ..|+.+.. .......+.++
T Consensus 209 -R-tG~~~a~~~~gv--~PDiv~~g--K~lggG~P~~a~~~~~~~~~-----~~~----~~T~~gnp--~~~aaa~a~l~ 271 (364)
T PRK04013 209 -R-TGKFLAIEHYKV--EPDIVTMG--KGIGNGVPVSLTLTNFDVER-----GKH----GSTFGGNP--LACKAVAVTLR 271 (364)
T ss_pred -C-CCchhHHHhcCC--CCCEEEec--ccccCCceeEEEEecccccC-----CCc----CCCCCcCH--HHHHHHHHHHH
Confidence 2 11110 01111 26888774 88887888999998765410 001 11222221 11222333444
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCC-eEeecCCeeEEEEecCC-cHHH-----hhceeeccc-CCEEEEEEcCCC
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGI-SAMLNELSSTVVFERPQ-DEEF-----VRRWQLACQ-GNIAHVVVMPNV 431 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~-~~~~~~~~~iv~f~~~~-~~~~-----~~~~~l~~~-~~~lRv~~~~~~ 431 (476)
.+..+++.+.+++. | ..+.. +. ..+...+ .++.+.... ...+ .+++.+... .+.+|+.....+
T Consensus 272 ~i~~~~l~~~~~~~------l-~~l~~-~~v~~vRG~G-l~~gve~~~~~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~i 342 (364)
T PRK04013 272 ILRRERLVEKAGEK------F-IEIKG-ERVVTTRGRG-LMIGIVLKKPVGKYVEELQNRGYLVHTAGQRVIRLLPPLII 342 (364)
T ss_pred HHHhccHHHHHHHH------H-HHhcc-CcceeeeeCc-EEEEEEeCCcHHHHHHHHHhCCcEEeeCCCCEEEEeCCccc
Confidence 44444444333332 2 22222 21 1111122 222222222 1112 234444333 478999888889
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 432 T~edid~~~~~l~~~~~~~ 450 (476)
|++++|.+++.|+++.+..
T Consensus 343 t~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 343 SKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-10 Score=116.49 Aligned_cols=298 Identities=12% Similarity=0.028 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCchHHHH-HHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVFK-AARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~S~~~-~~~~~G~----- 206 (476)
+.+.++.+.+.+++.-+. ...+|+++||+|+-.|++.+|... .+..|+.-+.+|..... +..+.|.
T Consensus 94 ~~~~~lAe~L~~~~p~~~--~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~ 171 (461)
T PRK07482 94 EASITLSKRIIDRAPAGM--SKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQ 171 (461)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhh
Confidence 666677888888764222 238899999999999999998531 13456654444433221 1111110
Q ss_pred -------eEEEEeCCC--C----C-------ccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLI--S----G-------EIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~--~----g-------~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..++... + + .-+++.|++.+... .+....|++.-.....|.+.| +++|.++|+
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~ 251 (461)
T PRK07482 172 HFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK 251 (461)
T ss_pred ccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 122232211 0 0 11467888888533 334556666543444465533 899999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccC--CC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLA--SR 338 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~--~~ 338 (476)
+||+ ++++|+++.|+--...-......+ -..|.+++. |.++.++ ++|.+++++++.+.+........ ..
T Consensus 252 ~~gi-----LlI~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h 323 (461)
T PRK07482 252 KYDI-----LLIADEVVTGFGRLGSMFGSDHYG-IEPDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGH 323 (461)
T ss_pred HhCC-----EEEEeccccCCCcCcchhhHHhcC-CCCCEEEEc--cccccCccccceeeecHHHHHHHhcccccCCcccc
Confidence 9999 999999987652211000000111 127998875 9998886 88999999887665532111000 01
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeE-eecCCe-eEEEEecCC------
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISA-MLNELS-STVVFERPQ------ 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~-~~~~~~-~iv~f~~~~------ 406 (476)
..|+.+ .+++..++++.+..-.-++..++..++.++|.+.|++ .+... +...+. .-+-|....
T Consensus 324 ~~T~~g-----npl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~ 398 (461)
T PRK07482 324 GWTYSG-----HPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPF 398 (461)
T ss_pred CCCCCc-----CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCC
Confidence 112222 2344444444332111123556666777778777764 33321 112221 112232111
Q ss_pred c------HHH-----hhceeec--ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 D------EEF-----VRRWQLA--CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 ~------~~~-----~~~~~l~--~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ ..+ .+++.+. ..++.+|+.....+|++|||.++++|+++.+++.
T Consensus 399 ~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 456 (461)
T PRK07482 399 DPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVDEVL 456 (461)
T ss_pred ChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1222221 1357788888888999999999999999987753
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-10 Score=116.12 Aligned_cols=296 Identities=13% Similarity=0.095 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHH-HHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSV-FKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~-~~~~~~~G~----- 206 (476)
+.+.++.+.+.+++.... ...+|+++||+|+..|++.+|.. ..+..|+.-+.+|..+ .-+....+.
T Consensus 74 ~~~~~lae~L~~~~p~~~--~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 151 (447)
T PRK06917 74 EPAEKLAKKLSDLSPGDL--NWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQ 151 (447)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 556678888888774321 35899999999999999999753 1234566555444333 222222221
Q ss_pred -------eEEEEeCCCCC------------ccCHHHHHHHHHcCC-CCcEEEEEeeCCCcc-ccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLISG------------EIDCADFKAKLLQNK-DKPAIINVNIGTTVK-GAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~~g------------~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~t-G~id~----l~~I~~ia~ 261 (476)
.+..+|..... .-|++.|++.++... +....|++.-..... |.+.| +++|.++|+
T Consensus 152 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~ 231 (447)
T PRK06917 152 RFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICD 231 (447)
T ss_pred cCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHH
Confidence 11222211000 013467788887543 344566665323322 34433 899999999
Q ss_pred HhCCCCCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASR 338 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~ 338 (476)
+||+ ++++|+++.|+--. ... . ..+.. ..|.+++ .|.++.++ ++|+++.++++.+.+......+..
T Consensus 232 ~~g~-----llI~DEv~tGfGRt-G~~~a~~~~gv--~PDi~~~--gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~- 300 (447)
T PRK06917 232 HYDI-----LFIADEVMTGLGRT-GAMFAMEHWGV--EPDIMTL--GKGLGAGYTPIAATVVSDRVMEPILRGSRSIMS- 300 (447)
T ss_pred HcCC-----EEEEechhhCcCcc-cchhhHHhcCC--CCCEEEe--eehhccCCcceEEEEEcHHHHHHHhccCccccc-
Confidence 9999 99999999764211 111 0 01111 2688766 49998776 899999998877665322111110
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCee-EEEEecC------C
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSS-TVVFERP------Q 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~-iv~f~~~------~ 406 (476)
..|+.+. ++...++++.+..-.-++..++..++.++|++.|++. +... +...+.. -+-|..+ .
T Consensus 301 ~~T~~gn-----pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~ 375 (447)
T PRK06917 301 GHTLSAN-----PLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPF 375 (447)
T ss_pred ccCCCCC-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCC
Confidence 0122222 3333333333311111245667777778888887763 3211 1112221 1223211 0
Q ss_pred --cHHH---------hhceeecc--------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 407 --DEEF---------VRRWQLAC--------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 407 --~~~~---------~~~~~l~~--------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+.+. .+++.+.. .++.+|++....+|++|||.++++|.++.+++.+
T Consensus 376 ~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 376 SKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred cchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12333321 1467887777779999999999999999988755
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-10 Score=115.55 Aligned_cols=299 Identities=11% Similarity=0.087 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCchHH-HHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSV-FKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~S~-~~~~~~~G~----- 206 (476)
+.+.++.+.+.++++-+ .-...+|+++||+|+-.|++.||... .+..|+.-+.+|..+ .-+....+-
T Consensus 86 ~~~~~lae~L~~~~~~~-~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~ 164 (449)
T PRK07481 86 PRAIELSYELIDMFAPE-GMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRR 164 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccccc
Confidence 55667788888887421 11248999999999999999998742 234455544444332 222221111
Q ss_pred -------eEEEEeCCCC-----CccCHHH--------HHHHHH-cCCCCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLIS-----GEIDCAD--------FKAKLL-QNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~~-----g~~D~~~--------Le~~l~-~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..++.... +.-|++. ||+.|. ...+.+..|++.-.....|.+-| +++|.++|+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~ 244 (449)
T PRK07481 165 NYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD 244 (449)
T ss_pred ccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH
Confidence 1233332110 0013333 445454 22344566766655556676654 999999999
Q ss_pred HhCCCCCceEEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRD 339 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~~ 339 (476)
+||+ +++.|+++.|+--...-. ...+.. ..|+++++ |.++.++ ++|.+++++++.+.+......- ..
T Consensus 245 ~~g~-----llI~DEV~tGfGRtG~~~a~~~~gv--~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~--~~ 313 (449)
T PRK07481 245 RHGI-----LLIADEVVTGFGRTGSWFGSRGWGV--KPDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFG--GA 313 (449)
T ss_pred HcCC-----EEEEeehhhCcCcCchhhHhhhcCC--CCCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCccc--cc
Confidence 9999 999999987642211000 001111 26888875 9888774 8999999998776653221100 00
Q ss_pred CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeE-EEEecCC------c
Q 011842 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSST-VVFERPQ------D 407 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~i-v~f~~~~------~ 407 (476)
....+|-.+ .++...++++.+..-.-.+..++..++.++|.+.|++. +... +...+..+ +-|..+. +
T Consensus 314 ~~h~~T~~g-npl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~ 392 (449)
T PRK07481 314 IMHGYTYSG-HPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPID 392 (449)
T ss_pred cccCCCCCC-CHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCC
Confidence 000112111 23444444444322122346677777788888887763 2211 11222211 1222110 1
Q ss_pred --HHH---------hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 --EEF---------VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 --~~~---------~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
... .+++.+...++.+|++....+|++|||.++++|.++.+++
T Consensus 393 ~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 393 PSKGYANAVADVARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred chhHHHHHHHHHHHhCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 111 1233333345567776666679999999999999988653
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-10 Score=115.67 Aligned_cols=296 Identities=14% Similarity=0.073 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+++++..+. ...+|+++||+|+..|+.++|... + +..|+.-..+ |.....+....|.
T Consensus 94 ~~~~~lae~L~~~~p~~~--~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~ 171 (456)
T PRK07480 94 PPAIELAAKLAEVAPPGF--NHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHE 171 (456)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhc
Confidence 566677888888774322 248999999999999999998741 2 3455554443 4332222222221
Q ss_pred -------eEEEEeCCCC------C------ccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLIS------G------EIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~------g------~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..++.... . ...++.|++.+.+. .+....|++.-.....|.+.| +++|.++|++
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~ 251 (456)
T PRK07480 172 QGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK 251 (456)
T ss_pred ccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 1222221100 0 01136676666433 344556666544555677665 9999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcC-CccccCCCCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSS-NVEYLASRDA 340 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~-~~~yl~~~~~ 340 (476)
||+ ++++|+++.|+--...-......+ -..|.++++ |.++.++ ++|.+++++++.+.+.. ...+. ...
T Consensus 252 ~g~-----llI~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~--~~~ 321 (456)
T PRK07480 252 YDI-----LLVADEVICGFGRTGEWFGSQHFG-IKPDLMTIA--KGLTSGYIPMGAVGVGDRVAEVLIEEGGEFN--HGF 321 (456)
T ss_pred cCC-----EEEEechhhCCCcCcchhhhhhcC-CCCCeeeee--hhhccCCccceEEEEcHHHHHHHhcCCCCcc--cCC
Confidence 999 999999997642111000000111 126877764 9888775 79999999887766521 11111 112
Q ss_pred cccCCCCChhHHHHHH---HHHHhChhcHHHHHHHH-HHHHHHHHHHHHhc---CCe-EeecCCe-eEEEEecCC-----
Q 011842 341 TIMGSRNGHAPIFLWY---TLNRKGYKGFQKEVQKC-LRNAHYLKDRLLDA---GIS-AMLNELS-STVVFERPQ----- 406 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~---~l~~~g~~g~~~~~~~~-~~~a~~l~~~L~~~---g~~-~~~~~~~-~iv~f~~~~----- 406 (476)
|+.+. ++...+ +|+.+..+ +..++. .++.++|.+.|++. +.. .+...+. .-+-|..+.
T Consensus 322 T~~gn-----pl~~Aaa~a~L~~l~~~---~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~~~~~~~~~ 393 (456)
T PRK07480 322 TYSGH-----PVAAAVALANLRILRDE---GIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELVKDKATRER 393 (456)
T ss_pred CCCcC-----HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEecccccccc
Confidence 33333 344333 44444333 344555 35666777777653 321 1111221 112232111
Q ss_pred --c-----HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 407 --D-----EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 407 --~-----~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
+ ..+ .+++.+...++.+|+.....+|++|||.++++|.++.+++.+..
T Consensus 394 ~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~~ 453 (456)
T PRK07480 394 FEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDELVEKARKALDATAAEL 453 (456)
T ss_pred CcchhhHHHHHHHHHHHCCcEEeecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011 12333333457788777777799999999999999988765543
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=114.77 Aligned_cols=294 Identities=13% Similarity=0.049 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh----C--CCcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV----F--PDGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~----~--p~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+...++.+.+++++..+. ...+|+++||+|+-.|+..+|.. . .+..|+.-..+ |....-+..+.|-
T Consensus 90 ~~~~~lae~L~~~~p~~~--~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~ 167 (466)
T PRK07030 90 EPVIELSERLVKITPPGL--SRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTE 167 (466)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccc
Confidence 556677888888764222 24899999999999999999764 1 23445544444 4333233322221
Q ss_pred -------eEEEEeCCCC-----C-------ccCHHHHHHHHHcCCCCcEEEEEee-CCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLIS-----G-------EIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~-----g-------~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|.... + .-+++.|++.+.+.......|++.- .....|.+.| +++|.++|++
T Consensus 168 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~ 247 (466)
T PRK07030 168 TYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDR 247 (466)
T ss_pred cCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence 1233332210 0 1135677888875555556666654 2444465543 8999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc----cccC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV----EYLA 336 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~----~yl~ 336 (476)
||+ ++++|+++.|+--...-.. ..+.. ..|.+++. |.++.++ ++|.+++++++.+.+.... .+..
T Consensus 248 ~g~-----llI~DEV~TGfGRtG~~~a~~~~gv--~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h 318 (466)
T PRK07030 248 YGV-----HLIHDEIAVGFGRTGTMFACEQAGI--RPDFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLH 318 (466)
T ss_pred cCC-----EEEEeehhhCcCccccchHHHhcCC--CCCEEeee--hhccCCcccceEEEecHHHHHHHhccccccccccc
Confidence 999 9999999866421110000 01111 26888875 9888885 8999999999876653211 1111
Q ss_pred CCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCeeEEEEec--CC----
Q 011842 337 SRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELSSTVVFER--PQ---- 406 (476)
Q Consensus 337 ~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~~iv~f~~--~~---- 406 (476)
..|+.+ .+++..++++.+..-.-++.+++..++.++|++.|++. +... +...+ .++.+.. ..
T Consensus 319 --~~T~~g-----npla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~~~ 390 (466)
T PRK07030 319 --SHSYTG-----NPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTG-MILAIEMVQDKASKT 390 (466)
T ss_pred --CCCCCC-----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEece-eEEEEEeccCccccc
Confidence 112222 23333333333321111345677778888888888764 2111 11111 2222221 11
Q ss_pred ----cH----HH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 ----DE----EF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 ----~~----~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.. .+ .+++.+...++.+|+.....+|++|||.+++.|+++.+++.
T Consensus 391 ~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (466)
T PRK07030 391 PYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFLAEVASEGIDIAT 448 (466)
T ss_pred cCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 00 11 12333333357788888888999999999999999998874
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-10 Score=115.27 Aligned_cols=294 Identities=11% Similarity=0.047 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHcCCCCCccc-EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC----------
Q 011842 139 QFEVGVLDWFARLWELENNEYW-GYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM---------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~-g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~---------- 206 (476)
+...++.+.+.+++.-...... .+++++||+|+-.|++.||....+..|++-..+ |....-+..+.|-
T Consensus 82 ~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~ 161 (442)
T TIGR00709 82 PLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGML 161 (442)
T ss_pred HHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCC
Confidence 5666778888887743211112 445689999999999999976444555554444 4433333333221
Q ss_pred --eEEEEeCCCCCcc--------CH----HHHHHHHHc---CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCC
Q 011842 207 --ECVKVDCLISGEI--------DC----ADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGF 265 (476)
Q Consensus 207 --~v~~v~~~~~g~~--------D~----~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~ 265 (476)
.+..+|.....+. +. +.+++.+.. .......|++.......|.+.| +++|.++|++||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~ 241 (442)
T TIGR00709 162 MPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDI 241 (442)
T ss_pred CCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 2333433211111 11 224444432 1223445666544555565532 8999999999999
Q ss_pred CCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCC
Q 011842 266 TQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS 345 (476)
Q Consensus 266 ~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~s 345 (476)
++++|+++.|+.... +....-.+.-..|.+++ .|.++.++++|+++.+++ .+.+.. ... ..|+.+
T Consensus 242 -----llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~~--gK~l~~G~Pigav~~~~~-~~~~~~--~~~---~~T~~g- 306 (442)
T TIGR00709 242 -----KLILDEVQAGFGRSG-TMFAFEHAGIEPDFVVM--SKAVGGGLPLAVLLIAPE-FDAWQP--AGH---TGTFRG- 306 (442)
T ss_pred -----EEEEeccccCCCCCC-chhHHHHcCCCCcEEEE--cccccCCcccEEEEEchH-HhccCC--CcC---CCCCCc-
Confidence 999999998753321 11000001112688885 588888899999999887 443321 110 122222
Q ss_pred CCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCe-eEEEEecCC-----------cH
Q 011842 346 RNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELS-STVVFERPQ-----------DE 408 (476)
Q Consensus 346 r~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~-~iv~f~~~~-----------~~ 408 (476)
.++++.+++..+..-.-++..++..++.++|.+.|++. +... +...+. .-+-|..+. +.
T Consensus 307 ----npla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~ 382 (442)
T TIGR00709 307 ----NQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDC 382 (442)
T ss_pred ----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcch
Confidence 23444444443321111245567777788888888763 3211 112221 112232111 01
Q ss_pred HH---------hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 409 EF---------VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 409 ~~---------~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.. .+++.+.. .++.+|+.....+|++|||.++++++++.++..
T Consensus 383 ~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 383 ELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred HHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 12333322 257889999889999999999999999887653
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=114.91 Aligned_cols=295 Identities=14% Similarity=0.068 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CC-CcEEEecCC-CchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FP-DGILYASRE-SHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p-~~~Vl~s~~-~H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+++++.... ...+|+++||+|+-.|+..+|.. .+ +..|+.-+. -|.....+..+.|-
T Consensus 99 ~~~~~lae~L~~~~p~~~--~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~ 176 (460)
T PRK06916 99 VPSILLAEKLIEVVPEGL--KKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQ 176 (460)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccccc
Confidence 556678888888774321 24899999999999999999863 12 344554444 44433333333221
Q ss_pred -------eEEEEeCCC-----CC-------ccCHHHHHHHHHcCCCCcEEEEEee-CCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLI-----SG-------EIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~-----~g-------~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|... .+ .-+++.+++.++........|++.- .....|.+.| +++|.++|++
T Consensus 177 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~ 256 (460)
T PRK06916 177 VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTK 256 (460)
T ss_pred ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence 123333210 00 1246778888875545556666654 2445565532 8999999999
Q ss_pred hCCCCCceEEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc----cccC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV----EYLA 336 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~----~yl~ 336 (476)
||+ ++++|+++.|+--. .+. .....+ -..|.+++ .|.++.++ ++|+++.++++.+.+.... .+..
T Consensus 257 ~g~-----llI~DEV~TG~GRt-G~~~a~~~~g-v~PDiv~~--gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~ 327 (460)
T PRK06916 257 YNV-----LFITDEVATGFGRT-GKMFACEHEN-VTPDIMTA--GKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFH 327 (460)
T ss_pred cCC-----EEEeechhhCCCcC-chhhHHHhcC-CCCCeeee--ehhhhcCccccceeeecHHHHHHhhccccccCcccc
Confidence 999 99999998664211 111 000111 12688876 48888784 8999999998776553211 1110
Q ss_pred CCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCe-EeecCCe-eEEEEecCC-----
Q 011842 337 SRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GIS-AMLNELS-STVVFERPQ----- 406 (476)
Q Consensus 337 ~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~-~~~~~~~-~iv~f~~~~----- 406 (476)
..|+.+ .++...++++.+..-.-++..++..++.++|.+.|++. +.. .+...+. .-+-|..+.
T Consensus 328 --~~T~~g-----npl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~ 400 (460)
T PRK06916 328 --GHSYTG-----NPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEP 400 (460)
T ss_pred --CCCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccC
Confidence 112222 23444444443321111345677788888888888774 211 1111221 112222111
Q ss_pred ---c----HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 ---D----EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 ---~----~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ ..+ .+++.+...++.+|+.....+|++|||.++++|+++++++.
T Consensus 401 ~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 401 FEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred CCchhhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 0 011 12333434457888888888999999999999999987654
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-09 Score=113.23 Aligned_cols=294 Identities=12% Similarity=0.055 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.+.+++.-+. ...+|+++||+|+..|++.+|... .+..|+.-+.+ |....-+..+.|-
T Consensus 95 ~~~~~lae~L~~~~p~~~--~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~ 172 (466)
T PRK07036 95 APAAELAAKLAELAPGDL--NHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRT 172 (466)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccc
Confidence 556677777877764221 248999999999999999998641 13455544444 4332222222221
Q ss_pred -------eEEEEeCCCC----Ccc--------CHHHHHHHHHc-CCCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 -------ECVKVDCLIS----GEI--------DCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 -------~v~~v~~~~~----g~~--------D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..+|.... ..+ .++.+++.+.. ..+.+..|++.-.....|.+.| +++|.++|++
T Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~ 252 (466)
T PRK07036 173 EFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR 252 (466)
T ss_pred cccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence 1333332110 011 13456666653 3345667777655666777776 9999999999
Q ss_pred hCCCCCceEEEEecCcccccccccc-cCC-CCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCC----cccc
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVK-KAP-KVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSN----VEYL 335 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~-~~~-~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~----~~yl 335 (476)
||+ ++++|+++.|+--...- ... .+.. ..|+++++ |.++.++ ++|.+++++++.+.+... ..|.
T Consensus 253 ~g~-----llI~DEV~tGfGRtG~~~~~~~~~gv--~PDivt~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~ 323 (466)
T PRK07036 253 YDI-----LYISDEVVTGFGRLGHFFASEAVFGI--QPDIITFA--KGLTSGYQPLGAVIISERLLDVISGPNAKGNVFT 323 (466)
T ss_pred cCC-----EEEEeechhCCCcCchhhhhhhhcCC--CCCEEEEc--cccccCccccEEEEEcHHHHHHHhcccCcCcccc
Confidence 999 99999999664211100 000 0111 26888775 9888774 799999999887665321 0121
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCe-eEEEEecCC----
Q 011842 336 ASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELS-STVVFERPQ---- 406 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~-~iv~f~~~~---- 406 (476)
. ..|+.+ .++...++++.+..-.-++..++..++.++|++.|++. +... +...+. .-+-|..+.
T Consensus 324 ~--~~T~~g-----npl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~ 396 (466)
T PRK07036 324 H--GFTYSG-----HPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKA 396 (466)
T ss_pred c--CCCCCC-----CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccC
Confidence 1 112232 23444444443321111346677778888888888763 2111 111121 112232111
Q ss_pred ----cHH----H-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 407 ----DEE----F-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 407 ----~~~----~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+.. + .+++.+...++.+|++....+|++|||.++++|.++.+.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 397 LLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred CCCchhHHHHHHHHHHHHCCcEEeecCCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 001 1 1233333334667766666679999999999998887665
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=114.55 Aligned_cols=294 Identities=10% Similarity=-0.002 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHcCCC---CCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEecCCCchHH-HHHHHHcCC--
Q 011842 139 QFEVGVLDWFARLWELE---NNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYASRESHYSV-FKAARMYRM-- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~---~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~s~~~H~S~-~~~~~~~G~-- 206 (476)
+...++.+.+.+++.-. .+-...+|+++||+||-.|+..+|... + +..|+.-+.+|... .-+....|.
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~ 186 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPL 186 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcc
Confidence 44567777888776421 011248999999999999999998751 1 34555544444332 222222221
Q ss_pred ----------eEEEEeCCCC-----C-------ccCHHHHHHHHHcCCCCcEEEEEee-CCCccccccC----HHHHHHH
Q 011842 207 ----------ECVKVDCLIS-----G-------EIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVDD----LDLVIQT 259 (476)
Q Consensus 207 ----------~v~~v~~~~~-----g-------~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id~----l~~I~~i 259 (476)
++..+|.... + .-+++.+++.+.........|++.- .....|.+.| ++++.++
T Consensus 187 ~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~l 266 (472)
T PRK08742 187 YRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRAREL 266 (472)
T ss_pred cccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHH
Confidence 1233333211 0 1136778888865444555666643 2344465433 8999999
Q ss_pred HHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCc---ccc
Q 011842 260 LEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNV---EYL 335 (476)
Q Consensus 260 a~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~---~yl 335 (476)
|++||+ ++++|+++.|+-....-......+ -..|.++++ |.++.++ ++|.+++++++.+.+.... .++
T Consensus 267 c~~~gi-----llI~DEV~TGfGRtG~~~a~e~~g-v~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~ 338 (472)
T PRK08742 267 CDAHGA-----FLIADEIATGFGRTGTLFACEQAG-VMPDLLCLS--KGLTGGFLPLSAVLATQQLYDAFLDDSRERAFL 338 (472)
T ss_pred HHHcCC-----EEEEechhhCCCCCccchHHHhcC-CCCCEEEEc--ccccCCCCCcceeeccHHHHHHhhccCccCccC
Confidence 999999 999999987652211000000111 127998885 9888785 8999999998876553210 111
Q ss_pred CCCCCcccCCCCChhHHHHHHH---HHHhChhcHHHHHHHHHHHHHHHHHHHHh---cCCe-EeecCCe-eEEEEecCC-
Q 011842 336 ASRDATIMGSRNGHAPIFLWYT---LNRKGYKGFQKEVQKCLRNAHYLKDRLLD---AGIS-AMLNELS-STVVFERPQ- 406 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~---~g~~-~~~~~~~-~iv~f~~~~- 406 (476)
. ..|+.+. ++...++ ++.+..++ .+++..++.++|.+.++. .+.. .+...+. .-+-|..+.
T Consensus 339 h--~~T~~gn-----pl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~~~~~ 408 (472)
T PRK08742 339 H--SHSYTGN-----PLACAAALATLDIFADDD---VIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELTRGGN 408 (472)
T ss_pred c--CCCCCcc-----HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEeccCcc
Confidence 0 1122222 3443333 44433333 445555566666655544 3321 1111221 112222110
Q ss_pred -------cHH----H-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 407 -------DEE----F-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 407 -------~~~----~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+.. + .+++.+...++.+|+.....+|++|||.+++.|+++++++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 409 KRTPFPPAARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred ccccCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 001 1 1233333346889988888899999999999999998764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-10 Score=125.62 Aligned_cols=291 Identities=17% Similarity=0.072 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcC------------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYR------------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G------------ 205 (476)
+...++.+.+++++.-.. ...+|+++||+||..|++.+|....+. +|......|.....+..+.+
T Consensus 624 ~~~~elae~L~~~~p~~~--~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~ 701 (972)
T PRK06149 624 AAVAEFSERLAALAPDGL--DTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETR 701 (972)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCC
Confidence 455677777888773211 248999999999999999998753444 44454445532211111111
Q ss_pred C-eEEEEeCCCC--C---ccC-----HHHHHHHHH---cCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCC
Q 011842 206 M-ECVKVDCLIS--G---EID-----CADFKAKLL---QNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQ 267 (476)
Q Consensus 206 ~-~v~~v~~~~~--g---~~D-----~~~Le~~l~---~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~ 267 (476)
. .+..++.... + ..| .+++++.++ +..+.+..|++.-..+..|.+.| +++|.++|++||+
T Consensus 702 ~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~-- 779 (972)
T PRK06149 702 PDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG-- 779 (972)
T ss_pred CCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC--
Confidence 0 1233332211 1 112 345555553 23345566766655677788888 9999999999999
Q ss_pred CceEEEEecCcccccccccc--cCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCC
Q 011842 268 DRFYIHCDGALFGLMMPFVK--KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGS 345 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~--~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~s 345 (476)
++++|+++.|+-..+.. ....+.. ..|++++ .|.++.+.++|++++++++.+.+... .++++ |..+
T Consensus 780 ---llI~DEV~tGfGRtG~~~~a~e~~gv--~PDivt~--gK~lg~G~Pl~av~~~~~i~~~~~~~-~~~~s---T~~g- 847 (972)
T PRK06149 780 ---VCIADEVQVGYGRLGHYFWGFEQQGV--VPDIITM--AKGMGNGHPLGAVITRREIAEALEAE-GYFFS---STGG- 847 (972)
T ss_pred ---EEEEEeehhcCCccCccchhhhhcCC--CCCEEEe--cccccCCeeeEEEEEcHHHHhhhccC-CcccC---CCCC-
Confidence 99999999543111100 0000111 2788866 49998888999999999887666432 12211 1211
Q ss_pred CCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEE--Eec------CCcH---HH
Q 011842 346 RNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVV--FER------PQDE---EF 410 (476)
Q Consensus 346 r~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~--f~~------~~~~---~~ 410 (476)
.++...++++.+..-.-++..++..++.++|+++|++. ++...+.....++. |.. +... .+
T Consensus 848 ----nP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i 923 (972)
T PRK06149 848 ----SPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAI 923 (972)
T ss_pred ----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHH
Confidence 23444444443321111245666677778888888764 32211111111222 211 1111 11
Q ss_pred -----hhceeecccC---CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 -----VRRWQLACQG---NIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 -----~~~~~l~~~~---~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+...+ +.+|+.....+|+++||.++++|+++.++
T Consensus 924 ~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 924 CDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 1233333222 67887777779999999999999988753
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-10 Score=113.61 Aligned_cols=292 Identities=13% Similarity=0.078 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCC----Cc---hH-HHHHHHHcCCe
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRE----SH---YS-VFKAARMYRME 207 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~----~H---~S-~~~~~~~~G~~ 207 (476)
....||+. +++++|.+. ++.|..|+.++.+...+... .|++.+.+... .| +- ....+.+.|+.
T Consensus 75 Sv~~Lee~----vael~G~E~----alpthqGRgaE~Il~~~~~~-~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~ 145 (467)
T TIGR02617 75 SYYALAES----VKNIFGYQY----TIPTHQGRGAEQIYIPVLIK-KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT 145 (467)
T ss_pred hHHHHHHH----HHHHhCCce----EEECCCCchHHHHHHHhhcc-cccccccccccccccceEEEEecchHHHHHcCce
Confidence 34556655 667788875 78999999999988777654 25666654443 22 22 23356677888
Q ss_pred EEEEeC----------CCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCc-cccc---cCHHHHHHHHHHhCCCCCceEE
Q 011842 208 CVKVDC----------LISGEIDCADFKAKLLQNK-DKPAIINVNIGTTV-KGAV---DDLDLVIQTLEESGFTQDRFYI 272 (476)
Q Consensus 208 v~~v~~----------~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~-tG~i---d~l~~I~~ia~~~g~~~~~~~l 272 (476)
++.++. ..+|.+|+++|+++|.+.. ..+.++..+..+|. -|.+ +.++++.++|++||+ .+
T Consensus 146 ~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GI-----pl 220 (467)
T TIGR02617 146 ARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDI-----PV 220 (467)
T ss_pred eecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCC-----cE
Confidence 776532 2358999999999998642 11222222222222 2433 678999999999999 99
Q ss_pred EEecCccc---ccccc----cccCCCCCC----cccccEEEEcCCCCCCCCCCceeEEeehh----hhhhhc-CCccccC
Q 011842 273 HCDGALFG---LMMPF----VKKAPKVSF----KKPIGSVSVSGHKFVGCPMPCGVQITRME----HINVLS-SNVEYLA 336 (476)
Q Consensus 273 hvD~a~~g---~~~~~----~~~~~~~~~----~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~----~~~~l~-~~~~yl~ 336 (476)
|.|||--. .++.. ....+..+. ...+|++++|++|-+++|.| |+++.+++ +.+... ....|=.
T Consensus 221 hLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~~~i~~EG 299 (467)
T TIGR02617 221 VMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRTLCVVQEG 299 (467)
T ss_pred EEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHhhcccccC
Confidence 99998522 11110 011111111 14589999999999999886 45555554 222221 1111210
Q ss_pred CCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-------cCCc--
Q 011842 337 SRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-------RPQD-- 407 (476)
Q Consensus 337 ~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-------~~~~-- 407 (476)
. .| .|+.++...-++...|... --.+.+++-....+||.++|.+.|+.++. .+..-|++. +|..
T Consensus 300 f--~t-YGGlagrd~ea~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~f 372 (467)
T TIGR02617 300 F--PT-YGGLEGGAMERLAVGLYDG---MNLDWLAYRINQVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQF 372 (467)
T ss_pred C--cC-cCchhHHHHHHHHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhC
Confidence 0 11 1222222212222222221 22456666777889999999999987766 544444432 2211
Q ss_pred --HHHhhcee------------e-----cc-------cCCEEEEEEcCC-CCHHHHHHHHHHHHHHHHH
Q 011842 408 --EEFVRRWQ------------L-----AC-------QGNIAHVVVMPN-VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 408 --~~~~~~~~------------l-----~~-------~~~~lRv~~~~~-~T~edid~~~~~l~~~~~~ 449 (476)
..+...+. + +. .-..+|+.+... .|.+++|.+++++..+.+.
T Consensus 373 pa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 373 PAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred cHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 11111111 0 11 124678876544 4999999999999888654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-09 Score=109.16 Aligned_cols=296 Identities=14% Similarity=0.109 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----C-CcEEEecCC-CchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----P-DGILYASRE-SHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p-~~~Vl~s~~-~H~S~~~~~~~~G~----- 206 (476)
+...++.+.+.++..-.. ...+|+++||+|+-.|+..+|... + +..|+.-+. -|....-+..+.|-
T Consensus 73 ~~~~~lae~L~~~~p~~~--~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 73 EPAEALADRLVAAAPAGL--EHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 455567777888764221 248999999999999999998751 2 345555444 44332222222211
Q ss_pred -------eEEEEeCCCCCc-c------------CHHHHHHHHHcC-CCCcEEEEEeeCCC-ccccccC----HHHHHHHH
Q 011842 207 -------ECVKVDCLISGE-I------------DCADFKAKLLQN-KDKPAIINVNIGTT-VKGAVDD----LDLVIQTL 260 (476)
Q Consensus 207 -------~v~~v~~~~~g~-~------------D~~~Le~~l~~~-~~~p~~vv~t~gtt-~tG~id~----l~~I~~ia 260 (476)
.+..++...... . .++.|++.+... .+....|++.-... .-|.+.| +++|.++|
T Consensus 151 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc 230 (443)
T PRK07483 151 PFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVC 230 (443)
T ss_pred ccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHH
Confidence 123333211011 0 135677766532 23344565543332 2355544 89999999
Q ss_pred HHhCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCCccccCCC
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASR 338 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~~~yl~~~ 338 (476)
++||+ ++++|+++.|+--...-.. ..+. -..|.++++ |.++.++ ++|.+++++++.+.+.....++..
T Consensus 231 ~~~gi-----llI~DEV~tGfGRtG~~~a~~~~g--v~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h- 300 (443)
T PRK07483 231 DRYGV-----LLILDEVMCGMGRTGTLFACEEDG--VAPDLVTIA--KGLGAGYQPIGAVLASDRIYDAIADGSGFFQH- 300 (443)
T ss_pred HHhCC-----EEEEecceeCcccCcHHHHHhhcC--CCCCeeeeh--hhhccCccccEEEEEcHHHHHHHhcCCCcccc-
Confidence 99999 9999999876522110000 0011 126888875 9888886 899999999887665422111110
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCe-EeecCCe-eEEEEecCC------
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GIS-AMLNELS-STVVFERPQ------ 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~-~~~~~~~-~iv~f~~~~------ 406 (476)
..|+.+. +++..++++.+..-.-.+..++..++.++|++.|++. +.. .+...+. .-+-|..+.
T Consensus 301 ~~T~~gn-----pl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~~~~~~~~~~ 375 (443)
T PRK07483 301 GHTYLGH-----ATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELVADRATKAPF 375 (443)
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEeecccccCCC
Confidence 1122222 3444444443321111345667777788888888652 321 1111221 111121110
Q ss_pred --c----HHH-----hhceeec-cc-------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 --D----EEF-----VRRWQLA-CQ-------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 --~----~~~-----~~~~~l~-~~-------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ ..+ .+++.+. .. ++.+|+.....+|++|||.++++|+++++++.
T Consensus 376 ~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 376 DPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred CchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 111 1233332 11 36889888888899999999999999987654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-09 Score=118.08 Aligned_cols=332 Identities=12% Similarity=0.072 Sum_probs=195.3
Q ss_pred CCcHHHHHHHHHHHHhcc--cccccCCCCcCCcchHHH-HHHHHHhhCCCCCCcccCccc----hhhHHHHHHHHHHHHH
Q 011842 78 EAYMAGVLARYRKTLMER--TKHHLGYPYNLDFDYGAL-AQLQHFSINNLGDPFIESNYG----VHSRQFEVGVLDWFAR 150 (476)
Q Consensus 78 ~~~~~~il~~~~~~~~~~--~~~~~g~p~~~~~~~~~l-~~~l~~~~n~~g~~~~~~~~~----~~~~~le~~~~~~la~ 150 (476)
+.+-.++++.+++....+ ...++|--.+..+.++.+ ..++. +.+.-..+.||. .+.-+.--+...++++
T Consensus 60 ~~sE~e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~----~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~ 135 (954)
T PRK12566 60 ALDEQAALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLE----NPGWYTAYTPYQPEIAQGRLEALLNFQQMTID 135 (954)
T ss_pred CCCHHHHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHh----CchhhhcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 445678888888876665 334667444444444555 33332 322111122332 2333444456789999
Q ss_pred HcCCCCCcccEEEcCCchhHHHHHHHHHHhhC--CCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCccCHHHH
Q 011842 151 LWELENNEYWGYITNCGTEGNLHGILVGREVF--PDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGEIDCADF 224 (476)
Q Consensus 151 l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~--p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~~D~~~L 224 (476)
|.|++..+ .-.-.++|- .-.|+.+++... +...|++++..|+...... +..|++++. ++|
T Consensus 136 LtGm~vaN--ASl~D~atA-~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-----------~~~ 201 (954)
T PRK12566 136 LTGLDLAN--ASLLDEATA-AAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-----------DAV 201 (954)
T ss_pred HhCchhhh--hhhccchhH-HHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-----------cch
Confidence 99998543 223334332 222333333211 2568999999998866544 344667664 344
Q ss_pred HHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCc--ccccccccccCCCCCCcccccEEE
Q 011842 225 KAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL--FGLMMPFVKKAPKVSFKKPIGSVS 302 (476)
Q Consensus 225 e~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~--~g~~~~~~~~~~~~~~~~~~Dsi~ 302 (476)
++.+.++ .+.|++..| +..|.+.|+++|++++++.|. + .++++- +...+ + -.+.-++|+.+
T Consensus 202 ~~~~~~~---~~~v~vq~P-~~~G~i~d~~~i~~~~h~~ga-----l-~~~~~d~laL~ll---~----~Pge~GADI~v 264 (954)
T PRK12566 202 DNLAAHA---VFGALLQYP-DTHGEIRDLRPLIDQLHGQQA-----L-ACVAADLLSLLVL---T----PPGELGADVVL 264 (954)
T ss_pred hhcCCCC---EEEEEEECC-CCceEEccHHHHHHHHHHcCC-----E-EEEEeCHHHHhCC---C----ChhhcCCcEEe
Confidence 4444333 346667665 467999999999999999998 5 445553 11111 1 12223489986
Q ss_pred EcCCCCC----CCCCCceeEEeehhhhhhhcCC-----------ccc----------cCCCC-CcccCCCCChhHHHHHH
Q 011842 303 VSGHKFV----GCPMPCGVQITRMEHINVLSSN-----------VEY----------LASRD-ATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 303 ~s~hK~l----~~p~~~G~l~~~~~~~~~l~~~-----------~~y----------l~~~~-~~~~~sr~~~~~l~~~~ 356 (476)
.+++-++ ++++..|++.+++++.+.++.. ..| +.... .+-.||..+..++....
T Consensus 265 G~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~ 344 (954)
T PRK12566 265 GSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF 344 (954)
T ss_pred eCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 6554321 2335588999999887665321 011 11100 11234433333333334
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHH-----hhceeecc-cCCEEEEEEcC
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEF-----VRRWQLAC-QGNIAHVVVMP 429 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~-----~~~~~l~~-~~~~lRv~~~~ 429 (476)
.+.++|.+|++++.++.+.++.||.+.|++.|+.....+....+.+... ...++ .+++++-. ..+.+.+++..
T Consensus 345 Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~~fF~~~~v~~~~~~~~~~~~a~~~~~n~r~~~~~~~~~s~de 424 (954)
T PRK12566 345 YAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNRHFFDTLTLEVGGAQAAIIESAEAARINLRILGRGRLGVSLDE 424 (954)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCccceEEEEccCCHHHHHHHHHHCCCeeEEeCCCeEEEEeCC
Confidence 4567799999999999999999999999998876544433445555543 22222 23344322 34678899999
Q ss_pred CCCHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELI 444 (476)
Q Consensus 430 ~~T~edid~~~~~l~ 444 (476)
.+|.+||+.+++++.
T Consensus 425 ~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 425 TCDEATVARLFDIFL 439 (954)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999999984
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-09 Score=122.08 Aligned_cols=293 Identities=14% Similarity=0.080 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcC----------C-
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYR----------M- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G----------~- 206 (476)
+.+.++.+.+++++.-+. ...+|+++||+||-.|++.||....+..|++-+.+ |.....+..+.+ .
T Consensus 663 ~~~~~lAe~L~~~~p~~~--~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~ 740 (1013)
T PRK06148 663 DAIVAYAERLTATLPDGL--TVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRP 740 (1013)
T ss_pred HHHHHHHHHHHHhCCCCc--CEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCC
Confidence 556677777877764321 24889999999999999999976444455544444 432221111111 0
Q ss_pred -eEEEEeCCCC--Ccc---C-------HHHHHHHHH---cCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCC
Q 011842 207 -ECVKVDCLIS--GEI---D-------CADFKAKLL---QNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFT 266 (476)
Q Consensus 207 -~v~~v~~~~~--g~~---D-------~~~Le~~l~---~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~ 266 (476)
.+..++.... +.. | .+.+++.+. ...+.+..|++......-|.+.| +++|.++|++||+
T Consensus 741 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~- 819 (1013)
T PRK06148 741 DHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG- 819 (1013)
T ss_pred CCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCC-
Confidence 1222221100 001 1 245666664 22344566766655666677766 9999999999999
Q ss_pred CCceEEEEecCcccccccccc--cCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccC
Q 011842 267 QDRFYIHCDGALFGLMMPFVK--KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMG 344 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~--~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~ 344 (476)
++++|+++.|+---+.. ....+.+ ..|++++. |.++.++++|.++++++..+.+.....|. .|+.+
T Consensus 820 ----llI~DEVqtGfGRtG~~~~a~e~~gv--~PDivt~g--K~lggG~Plgav~~~~ei~~~~~~g~~~~----~Tf~g 887 (1013)
T PRK06148 820 ----VCIADEVQVGFGRVGSHWWAFETQGV--VPDIVTMG--KPIGNGHPMGAVVTTREIADSFDNGMEYF----NTFGG 887 (1013)
T ss_pred ----EEEEEecccCCCCCCCcchhhhhcCC--Ccceeeec--ccccCCcceEEEEEcHHHHhhccCCCccc----cCCCC
Confidence 99999999664211100 0000111 26888774 99988899999999988876664321121 22332
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeE-EEEecC-----CcHH----
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSST-VVFERP-----QDEE---- 409 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~i-v~f~~~-----~~~~---- 409 (476)
. +++..++++.+..-.-++..++..++.++|+++|++. +... +...+..+ +-|..+ .+..
T Consensus 888 n-----pla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~ 962 (1013)
T PRK06148 888 N-----PVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARY 962 (1013)
T ss_pred C-----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHH
Confidence 2 3333333333321111245667777888888888764 3211 11122111 122211 1111
Q ss_pred H-----hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 410 F-----VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 410 ~-----~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+ .+++.+.. .++.+|+.....+|++|||.++++|+++.++..
T Consensus 963 i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 963 VKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred HHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 1 12333432 247899998888999999999999999887643
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-09 Score=108.99 Aligned_cols=289 Identities=12% Similarity=-0.002 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCC-CchHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRE-SHYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~-~H~S~~~~~~~~G~----- 206 (476)
+...++.+.+.++.+.+. ...+|+++||+|+-.|+..+|... .+..|+.-+. -|....-+..+.+-
T Consensus 83 ~~~~~lae~L~~~~p~~~--~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 160 (422)
T PRK05630 83 EPAIKLTRKLLNLTDNGL--DHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMH 160 (422)
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccccc
Confidence 445567777777764222 248999999999999999998742 1344554444 44332222222221
Q ss_pred --------eEEEEeCCCCCccC-------HHHHHHHHHcCCCCcEEEEEeeC-CCccccc----cCHHHHHHHHHHhCCC
Q 011842 207 --------ECVKVDCLISGEID-------CADFKAKLLQNKDKPAIINVNIG-TTVKGAV----DDLDLVIQTLEESGFT 266 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D-------~~~Le~~l~~~~~~p~~vv~t~g-tt~tG~i----d~l~~I~~ia~~~g~~ 266 (476)
....+|.......+ .+.+++.+.+ ....|++.-. ....|.+ +.+++|.++|++||+
T Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~- 236 (422)
T PRK05630 161 SLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE---TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDI- 236 (422)
T ss_pred ccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh---ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCC-
Confidence 12333332111112 2344444442 2345555431 3334443 458999999999999
Q ss_pred CCceEEEEecCcccccccccccC--CCCCCcccccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCC---ccccCCCCC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKA--PKVSFKKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSN---VEYLASRDA 340 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~--~~~~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~---~~yl~~~~~ 340 (476)
++++|+++.|+-. ..... ..+. -..|++++ .|.++.++ ++|+++++++..+.+... ..+. ...
T Consensus 237 ----llI~DEv~tG~Gr-tG~~~a~~~~g--v~PDi~t~--gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~--h~~ 305 (422)
T PRK05630 237 ----LLIADEIATGFGR-TGELFATLAAG--VTPDIMCV--GKALTGGFMSFAATLCTDKVAQLISTPNGGGALM--HGP 305 (422)
T ss_pred ----EEEEecceeCCCc-CchhhHHHhcC--CCCCeeee--echhhcCccccceeeccHHHHHHHhccCCCCccc--cCC
Confidence 9999999865421 11110 0011 12688865 59987664 789999998876665321 0111 012
Q ss_pred cccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC-eEee--cCCeeEEEEec--CC-cHHH----
Q 011842 341 TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI-SAML--NELSSTVVFER--PQ-DEEF---- 410 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~-~~~~--~~~~~iv~f~~--~~-~~~~---- 410 (476)
|+.+.. .......++++.+..+ +..++..++.++|++.|++..- ..+. .-...++.+.. +. ...+
T Consensus 306 T~~g~P--la~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~ 380 (422)
T PRK05630 306 TFMANP--LACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAA 380 (422)
T ss_pred CCcCCH--HHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHH
Confidence 222221 1122233344444332 3456777788888887765311 1111 11123333332 21 1122
Q ss_pred -hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 -VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 -~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+...++.+|+.....+|++|||.+++.|+++.+.
T Consensus 381 ~~~Gl~~~~~g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 381 VDHGVWLRPFGRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred HHCCeEEEecCCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 234444444678888888889999999999999988753
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-09 Score=101.14 Aligned_cols=343 Identities=13% Similarity=0.051 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhcccccccCCCCcCCcc-------hHHHHHHHHHh-hCCCCCCcccCccchhhHHHHHHHHHHHHHHc
Q 011842 81 MAGVLARYRKTLMERTKHHLGYPYNLDFD-------YGALAQLQHFS-INNLGDPFIESNYGVHSRQFEVGVLDWFARLW 152 (476)
Q Consensus 81 ~~~il~~~~~~~~~~~~~~~g~p~~~~~~-------~~~l~~~l~~~-~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~ 152 (476)
...+++++.+.+...-...+| -.|+... ....++++... .......+.. +.+...+-+++...+.+-+
T Consensus 16 i~~lMdDl~d~Lrt~g~imLg-gGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~---pQG~~~li~ala~~l~~~y 91 (417)
T COG3977 16 ITQLMDDLNDGLRTPGAIMLG-GGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDG---PQGKAVLIDALAKMLRREY 91 (417)
T ss_pred HHHHHHHHHhhccCCCceeeC-CCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCC---CcchhHHHHHHHHHHHHHh
Confidence 456666666666544444555 2233222 12333443322 1111112222 2256789999999999999
Q ss_pred CCCCCcccEEEcCCchhHHHHHHHHHHhhCCC----cEEEecCCCchHHHHHHHHcCCeEEEEe----CCC----CCccC
Q 011842 153 ELENNEYWGYITNCGTEGNLHGILVGREVFPD----GILYASRESHYSVFKAARMYRMECVKVD----CLI----SGEID 220 (476)
Q Consensus 153 g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~----~~Vl~s~~~H~S~~~~~~~~G~~v~~v~----~~~----~g~~D 220 (476)
|+.-....+.+|+|+..+.++.....-.++++ .+++--.++|..+..++---. -.+.+. ..+ ..++|
T Consensus 92 gwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d-~fVs~kP~iel~~~g~FKY~vD 170 (417)
T COG3977 92 GWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEED-LFVSAKPNIELLPAGQFKYHVD 170 (417)
T ss_pred CCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCcc-ceeeccCCcccccccceeeccC
Confidence 99866667999999999988776654332222 233333444433322210000 011111 111 24678
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC-CCCCCcc
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKK 296 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~ 296 (476)
.++|+ +.+.+. +|+++-+|++||.+ +.+.+|..+|++||+ .+++|.|||..+ |..... ...-+-+
T Consensus 171 F~~l~--i~e~~g---~ic~SRPtNPTGNVlTdeE~~kldalA~~~gi-----PliIDnAYg~PF-P~iifsd~~~~w~~ 239 (417)
T COG3977 171 FEHLH--IGESTG---AICVSRPTNPTGNVLTDEELAKLDALARQHGI-----PLIIDNAYGVPF-PGIIFSDATPLWNE 239 (417)
T ss_pred HHHcc--cccccc---eEEecCCCCCCCCcccHHHHHHHHHHhhhcCC-----cEEEecccCCCC-CceecccccccCCC
Confidence 88775 334554 88999999999998 468889999999999 999999997532 211110 0011111
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH----
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK---- 372 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~---- 372 (476)
-..++.|..|....+.+||+++.++++++++...... -++.-+|-+.+ ++. ..+....+.++.++
T Consensus 240 -NiilC~SLSK~GLPG~R~GIiIane~viqaitnmn~i-----isLap~~~G~A-ia~----~mie~gdl~rlseqVIrP 308 (417)
T COG3977 240 -NIILCMSLSKLGLPGSRCGIIIANEKVIQAITNMNGI-----ISLAPGRMGPA-IAA----EMIESGDLLRLSEQVIRP 308 (417)
T ss_pred -CEEEEeehhhcCCCCcceeEEEccHHHHHHHHhccce-----eeecCCCccHH-HHH----HHhhcchHHHHHHHhhhH
Confidence 3568899999999899999999999987766432211 12333443332 211 11111111111111
Q ss_pred -HHHHHH----HHHHHHHhcCCeEeecCCeeEEEEe----cCC-cHHHhhcee------e-------------cccCCEE
Q 011842 373 -CLRNAH----YLKDRLLDAGISAMLNELSSTVVFE----RPQ-DEEFVRRWQ------L-------------ACQGNIA 423 (476)
Q Consensus 373 -~~~~a~----~l~~~L~~~g~~~~~~~~~~iv~f~----~~~-~~~~~~~~~------l-------------~~~~~~l 423 (476)
.++.++ .|+..|-+.+.. +..|...|..|- .|- +.++.+++. + +....++
T Consensus 309 FY~~~~q~~~~~l~~~lp~~~~~-iHkpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~ 387 (417)
T COG3977 309 FYRNRVQTTIAILRRYLPEYRCL-IHKPEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCM 387 (417)
T ss_pred HHHHHHHHHHHHHHHhcCcccee-eecCCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceE
Confidence 122222 234444433432 334444454432 222 233333221 1 2234678
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
|++.. -+++.|++=+.+|.+..++.+++
T Consensus 388 Rmn~~--~~~~~ie~Gva~lae~ve~~yq~ 415 (417)
T COG3977 388 RMNYV--PEPEKIEKGVAILAEEVERAYQE 415 (417)
T ss_pred EEecC--CCHHHHHHHHHHHHHHHHHHHhc
Confidence 87654 46888999999998888887754
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=107.35 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH-HcC-----------
Q 011842 139 QFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYR----------- 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~-~~G----------- 205 (476)
+.+.++.+.+.+++...... ...+++++||+|+-.|++.+|....+..|+.-+.+|..+...+. +.|
T Consensus 101 ~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~ 180 (459)
T PRK06931 101 PLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGL 180 (459)
T ss_pred HHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCC
Confidence 66667788888877432111 12355689999999999999976555566665555544332222 211
Q ss_pred -CeEEEEeCCCCC--------ccCHHHH----HHHHHc---CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCC
Q 011842 206 -MECVKVDCLISG--------EIDCADF----KAKLLQ---NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGF 265 (476)
Q Consensus 206 -~~v~~v~~~~~g--------~~D~~~L----e~~l~~---~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~ 265 (476)
..+..+|..... .-+.+.+ ++.+.+ ..+....|++.-....-|.+.| +++|.++|++||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~ 260 (459)
T PRK06931 181 MPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGI 260 (459)
T ss_pred CCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 123334432111 1123333 333332 1233455666433444565543 8999999999999
Q ss_pred CCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccC
Q 011842 266 TQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMG 344 (476)
Q Consensus 266 ~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~ 344 (476)
++++|+++.|+--...-.. ..+.. ..|.++++ |.++.++++|+++.+++. +.+.. .. ...|+.+
T Consensus 261 -----LlI~DEV~tGfGRtG~~~a~~~~gv--~PDivt~g--K~l~gG~Pi~av~~~~~~-~~~~~--~~---~~~T~~g 325 (459)
T PRK06931 261 -----LLIVDEVQAGFARTGKMFAFEHAGI--EPDIIVMS--KAVGGGLPLAVLGIKKEF-DAWQP--GG---HTGTFRG 325 (459)
T ss_pred -----EEEEecchhcCCcCchHHHhhhcCC--CCCEEEec--ccccCCcceeeeeeHHHH-hhccC--CC---CCCCCCC
Confidence 9999999876521110000 01111 27888875 888888999998887653 44321 11 1122332
Q ss_pred CCCChhHHHHHHH---HHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEE--EecCC---------
Q 011842 345 SRNGHAPIFLWYT---LNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVV--FERPQ--------- 406 (476)
Q Consensus 345 sr~~~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~--f~~~~--------- 406 (476)
. +++..++ ++.+..+ +..++..++.++|.+.|++. ++..-......++. |..+.
T Consensus 326 n-----pla~aaala~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~ 397 (459)
T PRK06931 326 N-----QLAMATGLTTLKILKEE---NLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSY 397 (459)
T ss_pred C-----HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccC
Confidence 2 3443443 4433333 35566667777777777653 32111111112222 21110
Q ss_pred --cHHH---------hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 407 --DEEF---------VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 407 --~~~~---------~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+... .+++.+.. .++.+|+.....+|++|||.++++|+++.+.+-|
T Consensus 398 ~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 398 PADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred CccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 1111 12333322 2478999999999999999999999999877654
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-08 Score=105.93 Aligned_cols=292 Identities=13% Similarity=0.048 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHcCCCCC-cccEEEc-CCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcC----------
Q 011842 139 QFEVGVLDWFARLWELENN-EYWGYIT-NCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYR---------- 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~-~~~g~~t-~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G---------- 205 (476)
+.+.++.+.+.+++.-+-. ....+|+ ++||+|+-.|++.+|....+..|+.-+.+ |....-+..+.|
T Consensus 106 ~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~ 185 (464)
T PRK06938 106 PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGA 185 (464)
T ss_pred HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCC
Confidence 4555666667766532110 0135555 79999999999999975444555554444 433222222221
Q ss_pred C--eEEEEeCCCCC------------ccCHHHHHHHHHcCC---CCcEEEEEeeCCCccccccC----HHHHHHHHHHhC
Q 011842 206 M--ECVKVDCLISG------------EIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAVDD----LDLVIQTLEESG 264 (476)
Q Consensus 206 ~--~v~~v~~~~~g------------~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g 264 (476)
. ++..+|..... ..+++.+++.+.+.. ..+..|++.-....-|.+.| ++++.++|++||
T Consensus 186 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g 265 (464)
T PRK06938 186 LLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG 265 (464)
T ss_pred CCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 1 23344432111 124677888886432 23456666533444465543 899999999999
Q ss_pred CCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCccc
Q 011842 265 FTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIM 343 (476)
Q Consensus 265 ~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~ 343 (476)
+ ++++|+++.|+--...-.. ..+.+ ..|.++++ |.++.+.++|.++.+++. +.+.. .+. ..|+.
T Consensus 266 i-----LlI~DEV~tGfGRtG~~~a~e~~gv--~PDiv~~g--KglggG~PlsAv~~~~~~-~~~~~--~~~---~~T~~ 330 (464)
T PRK06938 266 I-----PLIVDEIQSGFGRTGKMFAFEHAGI--IPDVVVLS--KAIGGSLPLAVVVYREWL-DTWQP--GAH---AGTFR 330 (464)
T ss_pred C-----EEEEeccccCCCcCcHHHHHHhcCC--CCCEEEee--ccccCCCceEEEeehhHh-hccCC--CCC---CCCCC
Confidence 9 9999999876521110000 01121 26988875 888888999999998764 43321 111 11222
Q ss_pred CCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCee-EEEEecCC-----------
Q 011842 344 GSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSS-TVVFERPQ----------- 406 (476)
Q Consensus 344 ~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~-iv~f~~~~----------- 406 (476)
+. +++..++++.+..-.-++..++..++.++|.+.|++. ++.. +...+.. -+-|..+.
T Consensus 331 gn-----pla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~ 405 (464)
T PRK06938 331 GN-----QMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPA 405 (464)
T ss_pred cC-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCc
Confidence 22 3444444444322112345667777778888887663 3211 1122221 12222110
Q ss_pred cHH----H-----hhceeecc---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 407 DEE----F-----VRRWQLAC---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 407 ~~~----~-----~~~~~l~~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+.. + .+++.+.. .++.+|+.....+|++|||.++++++++.+.+
T Consensus 406 ~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 406 NGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred cHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 111 1 12333322 24788988888899999999999999988654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-09 Score=107.47 Aligned_cols=283 Identities=13% Similarity=0.077 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC---------------------------CCcEEEecCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF---------------------------PDGILYASRE 192 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~---------------------------p~~~Vl~s~~ 192 (476)
+.+.+.+.+.++..-+. ...+|+++|++||-.|+..|+... ++..|+.-..
T Consensus 106 la~~l~~~l~~~~p~~~--~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~ 183 (464)
T TIGR00699 106 WAKILKEGILKVAPKGQ--DQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKG 183 (464)
T ss_pred HHHHHHHhHHhhCCCCc--CEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECC
Confidence 44444333344543111 248999999999999999997531 0124555444
Q ss_pred C-chHHHHHHHHcCC-----------eEEEEeCCC-C-------------CccCHHHHHHHHHcCCCCcEEEEEeeCCCc
Q 011842 193 S-HYSVFKAARMYRM-----------ECVKVDCLI-S-------------GEIDCADFKAKLLQNKDKPAIINVNIGTTV 246 (476)
Q Consensus 193 ~-H~S~~~~~~~~G~-----------~v~~v~~~~-~-------------g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~ 246 (476)
+ |.....+....|- ....+|... . ..-+++.|++++.+.......|++.-....
T Consensus 184 syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~ 263 (464)
T TIGR00699 184 AFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSE 263 (464)
T ss_pred CcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCC
Confidence 4 4433333333221 112222211 0 012467788888765445566777655777
Q ss_pred cccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCCCCCCCCceeEEe
Q 011842 247 KGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQIT 320 (476)
Q Consensus 247 tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~ 320 (476)
.|.+.| +++|.++|++||+ ++++|+++.|+-. .... . ..+.+....|.++++ |.+++ .|+++.
T Consensus 264 ~G~~~~~~~yl~~lr~lc~~~g~-----lLI~DEV~tGfGr-tG~~fa~e~~gv~~~PDi~t~g--K~lg~---gG~~~~ 332 (464)
T TIGR00699 264 GGDNHASPDFFRKLRDITKKHNV-----AFIVDEVQTGVGA-TGKFWAHEHWNLDDPPDMVTFS--KKFQT---AGYFFH 332 (464)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCC-----EEEEeeeeeCCCC-CcchhHHHhcCCCCCCCEEEeh--hhhcc---CCcccc
Confidence 788877 9999999999999 9999999866421 1110 0 012222237887764 88752 233333
Q ss_pred ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----C-CeEeec-
Q 011842 321 RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----G-ISAMLN- 394 (476)
Q Consensus 321 ~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g-~~~~~~- 394 (476)
+ +.+.. ....+.. .|+.+.. .......++++.+..+ +..++..++.++|.+.|++. + ...-+.
T Consensus 333 ~-~~~~~--~~~~~~~---~T~~gnp--~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg 401 (464)
T TIGR00699 333 D-PAFRP--NKPYRQF---NTWMGDP--SRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG 401 (464)
T ss_pred c-hhccC--CCCcccc---cCCCCCH--HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc
Confidence 3 21110 0011110 1222111 1122222344444332 35556666667777777664 3 111112
Q ss_pred -CCeeEEEEecCCcH---HH-----hhceeecccC-CEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 395 -ELSSTVVFERPQDE---EF-----VRRWQLACQG-NIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 395 -~~~~iv~f~~~~~~---~~-----~~~~~l~~~~-~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
....++.+..++.. .+ .+++.+...+ +.+|+.....+|++|||.++++|.++
T Consensus 402 ~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 402 KGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred cCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 23455555554321 11 2333443333 78999999999999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-09 Score=108.00 Aligned_cols=284 Identities=13% Similarity=0.045 Sum_probs=147.7
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC---------C---CcEEEecCCC-chHHHHHHHHcCCe-E
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF---------P---DGILYASRES-HYSVFKAARMYRME-C 208 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~---------p---~~~Vl~s~~~-H~S~~~~~~~~G~~-v 208 (476)
++.+.++++.+.+ .-...+|+++||+|+-.|+..+|... + +..|+.-+.+ |....-+....|-. .
T Consensus 89 ~l~~~l~~~~~~~-~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~ 167 (431)
T TIGR03251 89 RFVDTFARVLGDP-ALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPR 167 (431)
T ss_pred HHHHHHHHhcCCC-CcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccc
Confidence 4555566654211 11248899999999999999998531 1 2455555544 43333333222211 0
Q ss_pred E----------EE--e-----CCCCC--------ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHHHHHH
Q 011842 209 V----------KV--D-----CLISG--------EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDLVIQT 259 (476)
Q Consensus 209 ~----------~v--~-----~~~~g--------~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~I~~i 259 (476)
. .+ | .+... .-+++++++.+......+..|++.-.....|.+ +.+++|.++
T Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~l 247 (431)
T TIGR03251 168 KTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRAL 247 (431)
T ss_pred cccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHH
Confidence 0 01 1 00000 123556677776555566777776556666765 359999999
Q ss_pred HHHhCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC
Q 011842 260 LEESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR 338 (476)
Q Consensus 260 a~~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~ 338 (476)
|++||+ ++++|+++.|+-..+.-.. ..+.. ..|.++++ |.+ ..+|++ .+++..+............
T Consensus 248 c~~~g~-----llI~DEV~tG~GrtG~~~a~~~~gv--~PDi~~~g--K~~---~~~g~~-~~~~i~~~~~~~~~~~~~~ 314 (431)
T TIGR03251 248 CDEHDA-----LLIFDEVQTGVGLTGTAWAYQQLGV--QPDIVAFG--KKT---QVCGIM-AGRRVDEVADNVFAVPSRL 314 (431)
T ss_pred HHHcCC-----EEEEecchhccCccchHHHHHhcCC--CCCEEEec--ccC---ccceEE-ecchHHHhhhhcccCcccc
Confidence 999999 9999999986422110000 00111 37888764 654 224444 4443211110000000001
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----C-CeEeecCCeeEEEEecCCcH---HH
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----G-ISAMLNELSSTVVFERPQDE---EF 410 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g-~~~~~~~~~~iv~f~~~~~~---~~ 410 (476)
..|+.+.. .......++++.+..++ ..++..++.++|.++|++. + +..-......++.+..++.. .+
T Consensus 315 ~~T~~gnp--l~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~ 389 (431)
T TIGR03251 315 NSTWGGNL--VDMVRATRILEIIEEER---LVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEV 389 (431)
T ss_pred CCCCCCCH--HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHH
Confidence 12222221 11222223444443333 4455556666676666552 3 22111222344445544321 11
Q ss_pred -----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 411 -----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 411 -----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
.+++.+. ...+.+|++....+|++|||+++++|.+
T Consensus 390 ~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 390 IRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred HHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 2334443 3347899999999999999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=106.13 Aligned_cols=290 Identities=13% Similarity=0.038 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----------C-CcEEEecCCC-chHHHHHHHHcC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----------P-DGILYASRES-HYSVFKAARMYR 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----------p-~~~Vl~s~~~-H~S~~~~~~~~G 205 (476)
+...++.+.++++.+ +..-...+|+++||+||-.|+..+|... + +..|+.-+.+ |....-+..+.|
T Consensus 92 ~~~~~la~~l~~~~~-p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 92 VEMARFVDTFARVLG-DPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred HHHHHHHHHHHhhcC-CCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcC
Confidence 344456666777652 1111248999999999999999997531 1 2445555544 433322332322
Q ss_pred CeE-----------EEEeCC----C-CC----------ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc----cCHHH
Q 011842 206 MEC-----------VKVDCL----I-SG----------EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV----DDLDL 255 (476)
Q Consensus 206 ~~v-----------~~v~~~----~-~g----------~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i----d~l~~ 255 (476)
... ..++.. + .+ .-|++.+++.+.+....+..|++.-....-|.+ +-+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~ 250 (443)
T PRK08297 171 TDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAA 250 (443)
T ss_pred CcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHH
Confidence 110 001100 0 00 013566777887665666777776556666766 44999
Q ss_pred HHHHHHHhCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhc--CC-
Q 011842 256 VIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS--SN- 331 (476)
Q Consensus 256 I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~--~~- 331 (476)
|.++|++||+ ++++|+++.|+-....-.. ..+.. ..|.+++ .|.+. .|.++++++....+. ..
T Consensus 251 lr~lc~~~g~-----llI~DEV~tGfGRtG~~~a~~~~gv--~PDiv~~--gK~l~----~~a~l~~~~i~~~~~~~~~~ 317 (443)
T PRK08297 251 MRELCDEHDA-----LLIFDEVQTGVGLTGTAWAYQQLGV--RPDIVAF--GKKTQ----VCGIMAGRRVDEVEDNVFAV 317 (443)
T ss_pred HHHHHHHcCC-----EEEEechhhccCccchHHHHHhcCC--CCCEEEe--ccccc----ccceecchHHHHhhhhhccC
Confidence 9999999999 9999999976422110000 00111 2688875 48763 344455554321110 00
Q ss_pred ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeEEEEecCC
Q 011842 332 VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISA-MLNELSSTVVFERPQ 406 (476)
Q Consensus 332 ~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~iv~f~~~~ 406 (476)
..+. ..|+.+ .++...++++.+..-.-++.+++..++.++|.++|++. +... -......++.+..++
T Consensus 318 ~~~~---~~T~~g-----npl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~ 389 (443)
T PRK08297 318 SSRI---NSTWGG-----NLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPT 389 (443)
T ss_pred cccc---CCCCCc-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecC
Confidence 0010 112222 23444444444321112346667777888888887763 3221 112223444444433
Q ss_pred c---HHH-----hhceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 407 D---EEF-----VRRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 407 ~---~~~-----~~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. ..+ .+++.+. ...+.+|++....+|++|||.++++|.++.+++
T Consensus 390 ~~~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 390 TADRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 2 112 2333343 334678998888899999999999999987654
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.5e-09 Score=105.00 Aligned_cols=298 Identities=14% Similarity=0.084 Sum_probs=165.8
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CC-CcEEEecCCCc-hHHHHHHHHcCC--------
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FP-DGILYASRESH-YSVFKAARMYRM-------- 206 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p-~~~Vl~s~~~H-~S~~~~~~~~G~-------- 206 (476)
.++.+.|+++..-. +-...+||+|||+|+-+|+.+++.+ .| +..+|.-..+| .+-.-++.+.|.
T Consensus 90 ~~LA~~L~~~aP~~-~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~ 168 (449)
T COG0161 90 IELAEKLAELAPEG-GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFY 168 (449)
T ss_pred HHHHHHHHHhCCCC-CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhc
Confidence 45667777777611 0123999999999999999999874 23 23455555544 333333333331
Q ss_pred -----eEEEEeCCC------CCc------cCHHHHHHHHHcCC-CCcEEEEEeeCC-CccccccC----HHHHHHHHHHh
Q 011842 207 -----ECVKVDCLI------SGE------IDCADFKAKLLQNK-DKPAIINVNIGT-TVKGAVDD----LDLVIQTLEES 263 (476)
Q Consensus 207 -----~v~~v~~~~------~g~------~D~~~Le~~l~~~~-~~p~~vv~t~gt-t~tG~id~----l~~I~~ia~~~ 263 (476)
.+..+|... ++. -+.+.||+.|.+.. .+...+++.-.- ...|.+-| +++|.++|++|
T Consensus 169 ~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky 248 (449)
T COG0161 169 DPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY 248 (449)
T ss_pred cccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc
Confidence 222333321 111 23678888888865 555556664333 33566644 89999999999
Q ss_pred CCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcc
Q 011842 264 GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATI 342 (476)
Q Consensus 264 g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~ 342 (476)
|+ ++++|++-.|+---+.--.....+ -..|+++++ |.+..+ .+.|.++++++..+.+.....=.+....|+
T Consensus 249 ~I-----LlI~DEV~tGFGRTG~~FA~e~~g-i~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TY 320 (449)
T COG0161 249 GI-----LLIADEVATGFGRTGKMFACEHAG-IVPDILCLA--KGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTY 320 (449)
T ss_pred Cc-----EEEeecceeCCCcCchhhhhhhcC-CCCCeeeec--ccccccchhhHhHhhhHHHHHHHhcccCCeeccCCcc
Confidence 99 999999975532110000000011 126888877 877544 467888889887776643310000111223
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh-cC-CeEee--cCCeeEEEEec--CCc------HHH
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD-AG-ISAML--NELSSTVVFER--PQD------EEF 410 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~g-~~~~~--~~~~~iv~f~~--~~~------~~~ 410 (476)
.+ .+++..++++.+..-.-+..+++..++..+|.++|++ .. ...+. .....+..+.. +.. ...
T Consensus 321 sg-----hPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~ 395 (449)
T COG0161 321 SG-----NPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARV 395 (449)
T ss_pred cc-----CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhH
Confidence 22 2455556666553333345667777889999999987 22 11111 11122323321 111 001
Q ss_pred ---------hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 411 ---------VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 411 ---------~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
.+++.+-..++.+-++.-.-.|+++||++++.+.+.++...++
T Consensus 396 ~~~~~~~~~e~Gl~iRp~g~~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 396 GARVRAAALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred HHHHHHHHHHCCeEEeecCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 1222222223333333333459999999999999998876543
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-08 Score=96.33 Aligned_cols=257 Identities=10% Similarity=-0.011 Sum_probs=167.3
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
..+..-+++.+++++.+.-|.+.++.++++|+|+|.|+...+...... +.+-|+++-+-|+-+...+..+|+..+.+-+
T Consensus 112 SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-~~~GvliPiPQYPLYsAti~l~~~~~v~YyL 190 (475)
T KOG0258|consen 112 SQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-KKTGVLIPIPQYPLYSATISLLGGTQVPYYL 190 (475)
T ss_pred ccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-CCCceEeecCCCchhHHHHHHhCCcccceee
Confidence 347789999999999999998777778999999999998877766543 7888999999998888888899998877777
Q ss_pred CC--CCccCHHHHHHHHHcC--CCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 214 LI--SGEIDCADFKAKLLQN--KDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 214 ~~--~g~~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
|+ ++.+|.++|++.+.+. .-.|.++++.+|.|+||.+ ..+++|..+|.++++ .++.|++|---++...
T Consensus 191 dEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l-----~llaDEVYQ~Nvy~~~ 265 (475)
T KOG0258|consen 191 DEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGL-----VLLADEVYQDNVYTTG 265 (475)
T ss_pred ccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCe-----EEechHHHHhhccCCC
Confidence 64 5899999999999764 3357777777899999998 579999999999999 9999999844333221
Q ss_pred ccCCC-----CC----CcccccEEEE-cCCC--CCCCCCCceeEEeeh---hhhhhh----c--CCccccCCCCCcccC-
Q 011842 287 KKAPK-----VS----FKKPIGSVSV-SGHK--FVGCPMPCGVQITRM---EHINVL----S--SNVEYLASRDATIMG- 344 (476)
Q Consensus 287 ~~~~~-----~~----~~~~~Dsi~~-s~hK--~l~~p~~~G~l~~~~---~~~~~l----~--~~~~yl~~~~~~~~~- 344 (476)
..-+. .. ....+-.+++ +.|| |+-++.+.|++=+-+ +..+.+ + ..+.--.+.......
T Consensus 266 skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~Vn 345 (475)
T KOG0258|consen 266 SKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVN 345 (475)
T ss_pred cchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecC
Confidence 11000 00 0111222222 2334 344566677654322 111111 0 011111111011111
Q ss_pred -CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe
Q 011842 345 -SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE 403 (476)
Q Consensus 345 -sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~ 403 (476)
-.++..+..+|.+ .-..+.+.+...|+.+.+.+++.....+.++...++.|.
T Consensus 346 PP~Pgd~Sy~~~~~-------Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP 398 (475)
T KOG0258|consen 346 PPKPGDPSYDLFSS-------EKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFP 398 (475)
T ss_pred CCCCCCcchhhhhh-------hhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecc
Confidence 1122334444432 224567778888999999999976655655555565654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-08 Score=94.25 Aligned_cols=278 Identities=14% Similarity=0.085 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CC-CcEEEecC-CC-ch-------------HH
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FP-DGILYASR-ES-HY-------------SV 197 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p-~~~Vl~s~-~~-H~-------------S~ 197 (476)
+--+..+++.+++|++. .+-++.|.||+-.|+..+|.+ .| +..++++. .. |. |+
T Consensus 102 ~~~~f~~~vt~lf~~~k----vlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~ 177 (427)
T KOG1402|consen 102 VLGEFAEYVTKLFGYDK----VLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSW 177 (427)
T ss_pred hHHHHHHHHHHhcCcce----eeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchh
Confidence 33455677889999985 677888999999999999964 13 22233222 22 21 22
Q ss_pred HHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 198 FKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 198 ~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+---.+-..+..||.+ |.++|+.+|+.. ....+++.--...-|.+-| ++++.++|++|+. +++
T Consensus 178 ~~fgp~~P~~~~~v~Y~-----d~eale~~l~~~--~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynv-----l~I 245 (427)
T KOG1402|consen 178 DGFGPFLPGVVDKVPYG-----DAEALEVALKSP--NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNV-----LLI 245 (427)
T ss_pred hccCCCCCCcceeeccC-----CHHHHHHHhcCC--CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcE-----EEE
Confidence 11111111125566665 899999999763 2234444434666777754 8999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
.|++|.|..-.+.--. .+... ..|.+.+. |.+. +-++.+.+++.++.+..+... . -||.-+..+
T Consensus 246 ~DEvQTGl~RTGk~la--~d~env~PDivilg--KalSGG~~Pvsavl~~~~im~~~~pg------e----HgsTyggNp 311 (427)
T KOG1402|consen 246 ADEVQTGLARTGKLLA--CDYENVRPDIVILG--KALSGGVYPVSAVLADDDIMLNIKPG------E----HGSTYGGNP 311 (427)
T ss_pred ehhhhhcccccCcEEE--eehhhcCCCeEEEe--ccccCCeeeeEEEEecHHHHhccCCC------c----cccccCCCh
Confidence 9999977543211000 12212 25766654 6553 346778888888765443211 0 122222234
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE------eecCCe-eEEEEe-cCCc-H-HHhhcee------
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA------MLNELS-STVVFE-RPQD-E-EFVRRWQ------ 415 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~------~~~~~~-~iv~f~-~~~~-~-~~~~~~~------ 415 (476)
++...++.++....-++..+++..+-..|+++|.+..-.. +...+. +-+.|. .+.. . .+---+.
T Consensus 312 Lg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~ 391 (427)
T KOG1402|consen 312 LGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGL 391 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHccccccc
Confidence 5555555554333446788888999999999999864321 222221 223333 2211 1 1111111
Q ss_pred --ecccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 416 --LACQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 416 --l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
-+..++.+|+..--.++++|++.-+++|++..
T Consensus 392 LAkptH~~IiRfaPPL~I~e~dl~eg~e~i~k~i 425 (427)
T KOG1402|consen 392 LAKPTHGNIIRFAPPLVISEEDLREGIEAIEKTI 425 (427)
T ss_pred ccCCCCCCeEEecCCcccCHHHHHHHHHHHHHHh
Confidence 14557899998888889999999999998764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=93.70 Aligned_cols=281 Identities=15% Similarity=0.051 Sum_probs=154.2
Q ss_pred ccEEEcCCchhHHHHHHHHHHhhC----CC---cEEEecCCCchHHHHHHHHcCCeEEEEeCC---CC----CccCHHHH
Q 011842 159 YWGYITNCGTEGNLHGILVGREVF----PD---GILYASRESHYSVFKAARMYRMECVKVDCL---IS----GEIDCADF 224 (476)
Q Consensus 159 ~~g~~t~ggt~An~~al~aa~~~~----p~---~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~---~~----g~~D~~~L 224 (476)
..++|+++||+||..|+.+||... |- ..|.....-|.--.-++...+......|.+ ++ ---|+.+|
T Consensus 117 ~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l 196 (433)
T KOG1401|consen 117 ERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTAL 196 (433)
T ss_pred cEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHH
Confidence 348999999999999999998742 11 134454444533333333222222222111 11 01279999
Q ss_pred HHHHHcCCCCcEEEEEeeCCCccccc--cC--HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 225 KAKLLQNKDKPAIINVNIGTTVKGAV--DD--LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 225 e~~l~~~~~~p~~vv~t~gtt~tG~i--d~--l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
++.++.+++....|++.-....-|.+ +| +..|.++|+++|+ .++.|+++-|+.-.........- .-..|+
T Consensus 197 ~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~v-----l~I~DEV~tG~gR~g~~~a~e~~-~~~PDI 270 (433)
T KOG1401|consen 197 EKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGV-----LLIFDEVQTGLGRLGYGWAQEYF-GVTPDI 270 (433)
T ss_pred HHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCc-----eEEeehhhhCccccchHHHHHHh-CcCCcc
Confidence 99999988766778887666665655 33 7889999999999 99999999764332111110000 112577
Q ss_pred EEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHHHHHHHHHHH
Q 011842 301 VSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEVQKCLRNAHY 379 (476)
Q Consensus 301 i~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a~~ 379 (476)
+++. |.|+.+.++|+.+++++..+.++.....+. ..|+.+.. .+.-.....++.+.... +++.-.....+++.
T Consensus 271 ~t~a--K~L~gGlPigA~~v~~kV~~~i~~~~~l~h--g~Tf~gnp--Lacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~ 344 (433)
T KOG1401|consen 271 TTVA--KPLGGGLPIGATGVRDKVAEMISPGDHLYH--GGTFSGNP--LACSAGIKVLDELKDPETLKNVSKIGKELRKL 344 (433)
T ss_pred eeeh--hhccCCceeEEEeehHHHHhhcCCCCcccc--CcccCCCh--hhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 7765 999999999999999998887755433221 22344332 11112223444444333 23333333444454
Q ss_pred HHHHHHhcCCeEe--ecCCeeEEE-EecCCcH----HHhhceeecc-----cCCEEEEEE----cCCCCHHHHHHHHHHH
Q 011842 380 LKDRLLDAGISAM--LNELSSTVV-FERPQDE----EFVRRWQLAC-----QGNIAHVVV----MPNVTIDKLDDFLNEL 443 (476)
Q Consensus 380 l~~~L~~~g~~~~--~~~~~~iv~-f~~~~~~----~~~~~~~l~~-----~~~~lRv~~----~~~~T~edid~~~~~l 443 (476)
+.+.+.+.+-... ......+-+ |..|... ....++.+.. ....+|+.. .-.+|+|.+.++++++
T Consensus 345 l~e~~~~~~~~i~g~~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~ 424 (433)
T KOG1401|consen 345 LDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLILTLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTIL 424 (433)
T ss_pred HHHHhccCCCceeeeeeeEEEEEEEEeechhhhhhhhhhhhHHHHHHhcccccceEEEeccccccccCcHHHHHHHHHHH
Confidence 5555444332221 122222322 2223211 0001111110 012244432 3345699999999999
Q ss_pred HHHHHHHH
Q 011842 444 IENRSTWY 451 (476)
Q Consensus 444 ~~~~~~~~ 451 (476)
.+...++.
T Consensus 425 ~~~l~~~~ 432 (433)
T KOG1401|consen 425 EKVLSALN 432 (433)
T ss_pred HHHHHHhc
Confidence 99887754
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-08 Score=101.12 Aligned_cols=225 Identities=15% Similarity=0.069 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH------hhCCCcEEEecCCCch-HHHHHHHHcC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR------EVFPDGILYASRESHY-SVFKAARMYR------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~------~~~p~~~Vl~s~~~H~-S~~~~~~~~G------ 205 (476)
+...++.+++.++++-. ....+|+++|++|+-.|+..++ ....+..|+.-+.+|. ....+..+.+
T Consensus 59 ~~~~~la~~L~~~~p~~--~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~ 136 (339)
T PF00202_consen 59 PEAAELAEKLAELFPGG--LDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRK 136 (339)
T ss_dssp HHHHHHHHHHHHHSSTT--EEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHT
T ss_pred cchhhhhhhhhhccccc--cceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccc
Confidence 55667788888888332 2348999999999999999999 3224456665555543 2222222211
Q ss_pred ------CeEEEEeCCCCCc-----cCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCc
Q 011842 206 ------MECVKVDCLISGE-----IDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDR 269 (476)
Q Consensus 206 ------~~v~~v~~~~~g~-----~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~ 269 (476)
-.+..+|...... -..+.+++.+.+ ..+....|++.-..+..|.+.+ +++|.++|++||+
T Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gi---- 212 (339)
T PF00202_consen 137 GFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGI---- 212 (339)
T ss_dssp TTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-----
T ss_pred cccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccccc----
Confidence 1356677652111 011224444432 2333456666544555565532 8999999999999
Q ss_pred eEEEEecCcccccccccccCCCCCC---cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 270 FYIHCDGALFGLMMPFVKKAPKVSF---KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 270 ~~lhvD~a~~g~~~~~~~~~~~~~~---~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++++|+++.|+.--. + .+.. .-..|+++++ |.++.+.++|.+++++++.+.+.... . ..|+.+
T Consensus 213 -llI~DEV~tG~gRtG-~---~~a~~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~i~~~~~~~~--~---~~T~~g-- 278 (339)
T PF00202_consen 213 -LLIADEVQTGFGRTG-K---FFASEHYGVDPDIVTFG--KGLGGGLPISAVLGSEEIMEAFQPGS--H---GSTFGG-- 278 (339)
T ss_dssp -EEEEEETTTTTTTTS-S---SSGHHHHTSSSSEEEEE--GGGGTTSSEEEEEEEHHHHTTSCTTS--S---TCTTTT--
T ss_pred -ceecccccccccccC-C---ccceecccccCcccccc--cchhhhhhcccccccchhhccccccc--c---cccccc--
Confidence 999999997753211 0 0111 1126999987 99988899999999998766552211 1 112221
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD 386 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 386 (476)
.++...++++.+..-.-.+..++..++.++|.++|++
T Consensus 279 ---~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~ 315 (339)
T PF00202_consen 279 ---NPLSCAAALATLEILEEEDLLERVRELGERLREGLRE 315 (339)
T ss_dssp ----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ---chHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444332111123455566666777777665
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.8e-08 Score=95.87 Aligned_cols=264 Identities=17% Similarity=0.143 Sum_probs=153.7
Q ss_pred cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCCeEEEEeCC-----------CC-------Cc--
Q 011842 160 WGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRMECVKVDCL-----------IS-------GE-- 218 (476)
Q Consensus 160 ~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~~v~~v~~~-----------~~-------g~-- 218 (476)
..+|+++|||||-+|++++|.....-.||.-+.+ |.+-..++.+.++...+.+.. ++ +.
T Consensus 111 ~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~ 190 (442)
T KOG1404|consen 111 VVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNE 190 (442)
T ss_pred EEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCch
Confidence 4899999999999999999986444455544444 544444444444433332111 00 00
Q ss_pred -----cCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 219 -----IDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 219 -----~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
--.++|+..+... ...+...++......-|.+++ +++..++|+++|. +++.|+++.|+---+ +
T Consensus 191 ~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Gg-----l~IaDEVqtGfGRtG--~ 263 (442)
T KOG1404|consen 191 EEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGG-----LFIADEVQTGFGRTG--H 263 (442)
T ss_pred hhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCC-----EEEehhhhhcccccc--c
Confidence 1114445555433 334556667666667788876 8999999999999 999999997753221 1
Q ss_pred CCCCCCcc---cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 289 APKVSFKK---PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~~---~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
-+.+.. ..|+++.. |.++.+.++|.+++.++..+.+....+|.+ |+.+- +++..+++..+....
T Consensus 264 --~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~EIa~v~~~~~~~fn----Tyggn-----P~a~avg~aVL~Vik 330 (442)
T KOG1404|consen 264 --MWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTPEIADVLNQKSSHFN----TYGGN-----PVACAVGLAVLKVIK 330 (442)
T ss_pred --cccccccCCCccHHHHH--hhccCCCcceeeecCHHHHHHHHhcccccc----ccCCC-----chhHHHHHHHHHHHH
Confidence 123321 14666544 999999999999999998777765554442 22222 122222222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CeEeec-CCe-eEEEEe----c--C--CcH-------HHhh--ceeec---ccCC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAG--ISAMLN-ELS-STVVFE----R--P--QDE-------EFVR--RWQLA---CQGN 421 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g--~~~~~~-~~~-~iv~f~----~--~--~~~-------~~~~--~~~l~---~~~~ 421 (476)
-+++.++..+...||+++|.+.. ...+.. .+. .++-.. . + ... +..+ +..+- -.++
T Consensus 331 ee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~ 410 (442)
T KOG1404|consen 331 EENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGN 410 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeecccccce
Confidence 35667777888999999998742 122211 111 111111 1 1 110 0111 22221 2256
Q ss_pred EEEEEEcCCCCHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l 443 (476)
.+||..-.-.|+||||.+++.+
T Consensus 411 vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 411 VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EEEecCCeeccHHHHHHHHHHH
Confidence 7888877778999997777655
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=101.13 Aligned_cols=180 Identities=17% Similarity=0.134 Sum_probs=121.6
Q ss_pred cEEEcCCchhHHHHHHHHHHhhCCCcEEE-----ecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCC
Q 011842 160 WGYITNCGTEGNLHGILVGREVFPDGILY-----ASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK 234 (476)
Q Consensus 160 ~g~~t~ggt~An~~al~aa~~~~p~~~Vl-----~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~ 234 (476)
.+.++++.+.|++..+.+... ++.+|+ +. ..|+++...+++.|++++.|-. .++-...+++.+|.+++.
T Consensus 85 a~~ivnnn~aAVll~~~al~~--~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~--tn~t~~~d~~~AIne~ta- 158 (395)
T COG1921 85 AAAIVNNNAAAVLLTLNALAE--GKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGT--TNRTHLKDYELAINENTA- 158 (395)
T ss_pred heeeECCcHHHHHHHHhhhcc--CCeEEEEcccccc-CCCCChhHHHHHcCCEEEEecc--cCcCCHHHHHHHhccCCe-
Confidence 388999999998887766543 333333 23 5789999999999999988865 356688999999999986
Q ss_pred cEEEEEeeCCCccccc--cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCC
Q 011842 235 PAIINVNIGTTVKGAV--DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP 312 (476)
Q Consensus 235 p~~vv~t~gtt~tG~i--d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p 312 (476)
++.-.+.++. |.. -++++++++|++||+ .+++|.+.|..+-+ .+...--...++|.+++|++|.+++|
T Consensus 159 --~llkV~s~~~-~f~~~l~~~~l~~ia~~~~l-----pvivD~aSg~~v~~--e~~l~~~la~GaDLV~~SgdKllgGP 228 (395)
T COG1921 159 --LLLKVHSSNY-GFTGMLSEEELVEIAHEKGL-----PVIVDLASGALVDK--EPDLREALALGADLVSFSGDKLLGGP 228 (395)
T ss_pred --eEEEEeeccc-cccccccHHHHHHHHHHcCC-----CEEEecCCcccccc--ccchhHHHhcCCCEEEEecchhcCCC
Confidence 3323233322 333 367889999999999 99999997654321 11111111235999999999999976
Q ss_pred CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 313 MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 313 ~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
. .|+++.|.+++..+...+-+. .+.... ....++.++++.+-.
T Consensus 229 q-aGii~GkKelI~~lq~~~l~R-----alrv~K--~tla~l~~aLe~y~~ 271 (395)
T COG1921 229 Q-AGIIVGKKELIEKLQSHPLKR-----ALRVDK--ETLAALEAALELYLQ 271 (395)
T ss_pred c-cceEechHHHHHHHHhhhhhh-----hhhcCc--HhHHHHHHHHHHHcC
Confidence 5 999999999987665443321 112222 123456667766643
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-09 Score=103.73 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=137.6
Q ss_pred cEEEecCCCchHH-HHHHHHcCCeEE---EEe-CCC---CCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCH
Q 011842 185 GILYASRESHYSV-FKAARMYRMECV---KVD-CLI---SGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDL 253 (476)
Q Consensus 185 ~~Vl~s~~~H~S~-~~~~~~~G~~v~---~v~-~~~---~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l 253 (476)
+.+|+|+..|.-. ..+|+.+|+... .++ .+. .|+||.-.+++.|+++ +++|.+++...|++..|..|.+
T Consensus 232 Pt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi 311 (838)
T KOG0630|consen 232 PTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMI 311 (838)
T ss_pred ceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHH
Confidence 5899999999754 568899998422 222 222 3689999999999875 6789999999999999999999
Q ss_pred HHHHHHHHHhC-CCCCceEEEEecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhh---hhhh
Q 011842 254 DLVIQTLEESG-FTQDRFYIHCDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH---INVL 328 (476)
Q Consensus 254 ~~I~~ia~~~g-~~~~~~~lhvD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~---~~~l 328 (476)
-+|.++|++|+ + |+|.-|- +...+.+..... ...+.+.+||++.+..-|+|.|-.--+++.|+-. ..++
T Consensus 312 ~kildi~eahakf-----WLHasGh-aiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSaf 385 (838)
T KOG0630|consen 312 LKILDICEAHAKF-----WLHASGH-AIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAF 385 (838)
T ss_pred HHHHHHHHHhhhe-----eEeeccc-hhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhc
Confidence 99999999998 6 9998764 221221222111 1223345899999999999998777666666421 1111
Q ss_pred cCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 011842 329 SSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 329 ~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~ 391 (476)
...+-| |....++.+|.++.++|.+.+.++++....+++.+.+.+++.....
T Consensus 386 esdpi~-----------rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eie 437 (838)
T KOG0630|consen 386 ESDPIL-----------REKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIE 437 (838)
T ss_pred ccChHH-----------HHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 111111 2224579999999999999999999999999999999988864333
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=95.27 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=159.2
Q ss_pred EEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEE
Q 011842 161 GYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIIN 239 (476)
Q Consensus 161 g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv 239 (476)
+.+--|+-+.+-.-+++.+. || +.|+.-.++|.-+.-.+.+.+++++++|.++++.+++|++.+.++.+. ++.++.
T Consensus 89 ic~GvGsDE~ID~iiR~~c~--PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds-~iK~~F 165 (375)
T KOG0633|consen 89 ICVGVGSDELIDLIIRCVCD--PGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDS-KIKCIF 165 (375)
T ss_pred eEEecCcHHHHHHHHhheec--CCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccc-cceEEE
Confidence 55566777777777777776 77 677777777755555667789999999999999999999999998764 456889
Q ss_pred EeeCCCccccccCHHHHHHHHHHh-CCCCCceEEEEecCcccccccccccCCCCCCc-cccc--EEEEcCCCCCCCCCCc
Q 011842 240 VNIGTTVKGAVDDLDLVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK-KPIG--SVSVSGHKFVGCPMPC 315 (476)
Q Consensus 240 ~t~gtt~tG~id~l~~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~-~~~D--si~~s~hK~l~~p~~~ 315 (476)
+++|.++||.+-..+.|.++.+-. |. +++||+||--+... .. ...+. +.-. ++-.-++.++.++.+.
T Consensus 166 ~tSPgNPtg~~ik~~di~KiLe~p~ng-----lVVvDEAYidFsg~-~S---~~~lV~kYpNLivlqTlSKsfGLAGiRv 236 (375)
T KOG0633|consen 166 LTSPGNPTGSIIKEDDILKILEMPDNG-----LVVVDEAYIDFSGV-ES---RMKLVKKYPNLIVLQTLSKSFGLAGIRV 236 (375)
T ss_pred EcCCCCCCcccccHHHHHHHHhCCCCc-----EEEEeeeeEeeccc-cc---cchHhHhCCceeehhhhhhhcCcceeEe
Confidence 999999999998888888887743 34 89999998322110 00 11111 1122 2223334466688999
Q ss_pred eeEEeehhhhhhh-cCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---hhcHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 011842 316 GVQITRMEHINVL-SSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---YKGFQKEVQKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 316 G~l~~~~~~~~~l-~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~g~~~ 391 (476)
|+-+++.+..+-+ +...+|--+ ..+| -++|+++. .+.++...+...+-+.+|...|.+.++.-
T Consensus 237 G~~~~~~~ia~iln~~KaPYNiS----~~~s---------~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~ 303 (375)
T KOG0633|consen 237 GYGAFPLSIAEILNRAKAPYNIS----VAGS---------VAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLN 303 (375)
T ss_pred ecccccHHHHHHHHhccCCcccc----chhH---------HHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 9999887765444 223445211 1112 12333332 23455555666666677888888876543
Q ss_pred --eecCCeeEEEEecCC-cHHHhhce----------eecc------cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 392 --MLNELSSTVVFERPQ-DEEFVRRW----------QLAC------QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 392 --~~~~~~~iv~f~~~~-~~~~~~~~----------~l~~------~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
..+..+|.+..++-+ +....+++ .+.. -.+++|+++. |+|+-+.++.-|++
T Consensus 304 ~~~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG---t~EentvL~k~~K~ 373 (375)
T KOG0633|consen 304 DYPGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG---TPEENTVLMKCLKQ 373 (375)
T ss_pred CCCCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC---CcccchHHHHHHHh
Confidence 223345666665432 22221111 1111 1368998873 55666666666654
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-08 Score=94.82 Aligned_cols=268 Identities=14% Similarity=0.098 Sum_probs=167.3
Q ss_pred cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC-C-CCCccCHHHHHHHHHcCCCCcEE
Q 011842 160 WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC-L-ISGEIDCADFKAKLLQNKDKPAI 237 (476)
Q Consensus 160 ~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~-~-~~g~~D~~~Le~~l~~~~~~p~~ 237 (476)
..+-|.|||.|+-.+.-.....+|+..|++|+++...........|+++..+|. | ++..+|.+.+-+.|..-...- +
T Consensus 96 ~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~-v 174 (396)
T COG1448 96 ATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAPEGS-V 174 (396)
T ss_pred hheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCCCCC-E
Confidence 467899999999988777777779999999999998888888889999999986 3 345699999999998654322 4
Q ss_pred EEEe-eCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC-C-ccc-ccEEEEcCCCCCC
Q 011842 238 INVN-IGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS-F-KKP-IGSVSVSGHKFVG 310 (476)
Q Consensus 238 vv~t-~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~-~-~~~-~Dsi~~s~hK~l~ 310 (476)
|+.. ...||||.- +..++|+++.++.++ +-++|-||-|+.--..+....+. + ... --.++.|+.|.++
T Consensus 175 vLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~l-----ip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg 249 (396)
T COG1448 175 VLLHGCCHNPTGIDPTEEQWQELADLIKERGL-----IPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG 249 (396)
T ss_pred EEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-----eeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh
Confidence 4443 338999965 558899999999999 99999998554221111100000 0 111 2467888889665
Q ss_pred C-CCCceeEEee--hh-hhh----hhc--CCccccCCCCCcccCCCCChh--HHHHH---HHHHHhChhcHHHHHHHHHH
Q 011842 311 C-PMPCGVQITR--ME-HIN----VLS--SNVEYLASRDATIMGSRNGHA--PIFLW---YTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 311 ~-p~~~G~l~~~--~~-~~~----~l~--~~~~yl~~~~~~~~~sr~~~~--~l~~~---~~l~~~g~~g~~~~~~~~~~ 375 (476)
- +-++|.+.+- ++ ... .+. ....|- +++.+. ..+.. -.|++.-...+..+.+|..+
T Consensus 250 LYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~yS---------nPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~ 320 (396)
T COG1448 250 LYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYS---------NPPAHGAAVVATILNNPELRAEWEQELEEMRQRILE 320 (396)
T ss_pred hhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccC---------CCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 4566765543 22 111 111 112221 111111 11100 12333334567788888999
Q ss_pred HHHHHHHHHHhcCCe---EeecCCeeEEEEecCCcHH---Hhhceee--cccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGIS---AMLNELSSTVVFERPQDEE---FVRRWQL--ACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~---~~~~~~~~iv~f~~~~~~~---~~~~~~l--~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+++.|.+.|++.+-. ........+.++....+++ +.+.+.+ ...| |+++. ..++..|+.+.++|.++
T Consensus 321 mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sG---Ri~va-Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 321 MRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASG---RINVA-GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred HHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCC---eeeec-cCChhhHHHHHHHHHhh
Confidence 999999999984321 2223344555554322222 2233333 3333 77764 57889999999988764
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-07 Score=88.81 Aligned_cols=315 Identities=14% Similarity=0.104 Sum_probs=183.8
Q ss_pred hHHHHHHHHHhhCCCC---CCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH-HHHHHHHhhCCCc
Q 011842 110 YGALAQLQHFSINNLG---DPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL-HGILVGREVFPDG 185 (476)
Q Consensus 110 ~~~l~~~l~~~~n~~g---~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~-~al~aa~~~~p~~ 185 (476)
++.+..+.....+-.| +..+.|+.+.-...+..++.+.+++|+++|. +|.+.|..||-.+-+ ++.+......+.+
T Consensus 18 ~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd-~Y~VlflqGGat~qf~~~p~nLl~~~~~~ 96 (365)
T COG1932 18 PEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPD-DYKVLFLQGGATGQFAMAPMNLLGKRGTD 96 (365)
T ss_pred HHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCccHHHHHHHHHhhhcccCce
Confidence 4555555544444333 3345566555566788889999999999995 577888877755544 4444343311111
Q ss_pred EEEecCCCchHHHHHHHHcC-CeEEEEeCCC--CCc-cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC-HHHHHHHH
Q 011842 186 ILYASRESHYSVFKAARMYR-MECVKVDCLI--SGE-IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD-LDLVIQTL 260 (476)
Q Consensus 186 ~Vl~s~~~H~S~~~~~~~~G-~~v~~v~~~~--~g~-~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~-l~~I~~ia 260 (476)
-|.+-..+..++..+-++.. ..+....... .+. .|++..+ +.++ -.+|..+...|.+|.--| .+.+..
T Consensus 97 yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~---~ayv~~~~NeTi~Gv~v~~~p~~~~-- 169 (365)
T COG1932 97 YVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDN---DAYVHFCWNETISGVEVPELPDIGS-- 169 (365)
T ss_pred eEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCCC---ccEEEEecCCcccceEccCCCCCCC--
Confidence 24444444444544444332 2222222111 122 2333322 2222 236888878888887644 222111
Q ss_pred HHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-----Ccccc
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-----NVEYL 335 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-----~~~yl 335 (476)
+ . .+++|...+.+..+ +++. ..|.|+++.+|.+| |-|.+++++|+.+++.... .-.|.
T Consensus 170 -~--~-----~~v~D~SS~ilsr~-------iDvs-k~dviyagaQKnlG-paGltvvIvr~~~l~r~~~~~~P~if~y~ 232 (365)
T COG1932 170 -D--G-----LLVADASSAILSRP-------IDVS-KYDVIYAGAQKNLG-PAGLTVVIVRPDLLERAESYTLPSIFDYL 232 (365)
T ss_pred -C--c-----eEEEecccHHhcCC-------CChh-HcceEEEehhhccC-ccceEEEEEcHHHHhcccccCCchHhhch
Confidence 1 3 79999886655444 5553 37999999999999 7889999999997765532 12232
Q ss_pred CCCC-CcccCCCCChhHHHHHHHHHHh-ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cCC---eeEEEEecCCc--
Q 011842 336 ASRD-ATIMGSRNGHAPIFLWYTLNRK-GYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NEL---SSTVVFERPQD-- 407 (476)
Q Consensus 336 ~~~~-~~~~~sr~~~~~l~~~~~l~~~-g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~---~~iv~f~~~~~-- 407 (476)
...+ .+...|++-++....-..++.+ ..-|++.+.++..+.++.|++.+.+.++.... .+. ...|+|...++
T Consensus 233 ~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~l 312 (365)
T COG1932 233 THADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAEL 312 (365)
T ss_pred hhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHH
Confidence 2111 1223344322222222344544 34579999999999999999999998875432 121 24577776542
Q ss_pred -HHHhh-----ceeec---ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 408 -EEFVR-----RWQLA---CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 408 -~~~~~-----~~~l~---~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..|.. ++..- ...+.+|+++-.....|+++.|++-|++..++
T Consensus 313 d~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 313 DKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred HHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 12221 11111 11244999999999999999999999877554
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-06 Score=95.80 Aligned_cols=211 Identities=10% Similarity=0.042 Sum_probs=116.4
Q ss_pred HHHHHHHHc-----CCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 222 ADFKAKLLQ-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 222 ~~Le~~l~~-----~~~~p~~vv~t~g-tt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+++.|++ ..+....|++.-. ...-|.+.| +++|.++|++||+ +++.|+++.|+.--+......
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gi-----lLI~DEV~TGfGRtG~~fa~e 641 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKI-----PVIFDEVFTGLWRLGVESAWE 641 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCC-----EEEEeecccCCCcccchhhHH
Confidence 567777763 2334455555432 344466543 8999999999999 999999997763211110000
Q ss_pred CCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc---cccCCCCCcccCCCCChhHHHHHHH---HHHhChh
Q 011842 292 VSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV---EYLASRDATIMGSRNGHAPIFLWYT---LNRKGYK 364 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~---~yl~~~~~~~~~sr~~~~~l~~~~~---l~~~g~~ 364 (476)
..+ -..|++++. |.++.+ .++|+++++++..+.+.... .++. ..|+.+. +++..++ |+.+..+
T Consensus 642 ~~g-v~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~h--g~Ty~gn-----pl~cAaala~L~~~~~~ 711 (817)
T PLN02974 642 LLG-CKPDIACYA--KLLTGGLVPLAATLATEEVFEAFRGPSKLDALLH--GHSYTAH-----PMGCAAAAKALQWYKDP 711 (817)
T ss_pred hcC-CCCCEEeec--ccccCCCCccEEEEEcHHHHHhhccccccCCccc--CCCCCcC-----HHHHHHHHHHHHHHHcc
Confidence 111 126888877 999988 48999999999877663210 1111 1222222 3444444 4444332
Q ss_pred c-HHHHHHHHHHHHHHHHHHH----HhcCCeEeecCCeeEEE--EecCCc---------HHH----h--hceeecccCCE
Q 011842 365 G-FQKEVQKCLRNAHYLKDRL----LDAGISAMLNELSSTVV--FERPQD---------EEF----V--RRWQLACQGNI 422 (476)
Q Consensus 365 g-~~~~~~~~~~~a~~l~~~L----~~~g~~~~~~~~~~iv~--f~~~~~---------~~~----~--~~~~l~~~~~~ 422 (476)
+ +++..++..++..++.+.| ++.+...-+.....+.. |..+.. ..+ . +++.+...++.
T Consensus 712 ~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnv 791 (817)
T PLN02974 712 STNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNV 791 (817)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecCCE
Confidence 2 2344455555555555555 33332111111112222 222110 011 1 23333334678
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++...+.+++++++.+++.|.+.+
T Consensus 792 i~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 792 VYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8888888999999999999997653
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.9e-07 Score=88.69 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCCCCcccEEE---cCCchhHHHHHHHHHHhhCCCcEEEe-cCCCchHHHHHH----------HHcCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYI---TNCGTEGNLHGILVGREVFPDGILYA-SRESHYSVFKAA----------RMYRM 206 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~---t~ggt~An~~al~aa~~~~p~~~Vl~-s~~~H~S~~~~~----------~~~G~ 206 (476)
++.+.+-+|+.||.+. .++ ..+||.|+-+++...++ |||+++. +-.-|..+.+.. +-+|+
T Consensus 56 Rd~le~iyA~vfgaE~----ALVRpq~vSGTHAi~~~Lfg~Lr--pGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi 129 (403)
T PF06838_consen 56 RDKLERIYADVFGAED----ALVRPQFVSGTHAIALALFGVLR--PGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI 129 (403)
T ss_dssp HHHHHHHHHHHCT-SE----EEEETTS-SHHHHHHHHHHHH----TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-
T ss_pred HHHHHHHHHHHhCchh----hhhcccccchHHHHHHHHHhcCC--CCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc
Confidence 4445566899999974 444 34999999999998876 9998774 444455555544 33477
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEee--CCC--ccccccCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 207 ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNI--GTT--VKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 207 ~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~--gtt--~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
+...|++.++|.+|.+.++++|.++++ +|.+.- |.+ +.=.++.|+++++++|+.+- +.++.||-+||-++
T Consensus 130 ~Y~~v~L~~dg~~D~~~i~~~~~~~tk---~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p---~~iifVDNCYGEFv 203 (403)
T PF06838_consen 130 KYREVPLTEDGTIDWEAIKKALKPNTK---MVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP---DVIIFVDNCYGEFV 203 (403)
T ss_dssp EEEE--B-TTSSB-HHHHHHHHHTTEE---EEEEE-S-TTSSS----HHHHHHHHHHHHHH-T---TSEEEEE-TTTTTT
T ss_pred eeEEEeecCCCCcCHHHHHHhhccCce---EEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC---CeEEEEeCCcceec
Confidence 889999999999999999999997775 666653 322 23345778888888887642 44999999998765
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcC--CccccCCCCCcccCCCCC-hhHHHHHHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSS--NVEYLASRDATIMGSRNG-HAPIFLWYT 357 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~~-~~~l~~~~~ 357 (476)
-.... . .-++|.+..|.=|..+++ +..|++..|.++++.... ..+=+... .|...+ ...+.+-.-
T Consensus 204 E~~EP----~--~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e----~G~t~~~~R~~~QGlF 273 (403)
T PF06838_consen 204 ETQEP----T--EVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKE----VGATLGTNRLMFQGLF 273 (403)
T ss_dssp SSS-G----G--GGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGG----SS--TTTHHHHHHHHH
T ss_pred cccCc----c--ccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccc----cccCcchHHHHHhHHh
Confidence 43111 1 124999999999987654 346777778777764321 11111111 111111 111221111
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCCc
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQD 407 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~~ 407 (476)
+ -+..+.+...-+.+....+++.|+.+...+. ..|-.+.....
T Consensus 274 l-------AP~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~~~ 320 (403)
T PF06838_consen 274 L-------APHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELGSP 320 (403)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-SSH
T ss_pred h-------chHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECCCH
Confidence 1 1456666677777777778889987654322 24445555443
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-08 Score=101.28 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch------HHHHHHHHcCCeEEEEeCCCC
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY------SVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~------S~~~~~~~~G~~v~~v~~~~~ 216 (476)
.+.+.++.+.|.+. .+++++...|+++++.+.. ++.+|++|+-.-. -+....+..|++++.|-+.
T Consensus 51 ~v~~ll~~ltgAea----A~VvNnnaAAv~L~l~~la---~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt-- 121 (367)
T PF03841_consen 51 HVEELLCELTGAEA----ALVVNNNAAAVLLALNTLA---KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT-- 121 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc----ccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc--
Confidence 35566888999874 7888888888888776543 4557777765432 2456667778888888754
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCc--cccc--cCHHHHHHHHHHhCCCCCceEEEEecCcccccccc----ccc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTV--KGAV--DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF----VKK 288 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~--tG~i--d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~----~~~ 288 (476)
.+-.+++++++|.++|. ++.-.+.++. .|.. -+++++++++++|++ ++++|.+.|... +. ..+
T Consensus 122 N~t~~~Dye~AI~e~Ta---~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~l-----p~i~DlgsG~l~-dl~~~gl~~ 192 (367)
T PF03841_consen 122 NRTHLSDYEKAITENTA---ALLKVHTSNFRIQGFTGEVSLEELAELAKEHGL-----PVIVDLGSGLLV-DLSPYGLPD 192 (367)
T ss_dssp ------------------------------------------HHHHHHHHHT-------EEEE-TTHHHH-HHHTT----
T ss_pred ccccccccccccccccc---ccccccccccccccccccccHHHHHHHHhhcCC-----cEEEECCCCCCc-CcccccCcc
Confidence 34567889999999886 3333333333 3433 379999999999999 999998864432 11 111
Q ss_pred CC-CCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC
Q 011842 289 AP-KVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS 330 (476)
Q Consensus 289 ~~-~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~ 330 (476)
.+ ..... .++|.+++|+.|.+++|. +|+++.|.++++.+..
T Consensus 193 Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~lI~~lk~ 235 (367)
T PF03841_consen 193 EPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIVGKKELIEKLKK 235 (367)
T ss_dssp ------CCCCT-SEEEEETTSSSSS-S--EEEEEEHHHHHHHHH
T ss_pred ccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEEeCHHHHHHHhh
Confidence 11 12223 359999999999999766 7999999999877654
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-06 Score=83.03 Aligned_cols=288 Identities=15% Similarity=0.144 Sum_probs=168.6
Q ss_pred HHHHHHHcCCCCCcccEEEcCCchhH--HHHHHHH-HHhhCCCcEEEecCCCchHHHH-HHHHcCCeEEEEeCCC-----
Q 011842 145 LDWFARLWELENNEYWGYITNCGTEG--NLHGILV-GREVFPDGILYASRESHYSVFK-AARMYRMECVKVDCLI----- 215 (476)
Q Consensus 145 ~~~la~l~g~~~~~~~g~~t~ggt~A--n~~al~a-a~~~~p~~~Vl~s~~~H~S~~~-~~~~~G~~v~~v~~~~----- 215 (476)
.+.+.+.+|++. .+-|.-|-.| ++..+.. .+++-|+.+.++.+..|+--.. -....|..++.+++++
T Consensus 85 ~~avkdifGfq~----~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~ 160 (471)
T COG3033 85 ADAVKDIFGFQY----TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTE 160 (471)
T ss_pred HHHHHHhcCcee----eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCcccccccccccccc
Confidence 344556678764 4556555444 4433322 2334577777777777765433 3455677777666542
Q ss_pred -----CCccCHHHHHHHHHcCC--CCcEEEEEeeCCCcccc---ccCHHHHHHHHHHhCCCCCceEEEEecCccc---cc
Q 011842 216 -----SGEIDCADFKAKLLQNK--DKPAIINVNIGTTVKGA---VDDLDLVIQTLEESGFTQDRFYIHCDGALFG---LM 282 (476)
Q Consensus 216 -----~g~~D~~~Le~~l~~~~--~~p~~vv~t~gtt~tG~---id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g---~~ 282 (476)
.|.+|++.|++.|++.+ ..|.++.....++.-|. +++++++.+||++|++ .++.|++-.+ .+
T Consensus 161 ~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~i-----pvv~Da~RfaENaYF 235 (471)
T COG3033 161 VKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDI-----PVVMDAARFAENAYF 235 (471)
T ss_pred ccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCC-----cEEeehhhhhhhhhh
Confidence 37899999999998864 35655544445555554 4789999999999999 9999999532 11
Q ss_pred ccc-cccCCCCCC-------cccccEEEEcCCCCCCCCCCceeEEeehhh----hhhh-cCCccccCCCCCcccCCCCCh
Q 011842 283 MPF-VKKAPKVSF-------KKPIGSVSVSGHKFVGCPMPCGVQITRMEH----INVL-SSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 283 ~~~-~~~~~~~~~-------~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~----~~~l-~~~~~yl~~~~~~~~~sr~~~ 349 (476)
+.. ......++. ...+|-++.|.+|=..++. .|+++.+++- ...+ .....|- .-.+ .|+-.|.
T Consensus 236 Ik~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~e--G~~t-YGgl~Gr 311 (471)
T COG3033 236 IKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNM-GGFLCFKDDSFFDVYEECRTLVVVQE--GFPT-YGGLAGR 311 (471)
T ss_pred hhhcCcccccccHHHHHHHHHhhhhhheeeccccceecc-ccEEEecCccHHHHHHHHHhheEeec--cccc-cCcccch
Confidence 111 111111221 1238999999999888766 4888888872 1111 1111111 0111 1222222
Q ss_pred hHHHHHHHHHHhChhcH-HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEec-------CCc----HHHh----h-
Q 011842 350 APIFLWYTLNRKGYKGF-QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER-------PQD----EEFV----R- 412 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~-------~~~----~~~~----~- 412 (476)
..-++...|. ++. ...+++-.+-.+||.+.|.+.|+.++.+.+..-|++.. |.+ +.+. +
T Consensus 312 dmealAvGL~----e~~~~~yl~~Rv~Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e 387 (471)
T COG3033 312 DMEALAVGLR----EGVNFDYLAHRVAQVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKE 387 (471)
T ss_pred hHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHH
Confidence 2222333332 221 34556666778899999999999877666655555432 211 1111 1
Q ss_pred -cee--------e----------cccCCEEEEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 011842 413 -RWQ--------L----------ACQGNIAHVVVMPNV-TIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 -~~~--------l----------~~~~~~lRv~~~~~~-T~edid~~~~~l~~~~~~ 449 (476)
+.+ + ++.-..+|+.+...+ |.+++|.++++++++.+.
T Consensus 388 ~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 388 AGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred hCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 111 1 122367899876554 999999999999877553
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-06 Score=80.48 Aligned_cols=294 Identities=16% Similarity=0.152 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC---CcEEEecC----CCchHHHHHHHHcCCe----EE
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP---DGILYASR----ESHYSVFKAARMYRME----CV 209 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p---~~~Vl~s~----~~H~S~~~~~~~~G~~----v~ 209 (476)
.+-+...++++.|....+ + ...++-..|+..++..-. .| .-.|+... ..||.+..-+++-|+. .+
T Consensus 113 De~il~l~~~iVGA~e~E--v-avmNsLTvNlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~ 188 (465)
T KOG3846|consen 113 DEPILPLLAPIVGAQENE--V-AVMNSLTVNLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMI 188 (465)
T ss_pred chhhhhhhhhhccCCchh--h-hhHhhhhhHHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheE
Confidence 345667788899987543 3 334555667666655432 12 12344332 3688899999999985 34
Q ss_pred EEeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 210 KVDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 210 ~v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.+...+ ...+..+++-+.|+++++...+|..+-...+||...++.+|...-+..|+ ++-.|=||+.+-.|.
T Consensus 189 ~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc-----~VGfDLAHAvgNVpL--- 260 (465)
T KOG3846|consen 189 QIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGC-----LVGFDLAHAVGNVPL--- 260 (465)
T ss_pred EecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCc-----EechhhhhhhcCCce---
Confidence 444332 23578899999999998877778787779999999999999977777888 999999998665552
Q ss_pred CCCCCCcc-cccEEEEcCCCCCCC-CCCceeEEeehhhhhh-hcCCccccCC-------------CCCcccCCCC----C
Q 011842 289 APKVSFKK-PIGSVSVSGHKFVGC-PMPCGVQITRMEHINV-LSSNVEYLAS-------------RDATIMGSRN----G 348 (476)
Q Consensus 289 ~~~~~~~~-~~Dsi~~s~hK~l~~-p~~~G~l~~~~~~~~~-l~~~~~yl~~-------------~~~~~~~sr~----~ 348 (476)
..-. ++|+-++.+.|++.+ +.++|.+++..++... .+....|... -.....|-|- .
T Consensus 261 ----~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi 336 (465)
T KOG3846|consen 261 ----QLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPI 336 (465)
T ss_pred ----EEeecCCceEEEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcH
Confidence 2222 389999999999975 4567888887765321 1111112111 0111122222 1
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCe----------EeecCCe-------eEEEEecCCcHHH
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GIS----------AMLNELS-------STVVFERPQDEEF 410 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~----------~~~~~~~-------~iv~f~~~~~~~~ 410 (476)
....++..+++.+.+-.+.+...+..-++.|+...++.. |.. .+..|.+ ..+.|..|.+..+
T Consensus 337 ~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~~vf 416 (465)
T KOG3846|consen 337 IDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTPKVF 416 (465)
T ss_pred hHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCchHHH
Confidence 223445566666666667888888888888887777653 211 1111110 1222333332211
Q ss_pred --hhceeec---ccCCEEEEE-EcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 411 --VRRWQLA---CQGNIAHVV-VMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 411 --~~~~~l~---~~~~~lRv~-~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+-.+. ...+.+|+. +.-++|..||-.|+++|.++...+
T Consensus 417 qeL~krGv~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 417 QELHKRGVIGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred HHHHHcCeeccccCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 1111122 235789987 567889999999999999987653
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.9e-05 Score=74.84 Aligned_cols=287 Identities=10% Similarity=0.053 Sum_probs=149.6
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHH--HHhh----------CCCcEEEecCCCchHHHHHHHHcCCeEEE
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILV--GREV----------FPDGILYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~a--a~~~----------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
++++.+++++|++.++ .++-.++|..++.-+.+ ...- .+.-..+|+.+.|.-....++.+|++.+.
T Consensus 73 e~r~l~a~llgv~~~~--viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Giemi~ 150 (425)
T PF12897_consen 73 EARELFAELLGVPPEN--VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGIEMIP 150 (425)
T ss_dssp HHHHHHHHHHTS-GGG--EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHhCCCHHH--EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCcEEEe
Confidence 5677899999998754 77766666666543222 1110 13457999999999999999999999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHH-HHhCCCCCceEEEEecCcccccc-cc
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTL-EESGFTQDRFYIHCDGALFGLMM-PF 285 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia-~~~g~~~~~~~lhvD~a~~g~~~-~~ 285 (476)
||.+++| -|+|.+|+.+.++...--+-++-.-+|++|..-. +++++.+- ...++ .|.=|.||+...+ ..
T Consensus 151 VpM~~dG-PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DF-----RI~WDNAY~vHhL~~~ 224 (425)
T PF12897_consen 151 VPMTEDG-PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDF-----RIFWDNAYAVHHLYDE 224 (425)
T ss_dssp EEEETTE-E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT------EEEEE-TTTT-BSSSS
T ss_pred cCCCCCC-CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCe-----EEEeecCceEeecccc
Confidence 9998766 4999999999877543335555456899998854 44444431 23455 9999999986654 22
Q ss_pred cccCCCCCC--------cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 286 VKKAPKVSF--------KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 286 ~~~~~~~~~--------~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
......++. ...--....|..|--..+.|++++..+.+-++.+.....+. ++ +..-+.|..-
T Consensus 225 ~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~-----tI-----gpdKvNQLRH 294 (425)
T PF12897_consen 225 EPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQ-----TI-----GPDKVNQLRH 294 (425)
T ss_dssp SS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH------S--------HHHHHHH
T ss_pred ccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCc-----ee-----CccHHHHHHH
Confidence 111111111 11123455667787777899999999887544332211110 00 1112334444
Q ss_pred HHHhC-hh-cHHHHHHHHHH--------HHHHHHHHHH-hcCCeEeecCC-eeEEEEecCCc--HH---Hhhc--eee--
Q 011842 358 LNRKG-YK-GFQKEVQKCLR--------NAHYLKDRLL-DAGISAMLNEL-SSTVVFERPQD--EE---FVRR--WQL-- 416 (476)
Q Consensus 358 l~~~g-~~-g~~~~~~~~~~--------~a~~l~~~L~-~~g~~~~~~~~-~~iv~f~~~~~--~~---~~~~--~~l-- 416 (476)
.+.++ .+ |+++++++..+ .-+.|.+.|. ..++-.+..|. ...|.|...+. .. +.+. ..+
T Consensus 295 vrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~AkrvV~lakeAGV~LT~ 374 (425)
T PF12897_consen 295 VRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTAKRVVELAKEAGVALTP 374 (425)
T ss_dssp HHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-HHHHHHHHHHTTEE---
T ss_pred HHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChHHHHHHHHHHhCceeCC
Confidence 44443 34 66666665544 3344555666 55666665554 45677776542 22 2222 222
Q ss_pred -----c----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 417 -----A----CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 417 -----~----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
| .....+|+..+ .-+.||++...+.+.-+.+
T Consensus 375 AGAtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 375 AGATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFATCVK 414 (425)
T ss_dssp TTTTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 1 12356887654 2478999988888866654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-07 Score=85.09 Aligned_cols=228 Identities=14% Similarity=0.031 Sum_probs=147.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcCCeEEEEeCCCC---C
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRMECVKVDCLIS---G 217 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~---g 217 (476)
.+.....-+|.|+..-....++.-...++..+.+...|.++|+. -|+..+...-|..|..--.|.+.+.|..--+ -
T Consensus 60 ne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l 139 (432)
T KOG3843|consen 60 NEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDEL 139 (432)
T ss_pred HHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHH
Confidence 34444455677776432233333344566667777888777765 4777788888888888888998777754222 3
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccc---cccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKG---AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG---~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
.-|++.+++.+++.+.. .+...+.||..- .-|.+++|+.||..|++ .-+|..|||.-.-..........-
T Consensus 140 ~tdleav~~~iee~g~d--cilci~sttscfapr~pd~leaiaaica~~di-----phivnnayglqsee~i~~iaa~~~ 212 (432)
T KOG3843|consen 140 ITDLEAVEAIIEELGED--CILCIHSTTSCFAPRSPDNLEAIAAICAAHDI-----PHIVNNAYGLQSEECIHKIAAAAE 212 (432)
T ss_pred HHhHHHHHHHHHHhCCc--eEEEEeecccccCCCCCchHHHHHHHHHccCc-----hhhhccccccchHHHHHHHHHHhh
Confidence 46899999999887542 222323333322 34789999999999999 889999987532211111100111
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEe-ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQIT-RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~-~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
..++|.++-|..|.+++|.|..++.. ++.+++.+.. .| .|..+..+++.+...+-++|+.++.+...+.
T Consensus 213 ~grida~vqsldknf~vpvggaiia~fk~n~iq~iak--~y--------pgrasa~ps~dllitll~~gqn~f~e~~~eq 282 (432)
T KOG3843|consen 213 CGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK--MY--------PGRASASPSLDLLITLLSLGQNAFKELFGEQ 282 (432)
T ss_pred hccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH--hC--------CCccccCccHHHHHHHHHhchhHHHHHHHHH
Confidence 22489999999999999988666553 3445444321 23 2323334467777788888999998888877
Q ss_pred HHHHHHHHHHHHh
Q 011842 374 LRNAHYLKDRLLD 386 (476)
Q Consensus 374 ~~~a~~l~~~L~~ 386 (476)
.++--+++.++.+
T Consensus 283 kemf~~l~~ki~~ 295 (432)
T KOG3843|consen 283 KEMFLKLRNKIIK 295 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00013 Score=69.22 Aligned_cols=315 Identities=14% Similarity=0.102 Sum_probs=186.9
Q ss_pred hHHHHHHHHHhhCCCCC---CcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH----hhC
Q 011842 110 YGALAQLQHFSINNLGD---PFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR----EVF 182 (476)
Q Consensus 110 ~~~l~~~l~~~~n~~g~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~----~~~ 182 (476)
.+.+.++....+|-.|. ..+.|+.+.....+.......+.+|++++. ++.++|..||...-+.|+..-+ .-.
T Consensus 20 ~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPd-n~~vlf~QGGGt~qFaAv~lNL~glK~g~ 98 (370)
T KOG2790|consen 20 ESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPD-NYKVLFLQGGGTGQFAAVPLNLIGLKHGR 98 (370)
T ss_pred HHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCC-ceeEEEEeCCCcccccccchhhhccccCC
Confidence 34555555555442222 234455555567888888999999999995 5778888877666665543311 111
Q ss_pred CCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--CCc-cCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-cCHHHHHH
Q 011842 183 PDGILYASRESHYSVFKAARMYRMECVKVDCLI--SGE-IDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQ 258 (476)
Q Consensus 183 p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~g~-~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ 258 (476)
+-+-|++...+--+..++-++--...+..+..+ -|. -|.+.++. .++.. +|-.....|..|.- +++.
T Consensus 99 ~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~---yvyyCaNETVHGVEf~~~P---- 169 (370)
T KOG2790|consen 99 CADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDAS---YVYYCANETVHGVEFDFIP---- 169 (370)
T ss_pred ccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCcc---EEEEecCceeeceecCCCC----
Confidence 345677776666666666554333343333321 122 24444332 22222 67776777777764 2222
Q ss_pred HHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhh-cCCc---cc
Q 011842 259 TLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL-SSNV---EY 334 (476)
Q Consensus 259 ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l-~~~~---~y 334 (476)
+-.-+|. .+++|-......-| +|+.. .+.|.....|..+ |+|..++++|+.++... ...+ +|
T Consensus 170 ~~~~~~~-----vlVaDmSSnflSrp-------vDvsk-~gvi~aGAQKN~G-~aG~Tvvivr~dllg~~~~~tP~v~dy 235 (370)
T KOG2790|consen 170 VNDPKGA-----VLVADMSSNFLSRP-------VDVSK-FGVIFAGAQKNVG-PAGVTVVIVRKDLLGNALDITPSVLDY 235 (370)
T ss_pred CCCCCCc-----eEEEecccchhcCC-------ccchh-cceEEeccccccC-ccccEEEEEehhhhcccccCCccccce
Confidence 1223566 78899764322222 55543 5778889999998 89999999999875322 2222 23
Q ss_pred cCC-CCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHHHHHHHHHHHhc-CCeEeec-CC---eeEEEEecCCc
Q 011842 335 LAS-RDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRNAHYLKDRLLDA-GISAMLN-EL---SSTVVFERPQD 407 (476)
Q Consensus 335 l~~-~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~-~~---~~iv~f~~~~~ 407 (476)
-.. ...++..+.+.+.....-..++++-. -|+.++.+...+.++.+++.|.+. |+..+.- +. -..|+|+..++
T Consensus 236 k~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d 315 (370)
T KOG2790|consen 236 KIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD 315 (370)
T ss_pred eeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecch
Confidence 111 12345555555443333344555433 367888888888999999999886 6655432 21 25688988754
Q ss_pred ---HHHhhce----eecc----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 408 ---EEFVRRW----QLAC----QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 408 ---~~~~~~~----~l~~----~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+|+++- .+.. +-+.+|.|+--..|.+++.++++-|++..+
T Consensus 316 ~Le~eFLkeA~~~~mv~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 316 ELEAEFLKEAAKEHMVQLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred HHHHHHHHHHHHhhhhccccccccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 2332211 1121 225689888888899999999998877543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00011 Score=70.07 Aligned_cols=287 Identities=16% Similarity=0.135 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-CCcEEEecCCCchHHHHHHHHc------C--C-e-
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-PDGILYASRESHYSVFKAARMY------R--M-E- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-p~~~Vl~s~~~H~S~~~~~~~~------G--~-~- 207 (476)
++-+-+....+.|-+++ ..+|+++|++||-+|++.+|+.. ..|+|..+...|.-+....++. | . +
T Consensus 87 ~lv~cA~~l~stlPeLs----vc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kp 162 (452)
T KOG1403|consen 87 ELVQCARTLTSTLPELS----VCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKP 162 (452)
T ss_pred HHHHHHHHHhhcCCCce----EEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCC
Confidence 44444444445544543 48999999999999999999853 3566666554443332222222 1 1 1
Q ss_pred --EEEEeCCC--CC-------------ccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC----HHHHHHHHHHh
Q 011842 208 --CVKVDCLI--SG-------------EIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEES 263 (476)
Q Consensus 208 --v~~v~~~~--~g-------------~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~ 263 (476)
+..-|+.. .| ..=.+.+++.+++. .......++.+-.+.-|.+-| ++.+++..+.+
T Consensus 163 d~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~a 242 (452)
T KOG1403|consen 163 DYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSA 242 (452)
T ss_pred ceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcC
Confidence 22223321 11 12224556655432 222223334344555676655 67888999999
Q ss_pred CCCCCceEEEEecCcccccccccccCCCCCCcc--c-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCC
Q 011842 264 GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK--P-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRD 339 (476)
Q Consensus 264 g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~--~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~ 339 (476)
|- ..+.|+++-|+-- ..++. |.+.. - .|+++.. |-++-+.+.+.+.++.+..+++.. ...|+.
T Consensus 243 GG-----v~IaDEVQvGFGR-vG~hy--Wafq~y~fiPDIVtmg--KpmGNGhPVa~VattkeIA~Af~atgv~YFN--- 309 (452)
T KOG1403|consen 243 GG-----VCIADEVQVGFGR-VGSHY--WAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTKEIAQAFHATGVEYFN--- 309 (452)
T ss_pred CC-----eEEeehhhhcccc-cchhh--hhhhhhccccchheec--ccCCCCCeeeEEeccHHHHHHhccccceehh---
Confidence 99 9999999865422 12222 33321 1 4666644 777778889999999998888854 567764
Q ss_pred CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC-eEeecCCeeEEEE-----------ecCCc
Q 011842 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI-SAMLNELSSTVVF-----------ERPQD 407 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~-~~~~~~~~~iv~f-----------~~~~~ 407 (476)
++.|++ ...++.+ +.++.... ++..++..+.-.+|...|+.... ..+......+-.| +.|+.
T Consensus 310 -TyGGnP-VsCAv~l-aVm~v~e~---E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~t 383 (452)
T KOG1403|consen 310 -TYGGNP-VSCAVGL-AVMRVCED---ENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDT 383 (452)
T ss_pred -ccCCCc-hhHHHHH-HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcH
Confidence 333333 2222222 33333333 34445555566666666655321 1222222212111 12222
Q ss_pred HH---Hh------hceeeccc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 408 EE---FV------RRWQLACQ---GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 408 ~~---~~------~~~~l~~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+ .+ .+..++.. .+.+.+-.-.-.++++++.++..|.+++-
T Consensus 384 k~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT 436 (452)
T KOG1403|consen 384 KEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT 436 (452)
T ss_pred HHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence 11 11 11223333 36666554444578888888888888764
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.7e-05 Score=72.67 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=112.4
Q ss_pred HHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEe-cCCCchHHHHHH----------HHcCCeEEEEeCC
Q 011842 146 DWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYA-SRESHYSVFKAA----------RMYRMECVKVDCL 214 (476)
Q Consensus 146 ~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~-s~~~H~S~~~~~----------~~~G~~v~~v~~~ 214 (476)
+-+|+.+|.+..-..- -.-+||.|+-.|+...++ |+|+++. ...-|....... +-+|++.+.||+.
T Consensus 72 ~vyA~vf~aE~a~VRp-q~isGTHAI~~aLfg~LR--pgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt 148 (416)
T COG4100 72 RVYAQVFGAEAALVRP-QIISGTHAIACALFGILR--PGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLT 148 (416)
T ss_pred HHHHHHhccccceeee-eeecchhHHHHHHHhccC--CCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccc
Confidence 4578888887521111 234889999999888766 9887654 333344443332 3346677889998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEee--C--CCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNI--G--TTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~--g--tt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.+|.+|.+.++..+.++++ +|.+.- | --+.=.+++|++++++.|+-| +|+.+.||.+||-++-.. .+
T Consensus 149 ~~gkiD~~~v~~~i~~~tk---li~IQRS~GY~~RpS~~I~eI~~~i~~vk~in---pn~ivFVDNCYGEFvE~~-EP-- 219 (416)
T COG4100 149 ADGKIDIQAVKTAISDRTK---LIGIQRSKGYAWRPSLSIAEIEEMITFVKEIN---PNVIVFVDNCYGEFVEEK-EP-- 219 (416)
T ss_pred cCCcccHHHHHHhcCccce---EEEEEeccCcCCCCcccHHHHHHHHHHHHhcC---CCEEEEEeccchhhhhcc-Cc--
Confidence 9999999999999998886 555542 2 223334577888888888755 366999999998765421 11
Q ss_pred CCCCcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhh
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVL 328 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l 328 (476)
.+ -++|.+..|.=|.-+++ ...|++..|.++++..
T Consensus 220 -t~--vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 220 -TH--VGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred -cc--cchhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence 11 23888998888876543 3457777777776543
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.026 Score=59.55 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=177.4
Q ss_pred CCCCcHHHHHHHHHHHHhccc--ccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHH--HHHH--HHHHHH
Q 011842 76 DKEAYMAGVLARYRKTLMERT--KHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQ--FEVG--VLDWFA 149 (476)
Q Consensus 76 ~~~~~~~~il~~~~~~~~~~~--~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~--le~~--~~~~la 149 (476)
+.+..-.+.+..+.+...++. ..|+|.-.+-...+. .++...+.|.+-...+.|+.....+ ||.- ....++
T Consensus 97 ~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP~---~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~ 173 (1001)
T KOG2040|consen 97 DKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVPA---VILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMIT 173 (1001)
T ss_pred CCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCcH---HHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhh
Confidence 345556677777776655442 236673333332222 2344455565433333344322211 2221 235677
Q ss_pred HHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH----HcCCeEEEEeCCCCCccCHHHHH
Q 011842 150 RLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR----MYRMECVKVDCLISGEIDCADFK 225 (476)
Q Consensus 150 ~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~----~~G~~v~~v~~~~~g~~D~~~Le 225 (476)
++.|++-.+ .-+.--||.|--...++.+. .++...+++...|+-....++ -+|+++... |+ +
T Consensus 174 dlTGL~~aN--ASLLDEgTAaaEAm~l~~~~-~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~--------~~---~ 239 (1001)
T KOG2040|consen 174 DLTGLPMAN--ASLLDEGTAAAEAMALCNRI-NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS--------DI---K 239 (1001)
T ss_pred hccCCcccc--hhhhccchhHHHHHHHHHhh-cccceEEecCCCCcchhhhhhccccccceeEEec--------CH---H
Confidence 888888543 33333444333222222222 244558888889975544332 224443222 22 2
Q ss_pred HHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcC
Q 011842 226 AKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSG 305 (476)
Q Consensus 226 ~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~ 305 (476)
+.-... +...-|.+..|.| .|.+.|..++++.+++.|. .+++--- ...+...+.. +.-++|+...|+
T Consensus 240 ~~~~s~-~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s-----~vv~atD--LLaLtiLrpP----gefGaDIavGSs 306 (1001)
T KOG2040|consen 240 EADYSS-KDVSGVLVQYPDT-EGSVLDFDELVELAHANGS-----LVVMATD--LLALTILRPP----GEFGADIAVGSS 306 (1001)
T ss_pred Hhhccc-cceeEEEEEcCCC-CCcccCHHHHHHHhhccCc-----eEEEeeh--hhHHHccCCh----hhcCceeeeccc
Confidence 221111 2223466655654 5899999999999999997 5443211 1111111211 112489999998
Q ss_pred CCCCC----CCCCceeEEeehhhhhhhcCC-----ccccCC---------------CC--CcccCCCCChhHHH-H-HHH
Q 011842 306 HKFVG----CPMPCGVQITRMEHINVLSSN-----VEYLAS---------------RD--ATIMGSRNGHAPIF-L-WYT 357 (476)
Q Consensus 306 hK~l~----~p~~~G~l~~~~~~~~~l~~~-----~~yl~~---------------~~--~~~~~sr~~~~~l~-~-~~~ 357 (476)
..++- +++-.|++.+++++.+.++-. .+-+.. .| .+=.|+. .+.++ . ...
T Consensus 307 QRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTA--QALLANmaAmy 384 (1001)
T KOG2040|consen 307 QRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTA--QALLANMAAMY 384 (1001)
T ss_pred cccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHH--HHHHHHHHHHH
Confidence 87643 223356677777665443211 111100 00 0111221 11122 1 112
Q ss_pred HHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeec-ccCCEEEEEEcCC
Q 011842 358 LNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLA-CQGNIAHVVVMPN 430 (476)
Q Consensus 358 l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~-~~~~~lRv~~~~~ 430 (476)
.-+.|.+|++++.++.+..+.+|...|+..|..+.-.+-.-++-++... .+++. +++++. -..+.+-+++-..
T Consensus 385 aiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel~~k~fFDTLkI~~~~s~~~~l~rA~~~~iNlr~~ed~tigvslDET 464 (1001)
T KOG2040|consen 385 AIYHGPHGLKEIARRVHNLTLILAEGLKNAGHELQHKPFFDTLKIRCGCSAEEVLDRAAKRQINLRLVEDGTIGVSLDET 464 (1001)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhhccccccceEEEEecCcHHHHHHHHHhhcCceEEeecCceEEeeccc
Confidence 2456999999999999999999999999888543333322333344443 22221 223332 2456788889999
Q ss_pred CCHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIE 445 (476)
Q Consensus 431 ~T~edid~~~~~l~~ 445 (476)
++.+|+|.++..+.+
T Consensus 465 v~~~DvddLl~vf~~ 479 (1001)
T KOG2040|consen 465 VTEKDVDDLLWVFNE 479 (1001)
T ss_pred ccHHHHHHHHHHHcc
Confidence 999999999999863
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0043 Score=60.85 Aligned_cols=207 Identities=16% Similarity=0.136 Sum_probs=115.1
Q ss_pred CHHHHHHHHHcC--CCCcEEEEEeeC-CCcccc----ccCHHHHHHHHHHhCCCCCceEEEEecCccccc--ccccccCC
Q 011842 220 DCADFKAKLLQN--KDKPAIINVNIG-TTVKGA----VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM--MPFVKKAP 290 (476)
Q Consensus 220 D~~~Le~~l~~~--~~~p~~vv~t~g-tt~tG~----id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~--~~~~~~~~ 290 (476)
.++++|+.|.+. .+.|..-++..| .+.-|. -+=+..+.+|+++||+ -++||+++-|+- ..+..|.
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v-----~fivDEVQTGgGaTGk~WaHe- 327 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGV-----AFIVDEVQTGGGATGKFWAHE- 327 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCe-----EEEeeeeecCCCccCceeeeh-
Confidence 457788888654 234654333333 444343 3558999999999999 999999995432 2222222
Q ss_pred CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.++.....|.+|+| +|+.. .| ++..+++ .....|-.. .|.+|.+ ...+-+-..++.+.. +..+
T Consensus 328 hw~l~~PpD~vTFS-KK~q~----gG-ffh~~~f----rpn~pYrif--NTWmGdP--~k~lll~~vv~~I~~---~~Ll 390 (484)
T KOG1405|consen 328 HWNLDSPPDVVTFS-KKFQT----GG-FFHDEEF----RPNEPYRIF--NTWMGDP--SKNLLLEEVVQEIKR---EDLL 390 (484)
T ss_pred hcCCCCCccceehh-hhhhc----Cc-cccCccc----CCCchHHHh--hhhcCCh--HHHHHHHHHHHHHhH---HHHH
Confidence 25555568988876 45443 23 3434332 222233211 1233332 112333333333322 3455
Q ss_pred HHHHHHHHHHHHHHHhc----CCeEe-ecCCeeEEEEecCCcH---HHh-----hceee-cccCCEEEEEEcCCCCHHHH
Q 011842 371 QKCLRNAHYLKDRLLDA----GISAM-LNELSSTVVFERPQDE---EFV-----RRWQL-ACQGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~----g~~~~-~~~~~~iv~f~~~~~~---~~~-----~~~~l-~~~~~~lRv~~~~~~T~edi 436 (476)
+.+...-++|..+|.++ |...- .......+.|..|.+. .+. .+.++ -|....+|+..+--.++...
T Consensus 391 ~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha 470 (484)
T KOG1405|consen 391 NNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPSGSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHA 470 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCChHHHHHHHHHHHHcCceecccccceeeeccceeehhhhH
Confidence 66666777787777664 22111 1112344567776532 222 22222 24556788888888899999
Q ss_pred HHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRST 449 (476)
Q Consensus 437 d~~~~~l~~~~~~ 449 (476)
+-|++.+.++.+.
T Consensus 471 ~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 471 DIFLDIFDKILAG 483 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887653
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.051 Score=52.68 Aligned_cols=272 Identities=11% Similarity=0.113 Sum_probs=156.1
Q ss_pred ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCC-eEEEEeC--CCCCccCHHHHHHHHHcCCCCc
Q 011842 159 YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM-ECVKVDC--LISGEIDCADFKAKLLQNKDKP 235 (476)
Q Consensus 159 ~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~-~v~~v~~--~~~g~~D~~~Le~~l~~~~~~p 235 (476)
..|+-+-+||.|+..+.--.-..+++..||+|.++........+-.|. .+...+. .++-.+|++.+...|+..+..-
T Consensus 100 v~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~s 179 (410)
T KOG1412|consen 100 VFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGS 179 (410)
T ss_pred ccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCc
Confidence 347778899999988765554556788899999998888888888885 4555554 2345789999988888765433
Q ss_pred EEEEEeeCCCcccc---ccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC----Ccccc-cEEEEcCCC
Q 011842 236 AIINVNIGTTVKGA---VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS----FKKPI-GSVSVSGHK 307 (476)
Q Consensus 236 ~~vv~t~gtt~tG~---id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~----~~~~~-Dsi~~s~hK 307 (476)
+++.-....++||. .+...+|+++.++.+. +...|-||-|+..-.... ..+. +..+. -+++-|+.|
T Consensus 180 i~iLhaCAhNPTGmDPT~EQW~qia~vik~k~l-----f~fFDiAYQGfASGD~~~-DawAiR~fV~~g~e~fv~QSFaK 253 (410)
T KOG1412|consen 180 IIILHACAHNPTGMDPTREQWKQIADVIKSKNL-----FPFFDIAYQGFASGDLDA-DAWAIRYFVEQGFELFVCQSFAK 253 (410)
T ss_pred EEeeeccccCCCCCCCCHHHHHHHHHHHHhcCc-----eeeeehhhcccccCCccc-cHHHHHHHHhcCCeEEEEhhhhh
Confidence 33333334777774 2447889999999999 999999986654311111 1111 11222 356778888
Q ss_pred CCC-CCCCceeE--Eeehh-hh----hhhc--CCccccCCCCCcccCCCCCh------hHHHHHHHHHHhChhcHHHHHH
Q 011842 308 FVG-CPMPCGVQ--ITRME-HI----NVLS--SNVEYLASRDATIMGSRNGH------APIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 308 ~l~-~p~~~G~l--~~~~~-~~----~~l~--~~~~yl~~~~~~~~~sr~~~------~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
.+| -.-+.|-+ ++++. .+ ..+. ....|-. ++-.|.|-.+ ....+| ...++.+-.
T Consensus 254 NfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SN---PPAyGArIV~kvL~tP~lre~W-------~~sik~Mss 323 (410)
T KOG1412|consen 254 NFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSN---PPAYGARIVHKVLSTPELREQW-------IQSIKTMSS 323 (410)
T ss_pred hcccccccccceEEEecChhHHHHHHHHHHHHHhhccCC---CcchhhHHHHHHhcCHHHHHHH-------HHHHHHHHH
Confidence 554 34455544 34443 21 1111 1111110 1111222111 011222 245666777
Q ss_pred HHHHHHHHHHHHHHhcCCeE---eecCCeeEEEEecCCcH---HHhhcee--ecccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 372 KCLRNAHYLKDRLLDAGISA---MLNELSSTVVFERPQDE---EFVRRWQ--LACQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv~f~~~~~~---~~~~~~~--l~~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
|..+++..|++.|..++-.- -......+.+|....+. .+.+... +-..| |++++ ..+...+|.+..+|
T Consensus 324 RI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~G---RInis-GLN~~NveyVAkAI 399 (410)
T KOG1412|consen 324 RIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDG---RINIS-GLNMKNVEYVAKAI 399 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCC---cEeee-ccccccHHHHHHHH
Confidence 88888888999888764210 01123455555543321 2233222 22233 55554 34556788888888
Q ss_pred HHHHHHH
Q 011842 444 IENRSTW 450 (476)
Q Consensus 444 ~~~~~~~ 450 (476)
.+..+.+
T Consensus 400 de~Vr~~ 406 (410)
T KOG1412|consen 400 DETVRAI 406 (410)
T ss_pred HHHHHhh
Confidence 8877654
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.045 Score=54.07 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHHHcCC-CCCcccEEEcCCchhHHHHHHHHHHhh----CCCcEEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 137 SRQFEVGVLDWFARLWEL-ENNEYWGYITNCGTEGNLHGILVGREV----FPDGILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~-~~~~~~g~~t~ggt~An~~al~aa~~~----~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
..+||+++++ |.++.|- -.+...++|.+|+|+-.+.++.++-.. .+...|+...+-|.++.....++.-..-..
T Consensus 45 s~eL~~~Ir~-LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w 123 (363)
T PF04864_consen 45 SPELERQIRR-LHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKW 123 (363)
T ss_dssp -HHHHHHHHH-HHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEE
T ss_pred cHHHHHHHHH-HHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccc
Confidence 3578877665 4556664 334456888888898888877765332 123467777777777776666554333333
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.-|.. ... ..++..+.+=++|+|+||.|.+-. .+ ++.-+. .++-|=||-+..+.-.
T Consensus 124 ~Gda~------~~~---~~~~~~~~IElVTSPNNPDG~lr~--~V---~~g~~~-----k~I~D~AYYWPhyTpI----- 179 (363)
T PF04864_consen 124 AGDAS------NFK---NSDNPSPYIELVTSPNNPDGQLRE--AV---LNGSSG-----KVIHDLAYYWPHYTPI----- 179 (363)
T ss_dssp EEECC------CGT---T-S-CCGEEEEEESS-TTT--------S---STTTEE-----EEEEE-TT-STTTS-------
T ss_pred cccHH------hhc---cCCCCCCeEEEEeCCCCCcccccc--hh---cCCCCc-----ceeeeeeeeccccccc-----
Confidence 32211 111 222345778889999999998732 11 122222 6788999876554311
Q ss_pred CCCcccccEEEEcCCCCC-CCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCC-hhHHHHHHH-HHHhChh---
Q 011842 292 VSFKKPIGSVSVSGHKFV-GCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNG-HAPIFLWYT-LNRKGYK--- 364 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~-~~~l~~~~~-l~~~g~~--- 364 (476)
.....-|+..++..|.- -++.+.||-++|++- .+.+ ..|+.- .++..||-. ..++++..+ +...+..
T Consensus 180 -~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM---~~y~~l--nTiGvS~dsQLRa~kiLk~v~~~~~~~~~~ 253 (363)
T PF04864_consen 180 -TAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKM---TKYMEL--NTIGVSRDSQLRALKILKVVLDGYGTEKGT 253 (363)
T ss_dssp --S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHH---HHHHHH--HCSS--HHHHHHHHHHHHHHHHHCCHHTTT
T ss_pred -CCCCCCceEEEEEecccCccccccceeeecCHHHHHHH---HHHHHH--hcccCcHHHHHHHHHHHHHHHhcccCCCCc
Confidence 11112478888888844 478899999999974 3333 234321 123334321 122332222 1222211
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-------------eEEEE-ecCC-----cHHHhhceeec------
Q 011842 365 --GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-------------STVVF-ERPQ-----DEEFVRRWQLA------ 417 (476)
Q Consensus 365 --g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-------------~iv~f-~~~~-----~~~~~~~~~l~------ 417 (476)
-+.--.+.+.++=+.|++.+...+.+.+..-.. +-..+ +... -.++.+.-.+-
T Consensus 254 ~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~G~~ 333 (363)
T PF04864_consen 254 EDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRSGVL 333 (363)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEEGGG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCCCCc
Confidence 112222334444455666676666555432111 11122 1111 12333333221
Q ss_pred --ccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 --CQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 --~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.+..++|+++. -++++.|.|++.|..+
T Consensus 334 fga~~ryVRlSml--~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 334 FGADSRYVRLSML--KRDDDFDQLLERLSKL 362 (363)
T ss_dssp GTS-TTEEEEESS--S-HHHHHHHHHHHHCC
T ss_pred cCCCCCeEEEecc--CCHHHHHHHHHHHHhh
Confidence 22468898764 7899999999988653
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0058 Score=54.18 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHcC--CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch
Q 011842 136 HSRQFEVGVLDWFARLWE--LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY 195 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g--~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~ 195 (476)
+..++++++++|+.+.+| .+.+..++++|+|++.|+..++.+..+ ||+.|+++++.|.
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--pGD~VlVp~P~Y~ 152 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--PGDAFLVPTPYYA 152 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--CCCEEEEeCCCCC
Confidence 567999999999999988 443445799999999999999888887 9999999998874
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.28 Score=48.45 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=155.3
Q ss_pred EEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC--CCCCccCHHHHHHHHHcCCCCcEEEE
Q 011842 162 YITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC--LISGEIDCADFKAKLLQNKDKPAIIN 239 (476)
Q Consensus 162 ~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~--~~~g~~D~~~Le~~l~~~~~~p~~vv 239 (476)
+-|-+||.|.-.+..-....+|...|+++.++.....+.....|+.+..+.. ..+..+|.+-+-+.|.+....-+++.
T Consensus 124 vQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilL 203 (427)
T KOG1411|consen 124 VQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILL 203 (427)
T ss_pred EEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEe
Confidence 3456888887766554444468889999999877766777778887766554 24577898888777766543222333
Q ss_pred EeeCCCcccc---ccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc-cCCCC-CCc-cc-ccEEEEcCCCCCC-C
Q 011842 240 VNIGTTVKGA---VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK-KAPKV-SFK-KP-IGSVSVSGHKFVG-C 311 (476)
Q Consensus 240 ~t~gtt~tG~---id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~-~~~~~-~~~-~~-~Dsi~~s~hK~l~-~ 311 (476)
-....++||. .+..++|.++.++.+. +-+.|.||-|+..-... ....+ -+. .+ --.++-|+.|.+| -
T Consensus 204 haCaHNPTGvDPt~eqw~ki~~~~~~k~~-----~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLY 278 (427)
T KOG1411|consen 204 HACAHNPTGVDPTKEQWEKISDLIKEKNL-----LPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLY 278 (427)
T ss_pred ehhhcCCCCCCccHHHHHHHHHHhhhccc-----cchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchh
Confidence 2234777764 3558899999999999 89999998765432111 11000 011 12 2356677778665 2
Q ss_pred CCCceeE--Eeehh-hhh----hh--cCCccccCCCCCcccCCCCChh------HHHHHHHHHHhChhcHHHHHHHHHHH
Q 011842 312 PMPCGVQ--ITRME-HIN----VL--SSNVEYLASRDATIMGSRNGHA------PIFLWYTLNRKGYKGFQKEVQKCLRN 376 (476)
Q Consensus 312 p~~~G~l--~~~~~-~~~----~l--~~~~~yl~~~~~~~~~sr~~~~------~l~~~~~l~~~g~~g~~~~~~~~~~~ 376 (476)
+-+.|.+ ++++. ... .+ ...+-|. ...+.|+|-... ...+|. ....-+.+|.+.+
T Consensus 279 gERvGa~svvc~~ad~A~rV~SQlk~liRpmYS---nPP~hGArIv~~Il~d~~l~~~W~-------~evk~MadRi~~m 348 (427)
T KOG1411|consen 279 GERVGALSVVCKDADEAKRVESQLKILIRPMYS---NPPLHGARIVATILSDPDLKNQWL-------GEVKGMADRIISM 348 (427)
T ss_pred hhccceeEEEecCHHHHHHHHHHHHHHhccccc---CCCccchhhhhhccCChHHHHHHH-------HHHHHHHHhhhhh
Confidence 3455554 33433 211 11 1233342 123344442211 122442 3456677888889
Q ss_pred HHHHHHHHHhcCCeEee---cCCeeEEEEecCCcH---HHhhceeeccc-CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 377 AHYLKDRLLDAGISAML---NELSSTVVFERPQDE---EFVRRWQLACQ-GNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 377 a~~l~~~L~~~g~~~~~---~~~~~iv~f~~~~~~---~~~~~~~l~~~-~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
++.|.+.|+..|-..-. ...-..++|..-.++ .+.+.+.+-.. .+ |+|+. ..+...++.|.++|.++.
T Consensus 349 R~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT~dG--RiS~a-G~ss~nV~yLa~aih~vt 423 (427)
T KOG1411|consen 349 RQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLTKDG--RISMA-GLSSSNVPYLADAIHAVT 423 (427)
T ss_pred HHHHhHHhhcCCCCccHHHHHHhhheeeecCCCHHHHHHHHhhheeeeccCc--eEeec-cccccCCcccchhhHhHh
Confidence 99999999887643211 123456677654432 23455555322 23 66654 455566777777776654
|
|
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.71 E-value=12 Score=36.76 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCC--ch--HHHHHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRES--HY--SVFKAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~--H~--S~~~~~~~~G~~v~ 209 (476)
..+.||--+-+.+.+ .++-++|-||.+||.....++... .=+.+.++.... +. ...-..+.+|++++
T Consensus 48 K~RKLefll~eal~~-------g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~ 120 (323)
T COG2515 48 KIRKLEFLLGEALRK-------GADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVR 120 (323)
T ss_pred HHHHHHHHHhhhhhc-------CCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEE
Confidence 345555544444332 244789999999998655443332 123455554433 00 12334567799999
Q ss_pred EEeCCCCC--ccCHHHHHHHHHcCCCCcEEEEEeeCCCc---cccccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 210 KVDCLISG--EIDCADFKAKLLQNKDKPAIINVNIGTTV---KGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 210 ~v~~~~~g--~~D~~~Le~~l~~~~~~p~~vv~t~gtt~---tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.++...+. ....+.+.+-+++..++|.+| ..-|+++ .|.+.=..||.+.++++ . .|-.+|.+.-+++
T Consensus 121 ~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvI-p~GG~~~~g~lGyv~~a~Ei~~Q~~~~-~---~fD~vVva~gs~g 192 (323)
T COG2515 121 AVDAGTDIGINASAEELAEEVRKQGGKPYVI-PEGGSSPLGALGYVRLALEIAEQAEQL-L---KFDSVVVAPGSGG 192 (323)
T ss_pred EecCCCChhhchhhHHHHHHHHhcCCCCcEe-ccCCcCccccccHHHHHHHHHHHHhhc-c---CCCEEEEeCCCcc
Confidence 98876555 445577778888777777555 4455777 45556677888888874 3 1144555554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 476 | ||||
| 3f9t_A | 397 | Crystal Structure Of L-tyrosine Decarboxylase Mfna | 1e-15 | ||
| 2okj_A | 504 | The X-Ray Crystal Structure Of The 67kda Isoform Of | 1e-13 | ||
| 3vp6_A | 511 | Structural Characterization Of Glutamic Acid Decarb | 2e-13 | ||
| 2okk_A | 497 | The X-Ray Crystal Structure Of The 65kda Isoform Of | 1e-12 | ||
| 2dgk_A | 452 | Crystal Structure Of An N-terminal Deletion Mutant | 1e-07 | ||
| 1pmm_A | 466 | Crystal Structure Of Escherichia Coli Gadb (Low Ph) | 1e-07 | ||
| 1xey_A | 466 | Crystal Structure Of The Complex Of Escherichia Col | 1e-07 | ||
| 3hbx_A | 502 | Crystal Structure Of Gad1 From Arabidopsis Thaliana | 1e-05 | ||
| 2qma_A | 497 | Crystal Structure Of Glutamate Decarboxylase Domain | 4e-05 |
| >pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504 | Back alignment and structure |
|
| >pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511 | Back alignment and structure |
|
| >pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497 | Back alignment and structure |
|
| >pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of Escherichia Coli Gadb In An Autoinhibited State (aldamine) Length = 452 | Back alignment and structure |
|
| >pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph) Length = 466 | Back alignment and structure |
|
| >pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada With Glutarate At 2.05 A Resolution Length = 466 | Back alignment and structure |
|
| >pdb|3HBX|A Chain A, Crystal Structure Of Gad1 From Arabidopsis Thaliana Length = 502 | Back alignment and structure |
|
| >pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of Diaminobutyrate-Pyruvate Transaminase And L-2,4-Diaminobutyrate Decarboxylase From Vibrio Parahaemolyticus Length = 497 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 3e-97
Identities = 86/394 (21%), Positives = 159/394 (40%), Gaps = 47/394 (11%)
Query: 84 VLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQH-----FSINNLGDPFIESNYGVHSR 138
+L +K K+ G + + F NLGDP + ++
Sbjct: 15 ILEELKKYRSLDLKYEDGNI--FGSMCSNVLPITRKIVDIFLETNLGDPGLFKG----TK 68
Query: 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGI-----------L 187
E + L + + +G+I + GTE NL + + ++ + +
Sbjct: 69 LLEEKAVALLGSLLNNK--DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKI 126
Query: 188 YASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVK 247
+H+S K M +E + ID K +++ D II GTT
Sbjct: 127 IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVK-DAVEDYDVDGII-GIAGTTEL 184
Query: 248 GAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS-------FKKPIGS 300
G +D+++ + + +E+ YIH D A GL++PF+ K F + S
Sbjct: 185 GTIDNIEELSKIAKENNI-----YIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDS 239
Query: 301 VSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYL-ASRDATIMGSRNGHAPIFLWYTL 358
+++ HK CP+P G + + + + L + YL +R ATI+G+R G + L
Sbjct: 240 ITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVL 299
Query: 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVRR----- 413
G +G +K V +C+ N YL +L + ++ + + V E +E ++
Sbjct: 300 RYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDEDYKEVCKKLRDRG 359
Query: 414 WQL-ACQGNIA-HVVVMPNVTIDKLDDFLNELIE 445
+ C A +VVMP++ + +D+F+ L
Sbjct: 360 IYVSVCNCVKALRIVVMPHIKREHIDNFIEILNS 393
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 9e-69
Identities = 74/374 (19%), Positives = 121/374 (32%), Gaps = 51/374 (13%)
Query: 121 INNLGDPFIESNYGVH-----SRQFEVGVLDWFARLW---ELENNEYWGYITNCGTEGNL 172
++ L D I N+ S ++ ++ A LW +N + G T +E +
Sbjct: 58 VHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACM 117
Query: 173 HGILVGREVF----------PDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222
G + + + D K AR + +E ++
Sbjct: 118 LGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPM--RPGQLFM 175
Query: 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDR-FYIHCDGALFGL 281
D K + + + G T G + + L++ +H D A G
Sbjct: 176 DPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 235
Query: 282 MMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASR 338
+ PFV F+ + S+S SGHKF P+ CG I R E L NV+YL +
Sbjct: 236 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQ 295
Query: 339 DA--TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAM 392
I SR I +Y R G +G+ K + A YL D + G I
Sbjct: 296 IGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTG 355
Query: 393 LNELSSTVVFERPQDEEFV-------------RRWQL---ACQGNIAH-----VVVMPNV 431
+ V + +D E R WQ+ G ++
Sbjct: 356 RPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGF 415
Query: 432 TIDKLDDFLNELIE 445
+D + L +
Sbjct: 416 EMDFAELLLEDYKA 429
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-56
Identities = 63/367 (17%), Positives = 125/367 (34%), Gaps = 46/367 (12%)
Query: 119 FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLW---ELENNEYWGYITNCGTEGNLHGI 175
N D Y V + + + ++ A L+ E G T +E +
Sbjct: 79 SINKNYVDMDE---YPV-TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAG 134
Query: 176 LVGREVFPDGI-----------LYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADF 224
L + + + + K AR + +E +V S D
Sbjct: 135 LAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL--SEGYYVMDP 192
Query: 225 KAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQD-RFYIHCDGALFGLMM 283
+ + + + +G+T+ G +D+ L+ L E IH D A G +
Sbjct: 193 QQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIA 252
Query: 284 PFVKKAPKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDA 340
PF+ + F+ P + S++VSGHK+ G I R + L ++ YL +
Sbjct: 253 PFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQP 312
Query: 341 --TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS- 397
T+ S+ I +Y L R G++G++ ++ C N L++ L ++++
Sbjct: 313 TFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372
Query: 398 -STVVFERPQDEEFV----------RRWQLACQGN--------IAHVVVMPNVTIDKLDD 438
V F W + + VV+ + + +
Sbjct: 373 VPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAER 432
Query: 439 FLNELIE 445
+ ++ +
Sbjct: 433 LVIDIEK 439
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 1e-39
Identities = 67/375 (17%), Positives = 125/375 (33%), Gaps = 41/375 (10%)
Query: 100 LGYPYNLDFDYGALAQ--LQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLW--ELE 155
G Y+ D + A S +N P + + +FE V+ A + +
Sbjct: 102 SGAVYHGDEHHIAFLNEVYALQSQSNPLHPDL----WPSTAKFEAEVVAMTAHMLGGDAA 157
Query: 156 NNEYWGYITNCGTEGNLHGILVGREVFPD--GI----LYASRESHYSVFKAARMYRMECV 209
G +T+ GTE L + R+ GI +H + KAA+ + ++ V
Sbjct: 158 GGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLV 217
Query: 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDR 269
+ D A + + N ++ + G VD + + E G
Sbjct: 218 RTPLDADYRADVAAMREAITPN---TVVVAGSAPGYPHGVVDPIPEIAALAAEHGI---- 270
Query: 270 FYIHCDGALFGLMMPFVKKA----PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEH 324
H D L G ++P+ ++ P F+ + SVS HK+ V + R
Sbjct: 271 -GCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPD 329
Query: 325 I--NVLSSNVEYLASRDA--TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYL 380
+ ++ T GSR G W + G +G+ ++ L+ A L
Sbjct: 330 LLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRL 389
Query: 381 KDRLLDAGISAMLNELSSTVVFERPQDEEFV-------RRWQLACQ---GNIAHVVVMPN 430
K + +L + + + + R W+L + + +
Sbjct: 390 KAGVRAIPSLKILGDPLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRH 449
Query: 431 VTIDKLDDFLNELIE 445
+D FL +L +
Sbjct: 450 TEPGVVDRFLADLQD 464
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 4e-37
Identities = 67/377 (17%), Positives = 127/377 (33%), Gaps = 41/377 (10%)
Query: 98 HHLGYPYNLDFDYGALAQ--LQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE 155
G Y+ D L + + + N P + + R+ E V+ R++
Sbjct: 68 KVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDV---FPA-VRKMESEVVSMVLRMFNAP 123
Query: 156 NNEYWGYITNCGTEGNLHGILVGREVFPD--GI----LYASRESHYSVFKAARMYRMECV 209
++ G T+ GTE L L + GI + A +H KAA + M+
Sbjct: 124 SDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLR 183
Query: 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDR 269
V+ D ++ + G DD++ + + ++
Sbjct: 184 HVEL--DPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKL---- 237
Query: 270 FYIHCDGALFGLMMPFVKKA-----PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRME 323
+H D L ++ F++KA P + F+ P + S+S HK+ P V + R
Sbjct: 238 -PLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNS 296
Query: 324 HI--NVLSSNVEYLASRDA--TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHY 379
+ + N + T+ GSR G + W T+ G G+ + Q+ + A
Sbjct: 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMK 356
Query: 380 LKDRLLDA--GISAMLNELSSTVVFERPQDEEFV-------RRWQLACQGNIA--HVVVM 428
K + + + M N S + F + W H+
Sbjct: 357 FKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT 416
Query: 429 PNVTIDKLDDFLNELIE 445
++ +D+ + L
Sbjct: 417 R-LSAHVVDEICDILRT 432
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 9e-27
Identities = 75/343 (21%), Positives = 120/343 (34%), Gaps = 52/343 (15%)
Query: 81 MAGVLARYRKTLMERTKHH----LGY-PYNLDFDYGALAQLQHFSINNLGDPFIESNYGV 135
+ +L R TL + LD G + + N + + V
Sbjct: 73 LEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDI-IGLAGEWLTSTANTNMFTYEIAPVFV 131
Query: 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE------------VFP 183
E L + + + G + G N++ I+ R P
Sbjct: 132 ---LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP 188
Query: 184 DGILYASRESHYSVFKAARMY---RMECVKVDCLISGEIDCADFKAKLLQNKDK---PAI 237
+L+ S +SHYS+ KA + + C G+I ADF+AK+L+ K K P
Sbjct: 189 KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 248
Query: 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
+N GTTV GA D + + E+ ++H D A G ++ K K+
Sbjct: 249 VNATAGTTVYGAFDPIQEIADICEKYN-----LWLHVDAAWGGGLLMSRKHRHKL---NG 300
Query: 298 IG---SVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS-----------RDAT 341
I SV+ + HK +G + C + + YL D
Sbjct: 301 IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360
Query: 342 IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
I R+ W KG GF+ ++ KCL A YL ++
Sbjct: 361 IQCGRHVDI-FKFWLMWKAKGTVGFENQINKCLELAEYLYAKI 402
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-26
Identities = 62/346 (17%), Positives = 115/346 (33%), Gaps = 59/346 (17%)
Query: 81 MAGVLARYRKTLMERTKHH----LGY-PYNLDFDYGALAQLQHFSINNLGDPFIESNYGV 135
+L R R + K LD + ++ S+N + + V
Sbjct: 89 QKQILERCRAVIRYSVKTGHPRFFNQLFSGLDP-HALAGRIITESLNTSQYTYEIAPVFV 147
Query: 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPDG--------- 185
E VL L + + G G+ N++ + + R +PD
Sbjct: 148 ---LMEEEVLRKLRALVGWSSGD--GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLP 202
Query: 186 --ILYASRESHYSVFKAARM---YRMECVKVDCLISGEIDCADFKAKLLQNKDK---PAI 237
L+ S+E HYS+ K A V G++ D + ++ + + P +
Sbjct: 203 PLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFL 262
Query: 238 INVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297
++ GTTV GA D L+ + + G ++H D A G ++ +
Sbjct: 263 VSATSGTTVLGAFDPLEAIADVCQRHG-----LWLHVDAAWGGSVLLSQTHRHLLD---- 313
Query: 298 IG-----SVSVSGHKFVGCPMPCGVQITR---MEHINVLSSNVEYLAS-----------R 338
G SV+ + HK + + C + + S YL
Sbjct: 314 -GIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTG 372
Query: 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
D + R + LW +G +G ++ + + A YL + +
Sbjct: 373 DKVVQCGRRVDC-LKLWLMWKAQGDQGLERRIDQAFVLARYLVEEM 417
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 69/430 (16%), Positives = 134/430 (31%), Gaps = 78/430 (18%)
Query: 81 MAGVLARYRKTLMERTKH-----HLGY-PYNLDFDYGALAQLQHFSINNLGDPFIESNYG 134
+L K +M H Y P + LA + +I +G + S
Sbjct: 53 FEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSY-PAMLADMLCGAIGCIGFSWAASPAC 111
Query: 135 VHSRQFEVGVLDWFARLWEL-------ENNEYWGYITNCGTEGNLHGILVGRE------- 180
+ E ++DW ++ +L E E G I +E L +L R
Sbjct: 112 T---ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ 168
Query: 181 ----------VFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ 230
V + YAS ++H SV +A + ++ + + + + L +
Sbjct: 169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALER 228
Query: 231 NKDK---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287
+K P + +GTT + D+L V E ++H D A G
Sbjct: 229 DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED-----IWLHVDAAYAGSAF---- 279
Query: 288 KAPKV-SFKKPIG---SVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLASRDAT 341
P+ + S + + HK++ C + + + YL
Sbjct: 280 ICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQG 339
Query: 342 IMGSRN-GHAPI-----F----LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA 391
+ H + F +W+ G KG Q ++K ++ +H + +L
Sbjct: 340 SGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFE 399
Query: 392 MLNELS-STVVF-ERPQDE---EFVRRWQLACQGNIAH-----------VVVMPNVTIDK 435
+ E++ V F + D + R A + ++ + V
Sbjct: 400 VCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGH 459
Query: 436 LDDFLNELIE 445
+ +
Sbjct: 460 VRLAWEHIRG 469
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-25
Identities = 58/282 (20%), Positives = 104/282 (36%), Gaps = 51/282 (18%)
Query: 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE------------------VF 182
E V++W ++L + + G T+ GT+ N G+++ R+
Sbjct: 142 EQKVVNWLCDKYDL-SEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYA 200
Query: 183 PDGILYASRESHYSVFKAARMY---RMECVKVDCLISGEIDCADFKAKLLQNKDK---PA 236
+ S++SH++V K+A + VD G +D + Q K + P
Sbjct: 201 DKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPF 260
Query: 237 IINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296
I GTT GA+DDLD + + ++H DGA G ++ ++
Sbjct: 261 AIVGTAGTTDHGAIDDLDFIADMAVKHD-----MWMHVDGAYGGALI-LSSHKSRLK--- 311
Query: 297 PIG-----SVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLAS--------RDATI 342
G S+SV HK + CG + + L + +YL D +I
Sbjct: 312 --GVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSI 369
Query: 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL 384
++ A + ++ T+ G K L + D +
Sbjct: 370 ATTKRFDA-LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI 410
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 64/368 (17%), Positives = 117/368 (31%), Gaps = 77/368 (20%)
Query: 141 EVGVLDWFARLWEL--------ENNEYWGYITNCGTEGNLHGILVGRE------------ 180
E+ V+DW A++ L +++ G + + +E L +L R+
Sbjct: 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPD 179
Query: 181 -----VFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDK- 234
+ + YAS ++H SV KA + ++ + + + + + ++K +
Sbjct: 180 ADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRG 239
Query: 235 --PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292
P + +GTT A D L + G ++H D A G P+
Sbjct: 240 LVPVFVCATLGTTGVCAFDCLSELGPICAREG-----LWLHIDAAYAGTAF----LCPEF 290
Query: 293 -SFKKPIG---SVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS--------- 337
F K I S + + K++ C + + S N YL
Sbjct: 291 RGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDF 350
Query: 338 RDATIMGSRNGHAPIF----LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLL-DAGISAM 392
I SR F LW+ + G K Q V+ A Y + + D
Sbjct: 351 MHWQIPLSRR-----FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP 405
Query: 393 LNELSSTVVF-ERPQDE---EFVRRWQLACQGNIAH-----------VVVMPNVTIDKLD 437
VVF + + ++ A + + V T D +
Sbjct: 406 AKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDIL 465
Query: 438 DFLNELIE 445
N + +
Sbjct: 466 RDWNLIRD 473
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 70/434 (16%), Positives = 135/434 (31%), Gaps = 89/434 (20%)
Query: 81 MAGVLARYRKTLMERTKH-----HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGV 135
V+ + +M H Y + +A + +I +G +I S
Sbjct: 53 WQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACT 112
Query: 136 HSRQFEVGVLDWFARLWEL-------ENNEYWGYITNCGTEGNLHGILVGRE-------- 180
EV ++DW ++ EL + G I +E L +L +
Sbjct: 113 E---LEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKE 169
Query: 181 ---------VFPDGILYASRESHYSVFKAARM--YRMECVKVDCLISGEIDCADFKAKLL 229
+ + Y S ++H SV +A + ++ V+ + + + A + +
Sbjct: 170 LHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE---NHRMRGAALEKAIE 226
Query: 230 QNKDK---PAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286
Q+ + P V +GTT A D LD + +IH D A G
Sbjct: 227 QDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHN-----LWIHVDAAYAGSAF--- 278
Query: 287 KKAPKV-SFKKPIG---SVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS--- 337
P+ K I S + + HK++ C + +N + + YL
Sbjct: 279 -ICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ 337
Query: 338 ------RDATIMGSRNGHAPIF----LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA 387
R I R F LW+ L G + Q +++ A D +
Sbjct: 338 GSAPDYRHWQIPLGRR-----FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD 392
Query: 388 GISAMLNELS-STVVF-ERPQDE---EFVRRWQLACQGNIAH-----------VVVMPNV 431
+ E++ V F + +E ++R ++ +
Sbjct: 393 SRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFT 452
Query: 432 TIDKLDDFLNELIE 445
+ ++ E+
Sbjct: 453 QSEDMEYSWKEVSA 466
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 8e-23
Identities = 43/339 (12%), Positives = 99/339 (29%), Gaps = 47/339 (13%)
Query: 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGIL-VGREVFPDGILYASRESHY 195
+ ++ T T ++ L R+ + ++ SH
Sbjct: 128 ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHK 187
Query: 196 SVFKAARMYRMECVKVDCLISGE---IDCADFKAKLLQNKDKPAIINV--NIGTTVKGAV 250
S KA M V+ ++ G+ + D + + + + V +
Sbjct: 188 SPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNS 247
Query: 251 DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVG 310
DD+ + + E +GA + + + + K +FK + +V S K +
Sbjct: 248 DDIVEIAKICENYDI-----PHIINGA-YAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLL 301
Query: 311 CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370
P+ G+ V S++ E++ + G + + +L G K + + V
Sbjct: 302 TPIGGGL---------VYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELV 352
Query: 371 QKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQDEEFV------------RRW 414
+ + L + L D L D + R
Sbjct: 353 KNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGI 412
Query: 415 QLACQGNIAHVVVMP----------NVTIDKLDDFLNEL 443
+ ++ V + + + +++L
Sbjct: 413 KKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKL 451
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 3e-08
Identities = 30/202 (14%), Positives = 67/202 (33%), Gaps = 24/202 (11%)
Query: 190 SRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKA--KLLQNKDKPAIINVNIGTTVK 247
R S FK+ E V ++ ++ G+ D KA +Q I+ ++ T+
Sbjct: 168 PRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCF 227
Query: 248 G--AVDDLDLVIQTLEESG---FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302
D L+ + + + + M +++ +V I +
Sbjct: 228 APRVPDRLEELAVICANYDIPHIVNNAYGVQSSKC-----MHLIQQGARV---GRIDAFV 279
Query: 303 VSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362
S K P+ + + N ++ G + + + TL G
Sbjct: 280 QSLDKNFMVPVGGAI---------IAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG 330
Query: 363 YKGFQKEVQKCLRNAHYLKDRL 384
G++K +++ YL +++
Sbjct: 331 SNGYKKLLKERKEMFSYLSNQI 352
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 7e-08
Identities = 30/203 (14%), Positives = 67/203 (33%), Gaps = 26/203 (12%)
Query: 190 SRESHYSVFKAARMYRMECVKVDCLISGE---IDCADFKAKLLQNKDKPAIINVNIGTTV 246
R S FK+ E V ++ ++ G+ D +AK+ + + I+ ++ T
Sbjct: 150 PRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE-HILCLHSTTAC 208
Query: 247 KGAV--DDLDLVIQTLEESG---FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSV 301
D L+ + + + + M +++ +V I +
Sbjct: 209 FAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC-----MHLIQQGARV---GRIDAF 260
Query: 302 SVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361
S K P+ + + N ++ G + + + TL
Sbjct: 261 VQSLDKNFMVPVGGAI---------IAGFNEPFIQDISKMYPGRASASPSLDVLITLLSL 311
Query: 362 GYKGFQKEVQKCLRNAHYLKDRL 384
G G++K +++ YL +L
Sbjct: 312 GCSGYRKLLKERKEMFVYLSTQL 334
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 100.0 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 100.0 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.96 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.95 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.95 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.95 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.95 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.95 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.95 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.95 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.95 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.95 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.94 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.94 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.94 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.94 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.94 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.94 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.94 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.94 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.94 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.94 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.94 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.94 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.94 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.94 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.94 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.93 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.93 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.93 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.93 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.93 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.93 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.93 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.93 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.93 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.93 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.93 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.93 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.93 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.93 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.93 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.93 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.93 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.93 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.92 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.92 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.92 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.92 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.92 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.92 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.92 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.92 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.92 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.92 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.92 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.92 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.92 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.92 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.92 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.91 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.91 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.91 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.91 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.91 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.91 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.91 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.91 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.91 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.91 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.91 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.91 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.91 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.91 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.91 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.9 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.9 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.9 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.9 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.9 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.9 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.9 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.9 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.9 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.9 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.9 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.9 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.9 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.9 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.9 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.89 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.89 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.89 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.89 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.89 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.89 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.89 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.88 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.88 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.88 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.88 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.88 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.88 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.88 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.88 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.88 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.87 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.87 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.87 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.87 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.87 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.87 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.87 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.87 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.87 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.87 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.87 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.87 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.87 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.86 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.86 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.86 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.86 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.86 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.86 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.86 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.86 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.86 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.86 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.86 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.85 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.85 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.85 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.85 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.85 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.85 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.85 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.85 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.85 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.84 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.84 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.84 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.84 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.84 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.84 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.83 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.83 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.83 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.83 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.83 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.72 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.83 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.82 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.82 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.82 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.82 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.82 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.82 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.82 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.82 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.82 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.82 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.81 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.81 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.81 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.81 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.81 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.8 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.8 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.8 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.8 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.79 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.79 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.78 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.76 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.76 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.76 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.7 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.69 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.68 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.66 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.65 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.42 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.41 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.37 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.34 |
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-48 Score=404.16 Aligned_cols=383 Identities=18% Similarity=0.176 Sum_probs=313.2
Q ss_pred ccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcc
Q 011842 60 SCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFI 129 (476)
Q Consensus 60 ~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~ 129 (476)
+++...+|+++.. .+|++|.+.+++++++.+.+.++.+ +|.||+++++. ++.+++++...+|+++..|.
T Consensus 33 ~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 111 (481)
T 4e1o_A 33 RVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVV-HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 111 (481)
T ss_dssp CSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCC-CTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTT
T ss_pred CCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCC-CCCCCCeeEeCCCCCCHHHHHHHHHHHHhCcccCCcC
Confidence 4566667776664 7899999999999999999988876 67899987764 57889999999999888887
Q ss_pred cCccchhhHHHHHHHHHHHHHHcCCCCCc--------ccEEEcCCchhHHHHHHHHHHhh-----------------CCC
Q 011842 130 ESNYGVHSRQFEVGVLDWFARLWELENNE--------YWGYITNCGTEGNLHGILVGREV-----------------FPD 184 (476)
Q Consensus 130 ~~~~~~~~~~le~~~~~~la~l~g~~~~~--------~~g~~t~ggt~An~~al~aa~~~-----------------~p~ 184 (476)
.++ ..+++|+++.+|+++++|++... .+|++|+|||+||++|++++|++ .|+
T Consensus 112 ~~p---~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~ 188 (481)
T 4e1o_A 112 SSP---ACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188 (481)
T ss_dssp TCH---HHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTT
T ss_pred CCc---HHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCC
Confidence 766 78899999999999999998532 36899999999999999999864 157
Q ss_pred cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHH
Q 011842 185 GILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLE 261 (476)
Q Consensus 185 ~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~ 261 (476)
++||+++.+|+|+.+++++.|++++.||+++++.||+++|+++|+++ ..+|++|++++++|++|.++|+++|+++|+
T Consensus 189 ~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~ 268 (481)
T 4e1o_A 189 LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICA 268 (481)
T ss_dssp EEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred eEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHH
Confidence 89999999999999999999999999999989999999999999765 234788999999999999999999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASRD 339 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~~~ 339 (476)
+||+ |+|||+||+++.+..........+.+.+|++++++|||+++|.+||+++++++. .+.+.....|+....
T Consensus 269 ~~~~-----~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~ 343 (481)
T 4e1o_A 269 REGL-----WLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHAN 343 (481)
T ss_dssp HHTC-----EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTT
T ss_pred HcCC-----eEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcc
Confidence 9999 999999999875543333323344456899999999999999999999999873 345555667775432
Q ss_pred ---------CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCCcH-
Q 011842 340 ---------ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQDE- 408 (476)
Q Consensus 340 ---------~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~~- 408 (476)
.++.++|+ +.++++|++++.+|.+++++++++..+++++|.+.|++. ++.++.++..++++|+.++..
T Consensus 344 ~~~~~~~~~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~ 422 (481)
T 4e1o_A 344 SGVATDFMHWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS 422 (481)
T ss_dssp TTTSCCGGGGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH
T ss_pred cCCCCCcccccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH
Confidence 35667877 468999999999999999999999999999999999998 444444566889999875421
Q ss_pred ---HHhhce------eec----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 409 ---EFVRRW------QLA----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 409 ---~~~~~~------~l~----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++.+++ .+. .....+|+++ ++++|++||++++++|+++.+++.+
T Consensus 423 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~~ 480 (481)
T 4e1o_A 423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILS 480 (481)
T ss_dssp HHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 222211 111 1235799985 5778999999999999999887654
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-48 Score=403.97 Aligned_cols=382 Identities=18% Similarity=0.191 Sum_probs=302.2
Q ss_pred ccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcc
Q 011842 60 SCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFI 129 (476)
Q Consensus 60 ~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~ 129 (476)
+++...+|+++.. ++|++|.+++++++++.+.+.++.+ +|.||+++++. ++.+++++...+|+++..|.
T Consensus 28 ~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~ 106 (475)
T 3k40_A 28 RVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVT-HWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWI 106 (475)
T ss_dssp CSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCC-CTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCC
T ss_pred CCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCC-CCCCcCceeeCCCCCcHHHHHHHHHHHHhCccccCcc
Confidence 3555666766654 7899999999999999999988876 67899988764 57889999999999888887
Q ss_pred cCccchhhHHHHHHHHHHHHHHcCCCCCc-------ccEEEcCCchhHHHHHHHHHHhhC-----------------CCc
Q 011842 130 ESNYGVHSRQFEVGVLDWFARLWELENNE-------YWGYITNCGTEGNLHGILVGREVF-----------------PDG 185 (476)
Q Consensus 130 ~~~~~~~~~~le~~~~~~la~l~g~~~~~-------~~g~~t~ggt~An~~al~aa~~~~-----------------p~~ 185 (476)
.++ ..+++|+++.+|+++++|++.+. .+|+||+|||+||++|++++|++. |++
T Consensus 107 ~~p---~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 107 ASP---ACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp CCH---HHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CCc---HHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 766 68899999999999999998531 369999999999999999997641 346
Q ss_pred EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHH
Q 011842 186 ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEE 262 (476)
Q Consensus 186 ~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~ 262 (476)
+||+++.+|+|+.+++++.|++++.||++++| ||+++|+++|+++ ...|++|++++++|++|.++|+++|+++|++
T Consensus 184 ~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~ 262 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 262 (475)
T ss_dssp EEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence 89999999999999999999999999999889 9999999999865 2347889999999999999999999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCCC--
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR-- 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~~-- 338 (476)
||+ |+|||+||+++.+........+.+.+.+|++++++|||+++|.+||+++++++. .+.+.....|+...
T Consensus 263 ~~~-----~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 337 (475)
T 3k40_A 263 HNL-----WIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ 337 (475)
T ss_dssp TTC-----EEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------
T ss_pred hCC-----eEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcC
Confidence 999 999999999865533333222444456899999999999999999999999863 24455556676542
Q ss_pred -------CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCCc---
Q 011842 339 -------DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQD--- 407 (476)
Q Consensus 339 -------~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~--- 407 (476)
+.++.++|+ +.++++|++++.+|.+|+++++++.+++++++.+.|++. ++.++.++..++++|+.++.
T Consensus 338 ~~~~~~~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~ 416 (475)
T 3k40_A 338 GSAPDYRHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNER 416 (475)
T ss_dssp -----------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHH
T ss_pred CCCCCcccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHH
Confidence 245667876 568999999999999999999999999999999999998 44444456678999987542
Q ss_pred -HHHhhce------eec----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 408 -EEFVRRW------QLA----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 408 -~~~~~~~------~l~----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.++.+++ .+. .....+|+++ ++++|++||++++++|+++.+++.+
T Consensus 417 ~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 417 NEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2222211 111 2346899985 5788999999999999999887753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=385.97 Aligned_cols=383 Identities=21% Similarity=0.284 Sum_probs=309.1
Q ss_pred cccccccccCCCccc-------cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCC
Q 011842 57 VHASCFSVTEPEADD-------EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINN 123 (476)
Q Consensus 57 ~~~~~~~~~~p~~~~-------~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~ 123 (476)
...+++.+.+|+++. .++|+.|.+.+++++++.+.+.++.+ ++||+++++. ++.+++++...+|.
T Consensus 45 ~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~p~f~~~~~~~~~~~~~~~e~l~~~~~~ 122 (511)
T 3vp6_A 45 RSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVR--TGHPRFFNQLSTGLDIIGLAGEWLTSTANT 122 (511)
T ss_dssp TTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCC--TTSTTEESSSSCCCCHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhccCC--CCCCCceEeecCCCcHHHHHHHHHHHHhcc
Confidence 334567777777753 36899999999999999998877654 5889988764 56788999999998
Q ss_pred CCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------------CCcEEEecC
Q 011842 124 LGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------------PDGILYASR 191 (476)
Q Consensus 124 ~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------------p~~~Vl~s~ 191 (476)
....|..++ ..+++|+++++|+++++|++.+..++++|+|||+||+.++.++++.. |+++|++++
T Consensus 123 ~~~~~~~~p---~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~ 199 (511)
T 3vp6_A 123 NMFTYEIAP---VFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE 199 (511)
T ss_dssp CSSCTTTCH---HHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEET
T ss_pred CCCCcccCc---hHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECC
Confidence 777776655 68899999999999999998545679999999999999999988742 678999999
Q ss_pred CCchHHHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCC
Q 011842 192 ESHYSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGF 265 (476)
Q Consensus 192 ~~H~S~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~ 265 (476)
.+|+|+.++++++|+ +++.||+++++.||+++|+++|.++ +.+|.+|++++++|++|.++|+++|+++|++||+
T Consensus 200 ~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~ 279 (511)
T 3vp6_A 200 QSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL 279 (511)
T ss_dssp TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC
Confidence 999999999999998 8999999989999999999999764 3347899999999999999999999999999999
Q ss_pred CCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh-hh-hhhcCCccccCCCC----
Q 011842 266 TQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HI-NVLSSNVEYLASRD---- 339 (476)
Q Consensus 266 ~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~-~~l~~~~~yl~~~~---- 339 (476)
|+|||+||+++.+........+.+.+.+|++++++|||+++|.+||+++++++ ++ ..+.....|+....
T Consensus 280 -----~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~ 354 (511)
T 3vp6_A 280 -----WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYD 354 (511)
T ss_dssp -----EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSC
T ss_pred -----EEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccc
Confidence 99999999988775444433345556699999999999999999999999986 33 33455667775432
Q ss_pred -------CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEee--cCCeeEEEEecCCcH-
Q 011842 340 -------ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAML--NELSSTVVFERPQDE- 408 (476)
Q Consensus 340 -------~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~--~~~~~iv~f~~~~~~- 408 (476)
.++.++|+. .++++|++++.+|.+++++++++..+++++|.+.|++. |+..+. ++..++++|+..+..
T Consensus 355 ~~~~~~~~~~~~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~ 433 (511)
T 3vp6_A 355 VSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 433 (511)
T ss_dssp GGGCCGGGSSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred cccCccCCCCCCCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc
Confidence 356777764 58999999999999999999999999999999999997 444444 356778888642210
Q ss_pred ------------------HHhhce------eec---cc--CCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHH
Q 011842 409 ------------------EFVRRW------QLA---CQ--GNIAHVVV-MPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 409 ------------------~~~~~~------~l~---~~--~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.+.+ .+. .. .+.+|+++ ++.+|.+||++++++|+++.+.+
T Consensus 434 ~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 434 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 121111 111 12 24699988 89999999999999999887654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=378.19 Aligned_cols=385 Identities=17% Similarity=0.208 Sum_probs=298.6
Q ss_pred ccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcc
Q 011842 60 SCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFI 129 (476)
Q Consensus 60 ~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~ 129 (476)
+++...+|+++.. .+|+.|.+.+++++++.+.+.++.. +|.||.++++. ++.+.+++...+|+....|.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 106 (486)
T 1js3_A 28 QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT-HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106 (486)
T ss_dssp CSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCC-CTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGG
T ss_pred CCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCC-CCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCccccc
Confidence 3455556666554 5689999999999999998878765 57788887764 56788999888887766665
Q ss_pred cCccchhhHHHHHHHHHHHHHHcCCCCC-------cccEEEcCCchhHHHHHHHHHHhhC--------C---------Cc
Q 011842 130 ESNYGVHSRQFEVGVLDWFARLWELENN-------EYWGYITNCGTEGNLHGILVGREVF--------P---------DG 185 (476)
Q Consensus 130 ~~~~~~~~~~le~~~~~~la~l~g~~~~-------~~~g~~t~ggt~An~~al~aa~~~~--------p---------~~ 185 (476)
.++ ...++|+++++|+++++|++.+ ...+++|+|||+||+.++.++++.. + +.
T Consensus 107 ~~~---~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 107 ASP---ACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp GCH---HHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred cCh---hHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 554 6789999999999999999842 2458999999999999999887531 1 23
Q ss_pred EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCC---CCcEEEEEeeCCCccccccCHHHHHHHHHH
Q 011842 186 ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAVDDLDLVIQTLEE 262 (476)
Q Consensus 186 ~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~id~l~~I~~ia~~ 262 (476)
+|++++++|+|+.++++.+|++++.||+++++.||+++|+++|++++ .+|++|++++|+|++|.++|+++|+++|++
T Consensus 184 ~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~ 263 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE 263 (486)
T ss_dssp EEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 58899999999999999999999999998889999999999998654 357799999999999999999999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCCC--
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR-- 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~~-- 338 (476)
||+ |+|||+||+++.+........+...+.+|++++++|||+++|++||+++++++. .+.+...+.|+...
T Consensus 264 ~~~-----~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~ 338 (486)
T 1js3_A 264 EDI-----WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQ 338 (486)
T ss_dssp TTC-----EEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC-----------
T ss_pred cCC-----EEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcc
Confidence 999 999999999876543222222333446999999999999999999999998763 45665556676432
Q ss_pred ---------CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecCCc-
Q 011842 339 ---------DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERPQD- 407 (476)
Q Consensus 339 ---------~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~~~- 407 (476)
+.++.++|+. .++++|++++.+|.+++++++++..++++++.+.|++.+...+ .++..++++|+.++.
T Consensus 339 ~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~ 417 (486)
T 1js3_A 339 GSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSD 417 (486)
T ss_dssp -CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCH
T ss_pred cccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChH
Confidence 1234566664 4789999999999999999999999999999999999744444 446678888887532
Q ss_pred ---HHHhh-----cee-ec----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 408 ---EEFVR-----RWQ-LA----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 408 ---~~~~~-----~~~-l~----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
.++.+ ++. +. .....+|+++ ++++|++||+++++.|+++.+++.++.
T Consensus 418 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 418 GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 22222 211 11 1236899995 788999999999999999988876543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=358.65 Aligned_cols=365 Identities=19% Similarity=0.282 Sum_probs=285.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLD 146 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~ 146 (476)
.+|+.|.+++++++++.+.+.++.. ++++|.++++. .+.+++++...+|.....|..++ ..+++|+++++
T Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~---~~~~le~~~~~ 147 (497)
T 2qma_A 72 DLDNKNAPLKSVIDDVAELVAKNAI-FTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQAS---SATYVEQKVVN 147 (497)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTTTSC-CTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCH---HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCC-CCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhCh---HHHHHHHHHHH
Confidence 4689999999999999998877765 67788887763 56778888888887666665554 57899999999
Q ss_pred HHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----------C------Cc-EEEecCCCchHHHHHHHHcCC--
Q 011842 147 WFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----------P------DG-ILYASRESHYSVFKAARMYRM-- 206 (476)
Q Consensus 147 ~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----------p------~~-~Vl~s~~~H~S~~~~~~~~G~-- 206 (476)
|+++++|++. ..++++|+|||+||+.+++++|++. + ++ +|+++..+|+|+.++++.+|+
T Consensus 148 ~la~~~g~~~-~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~ 226 (497)
T 2qma_A 148 WLCDKYDLSE-KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE 226 (497)
T ss_dssp HHHHHTTCCT-TCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHhCCCC-CCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc
Confidence 9999999974 2469999999999999999976421 2 34 899999999999999999987
Q ss_pred -eEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 207 -ECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 207 -~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
+++.||+++++.||+++|+++|+++ ..+|++|++++++|++|.++|+++|+++|++||+ |+|||+||+++.
T Consensus 227 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~-----~l~vD~a~~~~~ 301 (497)
T 2qma_A 227 KAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDM-----WMHVDGAYGGAL 301 (497)
T ss_dssp GGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-----EEEEEETTGGGG
T ss_pred ccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCC-----EEEEehhhhHHH
Confidence 7999999988999999999999864 2346788899999999999999999999999999 999999999877
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCC--------CCcccCCCCChhHHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASR--------DATIMGSRNGHAPIF 353 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~--------~~~~~~sr~~~~~l~ 353 (476)
.+.. ....+...+.+|++++++|||+++|++||+++++++. ++.+.....|+... +.++.++|+ +.+++
T Consensus 302 ~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~-~~al~ 379 (497)
T 2qma_A 302 ILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKR-FDALK 379 (497)
T ss_dssp GGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCC-CTHHH
T ss_pred HhCc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCc-hhHHH
Confidence 6543 2222333446899999999999999999999998763 55555555676432 123456775 45789
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecCCc--------HHHh-----hceeec--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERPQD--------EEFV-----RRWQLA-- 417 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~~~--------~~~~-----~~~~l~-- 417 (476)
+|++++.+|.+++++++++..+++++|.+.|++.+...+ .++..++++|+..+. ..+. +++.+.
T Consensus 380 ~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~ 459 (497)
T 2qma_A 380 VFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGE 459 (497)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEE
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999999999744444 456678888886432 1121 122221
Q ss_pred ---ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 ---CQGNIAHVVV-MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 ---~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~ 449 (476)
.....+|+++ ++.+|++||++++++|+++.++
T Consensus 460 ~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 460 TIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 1235799997 8999999999999999988765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=356.52 Aligned_cols=380 Identities=22% Similarity=0.278 Sum_probs=294.8
Q ss_pred ccccccCCCccc-------cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCC
Q 011842 60 SCFSVTEPEADD-------EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGD 126 (476)
Q Consensus 60 ~~~~~~~p~~~~-------~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~ 126 (476)
+++...+|+.+. .++|+.|.+.+++++++++.+..+.. ++||.++++. .+.+++++...+|..+.
T Consensus 45 ~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~ 122 (504)
T 2okj_A 45 KVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGVR--TGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMF 122 (504)
T ss_dssp CSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSCC--TTCTTEESSSSCCCCHHHHHHHHHHHHHCCBSS
T ss_pred CCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccCC--CCCCCEEEEccCCCCHHHHHHHHHHHhhccCCC
Confidence 455555665543 36789999999999999888766553 3578877653 45667888888887776
Q ss_pred CcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCC-----c-EEEecCCCc
Q 011842 127 PFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPD-----G-ILYASRESH 194 (476)
Q Consensus 127 ~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~-----~-~Vl~s~~~H 194 (476)
.|..++ ..+++|+++++|+++++|++.+..++++|+|||+||++++++++++ .+| + +|+++..+|
T Consensus 123 ~~~~~~---~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h 199 (504)
T 2okj_A 123 TYEIAP---VFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 199 (504)
T ss_dssp CTTTCH---HHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred chhhCh---HHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcch
Confidence 666554 5689999999999999999843456999999999999999998752 133 4 899999999
Q ss_pred hHHHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCC
Q 011842 195 YSVFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQD 268 (476)
Q Consensus 195 ~S~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~ 268 (476)
+|+.++++.+|+ +++.||+++++.||+++|+++|+++ +.+|.+|++++|+|++|.++|+++|+++|++||+
T Consensus 200 ~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~--- 276 (504)
T 2okj_A 200 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL--- 276 (504)
T ss_dssp THHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC---
Confidence 999999999987 8999999888999999999999763 3357799999999999999999999999999999
Q ss_pred ceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh-hhh-hhcCCccccCCCC-------
Q 011842 269 RFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HIN-VLSSNVEYLASRD------- 339 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~-~l~~~~~yl~~~~------- 339 (476)
|+|||+||+++.++.......+++.+.+|++++++|||+++|++||+++++++ +++ .+.....|+.+..
T Consensus 277 --~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 354 (504)
T 2okj_A 277 --WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSY 354 (504)
T ss_dssp --EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGG
T ss_pred --EEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcC
Confidence 99999999988765433333344445699999999999999999999999985 544 3445566774321
Q ss_pred ----CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee---cCCeeEEEEec-CCc----
Q 011842 340 ----ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML---NELSSTVVFER-PQD---- 407 (476)
Q Consensus 340 ----~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~---~~~~~iv~f~~-~~~---- 407 (476)
.++.++|+. .++++|++++.+|.+++++++++..+++++|.+.|++.+...+. ++..++++|+. +..
T Consensus 355 ~~~~~~~~~~rr~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~ 433 (504)
T 2okj_A 355 DTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGV 433 (504)
T ss_dssp CCGGGSSCSSCBC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CcccCCCCCCCCc-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcccccc
Confidence 234666664 47899999999999999999999999999999999997434443 35566777764 321
Q ss_pred --------------HHHhh-----c-eeec---ccC--CEEEEEEc-CCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 --------------EEFVR-----R-WQLA---CQG--NIAHVVVM-PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 --------------~~~~~-----~-~~l~---~~~--~~lRv~~~-~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+ + +.+. ..+ +.+|+++. +.+|++||++++++|+++.+++
T Consensus 434 ~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 434 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp CCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11211 2 1121 122 58999985 9999999999999999887543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=351.81 Aligned_cols=372 Identities=20% Similarity=0.203 Sum_probs=292.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCc-chHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDF-DYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFAR 150 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~-~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~ 150 (476)
.++|+.|.+.+++++++.+.+.......+.+|.+.+. ..+.+.+++...++.....+..++ +..++|+++++|+++
T Consensus 16 ~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~~~~~~~---~~~~l~~~~~~~la~ 92 (452)
T 2dgk_A 16 KRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYP---QSAAIDLRCVNMVAD 92 (452)
T ss_dssp CSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTCH---HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCCChhhCh---hHHHHHHHHHHHHHH
Confidence 3688999999999999999884332235667777653 345778888877775444444443 678999999999999
Q ss_pred HcCCCCCc---ccEEEcCCchhHHHHHHHHHHhhC------CC-----cEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 151 LWELENNE---YWGYITNCGTEGNLHGILVGREVF------PD-----GILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 151 l~g~~~~~---~~g~~t~ggt~An~~al~aa~~~~------p~-----~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
++|++.+. ..+++|+|||+||+++++++++.. +| ++|++++ +|+++.++++++|++++.||+++
T Consensus 93 l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~ 171 (452)
T 2dgk_A 93 LWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPG 171 (452)
T ss_dssp HTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTT
T ss_pred HhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCC
Confidence 99998542 258999999999999999887521 33 5899999 99999999999999999999986
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh------CCCCCceEEEEecCcccccccccccC
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES------GFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~------g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++.+|+++|+++|++++ .+|++++|+|++|.++|+++|+++|++| |+ |+|||+||+++..++....
T Consensus 172 ~~~~d~~~l~~~i~~~t---~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-----~l~vD~a~~~~~~~~~~~~ 243 (452)
T 2dgk_A 172 QLFMDPKRMIEACDENT---IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI-----DMHIDAASGGFLAPFVAPD 243 (452)
T ss_dssp BCSCCHHHHHHHCCTTE---EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC-----CEEEECTTGGGTHHHHCTT
T ss_pred CCeECHHHHHHHHhhCC---EEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCC-----cEEEEcccHHHHHHhhCcc
Confidence 79999999999997654 5899999999999999999999999996 99 9999999998765432221
Q ss_pred CCCCC-cccccEEEEcCCCCCCCCCCceeEEeehh-hh-hhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChh
Q 011842 290 PKVSF-KKPIGSVSVSGHKFVGCPMPCGVQITRME-HI-NVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 290 ~~~~~-~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~-~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
..+++ ..++|++++++|||+++|+++|+++++++ ++ +.+...+.|+... ..++.++|++...+++|++++.++.+
T Consensus 244 ~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~ 323 (452)
T 2dgk_A 244 IVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGRE 323 (452)
T ss_dssp CCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHH
Confidence 12333 23599999999999999999999999875 33 5555556676542 23467888887789999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEee-c----CCeeEEEEecCCc-------HHHh-----hceeec-----c---c
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAML-N----ELSSTVVFERPQD-------EEFV-----RRWQLA-----C---Q 419 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~----~~~~iv~f~~~~~-------~~~~-----~~~~l~-----~---~ 419 (476)
++++++++..+++++|.+.|++.+...+. + +..++++|+.++. .++. +++.+. . .
T Consensus 324 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~ 403 (452)
T 2dgk_A 324 GYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATD 403 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCC
Confidence 99999999999999999999998644443 3 3468888886531 3332 233221 1 2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGK 455 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~ 455 (476)
...+|++++..+|++|+|+|+++|+++.+.+.+.+.
T Consensus 404 ~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~ 439 (452)
T 2dgk_A 404 IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPK 439 (452)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 358999999999999999999999999888876543
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=356.77 Aligned_cols=377 Identities=20% Similarity=0.249 Sum_probs=290.2
Q ss_pred cccccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCc
Q 011842 59 ASCFSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPF 128 (476)
Q Consensus 59 ~~~~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~ 128 (476)
.+++...+|+.+.. ++|+.|.+.+++++++++.+..+.+ +++|.++++. .+.+++++....|.....|
T Consensus 63 ~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~ 140 (515)
T 2jis_A 63 QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSVK--TGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTY 140 (515)
T ss_dssp SCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSCC--TTSTTEESSSCCCCCHHHHHHHHHHHHHCCCTTCT
T ss_pred CCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCCC--CCCCCeEEEeeCCCCHHHHHHHHHHHHhccCCCch
Confidence 35666677776653 7899999999999999887776653 3477776553 4566788887777766666
Q ss_pred ccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCc------EEEecCCCchH
Q 011842 129 IESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDG------ILYASRESHYS 196 (476)
Q Consensus 129 ~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~------~Vl~s~~~H~S 196 (476)
..++ ...++|.++++|+++++|++. ..+++|+|||+||+.++.+++++. +|+ +|++++.+|+|
T Consensus 141 ~~s~---~~~~le~~~~~~la~l~g~~~--~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s 215 (515)
T 2jis_A 141 EIAP---VFVLMEEEVLRKLRALVGWSS--GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYS 215 (515)
T ss_dssp TTCH---HHHHHHHHHHHHHHHHHTCSS--CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhch---HHHHHHHHHHHHHHHHhCCCC--CCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHH
Confidence 6554 678999999999999999973 459999999999999999987421 343 89999999999
Q ss_pred HHHHHHHcCC---eEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCce
Q 011842 197 VFKAARMYRM---ECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRF 270 (476)
Q Consensus 197 ~~~~~~~~G~---~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~ 270 (476)
+.++++.+|+ +++.||+++++.+|+++|+++|.++ +.+|.+|++++++|++|.++|+++|+++|++||+
T Consensus 216 ~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~----- 290 (515)
T 2jis_A 216 IQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL----- 290 (515)
T ss_dssp HHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC-----
Confidence 9999999998 8999999888999999999999763 3357799999999999999999999999999999
Q ss_pred EEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehh--hhhh-hcCCccccCCCC--------
Q 011842 271 YIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRME--HINV-LSSNVEYLASRD-------- 339 (476)
Q Consensus 271 ~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~--~~~~-l~~~~~yl~~~~-------- 339 (476)
|+|||+||+++.++.......+...+.+|++++++|||+++|.+||+++++++ +++. +...+.|+.+..
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 370 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALD 370 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGC
T ss_pred eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCC
Confidence 99999999988776443332344445699999999999999999999999987 5543 444556664321
Q ss_pred ---CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEec-CC-------c
Q 011842 340 ---ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFER-PQ-------D 407 (476)
Q Consensus 340 ---~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~-~~-------~ 407 (476)
.++.++|+. .++++|++++.+|.+|+++++++..+++++|.+.|++. ++..+.++..++++|+. |. .
T Consensus 371 ~~~~~~~~~rr~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~ 449 (515)
T 2jis_A 371 TGDKVVQCGRRV-DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQES 449 (515)
T ss_dssp CGGGCSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTS
T ss_pred CCCCCCCCCCcc-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccc
Confidence 234566653 47899999999999999999999999999999999997 44434445556677754 21 1
Q ss_pred HH-----------Hh-----hce-eec-----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHH
Q 011842 408 EE-----------FV-----RRW-QLA-----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 408 ~~-----------~~-----~~~-~l~-----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~ 448 (476)
.+ +. ++. .+. ...+.+|+++ ++.+|++|||+++++|+++.+
T Consensus 450 ~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 450 PDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 11 111 111 1135899999 899999999999999988754
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=338.37 Aligned_cols=370 Identities=19% Similarity=0.188 Sum_probs=289.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCc------CCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYN------LDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLD 146 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~------~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~ 146 (476)
.+|+.+..++++++.+.+.+... |+|.. ..+....+.+++...++.....+..++ ...++|+++++
T Consensus 31 ~~p~~~~~~~~~~~~~~~~i~l~-----gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p---~~~~le~~~~~ 102 (502)
T 3hbx_A 31 KMPENSIPKEAAYQIINDELMLD-----GNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYP---VTTELQNRCVN 102 (502)
T ss_dssp SCCSSCCCHHHHHHHHHHHGGGS-----CCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCH---HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhccC-----CCCCceeccccCCCCCHHHHHHHHHHhccCCCChhcCh---hHHHHHHHHHH
Confidence 67899999999999999887543 23331 122346677777777776554454443 57899999999
Q ss_pred HHHHHcCCC--CC-cccEEEcCCchhHHHHHHHHHHhhC------CCc-----EEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 147 WFARLWELE--NN-EYWGYITNCGTEGNLHGILVGREVF------PDG-----ILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 147 ~la~l~g~~--~~-~~~g~~t~ggt~An~~al~aa~~~~------p~~-----~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
|+++++|++ ++ ...|++|+|||+||++++++++... +|+ .|++++.+|+++.++++++|++++.||
T Consensus 103 ~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~ 182 (502)
T 3hbx_A 103 MIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVK 182 (502)
T ss_dssp HHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEe
Confidence 999999998 22 2357789999999999998876531 244 899999999999999999999999999
Q ss_pred CCCC-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh------CCCCCceEEEEecCcccccccc
Q 011842 213 CLIS-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES------GFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 213 ~~~~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~------g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
++++ +.+|+++|+++|.+++ .+|++++++|++|.++|+++|+++|+++ |+ |+|||+||++++.++
T Consensus 183 ~~~~~~~~d~~~l~~~i~~~t---~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~-----~l~VD~A~~~~~~p~ 254 (502)
T 3hbx_A 183 LSEGYYVMDPQQAVDMVDENT---ICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDT-----PIHVDAASGGFIAPF 254 (502)
T ss_dssp CBTTBCSCCHHHHHHHCCTTE---EEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCC-----CEEEECTTGGGTHHH
T ss_pred cCCCcCcCCHHHHHHHHhhCC---EEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCC-----eEEEECCccchhhhh
Confidence 9865 8999999999997654 5888999999999999999999999999 99 999999999876543
Q ss_pred cccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehh-hh-hhhcCCccccCCCC--CcccCCCCChhHHHHHHHHHH
Q 011842 286 VKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRME-HI-NVLSSNVEYLASRD--ATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 286 ~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~-~~l~~~~~yl~~~~--~~~~~sr~~~~~l~~~~~l~~ 360 (476)
......+++. .++|++++++|||+++|.++|+++++++ .+ +.+.....|+.... .++.++|++..++++|++++.
T Consensus 255 ~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~ 334 (502)
T 3hbx_A 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIR 334 (502)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHH
T ss_pred hCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHH
Confidence 3222223333 3599999999999999999999999865 33 44455567776543 345688888788999999999
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec--CCeeEEEEecCCc-----HHHh-----hceeec-----c---cC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN--ELSSTVVFERPQD-----EEFV-----RRWQLA-----C---QG 420 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~iv~f~~~~~-----~~~~-----~~~~l~-----~---~~ 420 (476)
++.+++++++++..+++++|.+.|++.|...+.+ +..++++|+.+++ ..+. +++.+. . ..
T Consensus 335 lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~ 414 (502)
T 3hbx_A 335 LGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHI 414 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCc
Confidence 9999999999999999999999999998444443 4678999987542 1222 234332 1 23
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGKRQP 458 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~~~~ 458 (476)
..+|++++..+|.+|+|+|+++|+++.+.+.+.....+
T Consensus 415 ~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~~~~~ 452 (502)
T 3hbx_A 415 TVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVI 452 (502)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 58999999999999999999999999998877655444
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=291.57 Aligned_cols=361 Identities=23% Similarity=0.319 Sum_probs=275.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccc----cccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTK----HHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWF 148 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~----~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~l 148 (476)
++|+.+.+.+++++.+.+....... .++|+..... ++.....+.....+..+... .+ .+..++++++++++
T Consensus 4 ~lp~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~-~~---~~~~~~~~~l~~~l 78 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSNV-LPITRKIVDIFLETNLGDPG-LF---KGTKLLEEKAVALL 78 (397)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCCC-CTHHHHHHHHHTTCCTTSGG-GB---HHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCCC-cHHHHHHHHHHHhhcCCCcc-cC---hhHHHHHHHHHHHH
Confidence 5788999999999999987644322 2333332211 12333333333333333222 22 25679999999999
Q ss_pred HHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----------CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 149 ARLWELENNEYWGYITNCGTEGNLHGILVGREV-----------FPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 149 a~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
++++|.+++ ++++|+|||+|+..++.+++.. .+++.|+++.++|.++..+++.+|++++.+|.++++
T Consensus 79 a~~~~~~~~--~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 156 (397)
T 3f9t_A 79 GSLLNNKDA--YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDY 156 (397)
T ss_dssp HHHTTCTTC--EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHhCCCCC--CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCC
Confidence 999999753 5899999999999999998763 248999999999999999999999999999999889
Q ss_pred ccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc-------C
Q 011842 218 EIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK-------A 289 (476)
Q Consensus 218 ~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~-------~ 289 (476)
.+|+++|++++++ +++ +|++++++|++|.+.|+++|.++|++||+ |+|+|++|+++.++.... .
T Consensus 157 ~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~~~~~~~~~~~~~~~~~ 228 (397)
T 3f9t_A 157 TIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNI-----YIHVDAAFGGLVIPFLDDKYKKKGVN 228 (397)
T ss_dssp SBCHHHHHHHHHHSCCC---EEEEEBSCTTTCCBCCHHHHHHHHHHHTC-----EEEEECTTGGGTGGGCCGGGCCTTCC
T ss_pred cCCHHHHHHHHhhcCCe---EEEEECCCCCCCCCCCHHHHHHHHHHhCC-----eEEEEccccchhhhhccccccccccc
Confidence 9999999999988 554 78888999999999999999999999999 999999998776643321 0
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCC-CCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASR-DATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~-~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
..+++...+|+++.++||++++|.++|+++++++. .+.+.....|+... ...+.+++++...+.+|++++.++..+++
T Consensus 229 ~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 308 (397)
T 3f9t_A 229 YKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQR 308 (397)
T ss_dssp CCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHH
Confidence 01222125899999999999989999999998774 44444334454432 23345777777788899999988888899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHhh-----ceeeccc--CCEEEEEEcCCCCHHHHHHHH
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFVR-----RWQLACQ--GNIAHVVVMPNVTIDKLDDFL 440 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~~~--~~~lRv~~~~~~T~edid~~~ 440 (476)
+++++..++++++.+.|++.++..+.++..+++.|..++..++.+ ++.+... .+.+|++++..+|+++|++++
T Consensus 309 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~ 388 (397)
T 3f9t_A 309 KIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDEDYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFI 388 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTTHHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCCHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHH
Confidence 999999999999999999997765666677888888776433322 3333322 379999999999999999999
Q ss_pred HHHHHHHH
Q 011842 441 NELIENRS 448 (476)
Q Consensus 441 ~~l~~~~~ 448 (476)
++|+++.+
T Consensus 389 ~~l~~~l~ 396 (397)
T 3f9t_A 389 EILNSIKR 396 (397)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhC
Confidence 99988653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=309.12 Aligned_cols=370 Identities=18% Similarity=0.175 Sum_probs=280.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHhc-ccccccCCCCcCCcc---hHHHHHHH----HHhhCCCCCCcccCccchhhHHHHHH
Q 011842 72 EFTGDKEAYMAGVLARYRKTLME-RTKHHLGYPYNLDFD---YGALAQLQ----HFSINNLGDPFIESNYGVHSRQFEVG 143 (476)
Q Consensus 72 ~~~~~~~~~~~~il~~~~~~~~~-~~~~~~g~p~~~~~~---~~~l~~~l----~~~~n~~g~~~~~~~~~~~~~~le~~ 143 (476)
.++|+.|.+.+++++.+++.... ... .|.+|.+.+.. ...+.+++ ....+.....+..+ ++..++|++
T Consensus 36 ~~lp~~g~~~~~i~~~l~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 111 (497)
T 3mc6_A 36 PQLPSNGIPQDDVIEELNKLNDLIPHT-QWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVF---PAVRKMESE 111 (497)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHSSCCC-CGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTC---HHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhhhcCCC-CCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccC---hHHHHHHHH
Confidence 47899999999999999988763 222 33456655542 13333333 33222222222222 367899999
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh---CCC---cEEEecCCCchHHHHHHHHcCCeEEEEeCCC-C
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV---FPD---GILYASRESHYSVFKAARMYRMECVKVDCLI-S 216 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~---~p~---~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~ 216 (476)
+.+|+++++|++.+..++++|+|||+|++.+++++++. .++ +.|+++.++|.++.++++.+|++++.||+++ +
T Consensus 112 ~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~ 191 (497)
T 3mc6_A 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTT 191 (497)
T ss_dssp HHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTT
T ss_pred HHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCccc
Confidence 99999999999833456999999999999999998762 133 7999999999999999999999999999987 7
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc-----CCC
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK-----APK 291 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~-----~~~ 291 (476)
+.+|+++|+++|.++ +.+|++++++|++|.++|+++|+++|++||+ |+|+|+||+++..++... .+.
T Consensus 192 ~~~d~~~l~~~i~~~---~~~v~~~~p~nptG~~~~l~~i~~la~~~g~-----~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 192 YQVDLGKVKKFINKN---TVLLVGSAPNFPHGIADDIEGLGKIAQKYKL-----PLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp CSBCTTTTGGGCCSS---EEEEEEETTCTTTCCCCSCTTTTTHHHHTTC-----CEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred CcCCHHHHHHHHhhC---CEEEEEECCCCCCCcCCCHHHHHHHHHHhCC-----EEEEECcchhhhhhhhhhhcccCCcc
Confidence 899999999998764 4589999999999999999999999999999 999999999776553221 112
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhh--cCCccccCC--CCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVL--SSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l--~~~~~yl~~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
++... ++|+++.++|||+++|.++|+++++++.+... .....|... ...++.++|.+...+++|++++.++..++
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~ 343 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGY 343 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHH
Confidence 44433 48999999999999999999999998764432 222334332 23456677776667789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCeEeecCCeeEEEEecCC--cHHHh-----hceeeccc--CCEEEEEEcCCCCHHH
Q 011842 367 QKEVQKCLRNAHYLKDRLLDA--GISAMLNELSSTVVFERPQ--DEEFV-----RRWQLACQ--GNIAHVVVMPNVTIDK 435 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~--g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~~--~~~lRv~~~~~~T~ed 435 (476)
++++++..++++++.+.|++. |+..+.++..++++|..+. ..++. +++.+... ...+|++++ .+|+++
T Consensus 344 ~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~ 422 (497)
T 3mc6_A 344 IESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHV 422 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHH
Confidence 999999999999999999994 5655545667788887653 22222 34444322 346899888 789999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 011842 436 LDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 436 id~~~~~l~~~~~~~~~~~ 454 (476)
+|+++++|+++.+++.+..
T Consensus 423 i~~~~~~L~~~l~~~~~~~ 441 (497)
T 3mc6_A 423 VDEICDILRTTVQELKSES 441 (497)
T ss_dssp HHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 9999999999998876553
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=302.41 Aligned_cols=371 Identities=18% Similarity=0.182 Sum_probs=279.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc-------hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD-------YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVL 145 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~-------~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~ 145 (476)
.+|+.|.+.+++++++++.+..+.. .|.+|.+.++. ...+.+.+....+.....+..++ ...++|++++
T Consensus 70 ~lp~~g~~~~~i~~~l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~le~~l~ 145 (514)
T 3mad_A 70 RLPRAGLPRAEILAEIAAMGAAESP-AWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWP---STAKFEAEVV 145 (514)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHHHHH-HHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCH---HHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCC-CCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccCh---HHHHHHHHHH
Confidence 6789999999999999988655433 23344444421 34555666555554333333332 5679999999
Q ss_pred HHHHHHcCCCC--CcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 146 DWFARLWELEN--NEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 146 ~~la~l~g~~~--~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
+|+++++|++. +...+++|+|||+||..++++++... +++.|+++.++|.++.++++.+|++++.||+++++
T Consensus 146 ~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~~ 225 (514)
T 3mad_A 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADY 225 (514)
T ss_dssp HHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCCC
Confidence 99999999984 23345999999999999999988632 12899999999999999999999999999999899
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc----CCCCC
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK----APKVS 293 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~----~~~~~ 293 (476)
.+|+++|+++|.+++ .+|++++++|++|.++|+++|.++|++||+ |+|+|++|+++..++... .+.++
T Consensus 226 ~~d~~~Le~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~la~~~~i-----~livDea~~~~~~~~~~~~g~~~~~~~ 297 (514)
T 3mad_A 226 RADVAAMREAITPNT---VVVAGSAPGYPHGVVDPIPEIAALAAEHGI-----GCHVDACLGGFILPWAERLGYPVPPFD 297 (514)
T ss_dssp CBCHHHHHHHCCTTE---EEEEEETTCTTTCCCCCHHHHHHHHHHHTC-----EEEEECTTTTTTHHHHHHTTCCCCCCS
T ss_pred CCCHHHHHHHhccCC---EEEEEeCCCCCCccccCHHHHHHHHHHhCC-----eEEEecccccccchhHHhcCCCCCccc
Confidence 999999999997644 588899999999999999999999999999 999999999876642111 11244
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhc--CCccccCC--CCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS--SNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~--~~~~yl~~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
... ++|++++++|||+++|.++|+++++++...... ....|..+ ...++.+++.+...+++|++++.++..++++
T Consensus 298 ~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~ 377 (514)
T 3mad_A 298 FRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLD 377 (514)
T ss_dssp TTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHH
Confidence 333 489999999999999999999999987543321 11122211 1234567887777789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeecc--cCCEEEEEEc-CCCCHHHHHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLAC--QGNIAHVVVM-PNVTIDKLDD 438 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~--~~~~lRv~~~-~~~T~edid~ 438 (476)
++++..++++++.+.|++.+...+..+..+++.|..+. ..++. +++.++. ..+.+|++++ .++++++|++
T Consensus 378 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~ 457 (514)
T 3mad_A 378 ATRRILQAADRLKAGVRAIPSLKILGDPLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDR 457 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCEESSCCSSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEeCCCeEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHH
Confidence 99999999999999999974334444445577776542 22222 3444422 1467999886 6667899999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 011842 439 FLNELIENRSTWYEDGK 455 (476)
Q Consensus 439 ~~~~l~~~~~~~~~~~~ 455 (476)
++++|+++.+++.++..
T Consensus 458 ~l~~L~~~l~~~~~~~~ 474 (514)
T 3mad_A 458 FLADLQDAVAQVRAHPE 474 (514)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999988876554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=288.44 Aligned_cols=351 Identities=14% Similarity=0.077 Sum_probs=247.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHH----hhCCCC--CCcccCc----cchhhHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHF----SINNLG--DPFIESN----YGVHSRQFEV 142 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~----~~n~~g--~~~~~~~----~~~~~~~le~ 142 (476)
++|+.|.+.+++.....+........|+.+-.....+...+..+... ..+..+ ..+...+ ......++++
T Consensus 57 ~lp~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (456)
T 2z67_A 57 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTN 136 (456)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHH
Confidence 68889999888887777665443333332111111111111122211 111111 1111111 1113678999
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCch-hHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC---CCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGT-EGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC---LISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt-~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~---~~~g~ 218 (476)
++++++++++|++.+ +++|+||| .+|+.++.+++...++++|+++..+|+|+.++++..|++++.++. ++++.
T Consensus 137 ~~~~~la~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 213 (456)
T 2z67_A 137 KILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 213 (456)
T ss_dssp HHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHHHHHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCC
Confidence 999999999999752 99999999 577778777665336778888889999999999999999999887 66789
Q ss_pred cCHHHHHHHH-Hc--CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc-CCCCCC
Q 011842 219 IDCADFKAKL-LQ--NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK-APKVSF 294 (476)
Q Consensus 219 ~D~~~Le~~l-~~--~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~-~~~~~~ 294 (476)
+|+++|+++| ++ ++ ++.+|+++.++|++|.++|+++|+++|++||+ |+|||+||++...+.... ...+..
T Consensus 214 ~d~~~l~~~i~~~~~~~-~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~-----~v~vD~A~~~~~~g~~~~~~~~~~~ 287 (456)
T 2z67_A 214 VPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDDIVEIAKICENYDI-----PHIINGAYAIQNNYYLEKLKKAFKY 287 (456)
T ss_dssp CCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-----CEEEECTTTTTCHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHhhCC-CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-----cEEEECcchHHHHHhhHHHHHhhCC
Confidence 9999999999 43 23 45677788899999999999999999999999 999999998654421110 000111
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
.+|++++|+|||+++|+++|++++++ ++++.+. +.|. +.+.+...+.+|+++..++.++++++.++.
T Consensus 288 --~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~--~~~~--------g~~~~~~~~~~~aal~~l~~~~~~~~~~~~ 355 (456)
T 2z67_A 288 --RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEIS--LSYP--------GRASATPVVNTLVSLLSMGSKNYLELVKNQ 355 (456)
T ss_dssp --CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH--TTSC--------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcC--cCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999964 4555552 3343 233445578899999999989999999999
Q ss_pred HHHHHHHHHHHHhc----CCeEeecCCeeEEEEec--CCc-HHHhh-----c---eeec------------c-cCCEEEE
Q 011842 374 LRNAHYLKDRLLDA----GISAMLNELSSTVVFER--PQD-EEFVR-----R---WQLA------------C-QGNIAHV 425 (476)
Q Consensus 374 ~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~--~~~-~~~~~-----~---~~l~------------~-~~~~lRv 425 (476)
.+++++|.+.|++. |.. +.++. ++++|.. +.. .++.+ + ..+. . ..+++|+
T Consensus 356 ~~~~~~l~~~L~~~~~~~g~~-v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~ 433 (456)
T 2z67_A 356 KNSKKLLDELLNDLSKKTGGK-FLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVM 433 (456)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC-BCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEE
T ss_pred HHHHHHHHHHHHhcccccCCE-ecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhh
Confidence 99999999999987 643 44444 7777776 432 22221 1 1232 1 1357899
Q ss_pred EEcCCCCHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~ 446 (476)
+++.++|++|||+++++|+++
T Consensus 434 s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 434 NAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp ECCTTCCHHHHHHHHHHHHTC
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=266.15 Aligned_cols=354 Identities=12% Similarity=0.016 Sum_probs=243.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHhccccccc-------------C---CCCcCCcch--HHHHHHHHHhhCCCCCCcccCccc
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHL-------------G---YPYNLDFDY--GALAQLQHFSINNLGDPFIESNYG 134 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~-------------g---~p~~~~~~~--~~l~~~l~~~~n~~g~~~~~~~~~ 134 (476)
.+|++|.+-++|...+.+.-....++.. | -|++++|.. +..++++.. |. .+..++
T Consensus 22 ~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~~~~d~l~~---~~--~~~~~~-- 94 (450)
T 3bc8_A 22 KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAV---QP--KAAGSS-- 94 (450)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC----------CC--SBHHHH--
T ss_pred cCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchhHHHHHHHh---Cc--cccCCc--
Confidence 6899999999999888876544333211 1 133344432 233455544 11 222222
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCch-hHHHHHHHHHHhhC-CCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGT-EGNLHGILVGREVF-PDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt-~An~~al~aa~~~~-p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
....+|+.+..|+.+++|++.. +.+++++|+| +++.+++.++|... +++.|++++..|.|+.+++.++|++++.|+
T Consensus 95 -~~~~~e~~~~~~~~~~lGlp~~-~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~ 172 (450)
T 3bc8_A 95 -LLNKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIE 172 (450)
T ss_dssp -HHHHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHHHHHHHHHHHHhCCCCCC-ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEE
Confidence 4668999999999999999853 4579999998 66777777777643 367889899999999999999999988886
Q ss_pred C---CCCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 213 C---LISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 213 ~---~~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
. ++.+.||++.|+++|++++ +.+.+|+.+.+++.+|.++||++|+++|++||+ |+|||+|||+.... ..+
T Consensus 173 ~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi-----~l~VD~A~G~~~~~-~~~ 246 (450)
T 3bc8_A 173 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDI-----PHVVNNAYGLQSSK-CMH 246 (450)
T ss_dssp CEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-----CEEEECTTTTTCHH-HHH
T ss_pred eeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCC-----eEEEECCCchhhhh-hHh
Confidence 6 5568999999999998764 345666666556667799999999999999999 99999999975432 111
Q ss_pred CCCCCCc--ccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 289 APKVSFK--KPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~--~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
.+. ... +++|+++.|+|||+++|.++++++++++ .++.+. ..|. +.....+++.+|..+..+|.++
T Consensus 247 l~~-~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~--~~~~--------g~~s~SpsL~l~~~l~~~G~~g 315 (450)
T 3bc8_A 247 LIQ-QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS--KMYP--------GRASASPSLDVLITLLSLGCSG 315 (450)
T ss_dssp HHH-HHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH--HHSC--------SCBCSHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH--HHhh--------cCCcccHHHHHHHHHHHHHHHH
Confidence 100 111 3599999999999999999999999765 344332 2342 2222345799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CeEeecCC---eeEEEEec-----CCcH-HH-----h---hceeec-------
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAG----ISAMLNEL---SSTVVFER-----PQDE-EF-----V---RRWQLA------- 417 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~---~~iv~f~~-----~~~~-~~-----~---~~~~l~------- 417 (476)
+++.+++..+++++|+++|++.+ ..++..+. +..+.+.. ..+. .+ . .++.+.
T Consensus 316 ~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~ 395 (450)
T 3bc8_A 316 YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT 395 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccc
Confidence 99999999999999999998754 43332221 21121111 1111 11 0 111111
Q ss_pred ---------------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 418 ---------------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 418 ---------------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.....+-+.+++..|++|+++|+++|+++.+++.+
T Consensus 396 ~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 396 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp ETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11356677788999999999999999998766543
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-28 Score=245.84 Aligned_cols=300 Identities=13% Similarity=0.135 Sum_probs=227.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++++++++++++++|.+ +...+++|+|||+|+..++.++.. |++.|++++++|++ +...++..|++++.+++
T Consensus 50 ~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 50 EYRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVS--KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhc--CCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 34689999999999999997 334589999999999999988754 89999999999998 88899999999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+.++.+|+++|++++.+.. ++.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ ++
T Consensus 127 ~~~~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~~~~~-------~~ 193 (386)
T 2dr1_A 127 EPGKAVKPEDLDDALRKNP-DVEAVTITYNETSTGVLNPLPELAKVAKEHDK-----LVFVDAVSAMGGAD-------IK 193 (386)
T ss_dssp CTTCCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHTTC-----EEEEECTTTBTTBC-------CC
T ss_pred CCCCCCCHHHHHHHHhcCC-CCcEEEEEeecCCcchhCCHHHHHHHHHHcCC-----eEEEEccccccCcc-------cc
Confidence 8888899999999996421 23478888999999999999999999999999 99999999865543 12
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC---ccccC------CC--CCcccCCCCChhHHHHHHHHHHh
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN---VEYLA------SR--DATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~---~~yl~------~~--~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
... .+|+++.|+||++++|.++|++++++++++.+... ..|+. .. .....++.+......++.+++.+
T Consensus 194 ~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 273 (386)
T 2dr1_A 194 FDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII 273 (386)
T ss_dssp TTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 222 37999999999999888899999998876655211 01110 00 00112333333344455566665
Q ss_pred Chh-cHHHHHHHHHHHHHHHHHHHHhcCCeEeecC---CeeEEEEecCC---cHHHh-----hceeecc-----cCCEEE
Q 011842 362 GYK-GFQKEVQKCLRNAHYLKDRLLDAGISAMLNE---LSSTVVFERPQ---DEEFV-----RRWQLAC-----QGNIAH 424 (476)
Q Consensus 362 g~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~iv~f~~~~---~~~~~-----~~~~l~~-----~~~~lR 424 (476)
... +++++.++..++++++.+.|++.|+....++ ..+++.|..+. ..++. +++.+.. ..+.+|
T Consensus 274 ~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iR 353 (386)
T 2dr1_A 274 EKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFR 353 (386)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEE
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEE
Confidence 444 6889999999999999999999876544332 25677777652 22332 2333322 347899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++++..+|++|+++++++|+++.+++.
T Consensus 354 i~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 354 IGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999887753
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-29 Score=250.00 Aligned_cols=299 Identities=11% Similarity=0.044 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++..++++++++++|.+.+..++++|+|||+|+. ++.++.. |++.|++++++|++ +...++..|++++.+|.
T Consensus 32 ~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 108 (384)
T 3zrp_A 32 EFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRP 108 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--CCCEEEEecCCcchHHHHHHHHHcCCcEEEecC
Confidence 3467888999999999999863356999999999999 8776644 89999999999977 66777888999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+.++.+|+++|++++.+.. +.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ .+
T Consensus 109 ~~~~~~d~~~l~~~i~~~~--~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~~~~~-------~~ 174 (384)
T 3zrp_A 109 SPGDYVKPGEVEEEVRKSE--YKLVALTHVETSTGVREPVKDVINKIRKYVE-----LIVVDGVSSVGAEE-------VK 174 (384)
T ss_dssp STTCCCCHHHHHHHHHHSC--EEEEEEESEETTTTEECCHHHHHHHHGGGEE-----EEEEECTTTTTTSC-------CC
T ss_pred CCCCCCCHHHHHHHHHhCC--CcEEEEeCCCCCCceECcHHHHHHHHHhcCC-----EEEEECcccccCcc-------cc
Confidence 9889999999999998732 3488888999999999999999999999999 99999999865443 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhh-cC---CccccCCC------------CCcccCCCCChhHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVL-SS---NVEYLASR------------DATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l-~~---~~~yl~~~------------~~~~~~sr~~~~~l~~~~ 356 (476)
... .+|+++.++||++++|.++|++++++++++.+ .. ...|+... .....++.+......+++
T Consensus 175 ~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~ 254 (384)
T 3zrp_A 175 AEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAE 254 (384)
T ss_dssp TTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHH
T ss_pred ccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHH
Confidence 222 38999999999998889999999999876655 11 11111000 011113444344455666
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC----CeeEEEEecCC--cHHHhh-----ceeecccC----C
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE----LSSTVVFERPQ--DEEFVR-----RWQLACQG----N 421 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~iv~f~~~~--~~~~~~-----~~~l~~~~----~ 421 (476)
++..+...+++++.++..++++++.+.|++.|+....++ ..+++.|..+. ..++.+ ++.+.... +
T Consensus 255 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 334 (384)
T 3zrp_A 255 AFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFK 334 (384)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcC
Confidence 777766677899999999999999999999876544443 24566677663 233322 23333333 6
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+|+++...+|++||++++++|+++.+++.
T Consensus 335 ~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 335 YFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999988764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=245.02 Aligned_cols=298 Identities=13% Similarity=0.102 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHHHHc---CCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAARMY---RMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~~~~---G~~v~~ 210 (476)
...+...++++++++++|.+++ .+++|+|||+|+..++.++++ ..|++.|+++.++|.++..++..+ |++++.
T Consensus 65 ~~~~~~~~l~~~la~~~~~~~~--~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (423)
T 3lvm_A 65 QAEEAVDIARNQIADLVGADPR--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 142 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--eEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEE
Confidence 4457788899999999999743 599999999999999988764 236899999999999998877555 999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+|.++++.+|+++|+++|.+++ .+|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+
T Consensus 143 v~~~~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~~~~~------ 208 (423)
T 3lvm_A 143 LAPQRNGIIDLKELEAAMRDDT---ILVSIMHVNNEIGVVQDIAAIGEMCRARGI-----IYHVDATQSVGKLP------ 208 (423)
T ss_dssp ECCCTTSCCCHHHHHHHCCTTE---EEEECCSBCTTTCBBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSC------
T ss_pred eccCCCCccCHHHHHHhcCCCc---EEEEEeCCCCCCccccCHHHHHHHHHHcCC-----EEEEEhhhhcCCCC------
Confidence 9999899999999999997644 588888999999999999999999999999 99999999875543
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
++... .+|+++.++||+++ |.++|+++++++....+...............++.+......+.+++..+. ..+++.
T Consensus 209 -~~~~~~~~di~~~s~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~ 285 (423)
T 3lvm_A 209 -IDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATE 285 (423)
T ss_dssp -CCTTTSCCSEEEEESTTTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -cChhhcCCCEEEechHHhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 22222 37999999999655 778999999987654432211000000011122333223333444555442 337888
Q ss_pred HHHHHHHHHHHHHHHHhc-CCeEeecCC---eeEEEEecCC--cHHHh---hceeeccc---------------------
Q 011842 370 VQKCLRNAHYLKDRLLDA-GISAMLNEL---SSTVVFERPQ--DEEFV---RRWQLACQ--------------------- 419 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~-g~~~~~~~~---~~iv~f~~~~--~~~~~---~~~~l~~~--------------------- 419 (476)
.++..++++++.+.|++. ++....++. .+++.|..+. ..++. .++.+...
T Consensus 286 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~v~~g~~~~~~~~~~~~~~~~~g~~~ 365 (423)
T 3lvm_A 286 MERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLND 365 (423)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTEECBCCCC-----CCCCHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhheeccCccccCCCccccHHHHHhCCCc
Confidence 999999999999999888 443333332 2456665542 22222 22222211
Q ss_pred ---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 420 ---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 420 ---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.+.+|++++..+|++||++++++|+++.+++.+
T Consensus 366 ~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 366 ELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 378999999999999999999999999887653
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=246.78 Aligned_cols=297 Identities=10% Similarity=0.048 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++..++++++++++|.+.+ ...++|+|||+|+..++.++.. |++.|+++.++|++ +...++..|++++.+|.
T Consensus 43 ~~~~~~~~~~~~la~~~~~~~~-~~v~~~~sgt~al~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 119 (411)
T 3nnk_A 43 AMTHYMNEVMALYRGVFRTENR-WTMLVDGTSRAGIEAILVSAIR--PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEV 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCS-EEEEEESCHHHHHHHHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-cEEEECCCcHHHHHHHHHHhcC--CCCEEEEecCCchHHHHHHHHHHcCCeEEEEec
Confidence 3457788899999999999853 3477888999999999988854 99999999999988 88899999999999999
Q ss_pred CCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.++.+|+++|+++|++ +++ +|++++++|++|.+.|+++|+++|++||+ |+|+|++|+.+..+ +
T Consensus 120 ~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~~~~~-------~ 184 (411)
T 3nnk_A 120 PWGEVFTPDQVEDAVKRIRPR---LLLTVQGDTSTTMLQPLAELGEICRRYDA-----LFYTDATASLGGNP-------L 184 (411)
T ss_dssp CTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHHTC-----EEEEECTTTBTTBC-------C
T ss_pred CCCCCCCHHHHHHHHhhCCCe---EEEEeCCCCCcceeccHHHHHHHHHHcCC-----EEEEECCcccCCcc-------c
Confidence 88899999999999986 554 88888999999999999999999999999 99999998765443 2
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc----cccCC-------------------------CCCcc
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV----EYLAS-------------------------RDATI 342 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~----~yl~~-------------------------~~~~~ 342 (476)
+... .+|+++.++|||+++|.++|++++++++++.+.... .|... .....
T Consensus 185 ~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (411)
T 3nnk_A 185 ETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLN 264 (411)
T ss_dssp CTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCC
T ss_pred chhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCC
Confidence 3322 389999999999888999999999998765553221 11110 00111
Q ss_pred cCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC---cHHH----hh
Q 011842 343 MGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ---DEEF----VR 412 (476)
Q Consensus 343 ~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~---~~~~----~~ 412 (476)
.++.+......++++++.....++++..++..++++++.+.|++.|+....++. .+++.|..+. ..++ .+
T Consensus 265 ~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 344 (411)
T 3nnk_A 265 HHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLE 344 (411)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHH
Confidence 234443444556667776666778999999999999999999998776544332 4667777652 2222 22
Q ss_pred --ceeec-----ccCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHH
Q 011842 413 --RWQLA-----CQGNIAHVVV-MPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 413 --~~~l~-----~~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.+. ..++.+|+++ ...+|++||++++++|+++.+++
T Consensus 345 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 345 DFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp HHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred hcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 33332 2357899998 55679999999999999988764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=246.89 Aligned_cols=297 Identities=12% Similarity=0.090 Sum_probs=226.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++..++++++++++|.+.+ ...++|+|||+|+..++.++.. |++.|+++.++|++ +...++..|++++.+|+
T Consensus 41 ~~~~~~~~l~~~la~~~g~~~~-~~~~~~~s~t~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 41 AFTGIMNETMEMLRELFQTKNR-WAYPIDGTSRAGIEAVLASVIE--PEDDVLIPIYGRFGYLLTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS-EEEEEESCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC-cEEEecCcHHHHHHHHHHHhcC--CCCEEEEecCCcccHHHHHHHHhcCCeeEEEec
Confidence 3467888999999999998753 2234788999999999888754 89999999999998 77889999999999999
Q ss_pred CCCCccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.++.+|+++|+++|+ .+++ +|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ +
T Consensus 118 ~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~~~~~-------~ 182 (416)
T 3isl_A 118 EWGTVFDPEDIIREIKKVKPK---IVAMVHGETSTGRIHPLKAIGEACRTEDA-----LFIVDAVATIGGCE-------V 182 (416)
T ss_dssp CTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCHHHHHHHHHTTC-----EEEEECTTTTTTSC-------C
T ss_pred CCCCCCCHHHHHHHHhhCCCc---EEEEEccCCCCceecCHHHHHHHHHHcCC-----EEEEECCccccCCC-------c
Confidence 9889999999999998 4554 88898999999999999999999999999 99999999855443 2
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-----------------------cccC--------CCCC
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-----------------------EYLA--------SRDA 340 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-----------------------~yl~--------~~~~ 340 (476)
+... .+|+++.++|||+++|.++|++++++++++.+.... .|+. ....
T Consensus 183 ~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~ 262 (416)
T 3isl_A 183 KVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERR 262 (416)
T ss_dssp CTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTC
T ss_pred chhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccC
Confidence 2222 389999999999988999999999998765553210 0110 0011
Q ss_pred cccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC---cHHH----
Q 011842 341 TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ---DEEF---- 410 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~---~~~~---- 410 (476)
...++.+......++++++.+...++++..++..++++++.+.|++.|+....++. .+++.|..+. ..++
T Consensus 263 ~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 342 (416)
T 3isl_A 263 LNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDML 342 (416)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHH
Confidence 11334444444556667777666678999999999999999999998765544332 3577777652 2222
Q ss_pred hh--ceeec-----ccCCEEEEEEcCCCCHHH-HHHHHHHHHHHHHHH
Q 011842 411 VR--RWQLA-----CQGNIAHVVVMPNVTIDK-LDDFLNELIENRSTW 450 (476)
Q Consensus 411 ~~--~~~l~-----~~~~~lRv~~~~~~T~ed-id~~~~~l~~~~~~~ 450 (476)
.+ ++.+. ...+.+|++++..+|.+| |++++++|+++.+++
T Consensus 343 ~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 343 LAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 22 33333 235789999977777666 999999999988764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=242.77 Aligned_cols=298 Identities=14% Similarity=0.059 Sum_probs=220.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v~~ 213 (476)
...+...++++++++++|.++ ..+++|+|||+|+..++.++.. |++.|++++++|+++ ...++..|++++.+|+
T Consensus 39 ~~~~~~~~l~~~la~~~g~~~--~~v~~t~g~t~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 114 (392)
T 2z9v_A 39 AFQLLYEKVVDKAQKAMRLSN--KPVILHGEPVLGLEAAAASLIS--PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS--CCEEESSCTHHHHHHHHHHHCC--TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEeCCchHHHHHHHHHhcC--CCCEEEEecCCcccHHHHHHHHHcCCceEEeeC
Confidence 345677789999999999864 3599999999999999988754 899999999999886 3455667999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
++++.+|+++|++++++. .++.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ ++
T Consensus 115 ~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~g~~~-------~~ 181 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINPIDAIGALVSAHGA-----YLIVDAVSSFGGMK-------TH 181 (392)
T ss_dssp CTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECCHHHHHHHHHHTTC-----EEEEECTTTBTTBS-------CC
T ss_pred CCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceeccHHHHHHHHHHcCC-----eEEEEcccccCCcc-------cc
Confidence 888889999999999642 123478888999999999999999999999999 99999999854433 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-----cccC--------CCCCcccCCCCChhHHHHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-----EYLA--------SRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-----~yl~--------~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
... .+|+++.|+|||+++|.|+|++++++++++.+.... .|+. .......++.+......+.++++
T Consensus 182 ~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 261 (392)
T 2z9v_A 182 PEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD 261 (392)
T ss_dssp GGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH
T ss_pred cccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 222 379999999999998899999999988766553210 1111 00111233333333344556666
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC----CeeEEEEecCC---cHHHh-----h-ceeecc-----cCC
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE----LSSTVVFERPQ---DEEFV-----R-RWQLAC-----QGN 421 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~iv~f~~~~---~~~~~-----~-~~~l~~-----~~~ 421 (476)
.+...|+++..++..++++++.+.|++.|+....++ ..+++.|..+. ..++. + ++.+.. ..+
T Consensus 262 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~ 341 (392)
T 2z9v_A 262 LYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGK 341 (392)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCC
Confidence 665556888999999999999999998876544323 24667777652 22222 2 333321 257
Q ss_pred EEEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMP-NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 422 ~lRv~~~~-~~T~edid~~~~~l~~~~~~~ 450 (476)
.+|+++.. .+|++||++++++|+++.+++
T Consensus 342 ~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 342 LTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp EEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 89999654 899999999999999987654
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=239.26 Aligned_cols=293 Identities=17% Similarity=0.111 Sum_probs=215.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHHHH---cCCeEE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAARM---YRMECV 209 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~~~---~G~~v~ 209 (476)
....++.+++++++++++|.++ .++++|+|+|+|+..++.++.. ..|++.|+++.++|+++...+.. .|++++
T Consensus 39 ~~~~~~~~~~~~~la~~~~~~~--~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~ 116 (382)
T 4hvk_A 39 FKAREAVQEAREKVAKLVNGGG--GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVE 116 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTT--EEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--CeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEE
Confidence 3456888899999999999975 3599999999999999988761 02899999999999999877665 499999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|+++++.+|+++|++++.+++ .+|++++++|++|.+.|+++|.++|++|| + +|+|++|+.+..+
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~~~~i~~l~~~~~-----~-li~D~a~~~~~~~----- 182 (382)
T 4hvk_A 117 YIPVGKYGEVDVSFIDQKLRDDT---ILVSVQHANNEIGTIQPVEEISEVLAGKA-----A-LHIDATASVGQIE----- 182 (382)
T ss_dssp EECBCTTSCBCHHHHHHHCCTTE---EEEECCSBCTTTCBBCCHHHHHHHHSSSS-----E-EEEECTTTBTTBC-----
T ss_pred EeccCCCCCcCHHHHHHHhccCc---eEEEEECCCCCceeeCCHHHHHHHHHHcC-----E-EEEEhHHhcCCCC-----
Confidence 99999889999999999997554 48889999999999999999999999987 3 9999999765443
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCC--C-cccCCCCChhHHHHHHHHHHhChhc
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD--A-TIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~--~-~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
++... .+|+++.++||+++ |.++|+++++++. .+ ..++.... . ...++.+......+.+++... .++
T Consensus 183 --~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~ 253 (382)
T 4hvk_A 183 --VDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA--KL---QPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AME 253 (382)
T ss_dssp --CCHHHHTCSEEEEESGGGTS-CTTCEEEEEETTC--CC---CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHH
T ss_pred --CCchhcCCCEEEEeHHHhcC-CCceEEEEEcCcc--Cc---CcccccCCCcCccccCCcCHHHHHHHHHHHHHH-Hhh
Confidence 22222 37999999999865 7789999998764 11 11111110 0 112232222233343444433 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCC--cHHHhh-----ceeeccc---------------
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQ--DEEFVR-----RWQLACQ--------------- 419 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~--~~~~~~-----~~~l~~~--------------- 419 (476)
+++..++..++++++.+.|++.+...+..+. .+++.|..+. ...+.+ ++.+...
T Consensus 254 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~ 333 (382)
T 4hvk_A 254 WREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLM 333 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHH
Confidence 7889999999999999999987544443332 2466666553 233322 2222211
Q ss_pred ---------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 420 ---------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 420 ---------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.+.+|++++..+|++|+++++++|+++.+++.+
T Consensus 334 ~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 334 ACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp HTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999887765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=247.63 Aligned_cols=354 Identities=16% Similarity=0.173 Sum_probs=246.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccc-----cccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTK-----HHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDW 147 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~-----~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~ 147 (476)
++| +.+-.+++..+.+....+.. .++|. ......+..+.++... +... .++.......+..+++.++.++
T Consensus 41 ~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~-~~~~~~p~v~~~~~~~-~~~~-~~~~~~~~~~g~~~l~~~l~~~ 115 (474)
T 1wyu_B 41 RLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGS-CTMKYNPKLHEEAARL-FADL-HPYQDPRTAQGALRLMWELGEY 115 (474)
T ss_dssp CCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTT-TCCCCCCHHHHHHHHT-TSSC-CTTSCGGGCHHHHHHHHHHHHH
T ss_pred CCC--CCCHHHHHHHHHHHHhCCCCcccCcccccc-ccccCCHHHHHHHHHH-HHhc-CCCCchhhChHHHHHHHHHHHH
Confidence 456 56678899998887765432 24441 1222234555555554 2221 1221111245778999999999
Q ss_pred HHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCc-----EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccC
Q 011842 148 FARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDG-----ILYASRESHYSVFKAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 148 la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~-----~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D 220 (476)
+++++|++. ..++|+|||+|+..++++++.. .+++ .|+++++.|.++..+++..|++++.||++++|.+|
T Consensus 116 la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d 192 (474)
T 1wyu_B 116 LKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVD 192 (474)
T ss_dssp HHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBC
T ss_pred HHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcC
Confidence 999999974 3668899999999988887632 2565 99999999999999999999999999998889999
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cc
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PI 298 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~ 298 (476)
+++|+++|.+++ .+|+++++ |++|.+ +|+++|+++|++||+ |+|+|++|+.+.+.. ....+ .+
T Consensus 193 ~~~L~~~i~~~t---~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~-----~li~Dea~~~~~~g~------~~~~~~g~ 257 (474)
T 1wyu_B 193 LEALKRELGPHV---AALMLTNP-NTLGLFERRILEISRLCKEAGV-----QLYYDGANLNAIMGW------ARPGDMGF 257 (474)
T ss_dssp HHHHHHHCSTTE---EEEEECSS-CTTSCCCTTHHHHHHHHHHHTC-----EEEEEGGGGGGTTTT------CCHHHHTC
T ss_pred HHHHHHhhCCCc---eEEEEECC-CCCcccCCCHHHHHHHHHHcCC-----EEEEeCchhhhhccC------CCcccCCC
Confidence 999999997654 47778776 579999 799999999999999 999999997654321 11111 38
Q ss_pred cEEEEcCCCCCCCCC-----CceeEEeehhhhhhhcCC------ccccCC--CCC---cc-cCCCCChhHHHHHHHHHHh
Q 011842 299 GSVSVSGHKFVGCPM-----PCGVQITRMEHINVLSSN------VEYLAS--RDA---TI-MGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 299 Dsi~~s~hK~l~~p~-----~~G~l~~~~~~~~~l~~~------~~yl~~--~~~---~~-~~sr~~~~~l~~~~~l~~~ 361 (476)
|++++|+||++++|. ++|++++++++++.+... ..|... ... .+ .++.+.....+.|..+..+
T Consensus 258 di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~ 337 (474)
T 1wyu_B 258 DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL 337 (474)
T ss_dssp SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH
Confidence 999999999999885 799999999877655421 011100 000 00 1112222344556666667
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecC---CcHHHh-----hceeecc------cCCEEEEE
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERP---QDEEFV-----RRWQLAC------QGNIAHVV 426 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~---~~~~~~-----~~~~l~~------~~~~lRv~ 426 (476)
|.+++++..++..++++++.+.|++.|+....++. .+.+.+..+ ...++. +++.++. ..+.+|++
T Consensus 338 g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis 417 (474)
T 1wyu_B 338 GLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVE 417 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEE
Confidence 77889999999999999999999988665423322 221333332 122222 2333321 24689999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++..+|+++||+++++|+++.++
T Consensus 418 ~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 418 PTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTS
T ss_pred eecCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988643
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=236.33 Aligned_cols=294 Identities=14% Similarity=0.155 Sum_probs=212.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHH---HHcCCeEEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAA---RMYRMECVKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~---~~~G~~v~~v 211 (476)
..+...++++++++++|.+++ .+++|+|||+|+..++.+++. ..+++.|++++++|.++...+ +..|++++.+
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 119 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCCC--eEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEE
Confidence 456777888999999998743 599999999999999998872 138899999999999987666 6779999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC--CCCCceEEEEecCcccccccccccC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG--FTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g--~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
|+++++.+|+++|++++.++ +.+|++++++|++|.+.|+++|.++|++|| + ++|+|++|+.+..+
T Consensus 120 ~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~-----~li~Dea~~~~~~~----- 186 (384)
T 1eg5_A 120 PVDSRGVVKLEELEKLVDED---TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKET-----LVHVDAVQTIGKIP----- 186 (384)
T ss_dssp CBCTTSCBCHHHHHHHCCTT---EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTC-----EEEEECTTTTTTSC-----
T ss_pred ccCCCCccCHHHHHHHhCCC---CeEEEEECCCCCcccccCHHHHHHHHHhcCCce-----EEEEEhhhhcCCcc-----
Confidence 99888999999999998654 447888899999999999999999999999 9 99999999733222
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC---CCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR---DATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~---~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
+++.. .+|+++.|+||+++ |.|+|++++++++ .+ ..++... .....++.+......++.+++.. .+.
T Consensus 187 --~~~~~~~~di~~~s~sK~~g-~~G~G~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~~ 257 (384)
T 1eg5_A 187 --FSLEKLEVDYASFSAHKFHG-PKGVGITYIRKGV--PI---RPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA-VEE 257 (384)
T ss_dssp --CCCTTTCCSEEEEEGGGGTS-CTTCEEEEECTTS--CC---CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH-HHT
T ss_pred --cCchhcCCCEEEecHHHhcC-CCceEEEEEcCCC--cc---ccccccCcccccccCCCCChHHHHHHHHHHHHH-HHh
Confidence 12222 37999999999866 5669999998864 11 1111110 01122333322333344455543 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecC---CeeEEEEecCC--cHHHhh-----ceeecc-----------------
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNE---LSSTVVFERPQ--DEEFVR-----RWQLAC----------------- 418 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~iv~f~~~~--~~~~~~-----~~~l~~----------------- 418 (476)
+++..++..++++++.+.|++.|+....++ ....+.|..++ ..++.+ ++.+..
T Consensus 258 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~ 337 (384)
T 1eg5_A 258 LSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDA 337 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHH
Confidence 788899999999999999998776544332 12455665542 233322 222221
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
..+.+|++++..+|++|+++++++|+++.+++.+.+
T Consensus 338 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 380 (384)
T 1eg5_A 338 MGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDLTG 380 (384)
T ss_dssp TTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred cCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 126899999999999999999999999988765443
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-27 Score=238.46 Aligned_cols=292 Identities=17% Similarity=0.109 Sum_probs=214.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHHHHH---cCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARM---YRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~~~~---~G~~v~~ 210 (476)
...+...++++++++++|.++ ..+++|+|||+|+..++.+++.. .|++.|++++++|.++...++. .|++++.
T Consensus 40 ~~~~~~~~l~~~la~~~g~~~--~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (382)
T 4eb5_A 40 KAREAVQEAREKVAKLVNGGG--GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEY 117 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT--EEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEE
Confidence 345788889999999999874 35899999999999999988711 2899999999999999877765 5999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+|+++++.+|+++|+++|.++ +.+|++++++|++|.+.|+++|.++|++||+ | |+|++|+.+..+
T Consensus 118 v~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~-i~D~a~~~g~~~------ 182 (382)
T 4eb5_A 118 IPVGKYGEVDVSFIDQKLRDD---TILVSVQHANNEIGTIQPVEEISEVLAGKAA-----L-HIDATASVGQIE------ 182 (382)
T ss_dssp ECBCTTSCBCHHHHHHHCCTT---EEEEECCSBCTTTCBBCCHHHHHHHHTTSSE-----E-EEECTTTBTTBC------
T ss_pred eccCCCCccCHHHHHHHhcCC---CeEEEEeccCCCccccCCHHHHHHHHHHCCC-----E-EEEcchhcCCcc------
Confidence 999888999999999998654 3488888999999999999999999999999 9 999999843322
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC---CCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR---DATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~---~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
+++.. .+|+++.|+||+++ |.|+|+++++++. .+ ..++.+. .....++.+......+.++++.+ .+++
T Consensus 183 -~~~~~~~~di~~~s~sK~~g-~~g~G~~~~~~~~--~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~ 254 (382)
T 4eb5_A 183 -VDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA--KL---QPVILGGGQENGLRSGSENVPSIVGFGKAAEIT-AMEW 254 (382)
T ss_dssp -CCHHHHTCSEEEEETGGGTC-CSSCEEEEEETTC--CC---CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HHHH
T ss_pred -cCccccCCCEEEeehHHhcC-CCceEEEEEcccc--cc---CceecCCCccccccCCCccHHHHHHHHHHHHHH-HHhH
Confidence 22222 37999999999855 7789999998763 11 1111110 01112333322233444555544 3467
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCC--cHHHhh-----ceeecc-----------------
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQ--DEEFVR-----RWQLAC----------------- 418 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~--~~~~~~-----~~~l~~----------------- 418 (476)
+++.++..++++++.+.|++.+...+..+. .+++.|..++ ..++.+ ++.+..
T Consensus 255 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~ 334 (382)
T 4eb5_A 255 REEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMA 334 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHH
Confidence 888999999999999999987333343332 4466676552 233322 222211
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+.+|++++..+|++|+++++++|+++.+++.+
T Consensus 335 ~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 335 CGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp TTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999999877654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=241.21 Aligned_cols=293 Identities=15% Similarity=0.154 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~~ 214 (476)
..++.+++++++++++|.+++ ..+++|+|||+|+..++.++.. |++.|++++++|.+ +...++..|++++.+|.+
T Consensus 65 ~~~~~~~~~~~la~~~g~~~~-~~v~~t~g~t~al~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 141 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATIANAVE--PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKP 141 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-cEEEEeCchHHHHHHHHHhccC--CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecC
Confidence 458889999999999999643 2599999999999999988865 89999999999999 999999999999999998
Q ss_pred CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+++.+|+++|++++.+ +++ +|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+ ++
T Consensus 142 ~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~-------~~ 206 (393)
T 1vjo_A 142 WGEVFSLEELRTALETHRPA---ILALVHAETSTGARQPLEGVGELCREFGT-----LLLVDTVTSLGGVP-------IF 206 (393)
T ss_dssp TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHHTC-----EEEEECTTTTTTSC-------CC
T ss_pred CCCCCCHHHHHHHHhhCCce---EEEEeccCCCcceeccHHHHHHHHHHcCC-----EEEEECCccccCcC-------Cc
Confidence 8888999999999987 554 78888999999999999999999999999 99999999843322 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC----ccccCC--------CCCcccC-CCCChhHHHHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN----VEYLAS--------RDATIMG-SRNGHAPIFLWYTLN 359 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~----~~yl~~--------~~~~~~~-sr~~~~~l~~~~~l~ 359 (476)
... .+|+++.++||++++|.++|++++++++++.+... ..+..+ ......+ +.+......+..+++
T Consensus 207 ~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~ 286 (393)
T 1vjo_A 207 LDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR 286 (393)
T ss_dssp TTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH
T ss_pred ccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHH
Confidence 222 37999999999999888999999999876655221 111110 0001122 444333445556666
Q ss_pred HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC---cHHH----h-h-ceeecc-----cCCE
Q 011842 360 RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ---DEEF----V-R-RWQLAC-----QGNI 422 (476)
Q Consensus 360 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~---~~~~----~-~-~~~l~~-----~~~~ 422 (476)
.+...++++..++..++++++.+.|++.|+....++. .+++.|..+. ..++ . + ++.+.. ..+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 366 (393)
T 1vjo_A 287 LIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKV 366 (393)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTE
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCE
Confidence 6545578889999999999999999988765443322 3566676652 2222 2 2 344321 2478
Q ss_pred EEEEE-cCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVV-MPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~-~~~~T~edid~~~~~l~~~~ 447 (476)
+|+++ ...++++++++++++|+++.
T Consensus 367 iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 367 WRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEEeCCccCChHHHHHHHHHHHHHHh
Confidence 99995 45567889999999998764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=238.81 Aligned_cols=294 Identities=14% Similarity=0.149 Sum_probs=219.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v~~ 213 (476)
...+...++++++++++|.+.+...+++|+|||+|+..++.+++ + +.|++++++|+++ ...++..|++++.+|.
T Consensus 30 ~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~-d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (353)
T 2yrr_A 30 EVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---R-GPVLVLVNGAFSQRVAEMAALHGLDPEVLDF 105 (353)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---C-CCEEEEECSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---C-CcEEEEcCCCchHHHHHHHHHcCCceEEEeC
Confidence 34577889999999999996333569999999999998887764 2 6788889899984 5667888999999999
Q ss_pred CCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
++++.+|+++|++++++ +++ +|++++++|++|.+.|+++|.++|++||+ |+|+|++|+.+..+ +
T Consensus 106 ~~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~~~~i~~l~~~~~~-----~li~D~a~~~~~~~-------~ 170 (353)
T 2yrr_A 106 PPGEPVDPEAVARALKRRRYR---MVALVHGETSTGVLNPAEAIGALAKEAGA-----LFFLDAVTTLGMLP-------F 170 (353)
T ss_dssp CTTSCCCHHHHHHHHHHSCCS---EEEEESEETTTTEECCHHHHHHHHHHHTC-----EEEEECTTTTTTSC-------C
T ss_pred CCCCCCCHHHHHHHHHhCCCC---EEEEEccCCCcceecCHHHHHHHHHHcCC-----eEEEEcCccccccc-------c
Confidence 88889999999999987 444 78888999999999999999999999999 99999999744332 2
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccC-------CCCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLA-------SRDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~-------~~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
+... .+|++++++|||+++|.|+|+++++++.++.+.... .|+. .......++.+......++++++.+..
T Consensus 171 ~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 250 (353)
T 2yrr_A 171 SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLE 250 (353)
T ss_dssp CHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 2222 379999999999988889999999998776653211 1110 001112334443333445566666655
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--CeeEEEEecCC---cHHHh-----hceeec-----ccCCEEEEEEc
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSSTVVFERPQ---DEEFV-----RRWQLA-----CQGNIAHVVVM 428 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~iv~f~~~~---~~~~~-----~~~~l~-----~~~~~lRv~~~ 428 (476)
.++++..++..++++++.+.|++.|+....++ ...++.|..+. ..++. ++..+. ...+.+|++++
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~ 330 (353)
T 2yrr_A 251 EGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLM 330 (353)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecC
Confidence 67889999999999999999998876544333 34555677652 23332 233332 12468999999
Q ss_pred CCCCHHHHH-HHHHHHHHHHH
Q 011842 429 PNVTIDKLD-DFLNELIENRS 448 (476)
Q Consensus 429 ~~~T~edid-~~~~~l~~~~~ 448 (476)
..+|++|++ +++++|+++.+
T Consensus 331 ~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 331 GEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHh
Confidence 899999999 99999988764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=237.57 Aligned_cols=292 Identities=12% Similarity=0.050 Sum_probs=216.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~v~~ 213 (476)
...+...++++++++++|.++ ..+++|+|||+|+..++.++.. |++.|+++.++|+++. ..++..|++++.++.
T Consensus 31 ~~~~~~~~l~~~la~~~g~~~--~~i~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 106 (352)
T 1iug_A 31 AAREVFLKARGLLREAFRTEG--EVLILTGSGTLAMEALVKNLFA--PGERVLVPVYGKFSERFYEIALEAGLVVERLDY 106 (352)
T ss_dssp HHHHHHHHHHHHHHHHHTCSS--EEEEEESCHHHHHHHHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCC--ceEEEcCchHHHHHHHHHhccC--CCCeEEEEeCCchhHHHHHHHHHcCCceEEEeC
Confidence 345677889999999999874 3599999999999999988754 8999999999999965 455667999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++++.+|+++|++ +++ .+|++++++|++|.+.|+++|.++|++| |+ |+|+|++|+.+..+
T Consensus 107 ~~~~~~d~~~l~~---~~~---~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~-----~li~D~a~~~~~~~------- 168 (352)
T 1iug_A 107 PYGDTPRPEDVAK---EGY---AGLLLVHSETSTGALADLPALARAFKEKNPEG-----LVGADMVTSLLVGE------- 168 (352)
T ss_dssp CTTCCCCTTTSCC---SSC---SEEEEESEETTTTEECCHHHHHHHHHHHCTTC-----EEEEECTTTBTTBC-------
T ss_pred CCCCCCCHHHHhc---cCC---cEEEEEEecCCcceecCHHHHHHHHHhhCCCC-----EEEEECCccccCcc-------
Confidence 8888899998877 333 3788889999999999999999999999 99 99999999754332
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccC-------CCCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA-------SRDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~-------~~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
++... .+|+++.++|||+++|.|+|+++++++.++.+.....|+. .......++.+......+.++++.+..
T Consensus 169 ~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 248 (352)
T 1iug_A 169 VALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP 248 (352)
T ss_dssp CCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG
T ss_pred eeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 22222 3799999999999989999999999886654321000100 000111233332233344556665543
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC---cHHHhh-----ceeecc-----cCCEEEEEEcC
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ---DEEFVR-----RWQLAC-----QGNIAHVVVMP 429 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~---~~~~~~-----~~~l~~-----~~~~lRv~~~~ 429 (476)
. +++..++..++++++.+.|++.|+....++ ..+++.|..+. ..++.+ ++.+.. ..+.+|++++.
T Consensus 249 ~-~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~ 327 (352)
T 1iug_A 249 R-LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMG 327 (352)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCS
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccc
Confidence 3 788899999999999999998876544332 45677777652 233322 233321 24789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~~~ 450 (476)
.+|++|+++++++|+++.+++
T Consensus 328 ~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 328 AYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=237.69 Aligned_cols=298 Identities=14% Similarity=0.054 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchH----HHHHHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYS----VFKAARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S----~~~~~~~~G~~v~~v 211 (476)
.....++++++++++|.+ +...+++|+|||+|+..++.+++. ..+++.|+++.++|.+ +...++..|++++.+
T Consensus 71 ~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 149 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINAR-SPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFV 149 (420)
T ss_dssp HHHHHHHHHHHHHHTTCS-CGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCC-CCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEe
Confidence 355667888899999983 123599999999999999988731 2488999999999998 667788899999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
|.++++.+|+++|+++|.++ +.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+
T Consensus 150 ~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~~~~~------- 214 (420)
T 1t3i_A 150 QLDEQESFDLEHFKTLLSEK---TKLVTVVHISNTLGCVNPAEEIAQLAHQAGA-----KVLVDACQSAPHYP------- 214 (420)
T ss_dssp CBCTTSSBCHHHHHHHCCTT---EEEEEEESBCTTTCBBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSC-------
T ss_pred ccCCCCCcCHHHHHHhhCCC---ceEEEEeCCcccccCcCCHHHHHHHHHHcCC-----EEEEEhhhccCCcc-------
Confidence 99888899999999999654 4588889999999999999999999999999 99999999865443
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccC-------------CCCCccc-CCCCChhHHHHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA-------------SRDATIM-GSRNGHAPIFLWY 356 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~-------------~~~~~~~-~sr~~~~~l~~~~ 356 (476)
+++.. ..|+++.|+||.++ |.++|++++++++++.+......-. .....+. ++.+....++++.
T Consensus 215 ~~~~~~~~di~~~s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 293 (420)
T 1t3i_A 215 LDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGA 293 (420)
T ss_dssp CCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHH
T ss_pred CchhhcCCCEEEEehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHH
Confidence 12222 37999999999554 7779999999887766532211000 0001111 2332222333444
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC-----CeeEEEEecCC--cHHHhh-----ceeeccc----
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE-----LSSTVVFERPQ--DEEFVR-----RWQLACQ---- 419 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~-----~~~iv~f~~~~--~~~~~~-----~~~l~~~---- 419 (476)
+++.+...+++++.++..++++++.+.|++. ++....++ ..+++.|..++ ..++.+ ++.+...
T Consensus 294 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~ 373 (420)
T 1t3i_A 294 AVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT 373 (420)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccc
Confidence 5666655578889999999999999999997 54433332 26677777653 223322 2233221
Q ss_pred ---------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 420 ---------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 420 ---------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.+.+|++++..+|++|+++++++|+++.+.+.+
T Consensus 374 ~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 374 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred hHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999876543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=235.46 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v~~~ 214 (476)
..+...++++++++++|.+++ ..+++|+|||+|+..++.++.. |++.|+++.++|++. ...++..|++++.+|.+
T Consensus 50 ~~~~~~~l~~~la~~~g~~~~-~~i~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 126 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNI-ATFCLSASGHGGMEATLCNLLE--DGDVILIGHTGHWGDRSADMATRYGADVRVVKSK 126 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCS-EEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCC-cEEEEcCcHHHHHHHHHHHHhC--CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCC
Confidence 346778889999999998743 3588999999999999988754 899999999999884 34556689999999998
Q ss_pred CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+++.+|+++|+++|++ +++ +|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ ++
T Consensus 127 ~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~l~~i~~~~~~~~~-----~li~D~a~~~~~~~-------~~ 191 (393)
T 2huf_A 127 VGQSLSLDEIRDALLIHKPS---VLFLTQGDSSTGVLQGLEGVGALCHQHNC-----LLIVDTVASLGGAP-------MF 191 (393)
T ss_dssp TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHTTC-----EEEEECTTTBTTBC-------CC
T ss_pred CCCCCCHHHHHHHHhccCCc---EEEEEccCCCccccCCHHHHHHHHHHcCC-----EEEEEcccccCCCC-------cc
Confidence 8888999999999987 555 78888999999999999999999999999 99999998754332 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC----ccccCC------------CCCcccCCCCChhHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN----VEYLAS------------RDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~----~~yl~~------------~~~~~~~sr~~~~~l~~~~ 356 (476)
... .+|+++.++||++++|.|+|++++++++++.+... ..|... ......++.+.....++.+
T Consensus 192 ~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 271 (393)
T 2huf_A 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLRE 271 (393)
T ss_dssp TTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHH
T ss_pred hhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHH
Confidence 222 37999999999988888999999998876665322 222110 0011123333333334445
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--Cee-EEEEecCC---cHHH----h-h-ceeecc-----c
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSS-TVVFERPQ---DEEF----V-R-RWQLAC-----Q 419 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~-iv~f~~~~---~~~~----~-~-~~~l~~-----~ 419 (476)
+++.+...++++..++..++++++.+.|++.|+....++ .++ ++.|..+. ..++ . + ++.+.. .
T Consensus 272 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~ 351 (393)
T 2huf_A 272 AIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTA 351 (393)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccc
Confidence 666554457888999999999999999999876544332 133 66676652 2222 2 2 344432 3
Q ss_pred CCEEEEEEcC-CCCHHHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMP-NVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 420 ~~~lRv~~~~-~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+.+|++++. .++++++++++++|+++.+++.
T Consensus 352 ~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 352 GQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 4789999955 5689999999999999887653
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-26 Score=233.63 Aligned_cols=296 Identities=11% Similarity=0.089 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~~ 214 (476)
..++..++++++++++|.+. ..++++|+|||+|+..++.++.. |++.|+++..+|++ +...++..|++++.+|.+
T Consensus 54 ~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 130 (393)
T 3kgw_A 54 MLQIMEEIKQGIQYVFQTRN-PLTLVVSGSGHCAMETALFNLLE--PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKK 130 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-SEEEEESCCTTTHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CcEEEEeCCcHHHHHHHHHhcCC--CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCC
Confidence 35777889999999999874 33588999999999999988854 89999999988874 477888899999999998
Q ss_pred CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
.++.+|+++|++++++ +++ +|++++++|++|.+.|+++|.++|++||+ |+++|++|+.+..+ ++
T Consensus 131 ~~~~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~De~~~~g~~~-------~~ 195 (393)
T 3kgw_A 131 PGEHYTLQEVEEGLAQHKPV---LLFLVHGESSTGVVQPLDGFGELCHRYQC-----LLLVDSVASLGGVP-------IY 195 (393)
T ss_dssp TTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHTTC-----EEEEECTTTTTTSC-------CC
T ss_pred CCCCCCHHHHHHHHhhCCCc---EEEEeccCCcchhhccHHHHHHHHHHcCC-----EEEEECCccccCcc-------cc
Confidence 8889999999999987 555 88888999999999999999999999999 99999999744332 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc----cc----------cCC--CCCcccCCCCChhHHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV----EY----------LAS--RDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~----~y----------l~~--~~~~~~~sr~~~~~l~~~~ 356 (476)
... .+|+++.++||++++|.++|++++++++++.+.... .+ ... ......++.+......+.+
T Consensus 196 ~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 275 (393)
T 3kgw_A 196 MDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRE 275 (393)
T ss_dssp TTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHH
T ss_pred hhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHH
Confidence 222 379999999999988899999999998766553211 11 100 0011123333333444556
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCC---cHHH----h-h-ceeec-----c
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQ---DEEF----V-R-RWQLA-----C 418 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~---~~~~----~-~-~~~l~-----~ 418 (476)
++..+...++++..++..++++++.+.|++.|+....++. ..++.|..+. ..++ . + ++.+. .
T Consensus 276 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 355 (393)
T 3kgw_A 276 SLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPT 355 (393)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGG
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccC
Confidence 6666666778999999999999999999998765543322 2455566542 2222 2 2 33332 2
Q ss_pred cCCEEEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMP-NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 ~~~~lRv~~~~-~~T~edid~~~~~l~~~~~~~ 450 (476)
.++.+|+++++ .+|++|+++++++|+++.+++
T Consensus 356 ~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 356 EERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 35789999844 569999999999999988764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=235.75 Aligned_cols=302 Identities=12% Similarity=0.099 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEEEeCCCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKVDCLIS 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~v~~~~~ 216 (476)
....++++++++++|.+++ ..+++|+|||+|+..++.++.. |++.|++++++|.++. ..++..|++++.++.+.+
T Consensus 51 ~~~~~l~~~la~~~~~~~~-~~v~~~~g~t~al~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 127 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENR-ATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPD 127 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCC-cEEEECCcHHHHHHHHHHHhcC--CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCC
Confidence 5667888899999998753 2489999999999999988765 8999999999999974 577889999999999888
Q ss_pred CccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 217 GEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 217 g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
+.+|+++|++++++ +++ +|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+ ++..
T Consensus 128 ~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~~~~i~~l~~~~~~-----~li~Dea~~~g~~~-------~~~~ 192 (396)
T 2ch1_A 128 RPFSLETLARAIELHQPK---CLFLTHGDSSSGLLQPLEGVGQICHQHDC-----LLIVDAVASLCGVP-------FYMD 192 (396)
T ss_dssp SCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHTTC-----EEEEECTTTBTTBC-------CCTT
T ss_pred CCCCHHHHHHHHHhCCCC---EEEEECCCCCCceecCHHHHHHHHHHcCC-----EEEEEccccccCCc-------cchh
Confidence 89999999999987 554 78888999999999999999999999999 99999999844332 2222
Q ss_pred c-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC----ccccCC---------C---CCcccCCCCChhHHHHHHHH
Q 011842 296 K-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN----VEYLAS---------R---DATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 296 ~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~----~~yl~~---------~---~~~~~~sr~~~~~l~~~~~l 358 (476)
. .+|+++.++||++++|.++|+++++++.++.+... ..+..+ . .....++.+......+.+++
T Consensus 193 ~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 272 (396)
T 2ch1_A 193 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREAL 272 (396)
T ss_dssp TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHH
T ss_pred hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHH
Confidence 2 27999999999999999999999998876655321 111100 0 01112333323334445566
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecC---CcHHH----hh--ceeecc-----cC
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERP---QDEEF----VR--RWQLAC-----QG 420 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~---~~~~~----~~--~~~l~~-----~~ 420 (476)
+.+..+++++..++..++++++.+.|++.|+....++. ..++.|..+ +..++ .+ ++.+.. ..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~ 352 (396)
T 2ch1_A 273 AQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFG 352 (396)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCC
Confidence 65545678889999999999999999998765443332 136677765 22222 21 333322 34
Q ss_pred CEEEEEEc-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011842 421 NIAHVVVM-PNVTIDKLDDFLNELIENRSTWYEDGKRQP 458 (476)
Q Consensus 421 ~~lRv~~~-~~~T~edid~~~~~l~~~~~~~~~~~~~~~ 458 (476)
+.+|++++ ..+|++|+++++++|+++.+++.++...+|
T Consensus 353 ~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 391 (396)
T 2ch1_A 353 KAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIFEE 391 (396)
T ss_dssp TEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCCC-
T ss_pred CEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCccEEecc
Confidence 78999994 567999999999999999888765555444
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=236.29 Aligned_cols=291 Identities=12% Similarity=0.049 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.+.+.++++++++++|.+ ..+++++|++||..++.++.. +++.|+++.+.|.++..+++..|++++.++.
T Consensus 108 ~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~~~al~~l~~--~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~---- 177 (427)
T 2w8t_A 108 FHDHMEVEQALRDFYGTT----GAIVFSTGYMANLGIISTLAG--KGEYVILDADSHASIYDGCQQGNAEIVRFRH---- 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHHSC--TTCEEEEETTCCHHHHHHHHHSCSEEEEECT----
T ss_pred cHHHHHHHHHHHHHhCCC----ceEEecCcHHHHHHHHHHhcC--CCCEEEECCcccHHHHHHHHHcCCeeEEeCC----
Confidence 467778888899999875 267888889999998887754 8999999999999999999999999998885
Q ss_pred ccCHHHHHHHHHcCCC-CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccCC-CCCC
Q 011842 218 EIDCADFKAKLLQNKD-KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKAP-KVSF 294 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~~-~~~~ 294 (476)
+|+++|+++|.+... ++.+|+++.+.+++|.+.|+++|.++|++||+ ++++|++|+++.+.. ..... .++.
T Consensus 178 -~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~-----~li~Dea~~~~~~~~~g~~~~~~~~~ 251 (427)
T 2w8t_A 178 -NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGA-----MVLVDEAHSMGFFGPNGRGVYEAQGL 251 (427)
T ss_dssp -TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTC-----EEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred -CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCchHhhcCC
Confidence 499999999987432 45688888889999999999999999999999 999999998766531 11110 0222
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
...+|+++.++||+++ +.+ |++++++++++.+... ..|.. .++.+......+.++++.+. .+++..++.
T Consensus 252 ~~~~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~~~~~------~~~~~~~~~aa~~~al~~~~--~~~~~~~~~ 321 (427)
T 2w8t_A 252 EGQIDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACRPYIF------TASLPPSVVATATTSIRKLM--TAHEKRERL 321 (427)
T ss_dssp TTCCSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCHHHHS------SCCCCHHHHHHHHHHHHHHT--SCHHHHHHH
T ss_pred CcCCcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcccccc------cCCCCHHHHHHHHHHHHHHh--cCHHHHHHH
Confidence 2347999999999998 444 9999988877666432 23322 12222122222334455442 357788899
Q ss_pred HHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCCc---HHHh-----hceeecc--------cCCEEEEEEcCCCCHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQD---EEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~~---~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edi 436 (476)
.+++++|.+.|++.|+....++ .++++.+..++. ..+. +++.+.. ..+.+|++++..+|++||
T Consensus 322 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i 401 (427)
T 2w8t_A 322 WSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQI 401 (427)
T ss_dssp HHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHH
Confidence 9999999999999887554344 567777776642 2222 2333321 135899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 011842 437 DDFLNELIENRSTWYEDG 454 (476)
Q Consensus 437 d~~~~~l~~~~~~~~~~~ 454 (476)
++++++|+++.+++.+.+
T Consensus 402 ~~~~~~l~~~l~~~~~~~ 419 (427)
T 2w8t_A 402 QTVLGMFQAAGRAVGVIG 419 (427)
T ss_dssp HHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 999999999988765543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=232.66 Aligned_cols=296 Identities=13% Similarity=0.060 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHH----HHHHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSV----FKAARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v 211 (476)
.....++++++++++|.+ +...+++|+|+|+|+..++.+++. ..+++.|++++++|.+. ...++..|++++.+
T Consensus 66 ~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 144 (406)
T 1kmj_A 66 TEKMENVRKRASLFINAR-SAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_dssp HHHHHHHHHHHHHHTTCS-CGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCC-CCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence 456677888899999983 124599999999999999988742 24889999999999764 34567789999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
|.++++.+|+++|++++.++ +.+|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+
T Consensus 145 ~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~~~~~g~~~------- 209 (406)
T 1kmj_A 145 PLNPDGTLQLETLPTLFDEK---TRLLAITHVSNVLGTENPLAEMITLAHQHGA-----KVLVDGAQAVMHHP------- 209 (406)
T ss_dssp CBCTTSCBCGGGHHHHCCTT---EEEEEEESBCTTTCCBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSC-------
T ss_pred ecCCCCCcCHHHHHHHhccC---CeEEEEeCCCccccCcCCHHHHHHHHHHcCC-----EEEEEchhhcCCCC-------
Confidence 99888899999999998654 4588889999999999999999999999999 99999999865432
Q ss_pred CCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCcc---c---c--------CCCCCcc-cCCCCChhHHHHH
Q 011842 292 VSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE---Y---L--------ASRDATI-MGSRNGHAPIFLW 355 (476)
Q Consensus 292 ~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~---y---l--------~~~~~~~-~~sr~~~~~l~~~ 355 (476)
++... ..|+++.|+||+++ |.++|++++++++++.+..... | + ......+ .++.+....+++.
T Consensus 210 ~~~~~~~~d~~~~s~~K~~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 288 (406)
T 1kmj_A 210 VDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLG 288 (406)
T ss_dssp CCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHH
T ss_pred CcccccCCCEEEEEchhccC-CCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHH
Confidence 22222 37999999999885 7779999999887766532210 0 0 0000011 1233222223333
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--CeeEEEEecCC--cHHHhh-----ceeecc--------
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSSTVVFERPQ--DEEFVR-----RWQLAC-------- 418 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~iv~f~~~~--~~~~~~-----~~~l~~-------- 418 (476)
++++.+...++++..++..++++++.+.|++.+...+..+ ..+++.|..++ ..++.+ +..+..
T Consensus 289 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 368 (406)
T 1kmj_A 289 AALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPL 368 (406)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHH
Confidence 4555554457888899999999999999998733334444 56777777652 233322 232221
Q ss_pred -----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 -----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 -----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|++++..+|++|+++++++|+++.+.+
T Consensus 369 ~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 369 MAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 13789999999999999999999999987653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=234.38 Aligned_cols=288 Identities=15% Similarity=0.087 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++.+++++++++++|.+. ..++++|+|||+|+..++.+... | .+++....|++ +...++..|++++.++.
T Consensus 40 ~~~~~~~~~~~~la~~~g~~~-~~~v~~~~g~t~al~~~~~~l~~--~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~ 114 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLELPS-NYEVLFLASATEIWERIIQNCVE--K--KSFHCVNGSFSKRFYEFAGELGREAYKEEA 114 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCT-TEEEEEESCHHHHHHHHHHHHCS--S--EEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CcEEEEeCCchHHHHHHHHhccC--C--cEEEEcCcHHHHHHHHHHHHhCCCeEEEec
Confidence 456888899999999999863 35689999999999999988764 5 44444556666 44567788999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh-CCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES-GFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~-g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.++.+|+++|+ +.+++ .+|++++++|++|.+.|+++|.++|++| |+ |+|+|++|+.+..+ .
T Consensus 115 ~~~~~~d~~~l~--~~~~~---~~v~~~~~~nptG~~~~l~~i~~la~~~p~~-----~li~D~a~~~~~~~-------~ 177 (362)
T 3ffr_A 115 AFGKGFYPADIT--VPADA---EIICLTHNETSSGVSMPVEDINTFRDKNKDA-----LIFVDAVSSLPYPK-------F 177 (362)
T ss_dssp CTTCCCCGGGCC--CCTTC---CEEEEESEETTTTEECCHHHHTTSGGGSTTS-----EEEEECTTTTTSSC-------C
T ss_pred CCCCCCCHHHHh--ccCCc---cEEEEEcCCCCcceeCCHHHHHHHHHhCCCC-----EEEEecccccCCcc-------c
Confidence 888899999998 43334 4888889999999999999999999999 99 99999999765443 2
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC------ccccCC--------CCCcccCCCCChhHHHHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN------VEYLAS--------RDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~------~~yl~~--------~~~~~~~sr~~~~~l~~~~~l 358 (476)
+..+ +|+++.++|||+++|.|+|++++++++++.+... ..|... ......++.+......++.++
T Consensus 178 ~~~~-~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 256 (362)
T 3ffr_A 178 DWTK-IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVT 256 (362)
T ss_dssp CTTS-CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHH
T ss_pred ChhH-CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Confidence 2222 7999999999999899999999998865544211 111110 001113344434444566666
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC----CeeEEEEecCC-cHHHhh-----ceeec-----ccCCE
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE----LSSTVVFERPQ-DEEFVR-----RWQLA-----CQGNI 422 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~----~~~iv~f~~~~-~~~~~~-----~~~l~-----~~~~~ 422 (476)
+.+...+++++.++..++++++.+.|++. |+....++ ...++.|..++ ..++.+ ++.+. ...+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~ 336 (362)
T 3ffr_A 257 GDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQ 336 (362)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTE
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCE
Confidence 66656678999999999999999999998 54433312 23566666653 333322 33332 13578
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+|++++..+|++||++++++|+++
T Consensus 337 iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 337 IRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999876
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=242.33 Aligned_cols=297 Identities=9% Similarity=-0.037 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHH----HHHHHHcCCeE-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-FPDGILYASRESHYSV----FKAARMYRMEC----- 208 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~----~~~~~~~G~~v----- 208 (476)
.+.+++++++++++|+++ .++++|+|+|+++..++.+.... .+++.|+++.++|.+. ...++..|+++
T Consensus 111 ~~~~~l~~~la~~~g~~~--~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v 188 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANE--KEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMR 188 (465)
T ss_dssp GTTHHHHGGGHHHHTCCG--GGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEE
T ss_pred HhHHHHHHHHHHHcCCCc--CCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeE
Confidence 555678899999999975 35999999999999888887541 1345699999999884 44677789874
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
..+|.+.++.+|+++|+++|++++.++.+|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+
T Consensus 189 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~-----~vi~D~a~~~g~~~---- 259 (465)
T 3e9k_A 189 MIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGC-----YVGFDLAHAVGNVE---- 259 (465)
T ss_dssp EECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSC----
T ss_pred EEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCC-----EEEEEhhhhcCCcC----
Confidence 345666778999999999998543345688999999999999999999999999999 99999999877665
Q ss_pred CCCCCCcc-cccEEEEcCCCCC-CCCCCceeEEeehhhhhhhcCC-ccccCC---------CCC--------cccCCCCC
Q 011842 289 APKVSFKK-PIGSVSVSGHKFV-GCPMPCGVQITRMEHINVLSSN-VEYLAS---------RDA--------TIMGSRNG 348 (476)
Q Consensus 289 ~~~~~~~~-~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~~~l~~~-~~yl~~---------~~~--------~~~~sr~~ 348 (476)
++..+ .+|++++++||++ ++|.++|++++++++.+.+... ..|... ... -..++.+.
T Consensus 260 ---~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 336 (465)
T 3e9k_A 260 ---LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPI 336 (465)
T ss_dssp ---CCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCH
T ss_pred ---CchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccH
Confidence 33333 3899999999999 4788899999998876544211 111000 000 01234554
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-----------CCeEeecC----CeeEEEEecCCc-HHHh-
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-----------GISAMLNE----LSSTVVFERPQD-EEFV- 411 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-----------g~~~~~~~----~~~iv~f~~~~~-~~~~- 411 (476)
...+++++++..+...+++++.++..++++++.+.|++. |+..+.++ ..+++.|..+.+ ..+.
T Consensus 337 ~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~ 416 (465)
T 3e9k_A 337 LLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQ 416 (465)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHH
Confidence 556677788888777789999999999999999999983 44433332 156777766521 1221
Q ss_pred ----hceeecc-cCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 ----RRWQLAC-QGNIAHVVV-MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 ----~~~~l~~-~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~ 449 (476)
+++.+.. ..+.+|+++ +.++|.+||++++++|+++.++
T Consensus 417 ~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 417 ELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 2333332 358999998 8999999999999999988753
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=231.51 Aligned_cols=296 Identities=9% Similarity=0.059 Sum_probs=215.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~v~~ 213 (476)
...++.+++++++++++|.+.+....++|+|||+|+..++.++.. |++.|+++.+.|++.. ..+...|++++.++.
T Consensus 49 ~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 49 EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT--KKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC--TTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC--CCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 445788899999999999975433455589999999999988865 8999999888776643 456778999999999
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+.++.+|+++|++++.++++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+..+ ++
T Consensus 127 ~~~~~~d~~~l~~~~~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~~~~~~~~~-------~~ 191 (376)
T 3f0h_A 127 EHGKKLTKEKLYEYDNQNFT---GLLVNVDETSTAVLYDTMMIGEFCKKNNM-----FFVCDCVSAFLADP-------FN 191 (376)
T ss_dssp CTTCCCCHHHHHTTTTSCCC---EEEEESEETTTTEECCHHHHHHHHHHTTC-----EEEEECTTTTTTSC-------CC
T ss_pred CCCCCCCHHHHHHhhccCce---EEEEecccCCcceecCHHHHHHHHHHcCC-----EEEEEcCccccCcc-------cc
Confidence 88889999999998765554 78888899999999999999999999999 99999999866543 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC--Ccc-ccCCC-------CCcccCCCCChhHHHHHHHHHHhC
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS--NVE-YLASR-------DATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~--~~~-yl~~~-------~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
... .+|+++.++||++++|.|+|++++++++++.+.. ... |+... ......+.+.....++.++++.+.
T Consensus 192 ~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 271 (376)
T 3f0h_A 192 MNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIK 271 (376)
T ss_dssp HHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH
T ss_pred ccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 222 3799999999999988999999999987665532 111 11100 000111222122244556666665
Q ss_pred hh-cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecC--CcHHH----h-h-ceeec-----ccCCEEEEEE
Q 011842 363 YK-GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERP--QDEEF----V-R-RWQLA-----CQGNIAHVVV 427 (476)
Q Consensus 363 ~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~--~~~~~----~-~-~~~l~-----~~~~~lRv~~ 427 (476)
.. +++++.++..++++++.+.|++.|+....+..+ .++.+..+ +..++ . + ++.+. ...+.+|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~ 351 (376)
T 3f0h_A 272 KHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGH 351 (376)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEEC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEec
Confidence 55 688899999999999999999887544333333 33334322 22222 2 2 33332 1246899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
+..+|++|+++++++|+++.+
T Consensus 352 ~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 352 IGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=230.29 Aligned_cols=295 Identities=13% Similarity=0.087 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEE-ecCCCchH-HHHHHHHcCCeEEEEeCCCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILY-ASRESHYS-VFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl-~s~~~H~S-~~~~~~~~G~~v~~v~~~~~ 216 (476)
....++++++++++|.+.+...+++|+|||+|+..++.+++. +++.|+ .+...|.+ +...++..|++++.+|.+.+
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 114 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV 114 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcC--CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC
Confidence 445667777888888332223599999999999999988764 777655 55577876 56778888999999999888
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+.+|+++|+++|++++ ++.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ ++...
T Consensus 115 ~~~d~~~l~~~l~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~~~~~-------~~~~~ 181 (366)
T 1m32_A 115 ARPDVQAIDAILNADP-TISHIAMVHSETTTGMLNPIDEVGALAHRYGK-----TYIVDAMSSFGGIP-------MDIAA 181 (366)
T ss_dssp SCCCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHHTC-----EEEEECTTTTTTSC-------CCTTT
T ss_pred CCCCHHHHHHHHhcCC-CeEEEEEecccCCcceecCHHHHHHHHHHcCC-----EEEEECCccccCcC-------ccccc
Confidence 8899999999998752 23467788889999999999999999999999 99999999855443 22222
Q ss_pred -cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCC----------CCCcccCCCCChhHHHHHHHHHHhChh
Q 011842 297 -PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLAS----------RDATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 297 -~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~----------~~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
.+|+++.++|||+++|.|+|++++++++++.+... ..|... ......++.+......+.++++.+...
T Consensus 182 ~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~ 261 (366)
T 1m32_A 182 LHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKE 261 (366)
T ss_dssp TTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 37999999999998888999999999877655331 122110 000001233322233455566655445
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHhcCCeEeecC--Ce-eEEEEecCC-----cHHHh-----hceeec----ccCCEEEEE
Q 011842 365 G-FQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LS-STVVFERPQ-----DEEFV-----RRWQLA----CQGNIAHVV 426 (476)
Q Consensus 365 g-~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~-~iv~f~~~~-----~~~~~-----~~~~l~----~~~~~lRv~ 426 (476)
+ +++..++..++++++.+.|++.|+....++ .+ .++.|..+. ..++. +++.+. +..+.+|++
T Consensus 262 g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~ 341 (366)
T 1m32_A 262 GGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIG 341 (366)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEE
T ss_pred cCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEe
Confidence 5 788899999999999999998876443331 23 366676652 22332 233332 245789999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~ 448 (476)
++..+|++||++++++|+++.+
T Consensus 342 ~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 342 NIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=234.84 Aligned_cols=291 Identities=13% Similarity=0.067 Sum_probs=208.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-hhCCCcEEEecCCCchHHHHHHHH----cCCeEEEE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAARM----YRMECVKV 211 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-~~~p~~~Vl~s~~~H~S~~~~~~~----~G~~v~~v 211 (476)
......++++++++++|.++ ..+++|+|+|+++..++.+.. ...+++.|+++.++|.++...+.. .|++++.+
T Consensus 67 ~~~~~~~l~~~la~~~g~~~--~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v 144 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADP--GGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWA 144 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCG--GGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCC--CeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEE
Confidence 35677788999999999864 359999999999988877652 224889999999999986555443 69999999
Q ss_pred eCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 212 DCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 212 ~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
|++ +++.+|+++|+++|.++ +.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~g~~~------ 210 (406)
T 3cai_A 145 EVDIETGELPTWQWESLISKS---TRLVAVNSASGTLGGVTDLRAMTKLVHDVGA-----LVVVDHSAAAPYRL------ 210 (406)
T ss_dssp CCCTTTCCCCGGGHHHHCCTT---EEEEEEESBCTTTCBBCCCHHHHHHHHHTTC-----EEEEECTTTTTTCC------
T ss_pred ecCcccCCcCHHHHHHHhCCC---ceEEEEeCCcCCccccCCHHHHHHHHHHcCC-----EEEEEcccccCCCC------
Confidence 998 67889999999999654 3488889999999999999999999999999 99999999854432
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCce-eEEeehhhhhhhcCCccccCCC-CCcc-cCCCCChhHHHHHHHHHHhChh--
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCG-VQITRMEHINVLSSNVEYLASR-DATI-MGSRNGHAPIFLWYTLNRKGYK-- 364 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G-~l~~~~~~~~~l~~~~~yl~~~-~~~~-~~sr~~~~~l~~~~~l~~~g~~-- 364 (476)
+++.. .+|+++.|+||+++ |. +| ++++++++++.+.....+.... ...+ .++.+......+.++++.+...
T Consensus 211 -~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~ 287 (406)
T 3cai_A 211 -LDIRETDADVVTVNAHAWGG-PP-IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDE 287 (406)
T ss_dssp -CCHHHHCCSEEEEEGGGGTS-CS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSST
T ss_pred -CCchhcCCCEEEeehhhhcC-CC-cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhcc
Confidence 22222 37999999999886 54 88 9999988766554322111110 0011 2333322222344455544222
Q ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhcCCeEeecC---CeeEEEEecCC--cHHHh-----hceeecc----
Q 011842 365 ------------GFQKEVQKCLRNAHYLKDRLLDAGISAMLNE---LSSTVVFERPQ--DEEFV-----RRWQLAC---- 418 (476)
Q Consensus 365 ------------g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~iv~f~~~~--~~~~~-----~~~~l~~---- 418 (476)
.+++..++..++++++.+.|++.+...+..+ ..+++.|..++ ..++. +++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~ 367 (406)
T 3cai_A 288 SARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGS 367 (406)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSC
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChH
Confidence 3678888899999999999998743334333 24567777653 23332 2333321
Q ss_pred ----------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 ----------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 ----------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+.+|++++..+|++||++++++|+++
T Consensus 368 ~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 368 RVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp HHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 1368999999999999999999998753
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=232.58 Aligned_cols=362 Identities=13% Similarity=0.058 Sum_probs=245.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCc------chHHHHHHHH----HhhCCCCCCcccCccchhhHH---
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDF------DYGALAQLQH----FSINNLGDPFIESNYGVHSRQ--- 139 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~------~~~~l~~~l~----~~~n~~g~~~~~~~~~~~~~~--- 139 (476)
.+||.|-.-+.|---+.+.-...+++ +|.+.+. .++.+..--. .++...|+-....|-..++.-
T Consensus 40 ~~P~~g~~d~~ie~~l~~la~mdsnn---~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll~~ 116 (501)
T 3hl2_A 40 KCPENGWDESTLELFLHELAIMDSNN---FLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNK 116 (501)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTTBGGG---CSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHhhccCC---CcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHHHH
Confidence 67888877666655555554444543 4554432 2333322222 333455555555554444432
Q ss_pred -HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-hCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeC---
Q 011842 140 -FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPD-GILYASRESHYSVFKAARMYRMECVKVDC--- 213 (476)
Q Consensus 140 -le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~--- 213 (476)
-+..+.+|++.+ |++.. ...++++|+|.+++..++++.. ..|+ +.||+++..|.|+.+++.++|+++++|+.
T Consensus 117 ltn~l~ld~L~~~-G~~~~-~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d 194 (501)
T 3hl2_A 117 ITNSLVLDIIKLA-GVHTV-ANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLE 194 (501)
T ss_dssp HHHHHHHHHHHHT-TCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEE
T ss_pred HHHHHHHHHHHHc-CCCCC-CcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeec
Confidence 355577898887 99853 4578889999888776666544 2344 89999999999999999999999999876
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCc-cccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTV-KGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~-tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
++...+|++.|+++|++++...+.++++.++++ .+.++||++|+++|++||+ ++|||+|||+...+... .+.-
T Consensus 195 ~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gI-----pllVDeAhGah~~~~~~-lp~s 268 (501)
T 3hl2_A 195 GDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDI-----PHIVNNAYGVQSSKCMH-LIQQ 268 (501)
T ss_dssp TTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTC-----CEEEECTTCTTCHHHHH-HHHH
T ss_pred ccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCC-----eEEEeCcchhhhhhhhh-hHHH
Confidence 345789999999999987433445555544444 4577999999999999999 99999999986543211 1111
Q ss_pred CCccc-ccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 293 SFKKP-IGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 293 ~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.+..+ +|+++.|.||++++|.++++++.+++ +++.+. ..| .|++++.+++.+|+++..+|.+||++++
T Consensus 269 A~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~--~~y--------PGr~S~Spsldl~~tLL~lGr~Gy~~ll 338 (501)
T 3hl2_A 269 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS--KMY--------PGRASASPSLDVLITLLSLGSNGYKKLL 338 (501)
T ss_dssp HHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHH--HTS--------CSCBCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHH--HhC--------CCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 11223 99999999999999999888888765 454442 233 3666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc----CCeEee---cCCeeEEEEecCCc------HH-----Hhhce---ee-ccc---------
Q 011842 371 QKCLRNAHYLKDRLLDA----GISAML---NELSSTVVFERPQD------EE-----FVRRW---QL-ACQ--------- 419 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~----g~~~~~---~~~~~iv~f~~~~~------~~-----~~~~~---~l-~~~--------- 419 (476)
+++.++++||.++|++. |-.++. +|.+.-+.+..... .. |.+.. ++ +..
T Consensus 339 ~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~ 418 (501)
T 3hl2_A 339 KERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYT 418 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCee
Confidence 99999999999999984 433332 22233333322111 01 11111 11 110
Q ss_pred ------------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 420 ------------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGK 455 (476)
Q Consensus 420 ------------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~ 455 (476)
..++-+.....+|++|||.|+..|+++..++.+...
T Consensus 419 f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 419 FRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp ESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred ecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 145666777888999999999999999988865433
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-26 Score=229.12 Aligned_cols=292 Identities=10% Similarity=0.047 Sum_probs=213.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+.+|++.+..++++|+|||+|+..++.++.. |++.|++++++|.++...++..|++++.+|.++
T Consensus 68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 145 (388)
T 1j32_A 68 GEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTV 145 (388)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCG
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCc
Confidence 356999999999999999764445799999999999999988855 899999999999999999999999999999875
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++++.++ +.+|++++++|++|.+ +++++|+++|++||+ ++++|++|+++.+......+
T Consensus 146 ~~~~~~d~~~l~~~l~~~---~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~~~~~~ 217 (388)
T 1j32_A 146 ETQFKVSPEQIRQAITPK---TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL-----WVLSDEIYEKILYDDAQHLS 217 (388)
T ss_dssp GGTTCCCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCBCTTCCCCC
T ss_pred ccCCCCCHHHHHHhcCcC---ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEEccchhcccCCCCCCC
Confidence 5679999999998654 3477788899999998 459999999999999 99999999876543221111
Q ss_pred CCCCc---ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 291 KVSFK---KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 291 ~~~~~---~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
...+. ...|+++.++||+++ .++++|++++++++++.+.....+. ..+ ...+.+++++..+ +.+
T Consensus 218 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~---~~~~~~~a~~~~l~~~~~ 287 (388)
T 1j32_A 218 IGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS-------TSN---VCTFAQYGAIAAYENSQD 287 (388)
T ss_dssp GGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT-------TCS---CCHHHHHHHHHHHHSCSH
T ss_pred HHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhc-------ccC---CCHHHHHHHHHHHhCCcH
Confidence 12222 237899999999996 5577999999988765553211110 011 1234444444444 344
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeE-EEEecC----CcHHH----h--hceeecc-----cCCEEEEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSST-VVFERP----QDEEF----V--RRWQLAC-----QGNIAHVVV 427 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~i-v~f~~~----~~~~~----~--~~~~l~~-----~~~~lRv~~ 427 (476)
.+++..++..++++++.+.|++. ++. +..+..+. +.+..+ +..++ . +++.+.. ..+.+|+++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 366 (388)
T 1j32_A 288 CVQEMLAAFAERRRYMLDALNAMPGLE-CPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY 366 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCB-CCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCc-ccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEe
Confidence 57788889999999999999987 554 33444333 333332 22222 2 2444422 147899987
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. +|+++|+.+++.|+++.+++
T Consensus 367 ~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 367 A--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHHh
Confidence 5 79999999999999887654
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-26 Score=230.60 Aligned_cols=295 Identities=13% Similarity=0.051 Sum_probs=216.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCC--eEEE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRM--ECVK 210 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~--~v~~ 210 (476)
....++.+++++++++++|.+ ...++|+|||+|+..++..+ . +++.|++.+..|++. ...++..|+ +++.
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~-~--~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 104 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL-T--IDEDCLIIRNGWFSYRWTQILEKGKFAKSSTV 104 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH-C--TTCEEEEEECSHHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC-C--CCCeEEEEeCCchhHHHHHHHHHhCCCCceEE
Confidence 345688889999999999987 24888999999999876543 3 899999999999874 345566664 7788
Q ss_pred EeCCCC---------CccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecC
Q 011842 211 VDCLIS---------GEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGA 277 (476)
Q Consensus 211 v~~~~~---------g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a 277 (476)
++.+.. +.+|+++|+++|.+ +++ +|+++++.|++|.+.| +++|+++|++||+ ++|+|++
T Consensus 105 ~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~-----~li~D~~ 176 (379)
T 3ke3_A 105 LTAERTEDTEAPKPFAPVDIETAVAKIKEDKSA---IVYAPHVETSSGIILSEEYIKALSEAVHSVGG-----LLVIDCI 176 (379)
T ss_dssp EECEESSCCSSCCCEECCCHHHHHHHHHHHTCS---EEEEESEETTTTEECCHHHHHHHHHHHHHTTC-----EEEEECT
T ss_pred EeccccccccccCCCCCCCHHHHHHHHhhcCCc---EEEEEeecCCCceeCCHHHHHHHHHHHHHcCC-----EEEEEec
Confidence 876432 26899999999964 554 7888888999999999 9999999999999 9999999
Q ss_pred cccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC--CccccCC-------------CCCc
Q 011842 278 LFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS--NVEYLAS-------------RDAT 341 (476)
Q Consensus 278 ~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~--~~~yl~~-------------~~~~ 341 (476)
++ +..+ ++... .+|++++++|||+++|.++|++++++++++.+.. ...|... ....
T Consensus 177 ~~-g~~~-------~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 248 (379)
T 3ke3_A 177 AS-GCVW-------LDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHA 248 (379)
T ss_dssp TC-TTCC-------CCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCC
T ss_pred cc-CCcc-------ccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCC
Confidence 87 4333 33333 4899999999999999999999999987665532 1222110 0111
Q ss_pred ccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--ee-EEEEecCCcHH-----H-hh
Q 011842 342 IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--SS-TVVFERPQDEE-----F-VR 412 (476)
Q Consensus 342 ~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~-iv~f~~~~~~~-----~-~~ 412 (476)
+.++.+.....++.++++.+..+|++++.++..+++++|++.|++.|+..+.++. ++ ++.+..++... + .+
T Consensus 249 ~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~ 328 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEA 328 (379)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCcchHHHHHHHHC
Confidence 2234443444455567777666788999999999999999999999876654432 34 34444433211 1 12
Q ss_pred ceeecc----------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 413 RWQLAC----------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 413 ~~~l~~----------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++.+.. .++.+|++++.++|++|||+++++|+++.+++.
T Consensus 329 Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 329 GLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp TCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 333321 157899999999999999999999999887764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=233.21 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=212.9
Q ss_pred HHHHHHHHH-HHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEe--CCC
Q 011842 139 QFEVGVLDW-FARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVD--CLI 215 (476)
Q Consensus 139 ~le~~~~~~-la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~--~~~ 215 (476)
....+++++ +++++|.+ .+++|+|+|+|+..++.++.. |++.|++++++|+++..+++..|++++.+| .++
T Consensus 53 ~~~~~l~~~~la~~~~~~----~v~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 126 (371)
T 2e7j_A 53 PPIHDFIHNQLPKFLGCD----VARVTNGAREAKFAVMHSLAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP 126 (371)
T ss_dssp CCHHHHHHTHHHHHTTSS----EEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHcCCC----EEEEeCChHHHHHHHHHHHhC--CCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC
Confidence 455677788 88899986 499999999999999998854 899999999999999999999999999999 887
Q ss_pred CCccCHHHHHHHHHcCC--CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 216 SGEIDCADFKAKLLQNK--DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~--~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
++.+|+++|++++.+.. .++.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+ ++
T Consensus 127 ~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~-----~li~D~a~~~~~~~-------~~ 194 (371)
T 2e7j_A 127 DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV-----PLLVNGAYAIGRMP-------VS 194 (371)
T ss_dssp TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-----CEEEECTTTBTTBC-------CC
T ss_pred CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCC-----eEEEECccccCCCC-------CC
Confidence 89999999999997421 234588889999999999999999999999999 99999999876543 22
Q ss_pred Ccc-cccEEEEcCCCCCCCCCCceeEEeehhhhhh-hcCCcc-ccCCCCCcc-cCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINV-LSSNVE-YLASRDATI-MGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~-l~~~~~-yl~~~~~~~-~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
... .+|+++.|+||++++|.++|++++++++++. +..... +... ..+ .++.+......+.++++.+.. +.
T Consensus 195 ~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~----~~ 268 (371)
T 2e7j_A 195 LKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKE--VELLGCTARGATIITLMASFPHVRE----RI 268 (371)
T ss_dssp HHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSB--GGGTTCCCCSHHHHHHHHHHHHHHH----HG
T ss_pred hhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccc--cccccCCcCHHHHHHHHHHHHHHHH----HH
Confidence 222 3789999999999989999999999887665 532211 1110 000 233332323333344444321 56
Q ss_pred HHHH--HHHHHHHHHHHHhcCCeEeecC--CeeEEEEecCCcHHHhhce-----ee-c----c---c--CCEEE-EEEcC
Q 011842 370 VQKC--LRNAHYLKDRLLDAGISAMLNE--LSSTVVFERPQDEEFVRRW-----QL-A----C---Q--GNIAH-VVVMP 429 (476)
Q Consensus 370 ~~~~--~~~a~~l~~~L~~~g~~~~~~~--~~~iv~f~~~~~~~~~~~~-----~l-~----~---~--~~~lR-v~~~~ 429 (476)
.++. .++++++.+.|++.++....++ ..+++.+..++..++.+.+ .+ + . . .+.+| ++++.
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~ 348 (371)
T 2e7j_A 269 KRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLST 348 (371)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeec
Confidence 6677 8899999999998876554433 3567777765222332221 11 1 0 1 46789 99998
Q ss_pred C-CCHHHHHHHHHHHHHHHHH
Q 011842 430 N-VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 430 ~-~T~edid~~~~~l~~~~~~ 449 (476)
. +|++++++++++|+++.++
T Consensus 349 ~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 349 YGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 8 9999999999999988754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=230.02 Aligned_cols=290 Identities=13% Similarity=0.091 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
....++++.+++++|.+++ .+++|+|||+|+..++.+++ ..+++.|+++.++|.++.. .++..|++++.+|.+
T Consensus 59 ~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 135 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 135 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGG--GEEEESSHHHHHHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCG
T ss_pred HHHHHHHHHHHHHcCCCHH--HEEEeCChHHHHHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCC
Confidence 4566777888888998643 59999999999999988873 1388999999999998654 357789999999987
Q ss_pred --CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH----HhCCCCCceEEEEecCccccccccccc
Q 011842 215 --ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE----ESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 215 --~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~----~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.++.+|+++|+++|.++ +.+|++++++|++|.+.|+++|.++|+ +||+ ++++|++|+.+..+
T Consensus 136 ~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~-----~li~Dea~~~g~~~---- 203 (390)
T 1elu_A 136 ATLNQGDAAAVLANHLGPK---TRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPV-----RVLVDGAQSAGSLP---- 203 (390)
T ss_dssp GGSSSSCHHHHHHTTCCTT---EEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCC-----EEEEECTTTBTTBC----
T ss_pred CCCCccchHHHHHHhcCCC---ceEEEEeccccCCceecCHHHHHHHHhhhhhhcCc-----EEEEEcccccCCcC----
Confidence 57889999999988654 458888999999999999999999999 9999 99999999854332
Q ss_pred CCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-c------------ccCCC-CCcc-cCCCCChhHH
Q 011842 289 APKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-E------------YLASR-DATI-MGSRNGHAPI 352 (476)
Q Consensus 289 ~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~------------yl~~~-~~~~-~~sr~~~~~l 352 (476)
++... .+|+++.|+|||+++|+++|++++++++++.+.... . |.... ...+ .++.+.....
T Consensus 204 ---~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (390)
T 1elu_A 204 ---LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYA 280 (390)
T ss_dssp ---CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHH
T ss_pred ---CChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHH
Confidence 22222 379999999999999999999999988766553211 0 00000 0011 2333323334
Q ss_pred HHHHHHHHhChhc-HHHHHHHHHHHHHHHHHHHHhc-CCeEeec--CCeeEEEEecCC---cHHHhh-----ceeeccc-
Q 011842 353 FLWYTLNRKGYKG-FQKEVQKCLRNAHYLKDRLLDA-GISAMLN--ELSSTVVFERPQ---DEEFVR-----RWQLACQ- 419 (476)
Q Consensus 353 ~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~--~~~~iv~f~~~~---~~~~~~-----~~~l~~~- 419 (476)
.+.++++.+...+ +++..++..++++++.+.|++. |+....+ ...+++.|..+. ..++.+ ++.+...
T Consensus 281 a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~ 360 (390)
T 1elu_A 281 GLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA 360 (390)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC
Confidence 4556666654445 8889999999999999999997 5443332 245677777642 233322 2333222
Q ss_pred -CCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 420 -GNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 420 -~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.+.+|++++..+|++++++++++|+++
T Consensus 361 ~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 361 DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999998653
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=232.02 Aligned_cols=294 Identities=15% Similarity=0.125 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCC-------------cEEEecCCCchH
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPD-------------GILYASRESHYS 196 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~-------------~~Vl~s~~~H~S 196 (476)
...++..++++++++++|.+++ .+++|+|+|+|+..++.++.+. .|| +.|+++..+|.|
T Consensus 58 ~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s 135 (432)
T 3a9z_A 58 KAKDIINTARASLAKMIGGKPQ--DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS 135 (432)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG--GEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcC--eEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh
Confidence 3457778899999999998643 5999999999999998887520 155 578888999999
Q ss_pred HHHHH----HHcCCeEEEEeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC-------
Q 011842 197 VFKAA----RMYRMECVKVDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG------- 264 (476)
Q Consensus 197 ~~~~~----~~~G~~v~~v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g------- 264 (476)
+.... +..|++++.+|+++ ++.+|+++|++++.++ +.+|++++++|++|.+.|+++|.++|++||
T Consensus 136 ~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~---~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~ 212 (432)
T 3a9z_A 136 IRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT---TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASG 212 (432)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT---EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC---ceEEEEECcccCcccccCHHHHHHHHHhcCccccccc
Confidence 86554 34689999999975 7889999999988654 458889999999999999999999999999
Q ss_pred ---CCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCC-
Q 011842 265 ---FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASR- 338 (476)
Q Consensus 265 ---~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~- 338 (476)
+ |+|+|++|+.+..+ ++... .+|+++.|+|||++ |. +|+++++++. ...+. ..|....
T Consensus 213 ~~~~-----~livDea~~~~~~~-------~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~~~--~~~~~~~~ 276 (432)
T 3a9z_A 213 LPRV-----LVHTDAAQALGKRR-------VDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTPLY--PMLFGGGQ 276 (432)
T ss_dssp CCCC-----EEEEECTTTTTTSC-------CCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBCCC--CSCCSSCG
T ss_pred CCce-----EEEEEchhhhCCcc-------cChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccCCcC--ceeecCCc
Confidence 9 99999999754332 23222 37999999999986 55 9999998764 22221 1121111
Q ss_pred -CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEee-cC-----C-eeEEEEecCC---
Q 011842 339 -DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAML-NE-----L-SSTVVFERPQ--- 406 (476)
Q Consensus 339 -~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~-~~-----~-~~iv~f~~~~--- 406 (476)
.....++.+......+.++++.+ .+++++..++..++++++.+.|++. |+.... .+ . ..++.|..++
T Consensus 277 ~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
T 3a9z_A 277 ERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL 355 (432)
T ss_dssp GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC
T ss_pred cccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC
Confidence 00112333322223344455544 3467888999999999999999884 543321 22 1 2355555432
Q ss_pred -cHHHhhc---eeec----c---------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 407 -DEEFVRR---WQLA----C---------------------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 407 -~~~~~~~---~~l~----~---------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
...+.+. +.+. + ..+.+|++++..+|++|+++++++|+++.+++.
T Consensus 356 ~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 356 RGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp CHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 2233221 1110 0 126899999999999999999999999887653
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=233.91 Aligned_cols=294 Identities=14% Similarity=0.070 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCc-EEEecCCCchHHHHHHHH---cCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDG-ILYASRESHYSVFKAARM---YRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~-~Vl~s~~~H~S~~~~~~~---~G~~v~ 209 (476)
...++.+++++++++++|.+++ .+++|+|||+|+..++.+++.. .|++ .|+++..+|+++...+.. .|++++
T Consensus 60 ~~~~~~~~l~~~la~~~~~~~~--~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 137 (400)
T 3vax_A 60 RAKRGVERAREYLASTVSAEPD--ELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVD 137 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGG--GEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--cEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEE
Confidence 3457788899999999999743 5999999999999999887611 2889 999999999998776665 499999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|.++++.+|+++|+++|.+++ .+|++++++|++|.+.|+++|.++|++||+ ++++|++|+.+..+.
T Consensus 138 ~v~~~~~~~~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~la~~~~~-----~li~D~a~~~~~~~~---- 205 (400)
T 3vax_A 138 FLTPGPSGRISVEGVMERLRPDT---LLVSLMHVNNETGVIQPVAELAQQLRATPT-----YLHVDAAQGYGKVPG---- 205 (400)
T ss_dssp EECCCTTCCCCHHHHHTTCCTTE---EEEECCSBCTTTCBBCCHHHHHHHHTTSSC-----EEEEECTTTTTTSGG----
T ss_pred EEccCCCCCcCHHHHHHhcCCCc---eEEEEECCCCCceeeCcHHHHHHHHHhcCC-----EEEEEhhhhcCCCCc----
Confidence 99999899999999999987544 488888999999999999999999999999 999999998654431
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEE-eehhhhhhh-cCCccccCCCC--Ccc-cCCCCChhHHHHHHHHHHhChh
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQI-TRMEHINVL-SSNVEYLASRD--ATI-MGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~-~~~~~~~~l-~~~~~yl~~~~--~~~-~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
+....+|+++.++||+++ |.++|+++ ++++.+... .....++.... ..+ .++.+......+.++++.+ .+
T Consensus 206 ---~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-~~ 280 (400)
T 3vax_A 206 ---DLTTPIDMISISGHKIGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIF-EA 280 (400)
T ss_dssp ---GGGSCCSEEEEETGGGTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHH-HH
T ss_pred ---ChhhcCcEEEEeHHHhCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHH-Hh
Confidence 111117899999999654 78899999 887321100 00011111100 011 2222222222333444433 34
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC--cHHHhh----ceeeccc----------------
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ--DEEFVR----RWQLACQ---------------- 419 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~--~~~~~~----~~~l~~~---------------- 419 (476)
++++..++..++++++.+.|+..++....++. .+++.|..++ ..++.+ ++.+...
T Consensus 281 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~ 360 (400)
T 3vax_A 281 EHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRA 360 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHHHHHTTTTEEEEEEECCHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhcCcEEEecccccCCCCCccHHHHH
Confidence 67889999999999999999833444333332 2577776653 222222 2222110
Q ss_pred --------CCEEEEEE-cCCCCHHHHHHHHHHHHHHHH
Q 011842 420 --------GNIAHVVV-MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 420 --------~~~lRv~~-~~~~T~edid~~~~~l~~~~~ 448 (476)
.+.+|+++ +..+|+++|++++++|+++.+
T Consensus 361 ~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 361 MGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp TTCCHHHHTSEEEEEEEEC-------------------
T ss_pred cCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 37899999 999999999999999988764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-25 Score=227.29 Aligned_cols=287 Identities=12% Similarity=0.069 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh----CCCc-EEEecCCCchHHHHHH----HHc--CCe
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV----FPDG-ILYASRESHYSVFKAA----RMY--RME 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~----~p~~-~Vl~s~~~H~S~~~~~----~~~--G~~ 207 (476)
+...++++++++++|.+++ .+++|+|+|+++..++.+++.. .|++ +|+++...|.++..+. +.. |++
T Consensus 71 ~~~~~l~~~la~~~g~~~~--~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDG--EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYT 148 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTT--SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHcCCCcc--cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence 5566788889999998643 4889999999998888877532 3776 5778888998866543 334 999
Q ss_pred EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 208 CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 208 v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++.+|. +++|+++|.++ +.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+..+
T Consensus 149 ~~~v~~-------~~~l~~~i~~~---~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~a~~~g~~~--- 210 (416)
T 1qz9_A 149 LRLVDS-------PEELPQAIDQD---TAVVMLTHVNYKTGYMHDMQALTALSHECGA-----LAIWDLAHSAGAVP--- 210 (416)
T ss_dssp EEEESS-------GGGHHHHCSTT---EEEEEEESBCTTTCBBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSC---
T ss_pred EEEeCc-------HHHHHHHhCCC---ceEEEEeccccCcccccCHHHHHHHHHHcCC-----EEEEEccccccCcC---
Confidence 998886 67888888643 4588899999999999999999999999999 99999999854332
Q ss_pred cCCCCCCcc-cccEEEEcCCCCCCCCCCc-eeEEeehhhhhhhcCC-ccccCCC-------C-------Ccc-cCCCCCh
Q 011842 288 KAPKVSFKK-PIGSVSVSGHKFVGCPMPC-GVQITRMEHINVLSSN-VEYLASR-------D-------ATI-MGSRNGH 349 (476)
Q Consensus 288 ~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~-G~l~~~~~~~~~l~~~-~~yl~~~-------~-------~~~-~~sr~~~ 349 (476)
+++.. .+|+++.|+||++++|+++ |++++++++++.+... ..|.... . ..+ .++.+..
T Consensus 211 ----~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (416)
T 1qz9_A 211 ----VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPIT 286 (416)
T ss_dssp ----CCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHH
T ss_pred ----CChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHH
Confidence 22222 3799999999999888888 9999998876554321 1111000 0 011 2333333
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecC----CeeEEEEecCCcHHHhh-----ceee
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNE----LSSTVVFERPQDEEFVR-----RWQL 416 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~----~~~iv~f~~~~~~~~~~-----~~~l 416 (476)
...++.++++.+..+++++..++..++++++.+.|++. |+....++ ..+++.|..++..++.+ ++.+
T Consensus 287 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~ 366 (416)
T 1qz9_A 287 SLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIG 366 (416)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEe
Confidence 34455667777666788999999999999999999986 66544332 25677777765443332 2222
Q ss_pred c-ccCCEEEEEEc-CCCCHHHHHHHHHHHHHHHHH
Q 011842 417 A-CQGNIAHVVVM-PNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 417 ~-~~~~~lRv~~~-~~~T~edid~~~~~l~~~~~~ 449 (476)
. ...+.+|+++. ..+|++||++++++|+++.++
T Consensus 367 ~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 367 DYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 2 24578999997 589999999999999988765
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=227.52 Aligned_cols=331 Identities=12% Similarity=0.039 Sum_probs=223.7
Q ss_pred cCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH
Q 011842 100 LGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR 179 (476)
Q Consensus 100 ~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~ 179 (476)
.|.|....++...+.+.+...+...+.... ++...+..++++++.+++.+.+|++.+...+++|+|||+|+..++.+++
T Consensus 41 ~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 119 (407)
T 2zc0_A 41 AGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI 119 (407)
T ss_dssp SCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc
Confidence 366665555545555544433332211111 1112245799999999998888965444569999999999999999886
Q ss_pred hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHH----cCCCCcEEE-EEeeCCCccccccCHH
Q 011842 180 EVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLL----QNKDKPAII-NVNIGTTVKGAVDDLD 254 (476)
Q Consensus 180 ~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~----~~~~~p~~v-v~t~gtt~tG~id~l~ 254 (476)
. +++.|+++.++|.++...++..|++++.+|+++++ +|+++|++++. +.. ++.+| ++++++|++|.+.|++
T Consensus 120 ~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~-~~~~v~~~~~~~nptG~~~~~~ 195 (407)
T 2zc0_A 120 D--PGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQ-KVKLIYTIPTGQNPMGVTMSME 195 (407)
T ss_dssp C--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTC-CEEEEEECCSSCTTTCCCCCHH
T ss_pred C--CCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccC-CceEEEECCCCCCCCCcCCCHH
Confidence 5 89999999999999999999999999999987665 99999999998 421 23354 5668899999998876
Q ss_pred ---HHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC
Q 011842 255 ---LVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS 330 (476)
Q Consensus 255 ---~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~ 330 (476)
+|+++|++||+ ++|+|++|+++.+......+...+.. ..+++..+++|+++.++++|++++++++++.+..
T Consensus 196 ~l~~i~~~~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~ 270 (407)
T 2zc0_A 196 RRKALLEIASKYDL-----LIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLM 270 (407)
T ss_dssp HHHHHHHHHHHHTC-----EEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----EEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCHHHHHHHHH
Confidence 99999999999 99999999876543211111111111 2346778889999976789999999877665532
Q ss_pred CccccCCCCCcccCCCCChhHHHHHHHHHHhC----h-hcHHHHHHHHHHHHHHHHHHHHhc--CCeEeecCCeeEEEEe
Q 011842 331 NVEYLASRDATIMGSRNGHAPIFLWYTLNRKG----Y-KGFQKEVQKCLRNAHYLKDRLLDA--GISAMLNELSSTVVFE 403 (476)
Q Consensus 331 ~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g----~-~g~~~~~~~~~~~a~~l~~~L~~~--g~~~~~~~~~~iv~f~ 403 (476)
..... ++ +.+ .+.++++...+. . ..+++..++..++++++.+.|++. ++....+...+++.+.
T Consensus 271 ~~~~~-----~~--~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 340 (407)
T 2zc0_A 271 QKQPI-----DF--CAP---AISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFF 340 (407)
T ss_dssp HHTTT-----TS--SSC---HHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEE
T ss_pred HHHhh-----cC--CCC---HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEE
Confidence 11110 11 111 233333333331 1 345567777888999999999874 4433333445566677
Q ss_pred cCC---cHHHh-----h-ceeecc---------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 404 RPQ---DEEFV-----R-RWQLAC---------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 404 ~~~---~~~~~-----~-~~~l~~---------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+. ..++. + ++.+.. ..+.+|+++... |+++|++++++|+++.+++.
T Consensus 341 ~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 341 LPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp CSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 653 22222 2 343321 246899988766 89999999999999887653
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=228.06 Aligned_cols=295 Identities=12% Similarity=0.055 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHcCCCC--CcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCc--hHHHHHHHHcCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELEN--NEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESH--YSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~--~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H--~S~~~~~~~~G~~v~~v~~ 213 (476)
....+++++++++++... +...+++|+|||+|+..++.++.. ..+++.|++.+..+ .++...++..|++++.+++
T Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (385)
T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRP 117 (385)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEec
Confidence 445567777788777641 124589999999999999988751 12888887765443 3445677888999999999
Q ss_pred -CCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccC
Q 011842 214 -LISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 214 -~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+.++.+|+++|+++|++ +++ +|++++++|++|.+.|+++|.++|++| |+ ++|+|++|+.+..+
T Consensus 118 ~~~~~~~d~~~l~~~l~~~~~~---~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~-----~li~D~a~~~~~~~----- 184 (385)
T 2bkw_A 118 LKIGESVPLELITEKLSQNSYG---AVTVTHVDTSTAVLSDLKAISQAIKQTSPET-----FFVVDAVCSIGCEE----- 184 (385)
T ss_dssp SSTTSCCCHHHHHHHHHHSCCS---EEEEESEETTTTEECCHHHHHHHHHHHCTTS-----EEEEECTTTTTTSC-----
T ss_pred CCCCCCCCHHHHHHHHhcCCCC---EEEEEccCCCcCeEcCHHHHHHHHHhhCCCC-----EEEEECccccCCcc-----
Confidence 88889999999999987 444 788889999999999999999999999 99 99999999854433
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhh-hhcC-----CccccCC-------------CCCcccCCCCCh
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHIN-VLSS-----NVEYLAS-------------RDATIMGSRNGH 349 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~-~l~~-----~~~yl~~-------------~~~~~~~sr~~~ 349 (476)
++... .+|+++.++|||+++|.|+|+++++++.++ .+.. ...|... ......++.+..
T Consensus 185 --~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (385)
T 2bkw_A 185 --FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQ 262 (385)
T ss_dssp --CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHH
T ss_pred --ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHH
Confidence 22222 379999999999998899999999988765 4420 1111100 000011233323
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHH-HhcCCeEeecC-----CeeEEEEecCCcHHHhh-----ceeecc
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL-LDAGISAMLNE-----LSSTVVFERPQDEEFVR-----RWQLAC 418 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L-~~~g~~~~~~~-----~~~iv~f~~~~~~~~~~-----~~~l~~ 418 (476)
..+.+.++++.+...+++++.++..++++++.+.| ++.|+....++ ..+++.|..++..++.+ ++.+..
T Consensus 263 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 342 (385)
T 2bkw_A 263 LINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAG 342 (385)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCCHHHHHHHHHHCCeEEeC
Confidence 33445556666544568888999999999999999 88876544322 35677777765433332 233321
Q ss_pred ------cCCEEEEE-EcC---CCCHHHHHHHHHHHHHHHH
Q 011842 419 ------QGNIAHVV-VMP---NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ------~~~~lRv~-~~~---~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|++ +.+ .+|++|+++++++|+++.+
T Consensus 343 g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 343 GIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp CCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred CCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence 24689998 553 4799999999999988754
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.7e-27 Score=236.98 Aligned_cols=289 Identities=13% Similarity=0.071 Sum_probs=209.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEE
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKV 211 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v 211 (476)
....++.+++++.+++++|.++ ++.++| |+|||+|+.+++..... +++.+++...+|++ +...++..| ++..+
T Consensus 68 ~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a~n~ai~~l~~--~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v 143 (386)
T 3qm2_A 68 KEFIQVAEEAEQDFRDLLNIPS-NYKVLFCHGGGRGQFAGVPLNLLG--DKTTADYVDAGYWAASAIKEAKKYC-APQII 143 (386)
T ss_dssp -----CCHHHHHHHHHHHTCCT-TEEEEEEESCTTHHHHHHHHHHCT--TCCEEEEEESSHHHHHHHHHHTTTS-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHHHHHHHHhccC--CCCeEEEEeCCHHHHHHHHHHHHhC-CeEEE
Confidence 3455777789999999999963 345888 68999999999887754 77776655555655 344556678 89999
Q ss_pred eCC--CCCc-cCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 212 DCL--ISGE-IDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 212 ~~~--~~g~-~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
+.+ ++|. +|+++++++|.++++ +|.+++.+|.+|.+ .|+++|. +|+ ++|||++++.+..|
T Consensus 144 ~~~~~~~G~~~~~~~~~~~l~~~t~---lV~~~h~et~tG~~i~pi~~i~-----~g~-----~~~vDa~qs~g~~p--- 207 (386)
T 3qm2_A 144 DAKITVDGKRAVKPMREWQLSDNAA---YLHYCPNETIDGIAIDETPDFG-----PEV-----VVTADFSSTILSAP--- 207 (386)
T ss_dssp ECEEEETTEEEECCGGGCCCCTTCS---CEEECSEETTTTEECCCCCCCC-----TTC-----CEEEECTTTTTSSC---
T ss_pred ecCcccCCCCCCchHHHhhcCCCCc---EEEEECCcCCcCEecCchhhhc-----CCC-----EEEEEcccccCCCC---
Confidence 988 5775 888888887776665 78888999999996 9999886 799 99999999988777
Q ss_pred cCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCC----CCCcccCCCCChhHHHHHHHHHHhC
Q 011842 288 KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLAS----RDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 288 ~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
+++.+ .|.+++++|||++ |.|+|++++++++++.+.. .+.++.. ......+|.+....+.+..+++.+.
T Consensus 208 ----idv~~-~~~~~~s~hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~ 281 (386)
T 3qm2_A 208 ----LDVSR-YGVIYAGAQKNIG-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLK 281 (386)
T ss_dssp ----CCGGG-CSEEEEETTTTTC-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHH
T ss_pred ----CCccc-cCEEEEecccccC-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 55544 3567899999996 9999999999987654432 2223210 1111235666666777888888887
Q ss_pred hh-cHHHHHHHHHHHHHHHHHHHHhcCCeEee-cC--Ce-eEEEEecCC---cHHHhh-----ceeeccc---CCEEEEE
Q 011842 363 YK-GFQKEVQKCLRNAHYLKDRLLDAGISAML-NE--LS-STVVFERPQ---DEEFVR-----RWQLACQ---GNIAHVV 426 (476)
Q Consensus 363 ~~-g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~--~~-~iv~f~~~~---~~~~~~-----~~~l~~~---~~~lRv~ 426 (476)
.. |++++.++..+++++|++.|++.++.... .+ .+ .+++|..++ +..+.. ++.+... .+.+|++
T Consensus 282 ~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS 361 (386)
T 3qm2_A 282 AQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRAS 361 (386)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEE
Confidence 77 89999999999999999999998864332 22 23 578888774 223322 2222111 1459999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++.++|++|||+|+++|+++.++
T Consensus 362 ~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 362 IYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=223.85 Aligned_cols=293 Identities=11% Similarity=0.070 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-IS 216 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~ 216 (476)
.++++++++++++.+|.+.+...+++|+|+|+|+..++.++.. +++.|+++.++|.++...++..|++++.+|++ .+
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 142 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTS--PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYEN 142 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSC--TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEET
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCC--CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecC
Confidence 5899999999999999654455799999999999999988865 89999999999999999999999999999985 23
Q ss_pred --CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 217 --GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 217 --g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+|+++|++++.+. ++.+|++++++|++|.+ +++++|+++|++||+ ++|+|++|+++........+.
T Consensus 143 ~~~~~d~~~l~~~l~~~--~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g~~~~~~ 215 (391)
T 3dzz_A 143 SKYSVNWADLEEKLATP--SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQV-----LLISDEIHGDLVLTDEDITPA 215 (391)
T ss_dssp TEEECCHHHHHHHHTST--TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCSSCCCCCG
T ss_pred CceeecHHHHHHHHhcc--CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCC-----EEEEecccccccCCCCCceeh
Confidence 349999999999732 23477888999999999 889999999999999 999999998765532222211
Q ss_pred CCCcc-ccc--EEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 292 VSFKK-PIG--SVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 292 ~~~~~-~~D--si~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
..... ..| +++.++||+++ .++++|+++++ +++.+.+........ ..+.+......+..++.. +.+.+
T Consensus 216 ~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~l~~-~~~~~ 288 (391)
T 3dzz_A 216 FTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAG------IGEPNLLAIPAAIAAYEE-GHDWL 288 (391)
T ss_dssp GGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHT------CSSCCTTHHHHHHHHHHH-CHHHH
T ss_pred hhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHHhhc------cCCCCHHHHHHHHHHHhc-cHHHH
Confidence 22221 145 88999999986 77899999998 556554432111100 111222223333344443 34557
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c-CCeEeecCCe-eEEEEecC----CcHHHh------hceeecc-------cCCEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLD-A-GISAMLNELS-STVVFERP----QDEEFV------RRWQLAC-------QGNIAHVV 426 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~-~-g~~~~~~~~~-~iv~f~~~----~~~~~~------~~~~l~~-------~~~~lRv~ 426 (476)
++..++..++++++.+.|++ . ++. +..+.. .++++..+ ...++. ++..+.. ..+.+|++
T Consensus 289 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis 367 (391)
T 3dzz_A 289 RELKQVLRDNFAYAREFLAKEVPEVK-VLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRIN 367 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcE-EeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEE
Confidence 88888999999999999998 4 554 444443 34445443 222222 2333321 13789998
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++ +++++|+.+++.|.++.++
T Consensus 368 ~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 368 LA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp CC--SCHHHHHHHHHHHHHHHHT
T ss_pred ec--CCHHHHHHHHHHHHHHHHH
Confidence 87 7999999999999988764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=228.10 Aligned_cols=293 Identities=9% Similarity=-0.047 Sum_probs=215.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC- 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~- 213 (476)
+..++++++.+++++++|.+.++ ..+++|+|||+|+..++.++.. +++.|+++.++|.++..+++..|++++.+|+
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVA--RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLD 156 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCC--CCCEEEEcCCcccchHHHHHHcCCEEEEeecc
Confidence 34689999999999999986422 3599999999999999887754 8999999999999999999999999999998
Q ss_pred -----CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 214 -----LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 214 -----~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+.++.+|+++|++++.++++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+++.+..
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~~~~---~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~Dea~~~~~~~g 228 (407)
T 3nra_A 157 YVSADETRAGLDLTGLEEAFKAGAR---VFLFSNPNNPAGVVYSAEEIGQIAALAARYGA-----TVIADQLYSRLRYAG 228 (407)
T ss_dssp CCSSCCSSCCBCHHHHHHHHHTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTSBCTT
T ss_pred cccccCcCCCcCHHHHHHHHhhCCc---EEEEcCCCCCCCcccCHHHHHHHHHHHHHcCC-----EEEEEccccccccCC
Confidence 36788999999999987554 7778899999999988 9999999999999 999999998765532
Q ss_pred cccCCCCCC---cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 286 VKKAPKVSF---KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 286 ~~~~~~~~~---~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
....+.... ....++++.+++|+++ .++++|+++.++++++.+.....+. ..+. ..+.++++...+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~---~~~~~~a~~~~l 298 (407)
T 3nra_A 229 ASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIV-------SLRA---AGYSQAVLRGWF 298 (407)
T ss_dssp CCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHH-------TSSS---CHHHHGGGGGTT
T ss_pred CCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhh-------ccCC---ChHHHHHHHHHH
Confidence 211111111 1235688899999997 6789999999887765553221111 1111 134444444444
Q ss_pred C--hhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC----cHHH----hh--ceeecc-------cCC
Q 011842 362 G--YKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ----DEEF----VR--RWQLAC-------QGN 421 (476)
Q Consensus 362 g--~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~----~~~~----~~--~~~l~~-------~~~ 421 (476)
. ...+++.+++..+++++|.+.|++. ++....+...+.+.+..+. ..++ .+ ++.+.. ..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 378 (407)
T 3nra_A 299 DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTAD 378 (407)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTT
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 2 2457888889999999999999987 4443333444555555443 1222 11 343321 247
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+|++++ +|+++|+.+++.|+++.+++
T Consensus 379 ~iRis~~--~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 379 SVRLNFS--QDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 8999887 49999999999999988764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-25 Score=226.12 Aligned_cols=293 Identities=12% Similarity=0.021 Sum_probs=213.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc--EEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG--ILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~--~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
..++++++.+++.+.+|.+.+...+++|+|+|+|+..++.++....+++ .|+++.++|.++...++..|++++.+|++
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~ 163 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF 163 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec
Confidence 4699999999999988877555679999999999999998886112888 99999999999999999999999999996
Q ss_pred C-CCccCHHHHHHHH-HcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 I-SGEIDCADFKAKL-LQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l-~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+ ++.+|+++|++++ ..+++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+......
T Consensus 164 ~~~~~~d~~~l~~~l~~~~~~---~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~-----~li~De~~~~~~~~~~~~~ 235 (437)
T 3g0t_A 164 EYRGEKLREKLESYLQTGQFC---SIIYSNPNNPTWQCMTDEELRIIGELATKHDV-----IVIEDLAYFGMDFRKDYSH 235 (437)
T ss_dssp GGCTTHHHHHHHHHHTTTCCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCCTTSCCCS
T ss_pred CCCCccCHHHHHHHHhcCCce---EEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-----EEEEEcchhhcccCCCcCc
Confidence 4 4579999999999 44444 7778889999999976 7788999999999 9999999987654311111
Q ss_pred ---CC--CCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhh-h-----------------hcCCccccCCCCCccc
Q 011842 290 ---PK--VSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHIN-V-----------------LSSNVEYLASRDATIM 343 (476)
Q Consensus 290 ---~~--~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~-~-----------------l~~~~~yl~~~~~~~~ 343 (476)
+. ..+. ...++++.++||+++ .++++|++++++++++ . +.....+ ..
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 308 (437)
T 3g0t_A 236 PGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA-------LS 308 (437)
T ss_dssp TTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-------HH
T ss_pred ccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhh-------hc
Confidence 00 1221 235688899999997 7788999999988766 5 2211100 01
Q ss_pred CCCCChhHHHHHHHHHHhChh--c---HHHHHHHHHHHHHHHHHHHHhcCCeEe------ec-CCeeEEEEecC--CcHH
Q 011842 344 GSRNGHAPIFLWYTLNRKGYK--G---FQKEVQKCLRNAHYLKDRLLDAGISAM------LN-ELSSTVVFERP--QDEE 409 (476)
Q Consensus 344 ~sr~~~~~l~~~~~l~~~g~~--g---~~~~~~~~~~~a~~l~~~L~~~g~~~~------~~-~~~~iv~f~~~--~~~~ 409 (476)
.+.+ .+.++++...+... . +++..++..++++++.+.|++.|+... .+ ...+++.+..+ +..+
T Consensus 309 ~~~~---~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (437)
T 3g0t_A 309 SGAT---HSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSK 385 (437)
T ss_dssp SSSC---HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHH
T ss_pred CCCC---HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHH
Confidence 1222 23344443333221 1 788899999999999999999976554 24 45566666655 2233
Q ss_pred Hh-----hceeeccc-------CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 410 FV-----RRWQLACQ-------GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 410 ~~-----~~~~l~~~-------~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+. +++.+... .+.+|++++ ..|+++|++++++|+++.+
T Consensus 386 l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 386 LIEKFVRYGMCAITLKTTGSKRNEAMRICTS-LLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp HHHHHHHTTEECEESTTTTCCCTTCEEEECS-SSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCeEEeeccccCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 32 23333211 167999988 4499999999999988764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=229.53 Aligned_cols=296 Identities=13% Similarity=0.042 Sum_probs=218.4
Q ss_pred CccchhhHHHHHHHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCe
Q 011842 131 SNYGVHSRQFEVGVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRME 207 (476)
Q Consensus 131 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~ 207 (476)
++.+....++.+++++.+++++|.++ ++.++| |+|||+|+..++.......+++.+++...+|++. .+.++..|+.
T Consensus 50 ~hr~~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~ 128 (377)
T 3e77_A 50 SHRSSDFAKIINNTENLVRELLAVPD-NYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTI 128 (377)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCc
Confidence 34444567888899999999999974 355888 5899999999988776534578888777788764 3455566877
Q ss_pred EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 208 CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 208 v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++.++.+.++..+++.++..+.++++ +|.+++.+|.+|.+.|+ +|+++|+ ++|||++++.+..|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~~~t~---lV~~~h~et~tG~~~pi-----i~~~~~~-----~~~vD~~q~~g~~~--- 192 (377)
T 3e77_A 129 NIVHPKLGSYTKIPDPSTWNLNPDAS---YVYYCANETVHGVEFDF-----IPDVKGA-----VLVCDMSSNFLSKP--- 192 (377)
T ss_dssp EECSCCCSSSCSCCCGGGCCCCTTCS---CEEEESEETTTTEECSS-----CCCCTTC-----CEEEECTTTTTSSC---
T ss_pred eEEeccCCCcCCCCChHHhccCCCcc---EEEEeCccCchheEchh-----hhccCCC-----EEEEEcccccCCCC---
Confidence 77788876677788777766665555 78888999999999998 4778999 99999999988777
Q ss_pred cCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhc-CCccccCC----CCCcccCCCCChhHHHHHHHHHHhC
Q 011842 288 KAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS-SNVEYLAS----RDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 288 ~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~-~~~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
+++.+ .|.+++++|||++ |.|+|++++|+++++.+. ..+.|+.. ......+|.+....+.+..+++++.
T Consensus 193 ----id~~~-~~~~~~s~~K~~g-p~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~ 266 (377)
T 3e77_A 193 ----VDVSK-FGVIFAGAQKNVG-SAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIK 266 (377)
T ss_dssp ----CCGGG-CSEEEEEGGGTTS-CTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred ----Cchhh-cCEEEEecccccC-CCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHH
Confidence 55543 3568899999996 999999999998765443 22334320 1122345666556677778888887
Q ss_pred hh-cHHHHHHHHHHHHHHHHHHHHhc-CCeEee-cC--Ce-eEEEEecCC---cH----HHhh-----ceeeccc---CC
Q 011842 363 YK-GFQKEVQKCLRNAHYLKDRLLDA-GISAML-NE--LS-STVVFERPQ---DE----EFVR-----RWQLACQ---GN 421 (476)
Q Consensus 363 ~~-g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~-~~--~~-~iv~f~~~~---~~----~~~~-----~~~l~~~---~~ 421 (476)
.. |++++.++..+++++|++.|++. |+.... .+ .+ .+++|..++ +. .+.. ++.+... .+
T Consensus 267 ~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g 346 (377)
T 3e77_A 267 NNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVG 346 (377)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTC
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCC
Confidence 77 89999999999999999999998 554322 11 23 368888774 11 2322 2222111 25
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+|++++.++|++|||+|+++|+++.++
T Consensus 347 ~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 347 GIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=222.44 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.++.+++++++++++|.+ .+++|+|||+|+..++.++.. |++.|+++.++|.++..+++..|++++.+|+
T Consensus 87 ~~~~~~l~~~la~~~g~~----~v~~~~ggt~a~~~~~~~~~~--~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~---- 156 (398)
T 3a2b_A 87 LDIHVELEEKLSAYVGKE----AAILFSTGFQSNLGPLSCLMG--RNDYILLDERDHASIIDGSRLSFSKVIKYGH---- 156 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHSSC--TTCEEEEETTCCHHHHHHHHHSSSEEEEECT----
T ss_pred cHHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhC--CCCEEEECCccCHHHHHHHHHcCCceEEeCC----
Confidence 377888999999999974 399999999999999988765 8999999999999999999999999999986
Q ss_pred ccCHHHHHHHHHcCCC-CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccC-CCCCC
Q 011842 218 EIDCADFKAKLLQNKD-KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKA-PKVSF 294 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~-~~~~~ 294 (476)
+|+++|++++.+... ++.+|+++++.+++|.+.|+++|.++|++||+ ++++|++|+.+.+.. .... ..+..
T Consensus 157 -~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~~ 230 (398)
T 3a2b_A 157 -NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDA-----AVMVDDAHSLGVIGHKGAGTASHFGL 230 (398)
T ss_dssp -TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSSGGGCCHHHHHTC
T ss_pred -CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCc-----EEEEECCCcccccCCCCCchHhhcCC
Confidence 489999999987422 45688888899999999999999999999999 999999997654311 1110 00111
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHH-HHHHHHHHhChhcHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPI-FLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l-~~~~~l~~~g~~g~~~~~~~ 372 (476)
.+.+|+++.++||+++ |.| |++++++++++.+... ..|... ++. ..... .+..+++.+ +.+++..++
T Consensus 231 ~~~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~~~~~------~~~-~~~~~a~~~~~l~~~--~~~~~~~~~ 299 (398)
T 3a2b_A 231 NDDVDLIMGTFSKSLA-SLG-GFVAGDADVIDFLKHNARSVMFS------ASM-TPASVASTLKALEII--QNEPEHIEK 299 (398)
T ss_dssp GGGCSEEEEESSSTTC-SSC-EEEEECHHHHHHHHHHCHHHHSS------BCC-CHHHHHHHHHHHHHH--HHCTHHHHH
T ss_pred CcCCeEEEeccccccc-CCC-cEEEeCHHHHHHHHHhcccceec------CCC-CHHHHHHHHHHHHHH--hhCHHHHHH
Confidence 2247999999999998 556 9999988776655331 222211 111 11112 223444442 234577888
Q ss_pred HHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh-----hceeecc--------cCCEEEEEEcCCCCHHHH
Q 011842 373 CLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edi 436 (476)
..++++++.+.|++.|+... ++.++++.+..+.. .++. +++.+.. ..+.+|++++..+|++++
T Consensus 300 ~~~~~~~l~~~L~~~g~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i 378 (398)
T 3a2b_A 300 LWKNTDYAKAQLLDHGFDLG-ATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQI 378 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCBC-SCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcC-CCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHH
Confidence 88999999999999876543 44566777776642 2222 2333321 246899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRST 449 (476)
Q Consensus 437 d~~~~~l~~~~~~ 449 (476)
++++++|+++.++
T Consensus 379 ~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 379 DEAIEKMVKVFKQ 391 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-25 Score=222.99 Aligned_cols=292 Identities=10% Similarity=0.031 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCccc-EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYW-GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~-g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+..+ +++|+||++|+..++.++.. |++.|++++++|.++..+++..|++++.+|.+
T Consensus 64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~ 141 (389)
T 1gd9_A 64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK--DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTY 141 (389)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCC--TTCEEEEEESCCTTHHHHHHHHTCEEEEEECC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccC
Confidence 4569999999999998896544456 99999999999999887754 88999999999999999999999999999987
Q ss_pred C--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 I--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+ ++.+|+++|++++.++ +.+|++++++|++|.+. ++++|+++|++||+ ++++|++|+++.+......
T Consensus 142 ~~~~~~~d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~~ 213 (389)
T 1gd9_A 142 EEDEFRLNVDELKKYVTDK---TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDL-----IVISDEVYEHFIYDDARHY 213 (389)
T ss_dssp GGGTTCCCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCTTCCCC
T ss_pred CccCCCCCHHHHHHhcCcC---ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEehhhhhcccCCCCCC
Confidence 5 4578999999998654 34777789999999986 59999999999999 9999999987665321111
Q ss_pred CCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~ 364 (476)
+...+. ...|+++.++||+++ .++++|++++++++++.+.....+. ..+.+ .+.++++...+. ..
T Consensus 214 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~ 283 (389)
T 1gd9_A 214 SIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN-------ATCPV---TFIQYAAAKALKDERS 283 (389)
T ss_dssp CGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTT-------TCSCC---HHHHHHHHHHHTCHHH
T ss_pred CHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhh-------ccCCC---HHHHHHHHHHHhCCCc
Confidence 112221 237899999999997 5577999999987766553221111 11111 334444444432 23
Q ss_pred --cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC----CcHHH----h--hceeecc-------cCCEEEE
Q 011842 365 --GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP----QDEEF----V--RRWQLAC-------QGNIAHV 425 (476)
Q Consensus 365 --g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~----~~~~~----~--~~~~l~~-------~~~~lRv 425 (476)
.+++..++..++++++.+.|++.|+....++....+.+..+ +..++ . +++.+.. ..+.+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 363 (389)
T 1gd9_A 284 WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRI 363 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEE
Confidence 56778888899999999999998764433333334444543 22222 2 2333321 2468999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++.. ++++|+.+++.|.++.++
T Consensus 364 ~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 364 SYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp ECCS--CHHHHHHHHHHHHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHHHHHh
Confidence 9774 899999999999888654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=224.69 Aligned_cols=289 Identities=12% Similarity=0.093 Sum_probs=212.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+.+|++.+...+++|+|||+|+..++.++.. |++.|++++++|.++...++..|++++.+|.++
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 156 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFM 156 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCC
Confidence 457999999999999888753345699999999999999988754 899999999999999999999999999999874
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++++.++ +.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+.. ...+
T Consensus 157 ~~~~~~d~~~l~~~l~~~---~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~Dea~~~~~~~g-~~~~ 227 (389)
T 1o4s_A 157 SKNFQPSLEEVEGLLVGK---TKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF-----YIISDEVYDSLVYTD-EFTS 227 (389)
T ss_dssp GGTTCCCHHHHHHTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTSBCSS-CCCC
T ss_pred ccCCCCCHHHHHHhcccC---ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEEccccccccCC-CCCC
Confidence 4678999999998654 347778889999999966 9999999999999 999999998765532 1111
Q ss_pred CCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
...+. ...|+++.++||+++ .++++|++++++++++.+.....+. ..+ ...+.+++++..+.. +++
T Consensus 228 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~-------~~~---~~~~~~~a~~~~l~~-~~~ 296 (389)
T 1o4s_A 228 ILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHT-------TSC---INTVAQYAALKALEV-DNS 296 (389)
T ss_dssp HHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------TCS---CCHHHHHHHHHHTTC-CCH
T ss_pred HhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhc-------ccC---CCHHHHHHHHHHHhc-cHH
Confidence 11111 237899999999997 5667999999988765553221111 011 124555666666643 378
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHh------hceeecc-----cCCEEEEEEcCCCCHHH
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFV------RRWQLAC-----QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~------~~~~l~~-----~~~~lRv~~~~~~T~ed 435 (476)
+..++..++++++.+.|++.|+....+....++++..+ +..++. +++.+.. ..+.+|+++. +|+++
T Consensus 297 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~ 374 (389)
T 1o4s_A 297 YMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIER 374 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHH
Confidence 88889999999999999988765443333344555554 333222 2333321 1368999887 49999
Q ss_pred HHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRS 448 (476)
Q Consensus 436 id~~~~~l~~~~~ 448 (476)
|+.+++.|.++.+
T Consensus 375 l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 375 LTEALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=227.20 Aligned_cols=291 Identities=14% Similarity=0.111 Sum_probs=213.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+.+|.+.+...+++|+|||+|+..++.++.. +++.|++++++|.++..+++..|++++.+|.++
T Consensus 80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 157 (409)
T 2gb3_A 80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRM 157 (409)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCG
T ss_pred CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCC
Confidence 457999999999999888765556799999999999999988754 899999999999999999999999999999875
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+..+ +++|++++.++ +.+|++++++|++|.+. ++++|+++|++||+ ++++|++|+++.+.. ...+
T Consensus 158 ~~~~~~-~~~l~~~l~~~---~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~Dea~~~~~~~~-~~~~ 227 (409)
T 2gb3_A 158 EEGFAI-PQNLESFINER---TKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGL-----FLIVDEVYSEIVFRG-EFAS 227 (409)
T ss_dssp GGTSCC-CTTGGGGCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCSS-CCCC
T ss_pred CCCCcc-HHHHHHhhCcC---CeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCC-----EEEEECcccccccCC-CCCC
Confidence 3344 78888887653 44777888999999984 58999999999999 999999998765432 2211
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGF 366 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~ 366 (476)
.+......|+++.++||+++ .++++|++++++ ++++.+.....+. . +. ..+.++++...+ +...+
T Consensus 228 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~-------~-~~---~~~~~~a~~~~l~~~~~~~ 296 (409)
T 2gb3_A 228 ALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGR-------L-AP---PLLEQIGSVGLLNLDDSFF 296 (409)
T ss_dssp GGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS-------C-CC---CHHHHHHHHHHHTCCHHHH
T ss_pred ccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhcc-------C-CC---CHHHHHHHHHHHhccHHHH
Confidence 11111236899999999997 556799999998 7765553211111 0 11 234444444444 44567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecC--CcHH----Hhh-------ceeecc----------cCCE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERP--QDEE----FVR-------RWQLAC----------QGNI 422 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~--~~~~----~~~-------~~~l~~----------~~~~ 422 (476)
++..++..++++++.+.|++.|+.....+. ..++++..+ +..+ +.+ ++.+.. ..+.
T Consensus 297 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~ 376 (409)
T 2gb3_A 297 DFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKE 376 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCE
Confidence 788888999999999999988765413343 344444554 2222 222 333321 2468
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+|+++. +|+++|+++++.|+++.+++.
T Consensus 377 iRis~~--~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 377 IRIACV--LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp EEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 998877 899999999999999987764
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=225.22 Aligned_cols=344 Identities=15% Similarity=0.074 Sum_probs=224.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHhccc---ccccC--CCCcCCcchHHHHHHH--HHhhCCCCCCcccCccchhhHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERT---KHHLG--YPYNLDFDYGALAQLQ--HFSINNLGDPFIESNYGVHSRQFEVGVL 145 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~---~~~~g--~p~~~~~~~~~l~~~l--~~~~n~~g~~~~~~~~~~~~~~le~~~~ 145 (476)
++| .+.+..++++++......+. ..++| .|.. ..+..+.+++ ...+... .++. +....+..+++.+++
T Consensus 40 ~lp-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~--~~p~~v~~~~~~~~~~~~~-~~~~-~~~~~g~~~~~~~~~ 114 (438)
T 1wyu_A 40 DLP-EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRSH--HVPPVVQALAARGEFLTAY-TPYQ-PEVSQGVLQATFEYQ 114 (438)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCC--CCCHHHHHHHTSHHHHHCC-SCCS-GGGCHHHHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHHHHhcCcCccccccCCCccCC--cCcHHHHHHHhcchhhhcC-CCCc-chhhhhHHHHHHHHH
Confidence 466 67778899999887765432 12333 2221 1234444444 2222221 1111 112346778999999
Q ss_pred HHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCccCH
Q 011842 146 DWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 146 ~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~~D~ 221 (476)
+++++++|++. .++++|+|+|.++..++.+.+ ..++++|+++++.|.++...+ +..|++++.++. +++.+|+
T Consensus 115 ~~la~~~g~~~--~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~ 190 (438)
T 1wyu_A 115 TMIAELAGLEI--ANASMYDGATALAEGVLLALR-ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPL 190 (438)
T ss_dssp HHHHHHHTSSE--ECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCC
T ss_pred HHHHHHhCCCc--cceEEeCcHHHHHHHHHHHHh-cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCH
Confidence 99999999974 347899999943332222222 238899999999999987554 558999999997 5678887
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecC-cccccccccccCCCCCCcccccE
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGA-LFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a-~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
++ |.+ ++.+|+++++ |++|.+.|+++|+++|++||+ |+|+|.. ++.+... .....++|+
T Consensus 191 ~~----i~~---~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~-----~vivd~d~~a~g~~~-------~~~~~g~D~ 250 (438)
T 1wyu_A 191 PE----VGE---EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGA-----LFVAVADPLSLGVLK-------PPGAYGADI 250 (438)
T ss_dssp CC----CCT---TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTC-----EEEEECCTTGGGTBC-------CHHHHTCSE
T ss_pred HH----hCC---CeEEEEEECC-CCCeEEecHHHHHHHHHHcCC-----EEEEEechhhccCcC-------CCccCCCCE
Confidence 76 433 3458888888 999999999999999999999 9997744 3222211 111124899
Q ss_pred EEEcCCC-----CCCCCCCceeEEeehhhhhhhcCC-----------ccccCCC---C---CcccCCCCC---hhHHHHH
Q 011842 301 VSVSGHK-----FVGCPMPCGVQITRMEHINVLSSN-----------VEYLASR---D---ATIMGSRNG---HAPIFLW 355 (476)
Q Consensus 301 i~~s~hK-----~l~~p~~~G~l~~~~~~~~~l~~~-----------~~yl~~~---~---~~~~~sr~~---~~~l~~~ 355 (476)
+++|+|| |+++| ++|++++++++.+.+... ..|...- . ....++.+. ....+++
T Consensus 251 ~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 251 AVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHH
Confidence 9999888 66666 999999998876655221 0111000 0 000122221 2223333
Q ss_pred HH--HHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeec-CCeeEEEEecC-CcHHHh-----hceee--cc----c
Q 011842 356 YT--LNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLN-ELSSTVVFERP-QDEEFV-----RRWQL--AC----Q 419 (476)
Q Consensus 356 ~~--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~-~~~~iv~f~~~-~~~~~~-----~~~~l--~~----~ 419 (476)
++ +..++.++++++.++..++++++.+.|++. |+....+ +...++.|..+ +..++. +++.+ .. .
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~ 409 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYG 409 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSC
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHHHHHCCceeccccccccC
Confidence 33 777778889999999999999999999998 6654433 22344556554 223332 23444 21 2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.+.+|+++++.+|++||++++++|+++
T Consensus 410 ~~~lRis~~~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 410 ENLALFAATELHEEEDLLALREALKEV 436 (438)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEecccCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999875
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=223.67 Aligned_cols=289 Identities=14% Similarity=0.054 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|.+.+..++++|+||++|+..++.+..+ ||+.|+++.++|.++...++..|++++.+|+++
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 146 (385)
T 1b5p_A 69 GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLP 146 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCc
Confidence 457999999999999888764445799999999999999988765 899999999999999999999999999999974
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++++.+++ .+|++++++|+||.+.+ +++|+++|++||+ ++++|++|+.+.+.. ...+
T Consensus 147 ~~~~~~d~~~l~~~l~~~~---~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~-~~~~ 217 (385)
T 1b5p_A 147 EEGFVPDPERVRRAITPRT---KALVVNSPNNPTGAVYPKEVLEALARLAVEHDF-----YLVSDEIYEHLLYEG-EHFS 217 (385)
T ss_dssp GGTTCCCHHHHHTTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBSSS-CCCC
T ss_pred ccCCCCCHHHHHHhcCCCC---EEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCC-----EEEEEccchhcccCC-CCCC
Confidence 45799999999886543 47788899999999855 9999999999999 999999998765532 2111
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-----Chh
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-----GYK 364 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-----g~~ 364 (476)
..+.....+++..+++|+++ .++++|++++++++++.+.....+. ..+ ...+.++++...+ +.+
T Consensus 218 ~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~~-------~~~---~~~~~~~a~~~~l~~~~~~~~ 287 (385)
T 1b5p_A 218 PGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQS-------TTS---PDTIAQWATLEALTNQEASRA 287 (385)
T ss_dssp GGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTT-------TCS---CCHHHHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhhc-------cCC---CCHHHHHHHHHHHhCCCcchH
Confidence 11111134677889999986 5678999999887766553211111 001 1234444444433 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC----CcHHHhh-----ceeeccc-----CCEEEEEEcCC
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP----QDEEFVR-----RWQLACQ-----GNIAHVVVMPN 430 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~----~~~~~~~-----~~~l~~~-----~~~lRv~~~~~ 430 (476)
.+++..++..++++++.+.|++.|+....++....+.+..+ +..++.+ ++.+... .+.+|+++.
T Consensus 288 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~-- 365 (385)
T 1b5p_A 288 FVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA-- 365 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--
Confidence 46677788888999999999988764433333334444443 2233322 3333211 368999876
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENR 447 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~ 447 (476)
+++++|+..++.|.++.
T Consensus 366 ~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 366 TSEENLRKALERFARVL 382 (385)
T ss_dssp SCHHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78999999999887654
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=225.32 Aligned_cols=333 Identities=11% Similarity=0.037 Sum_probs=226.9
Q ss_pred ccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH
Q 011842 99 HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG 178 (476)
Q Consensus 99 ~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa 178 (476)
..|.|....++...+.+.+...+...+.....+....+..++++++.+++.+..|.+ +..++++|+|+++|+..++.++
T Consensus 82 ~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l 160 (448)
T 3aow_A 82 AGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVF 160 (448)
T ss_dssp CCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHH
Confidence 347777655555555544443332211001111112245789999999998888985 3446999999999999999888
Q ss_pred HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHH----cCCCCcEEE-EEeeCCCccccccC-
Q 011842 179 REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLL----QNKDKPAII-NVNIGTTVKGAVDD- 252 (476)
Q Consensus 179 ~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~----~~~~~p~~v-v~t~gtt~tG~id~- 252 (476)
.+ ||+.|++.+++|.++...++..|++++.+|++++| +|+++|+++|+ +. .++.+| +++++.|++|.+.+
T Consensus 161 ~~--~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~ 236 (448)
T 3aow_A 161 LN--PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQG-KKVKVVYTVPTFQNPAGVTMNE 236 (448)
T ss_dssp CC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCCCCH
T ss_pred cC--CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccC-CCCeEEEECCCCCCCcCCCCCH
Confidence 65 89999999999999999999999999999997665 99999999997 42 234455 56788999999866
Q ss_pred --HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhc
Q 011842 253 --LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS 329 (476)
Q Consensus 253 --l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~ 329 (476)
+++|+++|++||+ +|++|++|+.+.+......+...+.. ..+++..+++|+++.++++|++++++++++.+.
T Consensus 237 ~~l~~i~~la~~~~~-----~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~ 311 (448)
T 3aow_A 237 DRRKYLLELASEYDF-----IVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKME 311 (448)
T ss_dssp HHHHHHHHHHHHHTC-----EEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----EEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHH
Confidence 6799999999999 99999999876653221111112211 246778889999997788999999988766553
Q ss_pred CCccccCCCCCcccCCCCChhHHHHHHHHHHhCh----hcHHHHHHHHHHHHHHHHHHHHhc---CCeEeecCCeeEEEE
Q 011842 330 SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY----KGFQKEVQKCLRNAHYLKDRLLDA---GISAMLNELSSTVVF 402 (476)
Q Consensus 330 ~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~---g~~~~~~~~~~iv~f 402 (476)
....+. ..+.+ .+.++++...+.. +.+++..+++.++++++.+.|++. ++....+...+++.+
T Consensus 312 ~~~~~~-------~~~~~---~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v 381 (448)
T 3aow_A 312 IAKQST-------DLCTN---VFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWV 381 (448)
T ss_dssp HHHHHH-------HSSCC---HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEE
T ss_pred HHHHHh-------cCCCC---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEE
Confidence 221111 11111 3444444444322 235666677778999999999874 454333444566667
Q ss_pred ecCC---cHHHh-----hceeec----c-----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 403 ERPQ---DEEFV-----RRWQLA----C-----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 403 ~~~~---~~~~~-----~~~~l~----~-----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+. ..++. ++..+. . ..+.+|+++.. .|+++|+.+++.|.++.++..+
T Consensus 382 ~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~~ 447 (448)
T 3aow_A 382 TLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEELK 447 (448)
T ss_dssp ECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 7653 22332 233321 1 24689999875 4899999999999999887654
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-24 Score=213.27 Aligned_cols=282 Identities=13% Similarity=-0.009 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.++++++.+++.+.+|++.+...+++|+|+++++..++.++.. +++.|++++++|.++...++..|++++.+|.++++
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~ 149 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGG--PGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADF 149 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCS--TTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTS
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcC--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCC
Confidence 4899999999998877764445699999999999988888754 88999999999999999999999999999988777
Q ss_pred ccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 218 EIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 218 ~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
.+|+++|++++.+ +++ +|+++++++++|.+.|++++.++++.+++ ++++|++|+.+... .......+. .
T Consensus 150 ~~d~~~l~~~i~~~~~~---~v~~~~~~nptG~~~~~~~l~~l~~~~~~-----~li~De~~~~~~~~-~~~~~~~~~-~ 219 (369)
T 3cq5_A 150 RIDMDVALEEIRAKQPD---IVFVTTPNNPTGDVTSLDDVERIINVAPG-----IVIVDEAYAEFSPS-PSATTLLEK-Y 219 (369)
T ss_dssp SCCHHHHHHHHHHHCCS---EEEEESSCTTTCCCCCHHHHHHHHHHCSS-----EEEEECTTGGGCCS-CCGGGGTTT-C
T ss_pred CCCHHHHHHHhhccCCC---EEEEeCCCCCCCCCCCHHHHHHHHHhCCC-----EEEEECCchhhcCC-cchHHHHhh-C
Confidence 8999999999987 554 77778999999999999999999999999 99999999876532 110000111 1
Q ss_pred c-ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHH
Q 011842 297 P-IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKC 373 (476)
Q Consensus 297 ~-~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~ 373 (476)
. .++++.++||+++ .++++|++++++++++.+.....+ + +. ..+.++++...+. .+.+++..++.
T Consensus 220 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-------~--~~---~~~~~~a~~~~l~~~~~~~~~~~~~ 287 (369)
T 3cq5_A 220 PTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP-------Y--HL---SALSQAAAIVALRHSADTLGTVEKL 287 (369)
T ss_dssp TTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT-------T--CS---CHHHHHHHHHHHHTHHHHHTHHHHH
T ss_pred CCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC-------C--CC---CHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2 4588899999997 567899999998876665432211 1 11 2344444444442 23467778888
Q ss_pred HHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHh-----hceeeccc--CCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFV-----RRWQLACQ--GNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l~~~--~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
.++++++.+.|++.|+... ++..+++.+..+ +..++. +++.+... .+.+|+++. |++|+++++++|++
T Consensus 288 ~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~ 363 (369)
T 3cq5_A 288 SVERVRVAARLEELGYAVV-PSESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAE 363 (369)
T ss_dssp HHHHHHHHHHHHHHTCEEE-CCSSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEC-CCCCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHH
Confidence 8999999999998876544 555667777765 333332 23333322 468999886 89999999999988
Q ss_pred HH
Q 011842 446 NR 447 (476)
Q Consensus 446 ~~ 447 (476)
+.
T Consensus 364 ~~ 365 (369)
T 3cq5_A 364 II 365 (369)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=218.79 Aligned_cols=282 Identities=14% Similarity=0.049 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|.+.+...+++|+||++|+..++.++.. |++.|++++++|.++...++..|++++.+|
T Consensus 67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--- 141 (370)
T 2z61_A 67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIID--DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--- 141 (370)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEEC---
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeC---
Confidence 356999999999999888765556799999999999999988855 889999999999999999999999999888
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC-
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF- 294 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~- 294 (476)
+|+++|++++.++ +.+|+++++++++|.+.|++ |.++|++||+ ++++|++|+.+.+.. ...+...+
T Consensus 142 ---~d~~~l~~~l~~~---~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~-----~li~De~~~~~~~~g-~~~~~~~~~ 208 (370)
T 2z61_A 142 ---FTVESLEEALSDK---TKAIIINSPSNPLGEVIDRE-IYEFAYENIP-----YIISDEIYNGLVYEG-KCYSAIEFD 208 (370)
T ss_dssp ---SSHHHHHHHCCSS---EEEEEEESSCTTTCCCCCHH-HHHHHHHHCS-----EEEEECTTTTCBSSS-CCCCGGGTC
T ss_pred ---CCHHHHHHhcccC---ceEEEEcCCCCCcCcccCHH-HHHHHHHcCC-----EEEEEcchhhcccCC-CCcCHHHcc
Confidence 6999999998653 34777889999999999999 9999999999 999999998765532 11111222
Q ss_pred -cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---hhcHHHH
Q 011842 295 -KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---YKGFQKE 369 (476)
Q Consensus 295 -~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---~~g~~~~ 369 (476)
....|+++.++||+++ .++++|++++++++++.+....... .++. ..+.++++...+. .+.+++.
T Consensus 209 ~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~a~~~~l~~~~~~~~~~~ 278 (370)
T 2z61_A 209 ENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNL-------FISA---PTISQYAALKAFEKETEREINSM 278 (370)
T ss_dssp TTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------TSSS---CHHHHHHHGGGGSHHHHHHHHHH
T ss_pred CCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhc-------ccCC---CHHHHHHHHHHHhccCHHHHHHH
Confidence 1237899999999996 5677999999988766553211111 1111 2344445444442 3456777
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC-CcHHHh------hceeecc-------cCCEEEEEEcCCCCHHH
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP-QDEEFV------RRWQLAC-------QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~-~~~~~~------~~~~l~~-------~~~~lRv~~~~~~T~ed 435 (476)
.++..++++++.+.|++.|+....++...++.+..+ +..++. +++.+.. ..+.+|+++. +|+++
T Consensus 279 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~ 356 (370)
T 2z61_A 279 IKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYEN 356 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHH
Confidence 888899999999999988764433333333444554 332222 2333321 2468999888 79999
Q ss_pred HHHHHHHHHHHH
Q 011842 436 LDDFLNELIENR 447 (476)
Q Consensus 436 id~~~~~l~~~~ 447 (476)
|+.+++.|.++.
T Consensus 357 i~~~~~~l~~~l 368 (370)
T 2z61_A 357 IKEGLERIKEFL 368 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=227.24 Aligned_cols=299 Identities=12% Similarity=0.028 Sum_probs=212.5
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELE-NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~-~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|++ .+...+++|+|+++|+..++.+... |++.|+++.++|.++...++..|++++.+|++
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLE 163 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC
Confidence 34689999999998877854 3345699999999999999888765 88999999999999999999999999999987
Q ss_pred CCCccCHHHHHHHHHcC-----CCCcEEE-EEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 215 ISGEIDCADFKAKLLQN-----KDKPAII-NVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~-----~~~p~~v-v~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+++ +|+++|+++|++. ..++.+| +++++.|++|.+.| +++|+++|++||+ ++++|++|+.+.+..
T Consensus 164 ~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g 237 (425)
T 1vp4_A 164 DDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL-----FIVEDDPYGALRYEG 237 (425)
T ss_dssp TTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECSSTTCBCSS
T ss_pred CCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEECCCccccCCC
Confidence 665 9999999999761 1123465 56788999999865 6789999999999 999999998765432
Q ss_pred cccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--
Q 011842 286 VKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-- 362 (476)
Q Consensus 286 ~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-- 362 (476)
....+...+. ...+++..+++|+++.++++|++++++++++.+....... ..+.+ .+.++++...+.
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~---~~~~~a~~~~l~~~ 307 (425)
T 1vp4_A 238 ETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSA-------DLCSP---AITHRLAARYLERY 307 (425)
T ss_dssp CCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHH-------HSSCC---HHHHHHHHHHHHHS
T ss_pred CCCcCHHHhCCCCCEEEEeccccccccccceEEEeeCHHHHHHHHHHhhhh-------cCCCC---HHHHHHHHHHHhcC
Confidence 1111101111 1246778899999997778999999987766553211110 11111 344444444442
Q ss_pred --hhcHHHHHHHHHHHHHHHHHHHHhc-----CCeEeecCCeeEEEEecCC---cHHH-----hhceeec----c-----
Q 011842 363 --YKGFQKEVQKCLRNAHYLKDRLLDA-----GISAMLNELSSTVVFERPQ---DEEF-----VRRWQLA----C----- 418 (476)
Q Consensus 363 --~~g~~~~~~~~~~~a~~l~~~L~~~-----g~~~~~~~~~~iv~f~~~~---~~~~-----~~~~~l~----~----- 418 (476)
.+.+++..++..++++++.+.|++. ++....+..++++.+..+. ..++ .+++.+. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~ 387 (425)
T 1vp4_A 308 DLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDE 387 (425)
T ss_dssp CHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCC
Confidence 2345667777888999999999885 4543334445677777652 2222 1233332 1
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
..+.+|+++... |+++|+++++.|+++.+++.++
T Consensus 388 ~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 388 PSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp CCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhh
Confidence 246899998763 9999999999999998877654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-25 Score=218.92 Aligned_cols=293 Identities=15% Similarity=0.100 Sum_probs=205.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH--HHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--AARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~--~~~~~G~~v~~v~~~ 214 (476)
..++++++++++++++|.+++ .+++|+|||+|+..++.+++. +++.|++++++|.++.. .++..|++++.+|.+
T Consensus 47 ~~~~~~~~~~~l~~~~g~~~~--~v~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (359)
T 1svv_A 47 QDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLALR--PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP 122 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHHCC--TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT
T ss_pred ccHHHHHHHHHHHHHhCCCCc--cEEEeCCchHHHHHHHHHHhC--CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC
Confidence 348889999999999997653 499999999999999998865 89999999999999987 478889999999986
Q ss_pred CCCccCHHHHHHHHHcCC----CCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 215 ISGEIDCADFKAKLLQNK----DKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~----~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++.+|+++|+++++++. .++.+|+++++ |++|.+.| +++|.++|++||+ |+|+|++|.++......
T Consensus 123 -~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~~~ 195 (359)
T 1svv_A 123 -DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGL-----YLFLDGARLASALSSPV 195 (359)
T ss_dssp -TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTC-----EEEEECTTHHHHHTSTT
T ss_pred -CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCC-----EEEEEccchhhhhcCCC
Confidence 78899999999998751 13457778777 68999988 9999999999999 99999999443211111
Q ss_pred cCCC-CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 288 KAPK-VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 288 ~~~~-~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
.... +.....+|++++++||+++ |.++|++++++++++.+...... . ..... . +.....++ ...+...++
T Consensus 196 ~~~~~~~~~~~~d~~~~s~~K~g~-~~~~g~l~~~~~~~~~~~~~~~~-~--~~~~~--~-~~~~~~~~--~~~l~~~~~ 266 (359)
T 1svv_A 196 NDLTLADIARLTDMFYIGATKAGG-MFGEALIILNDALKPNARHLIKQ-R--GALMA--K-GWLLGIQF--EVLMKDNLF 266 (359)
T ss_dssp CCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEECSGGGCTTHHHHHHH-T--TCCCT--T-THHHHHHH--HHHTSTTHH
T ss_pred cchhhhhhhhcCCEEEEecccCCC-CCceEEEEEcccHHHHHHHHHhc-C--Ccccc--c-chhhHHHH--HHHHhhhhH
Confidence 0000 0001237999999999854 78899999988765544211000 0 00001 0 11112222 233444567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc--HHHhh--ceeec----ccCCEEEEEEcCCCCHHHHHH
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD--EEFVR--RWQLA----CQGNIAHVVVMPNVTIDKLDD 438 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~--~~~~~--~~~l~----~~~~~lRv~~~~~~T~edid~ 438 (476)
++..++..++++++.+.|+..++....++.++++++..+.. ..+.+ ++.+. ...+.+|++++..+|+++|++
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~ 346 (359)
T 1svv_A 267 FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHR 346 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHH
Confidence 88889999999999999954565444345556655554321 11222 23221 134689999888999999999
Q ss_pred HHHHHHHHHHH
Q 011842 439 FLNELIENRST 449 (476)
Q Consensus 439 ~~~~l~~~~~~ 449 (476)
++++|+++.++
T Consensus 347 ~~~~l~~~~~~ 357 (359)
T 1svv_A 347 FVEVLKRLVAS 357 (359)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhc
Confidence 99999887654
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=223.23 Aligned_cols=316 Identities=12% Similarity=0.014 Sum_probs=220.6
Q ss_pred CCcCCcchHHHHHHHHHhhC---CCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHH
Q 011842 103 PYNLDFDYGALAQLQHFSIN---NLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVG 178 (476)
Q Consensus 103 p~~~~~~~~~l~~~l~~~~n---~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa 178 (476)
|.....+...+..+.....+ |..+.+..++.+....++.+++++.+++++|.++ ++.++| |+|||+|+..++...
T Consensus 11 pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~-~~~v~f~t~~~T~a~n~~~~~~ 89 (361)
T 3m5u_A 11 AGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELND-DYEVLFLQGGASLQFAMIPMNL 89 (361)
T ss_dssp SSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCcHHHHHHHHHHhc
Confidence 44333344555555544432 2222222233344567888899999999999974 345887 999999999888776
Q ss_pred HhhCCCc---EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc--cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCH
Q 011842 179 REVFPDG---ILYASRESHYSVFKAARMYRMECVKVDCLISGE--IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL 253 (476)
Q Consensus 179 ~~~~p~~---~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~--~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l 253 (476)
. +++ .|+++..+|. +...++..|+++..++.++++. ++++. + |.++++ +|.+++.+|.+|.+.|.
T Consensus 90 ~---~~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~~~t~---lv~~~~~e~~tG~~~~~ 159 (361)
T 3m5u_A 90 A---LNGVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEESNFDHIPRV-E--FSDNAD---YAYICSNNTIYGTQYQN 159 (361)
T ss_dssp C---CSSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTTTTSCSCCCC-C--CCTTSS---EEEEESEETTTTEECSS
T ss_pred C---CCCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccCcCCCcCChh-h--cCCCCC---EEEEeCCCCCcceeCCc
Confidence 5 444 3555555554 3445566799999999987774 56766 3 766665 78888999999998552
Q ss_pred HHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC--C
Q 011842 254 DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS--N 331 (476)
Q Consensus 254 ~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~--~ 331 (476)
+++ +|+ ++|||++++.+..| +++.+ +|++++++|||++ |.|+|++++++++++.+.. .
T Consensus 160 -----i~~-~~~-----~~~vD~~q~~g~~~-------id~~~-~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~~~~ 219 (361)
T 3m5u_A 160 -----YPK-TKT-----PLIVDASSDFFSRK-------VDFSN-IALFYGGVQKNAG-ISGLSCIFIRKDMLERSKNKQI 219 (361)
T ss_dssp -----CCC-CSS-----CEEEECGGGTTSSC-------CCCTT-EEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHTCCC
T ss_pred -----ccc-cCC-----EEEEEcccccCCCC-------CCccc-CCEEEEechhccC-CCccEEEEEcHHHHhhhcCCCC
Confidence 333 488 99999999988777 55543 7999999999997 9999999999987655532 2
Q ss_pred ccccCC----CCCcccCCCCChhHHHHHHHHHHhChh-cHHHHHHHHHHHHHHHHHHHHhcC-CeEe-ecCC---eeEEE
Q 011842 332 VEYLAS----RDATIMGSRNGHAPIFLWYTLNRKGYK-GFQKEVQKCLRNAHYLKDRLLDAG-ISAM-LNEL---SSTVV 401 (476)
Q Consensus 332 ~~yl~~----~~~~~~~sr~~~~~l~~~~~l~~~g~~-g~~~~~~~~~~~a~~l~~~L~~~g-~~~~-~~~~---~~iv~ 401 (476)
+.|+.. ......+|.+....+.+..+++.+... |++++.++..+++++|++.|++.+ +... .++. ..+++
T Consensus 220 p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivs 299 (361)
T 3m5u_A 220 PSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVS 299 (361)
T ss_dssp CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEE
T ss_pred CceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEE
Confidence 333321 112223566656667778888888777 899999999999999999999987 4233 2221 35788
Q ss_pred EecCC----cHHHhh-----ceeeccc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 402 FERPQ----DEEFVR-----RWQLACQ---GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 402 f~~~~----~~~~~~-----~~~l~~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
|..++ +..+.. ++.+... .+.+|++++.++|.+|||+|+++|+++.++
T Consensus 300 f~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 300 FNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp EEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 88764 122322 2222211 146999999999999999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=224.62 Aligned_cols=287 Identities=10% Similarity=0.058 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
+...++++++++++|.+. .+++++||+|+..++.+... |++.|+++.++|.++..+++..|++++.+|.
T Consensus 88 ~~~~~l~~~la~~~~~~~----~i~~~sGt~a~~~~l~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~----- 156 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTDD----TILYSSCFDANGGLFETLLG--PEDAIISDELNHASIIDGIRLCKAQRYRYKN----- 156 (399)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHHHHHHHHSCCSEEEEECT-----
T ss_pred hHHHHHHHHHHHHHCCCc----EEEECchHHHHHHHHHHhcC--CCCEEEECCcccHHHHHHHHHcCCceeEeCC-----
Confidence 666778888889898762 56666779999988877765 8999999999999999999999999999986
Q ss_pred cCHHHHHHHHHcCCC---CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccc-cc-CCCCC
Q 011842 219 IDCADFKAKLLQNKD---KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-KK-APKVS 293 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~---~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~~-~~~~~ 293 (476)
+|+++|++.+++... ++.+|++++++|++|.+.|+++|.++|++||+ ++|+|++|+.+++... .. .....
T Consensus 157 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~ 231 (399)
T 3tqx_A 157 NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNA-----LVMVDDSHAVGFIGENGRGTPEYCG 231 (399)
T ss_dssp TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTC-----EEEEECTTTTTTSSTTSCCHHHHHT
T ss_pred CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCchHHhhC
Confidence 378899999976322 45688888999999999999999999999999 9999999974332211 00 00011
Q ss_pred CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
.....|+++.++||+++++. .|+++.++++++.+.. ...|.. .++.+.........+++... ++.++..++
T Consensus 232 ~~~~~di~~~s~sK~~~g~~-gG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 303 (399)
T 3tqx_A 232 VADRVDILTGTLGKALGGAS-GGYTSGHKEIIEWLRNRSRPYLF------SNTVAPVIVATSLKVLELLK-TEGPQLRKQ 303 (399)
T ss_dssp CTTCCSEEEEESSSSSCSSC-CEEEEECHHHHHHHHHHCHHHHS------SCCCCHHHHHHHHHHHHHHH-HTHHHHHHH
T ss_pred CCCCCcEEEecchHhcccCc-eEEEEcCHHHHHHHHHhCcceec------cCCCcHHHHHHHHHHHHHHh-hccHHHHHH
Confidence 11246899999999999544 4999999887665533 222321 11222112223333444332 567888999
Q ss_pred HHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh-----hceeec--------ccCCEEEEEEcCCCCHHHH
Q 011842 373 CLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV-----RRWQLA--------CQGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~-----~~~~l~--------~~~~~lRv~~~~~~T~edi 436 (476)
..++++++.+.|++.|+... ++..+++.+..+.. .++. +++.+. ...+.+|++++..+|+++|
T Consensus 304 ~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i 382 (399)
T 3tqx_A 304 LQENSRYFRAGMEKLGFQLV-PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQL 382 (399)
T ss_dssp HHHHHHHHHHHHHHHTCCBC-CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHH
Confidence 99999999999999887544 55566666665542 2222 233332 1235899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRSTW 450 (476)
Q Consensus 437 d~~~~~l~~~~~~~ 450 (476)
++++++|+++.+++
T Consensus 383 ~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 383 DRAIEAFGQVGKKL 396 (399)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=219.47 Aligned_cols=290 Identities=12% Similarity=0.027 Sum_probs=210.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+.. .+++|+|+++|+..++.++.. |++.|++++++|.++...++..|++++.+|++
T Consensus 68 g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~ 145 (386)
T 1u08_A 68 GVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQ 145 (386)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCC--CCCEEEEeCCCchhHHHHHHHcCCEEEEeecC
Confidence 457999999999999988764444 699999999999999888754 88999999999999999999999999999997
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ ++.+|+++|++++.++ +.+|+++++++++|.+.| +++|+++|++||+ |+++|++|+.+.+....+.+
T Consensus 146 ~~~~~~d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g~~~~~ 217 (386)
T 1u08_A 146 PPHFRVDWQEFAALLSER---TRLVILNTPHNPSATVWQQADFAALWQAIAGHEI-----FVISDEVYEHINFSQQGHAS 217 (386)
T ss_dssp TTTCCCCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC-----EEEEECTTTTCBCCSSCCCC
T ss_pred cccCcCCHHHHHHhhccc---CEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCc-----EEEEEccccccccCCCCCcC
Confidence 5 5789999999998543 447778889999999875 7899999999999 99999999876543222222
Q ss_pred CCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
...+. ...|+++.++||+++ .++++|++++++++++.+.....+. ..+.+......+..+++.. .+.++
T Consensus 218 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~a~~~~l~~~-~~~~~ 289 (386)
T 1u08_A 218 VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL-------TFSVNTPAQLALADMLRAE-PEHYL 289 (386)
T ss_dssp GGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH-------TSSCCHHHHHHHHHHHHHC-THHHH
T ss_pred hhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhh-------ccCCChHHHHHHHHHHhCC-cHHHH
Confidence 12221 237899999999997 5677999999988766553222111 1111112222223333332 45577
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----cHHH----h--hceeec-c--------cCCEEEEEE
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----DEEF----V--RRWQLA-C--------QGNIAHVVV 427 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----~~~~----~--~~~~l~-~--------~~~~lRv~~ 427 (476)
+..++..++++++.+.|++.|+....++...++.+..+. ..++ . +++.+. . ..+.+|+++
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~ 369 (386)
T 1u08_A 290 ALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF 369 (386)
T ss_dssp THHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEE
Confidence 888888999999999999887654434445566666653 2222 2 133332 1 246799888
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~ 445 (476)
. +++++|+.+++.|++
T Consensus 370 ~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 370 A--KKESTLLAAAERLRQ 385 (386)
T ss_dssp C--SCHHHHHHHHHHHTT
T ss_pred c--CCHHHHHHHHHHHhh
Confidence 6 589999999998853
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=222.50 Aligned_cols=293 Identities=14% Similarity=0.037 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+..|++.+...+++|+|||+|+..++.++.. |++.|++++++|.++..+++..|++++.+|.++
T Consensus 79 g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 156 (406)
T 1xi9_A 79 GLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIE 156 (406)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCC
Confidence 346999999999999888765556799999999999999988754 899999999999999999999999999999874
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|+++++++ +.+|++++++|++|.+.| +++|+++|++||+ |+++|++|+++.+ .....+
T Consensus 157 ~~~~~~d~~~l~~~l~~~---~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~-----~li~De~~~~~~~-~~~~~~ 227 (406)
T 1xi9_A 157 EEDWQPDIDDIRKKITDR---TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEI-----PVISDEIYDLMTY-EGEHIS 227 (406)
T ss_dssp GGTSEECHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----CEEEECTTTTCBS-SSCCCC
T ss_pred CcCCcCCHHHHHHhhCcC---ceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCC-----EEEEEcCcccccc-CCCCCC
Confidence 4579999999999654 347778889999999865 9999999999999 9999999987654 111111
Q ss_pred CCCCcccc-cEEEEcCCCCCC-CCCCceeEE--eeh----hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 291 KVSFKKPI-GSVSVSGHKFVG-CPMPCGVQI--TRM----EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 291 ~~~~~~~~-Dsi~~s~hK~l~-~p~~~G~l~--~~~----~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
...+.... |+++.++||+++ .++++|+++ .++ ++++.+.....+. .+.+......+..+++. +
T Consensus 228 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~~a~~~~l~~-~ 298 (406)
T 1xi9_A 228 PGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR--------LCPNTPAQFAAIAGLTG-P 298 (406)
T ss_dssp HHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT--------CCSCSHHHHHHHHHHHS-C
T ss_pred HHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHhC-C
Confidence 01111124 788899999997 567799999 777 7665553222221 12222222222233322 3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecC-----CcHHHh------hceeecc-------cCCEE
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERP-----QDEEFV------RRWQLAC-------QGNIA 423 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~-----~~~~~~------~~~~l~~-------~~~~l 423 (476)
.+.+++..++..++++++.+.|++.+...+..+..++++| ..+ +..++. +++.+.. ..+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~l 378 (406)
T 1xi9_A 299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHF 378 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEE
Confidence 4457788888999999999999987433344444333333 333 222222 2333321 14689
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
|+++. +|+++|+.+++.|.++.+++
T Consensus 379 Ris~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 379 RAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp EEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred EEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 99986 89999999999999887654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=217.11 Aligned_cols=288 Identities=11% Similarity=0.047 Sum_probs=211.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+.+|.+.+...+++|+|||+|+..++.+... |++.|+++.++|.++...++.+|++++.+|+++
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 146 (391)
T 3h14_A 69 GLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFD--SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAP 146 (391)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCG
T ss_pred ChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcC--CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCc
Confidence 356999999999999999765556799999999999999888865 899999999999999999999999999999985
Q ss_pred C--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 S--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+ +.+|+++|+++ +++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+... ...
T Consensus 147 ~~~~~~d~~~l~~~---~~~---~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~-~~~ 214 (391)
T 3h14_A 147 ENRLQPVPADFAGL---DLA---GLMVASPANPTGTMLDHAAMGALIEAAQAQGA-----SFISDEIYHGIEYEAK-AVT 214 (391)
T ss_dssp GGTTSCCHHHHTTS---CCS---EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBSSSC-CCC
T ss_pred ccCCCCCHHHHHhc---CCe---EEEECCCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEECcchhcccCCC-CcC
Confidence 4 46899999876 333 7788899999999987 8999999999999 9999999987654321 111
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh-ChhcHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-GYKGFQK 368 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-g~~g~~~ 368 (476)
.... ...++++.+++|+++ .++++|++++++++++.+.....+. ..+.+ .+.+++++..+ ..+.+++
T Consensus 215 ~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~~~~ 283 (391)
T 3h14_A 215 ALEL-TDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQNM-------FICAP---HASQVAALAALDCDAELQA 283 (391)
T ss_dssp GGGT-CSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHHHT-------TCCCC---HHHHHHHHHHTTCHHHHHH
T ss_pred hhhc-CCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHhhh-------ccCCC---HHHHHHHHHHhCChHHHHH
Confidence 1111 224577789999996 7889999999988765553221111 11221 34444443333 4456788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCC----cHHH----hh--ceeec--------ccCCEEEEEEcC
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQ----DEEF----VR--RWQLA--------CQGNIAHVVVMP 429 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~----~~~~----~~--~~~l~--------~~~~~lRv~~~~ 429 (476)
..++..++++++.+.|++.|+....++. ..++.+..+. ..++ .+ ++.+. ...+.+|+++..
T Consensus 284 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~ 363 (391)
T 3h14_A 284 NLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR 363 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC
Confidence 8889999999999999998876544444 3445444432 2222 22 34332 124689998775
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~~~ 450 (476)
++++|+.+++.|+++.++.
T Consensus 364 --~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 364 --ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp --CHHHHHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHHHHHh
Confidence 8899999999999887653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-24 Score=219.16 Aligned_cols=293 Identities=10% Similarity=-0.025 Sum_probs=212.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+.. .+++|+||++|+..++.++.. +++.|+++.++|.++...++..|++++.+|.+
T Consensus 78 g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 155 (429)
T 1yiz_A 78 GHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 155 (429)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCC
Confidence 457999999999999888653334 699999999999999988765 88999999999999999999999999999987
Q ss_pred C----------CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 215 I----------SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 215 ~----------~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
. ++.+|+++|++++.++ +.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+++
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~ 227 (429)
T 1yiz_A 156 PNKTGGTISSADWVLDNNELEALFNEK---TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNV-----LCVSDEVYEHM 227 (429)
T ss_dssp CCCSSSSEEGGGCBCCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTC
T ss_pred cccccccccccCcccCHHHHHHHhccC---ceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCc-----EEEEecccccc
Confidence 5 3579999999998643 447777899999999975 9999999999999 99999999876
Q ss_pred cccccccCCCCCC--cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 282 MMPFVKKAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 282 ~~~~~~~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
.+......+...+ ....|++..++||+++ .++++|++++++++++.+.....+. .++.+......+..++
T Consensus 228 ~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~a~~~~l 300 (429)
T 1yiz_A 228 VFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNC-------VYTCATPIQEAIAVGF 300 (429)
T ss_dssp BCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTT-------TCCCCHHHHHHHHHHH
T ss_pred ccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhc-------ccCCChHHHHHHHHHH
Confidence 5432212111122 2237899999999987 5677999999988766553221111 1112212222333444
Q ss_pred HHh----C--hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--------------c-HHHh------
Q 011842 359 NRK----G--YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--------------D-EEFV------ 411 (476)
Q Consensus 359 ~~~----g--~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--------------~-~~~~------ 411 (476)
+.. + .+.+++..++..++++++.+.|++.|+....++...++.+..+. + .++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 380 (429)
T 1yiz_A 301 ETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKS 380 (429)
T ss_dssp HHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHh
Confidence 441 2 34477888888999999999999888765444445566666543 1 1221
Q ss_pred hceeecc------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 412 RRWQLAC------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 412 ~~~~l~~------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++.+.. ..+.+|+++. +++++|+++++.|+++.
T Consensus 381 ~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 381 VGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 426 (429)
T ss_dssp TSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHS
T ss_pred CCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhc
Confidence 2333321 1468999886 59999999999998764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=222.18 Aligned_cols=294 Identities=13% Similarity=0.041 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+.. .+++|+|||+|+..++.++.. |++.|++++++|.++...++..|++++.+|++
T Consensus 63 g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~ 140 (411)
T 2o0r_A 63 GSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE--PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLV 140 (411)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECE
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcC--CCCEEEEeCCCcHhHHHHHHHcCCEEEEeecc
Confidence 457999999999999989764333 699999999999999988764 89999999999999999999999999999986
Q ss_pred CC---CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 215 IS---GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 215 ~~---g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
++ +.+|+++|++++.++ +.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+++.+.....
T Consensus 141 ~~~~~~~~d~~~l~~~l~~~---~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g~~~ 212 (411)
T 2o0r_A 141 PDGRGFALDADALRRAVTPR---TRALIINSPHNPTGAVLSATELAAIAEIAVAANL-----VVITDEVYEHLVFDHARH 212 (411)
T ss_dssp EETTEEECCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCTTCCC
T ss_pred ccccCCCCCHHHHHHhhccC---ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEEccccccccCCCCC
Confidence 43 569999999998643 447778889999999865 6999999999999 999999998765432111
Q ss_pred CCCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 289 APKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
.+...+. ...|+++.++||+++ .++++|++++++++++.+.....+. ..+.+......+..+++. +.+.
T Consensus 213 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~a~~~~l~~-~~~~ 284 (411)
T 2o0r_A 213 LPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQYL-------SYVGGAPFQPAVALALDT-EDAW 284 (411)
T ss_dssp CCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHHHH-------TSCCCTTHHHHHHHHHHH-CHHH
T ss_pred cChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHhhc-------cCCCChHHHHHHHHHHhC-ChHH
Confidence 1111221 237899999999997 5677999999887766553222221 111122222333344443 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----cHHH----h--hceeec----c------------
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----DEEF----V--RRWQLA----C------------ 418 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----~~~~----~--~~~~l~----~------------ 418 (476)
+++..++..++++++.+.|++.|+....++...++.+..+. ..++ . +++.+. +
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~ 364 (411)
T 2o0r_A 285 VAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQA 364 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccc
Confidence 77888889999999999999887654433334456666542 2222 2 233331 1
Q ss_pred --cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 --~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+.+|+++. +++++|+.+++.|+++.++
T Consensus 365 ~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 365 DVWNHLVRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred cCCCCeEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 2357999875 4899999999999876543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=217.51 Aligned_cols=286 Identities=11% Similarity=0.087 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~ 213 (476)
...++.+++++++++++|.+.+....++|+|||+|+..++.+... ||+.|++....|++ +...++..| +++.++.
T Consensus 46 ~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~ 122 (362)
T 2c0r_A 46 VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK--EGQTANYVMTGSWASKALKEAKLIG-DTHVAAS 122 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC--CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEec
Confidence 456788899999999999974212246789999999999888765 88998887777776 346777889 9999998
Q ss_pred CC--CC--ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-cCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 LI--SG--EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~~--~g--~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+. +. .+|.++++ +.+ ++.+|++++++|+||.+ .|+++| ||+ |+|+|++|+.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~--i~~---~t~~v~~~~~~n~tG~~~~~l~~i------~~~-----~vivD~a~~~~~~~---- 182 (362)
T 2c0r_A 123 SEASNYMTLPKLQEIQ--LQD---NAAYLHLTSNETIEGAQFKAFPDT------GSV-----PLIGDMSSDILSRP---- 182 (362)
T ss_dssp CGGGTTCSCCCGGGCC--CCT---TEEEEEEESEETTTTEECSSCCCC------TTS-----CEEEECTTTTTSSC----
T ss_pred ccccccccCCCHHHcc--cCC---CcCEEEEeCCcCccceeccccccc------CCC-----EEEEEChhhccCCc----
Confidence 62 22 35665553 433 34588899999999995 888887 899 99999999865443
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC-----CCCcccCCCCChhHHHHHHHHHHhCh
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS-----RDATIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~-----~~~~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
+++.+ .|+++.++|||++ |.|+|++++++++++.+.....++.. ......++.+......+.++++.+..
T Consensus 183 ---~~~~~-~d~~~~s~~K~~g-~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 257 (362)
T 2c0r_A 183 ---FDLNQ-FGLVYAGAQKNLG-PSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEE 257 (362)
T ss_dssp ---CCGGG-CSEEEEETTTTTC-CSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ---cchhH-CcEEEEecccccc-CcCcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHH
Confidence 23322 4999999999997 78899999998876555332112210 00112344443334455566665544
Q ss_pred h-cHHHHHHHHHHHHHHHHHHHHhcC-C-eEeec---CCeeEEEEecCC---cHHHhh-----ceeecc---cCCEEEEE
Q 011842 364 K-GFQKEVQKCLRNAHYLKDRLLDAG-I-SAMLN---ELSSTVVFERPQ---DEEFVR-----RWQLAC---QGNIAHVV 426 (476)
Q Consensus 364 ~-g~~~~~~~~~~~a~~l~~~L~~~g-~-~~~~~---~~~~iv~f~~~~---~~~~~~-----~~~l~~---~~~~lRv~ 426 (476)
. +++++.++..++++++.+.|++.| + ....+ +...+++|..+. ..++.+ +..+.. ..+.+|++
T Consensus 258 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis 337 (362)
T 2c0r_A 258 RGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRAS 337 (362)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEE
Confidence 4 689999999999999999999988 5 43322 124567777664 223322 222211 13569999
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++..+|++|+++++++|+++.++
T Consensus 338 ~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 338 IYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-24 Score=217.95 Aligned_cols=293 Identities=11% Similarity=0.054 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+. ..+++|+||++|+..++.++.. |++.|+++.++|.++...++..|++++.+|.+
T Consensus 76 g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T 2x5d_A 76 GIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLD--HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLV 153 (412)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHHTCEEEEEECS
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEeecC
Confidence 45789999999998888975333 3699999999999999988754 88999999999999999999999999999987
Q ss_pred CC-C-ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS-G-EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~-g-~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++ + .+|+++|++++.++++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+......
T Consensus 154 ~~~~~~~d~~~l~~~i~~~~~---~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g~~~~ 225 (412)
T 2x5d_A 154 PGIDFFNELERAIRESIPKPR---MMILGFPSNPTAQCVELDFFERVVALAKQYDV-----MVVHDLAYADIVYDGWKAP 225 (412)
T ss_dssp TTSCHHHHHHHHHHTEESCCS---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCBCTTCCCC
T ss_pred CccCCCCCHHHHHHhcccCce---EEEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEeccccccccCCCCCC
Confidence 64 3 4899999998875544 6777889999999865 7899999999999 9999999987664322111
Q ss_pred CCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chh
Q 011842 290 PKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYK 364 (476)
Q Consensus 290 ~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~ 364 (476)
+...+. ...++++.++||+++ .++++|++++++++++.+.....+. ..+.+ .+.++++...+ +.+
T Consensus 226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~ 295 (412)
T 2x5d_A 226 SIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYH-------DYGTF---TPLQVAAIAALEGDQQ 295 (412)
T ss_dssp CGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHHHH-------CCCCC---HHHHHHHHHHHHSCSH
T ss_pred ChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHhhh-------ccCCC---HHHHHHHHHHHhCCHH
Confidence 112221 236888999999997 6778999999888766553221111 11111 33444444433 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC------cHHHh------hceeecc-------cCCEEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ------DEEFV------RRWQLAC-------QGNIAHV 425 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~------~~~~~------~~~~l~~-------~~~~lRv 425 (476)
.+++..++..++++++.+.|++.|+....+....++.+..+. ..++. +++.+.. ..+.+|+
T Consensus 296 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRi 375 (412)
T 2x5d_A 296 CVRDIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRF 375 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEE
Confidence 577888888999999999999887654333323455566542 22221 2343321 2468999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.. ++++|+.+++.|.++.+++
T Consensus 376 s~~~--~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 376 ALIE--NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp ECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred EecC--CHHHHHHHHHHHHHHHHhc
Confidence 8875 8999999999999887653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=212.39 Aligned_cols=286 Identities=11% Similarity=0.055 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.++++++.+++.+.+|.+.+...+++|+|||+|+..++.++.. |++.|+++.++|.++...++..|++++.+|++++
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 137 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP--AQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG- 137 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--TTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC-
Confidence 4788999999998888765556799999999999999888765 8899999999999999999999999999999866
Q ss_pred ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccCCCCC
Q 011842 218 EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKAPKVS 293 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~~~~~ 293 (476)
+|+++|++++.++++ ++++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.... ....+...
T Consensus 138 -~d~~~l~~~l~~~~~---~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g~~~~~~~~~ 208 (377)
T 3fdb_A 138 -INLHDVEKGFQAGAR---SILLCNPYNPLGMVFAPEWLNELCDLAHRYDA-----RVLVDEIHAPLVFDGQHTVAAGVS 208 (377)
T ss_dssp -CCHHHHHHHHHTTCC---EEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-----EEEEECTTGGGBSSSCCCCGGGSC
T ss_pred -CCHHHHHHHhccCCC---EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEEcccchhhcCCCCCcccHHH
Confidence 999999999988754 7888899999999864 7778888999999 999999998765532 12211112
Q ss_pred Ccc-cccEEEEcCCCCCC-CCCCceeEEe-ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcHHH
Q 011842 294 FKK-PIGSVSVSGHKFVG-CPMPCGVQIT-RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGFQK 368 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~-~p~~~G~l~~-~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~~~ 368 (476)
... ..+.+..+++|+++ .++++|++++ ++++.+.+.....+. .++.+ .+.++++...+ +.+.+++
T Consensus 209 ~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~~~~~ 278 (377)
T 3fdb_A 209 DTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVI-------KDGAS---TLGLIAAEAAYRYGTDFLNQ 278 (377)
T ss_dssp HHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCHHH-------HCCCC---HHHHHHHHHHHHHCHHHHHH
T ss_pred ccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHHhh-------cCCCC---HHHHHHHHHHHhccHHHHHH
Confidence 111 24578889999994 6788998887 455555553222211 11221 33333333333 2345678
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCeEeecCCe-eEEEEecCC---c----HHHhh--ceeecc-------cCCEEEEEEcC
Q 011842 369 EVQKCLRNAHYLKDRLLDA--GISAMLNELS-STVVFERPQ---D----EEFVR--RWQLAC-------QGNIAHVVVMP 429 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~--g~~~~~~~~~-~iv~f~~~~---~----~~~~~--~~~l~~-------~~~~lRv~~~~ 429 (476)
..++..++++++.+.|++. ++.. ..+.. .++.+..+. + ..+.+ ++.+.. ..+.+|++++
T Consensus 279 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~- 356 (377)
T 3fdb_A 279 EVAYLKNNHDFLLHEIPKRIPGAKI-TPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA- 356 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCEE-CCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceE-ecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC-
Confidence 8889999999999999984 5543 34444 333455442 1 12222 344321 2478999877
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~ 448 (476)
+++++|+.+++.|+++.+
T Consensus 357 -~~~e~i~~~l~~l~~~l~ 374 (377)
T 3fdb_A 357 -TSREVLEEAIDRMAKAVS 374 (377)
T ss_dssp -SCHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 489999999999988764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-24 Score=220.12 Aligned_cols=281 Identities=14% Similarity=0.081 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
++..++++++++++|.+. .+++++||+||..++.+... |++.|+++.+.|.++..+++..|++++.++.
T Consensus 104 ~~~~~l~~~la~~~g~~~----~i~~~sGt~a~~~~l~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~----- 172 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDE----CLLSQSGWNANVGLLQTICQ--PNTNVYIDFFAHMSLWEGARYANAQAHPFMH----- 172 (409)
T ss_dssp TTSCHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHCC--TTCEEEEETTSCHHHHHHHHHTTCEEEEECT-----
T ss_pred HHHHHHHHHHHHHhCCCe----EEEecchHHHHHHHHHHhcC--CCCEEEECCCcCHHHHHHHHHcCCeEEEecC-----
Confidence 455567778888888863 56777889999999888765 9999999999999999999999999988876
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccC-CCCCCcc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKA-PKVSFKK 296 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~-~~~~~~~ 296 (476)
+|+++|++++.+.. +.+|+++.+.+++|.+.|+++|.++|++||+ |+++|++|+++.+.. .... .......
T Consensus 173 ~d~~~le~~l~~~~--~~~vi~~~~~nptG~~~~l~~l~~la~~~~~-----~li~De~~~~g~~g~~g~~~~~~~~~~~ 245 (409)
T 3kki_A 173 NNCDHLRMLIQRHG--PGIIVVDSIYSTLGTIAPLAELVNISKEFGC-----ALLVDESHSLGTHGPNGAGLLAELGLTR 245 (409)
T ss_dssp TCHHHHHHHHHHHC--SCEEEEESBCTTTCCBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSSGGGCCHHHHHTCGG
T ss_pred CCHHHHHHHHHhcC--CeEEEECCCCCCCCCcCCHHHHHHHHHHcCC-----EEEEECCccccccCCCCCcchhhcCCCC
Confidence 48999999998642 2388888999999999999999999999999 999999998654321 1110 0112223
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
.+|+++.+++|+++.+ .|+++.++++++.+.. ...|.. ..+.+.....++.++++.+. ..++..++..+
T Consensus 246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~ 315 (409)
T 3kki_A 246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIF------SSTLLPYEAAGLETTLEIIE--SADNRRQHLDR 315 (409)
T ss_dssp GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHH------SBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHH
T ss_pred CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccc------cCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 4789999999999865 5888888876654432 112211 11111112223334444332 22567788889
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh-----hceee--------cccCCEEEEEEcCCCCHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV-----RRWQL--------ACQGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~-----~~~~l--------~~~~~~lRv~~~~~~T~edid~~ 439 (476)
++++|.+.|++.|+... ...+++.+..+.. .++. ++..+ +...+.+|++++..+|+++|+++
T Consensus 316 ~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~ 393 (409)
T 3kki_A 316 MARKLRIGLSQLGLTIR--SESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKI 393 (409)
T ss_dssp HHHHHHHHHHTTTCCCC--CSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCccC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHH
Confidence 99999999999886533 3455666655432 1222 22323 12247899999999999999999
Q ss_pred HHHHHHHHHH
Q 011842 440 LNELIENRST 449 (476)
Q Consensus 440 ~~~l~~~~~~ 449 (476)
+++|+++.+.
T Consensus 394 ~~~l~~~l~~ 403 (409)
T 3kki_A 394 IEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-24 Score=216.12 Aligned_cols=294 Identities=12% Similarity=0.049 Sum_probs=208.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+...+++|+|+|+|+..++.++.. |+ +.|+++.++|.++...++..|++++.+|++
T Consensus 77 g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~--~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~ 154 (398)
T 3ele_A 77 GDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTS--DAYDEFITIAPYFPEYKVFVNAAGARLVEVPAD 154 (398)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--STTCEEEEESSCCTHHHHHHHHTTCEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcC--CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC
Confidence 456999999999999999765556799999999999999988865 88 999999999999999999999999999997
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH------hCCCCCceEEEEecCccccccc
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEE------SGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~------~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
+ ++.+|+++|++++.+++ .+|++++++|++|.+.| +++|+++|++ ||+ ++++|++|+.+.+.
T Consensus 155 ~~~~~~d~~~l~~~l~~~~---~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~-----~li~De~~~~~~~~ 226 (398)
T 3ele_A 155 TEHFQIDFDALEERINAHT---RGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPI-----FIIADEPYREIVYD 226 (398)
T ss_dssp TTTSSCCHHHHHHTCCTTE---EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCC-----EEEEECTTTTCBCT
T ss_pred CcCCcCCHHHHHHHhCcCC---CEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCe-----EEEEeccccccccC
Confidence 5 46899999999986544 47888899999999987 7778899999 999 99999999876543
Q ss_pred ccccCCCCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhh--hcCCccccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 285 FVKKAPKVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINV--LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 285 ~~~~~~~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~--l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
.. ..+........+++..+++|+++ .++++|++++++++.+. +......... ..++- ....+.++++...+
T Consensus 227 ~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~a~~~~l 300 (398)
T 3ele_A 227 GI-KVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGR----ALGYV-CAPSLFQKMIVKCQ 300 (398)
T ss_dssp TC-CCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHH----HTTCC-CSCHHHHHHHTTCT
T ss_pred CC-CcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhh----hcccc-CCCHHHHHHHHHHh
Confidence 21 11111111125678889999997 78999999999874321 1000000000 00000 11234444444433
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHhh-----ceeecc-----cCCEEEEEEcC
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFVR-----RWQLAC-----QGNIAHVVVMP 429 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~~-----~~~l~~-----~~~~lRv~~~~ 429 (476)
.... ..++..++++++.+.|++.|+....+.....+.+..+. ..++.+ ++.+.. ..+.+|+++.
T Consensus 301 ~~~~---~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~- 376 (398)
T 3ele_A 301 GATG---DINAYKENRDLLYEGLTRIGYHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC- 376 (398)
T ss_dssp TCCC---CHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC-
T ss_pred cCHH---HHHHHHHHHHHHHHHHHHcCCeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec-
Confidence 2222 35667788889999999888755444444446666553 233322 233321 1478999885
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~~~ 450 (476)
+|+++|+++++.|.++.+++
T Consensus 377 -~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 377 -VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999988765
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=214.32 Aligned_cols=275 Identities=11% Similarity=0.044 Sum_probs=202.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++++++++|.+ +...+++|+|+|+|+..++.+... +++.|+++.++|.++...++..|++++.+|.++++.+|++
T Consensus 71 ~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 147 (367)
T 3euc_A 71 ALRAKLKEVMQVP-AGMEVLLGNGSDEIISMLALAAAR--PGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRG 147 (367)
T ss_dssp HHHHHHHHHHTCC-TTCEEEEEEHHHHHHHHHHHHTCC--TTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHH
T ss_pred HHHHHHHHHhCCC-CcceEEEcCCHHHHHHHHHHHHcC--CCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHH
Confidence 4455567777883 223599999999999999887754 8999999999999999999999999999999988999999
Q ss_pred HHHHHHHc-CCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 223 DFKAKLLQ-NKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 223 ~Le~~l~~-~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+|++++.+ +++ +|++++++|++|.+ +++++|+++|++| |+ ++++|++|+.+... ...+.++. .
T Consensus 148 ~l~~~l~~~~~~---~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~-----~li~De~~~~~~~~--~~~~~~~~-~ 216 (367)
T 3euc_A 148 AMLAAMAEHQPA---IVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRS-----LVVVDEAYQPFAQE--SWMSRLTD-F 216 (367)
T ss_dssp HHHHHHHHHCCS---EEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBC-----EEEEECTTCCSSSC--CSGGGGGT-C
T ss_pred HHHHHhhccCCC---EEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCc-----EEEEeCcchhhccc--chHHHHhh-C
Confidence 99999987 665 77788999999999 4588888889999 99 99999999864421 11111111 1
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLR 375 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~ 375 (476)
..+++..+++|++..+.++|++++++++.+.+...... .+. ..+.++++...+. .+.+++..++..+
T Consensus 217 ~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~ 284 (367)
T 3euc_A 217 GNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVRPP---------YNV---NVLTEATALFALEHVAVLDEQAAQLRA 284 (367)
T ss_dssp TTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGGCCS---------SCC---CHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCEEEEecchhhcccccCceeeeeCHHHHHHHHHhCCC---------CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 24577889999977788999999988876655322111 111 2344444444443 3446888889999
Q ss_pred HHHHHHHHHHhc-CCeEeecCCeeEEEEecCCcHHHhh-----ceeecc-------cCCEEEEEEcCCCCHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDA-GISAMLNELSSTVVFERPQDEEFVR-----RWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 376 ~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~ 442 (476)
+++++.+.|++. |+. +.++..+++.+..++..++.+ ++.+.. ..+.+|++++ |++|+++++++
T Consensus 285 ~~~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~ 360 (367)
T 3euc_A 285 ERSRVAEGMAAHGGVT-VFPSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEA 360 (367)
T ss_dssp HHHHHHHHHHTSTTCE-ECCCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcE-ECCCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHH
Confidence 999999999998 554 555666677777764333322 233321 2478999975 99999999999
Q ss_pred HHHHH
Q 011842 443 LIENR 447 (476)
Q Consensus 443 l~~~~ 447 (476)
|+++.
T Consensus 361 l~~~l 365 (367)
T 3euc_A 361 FAASL 365 (367)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=222.79 Aligned_cols=291 Identities=11% Similarity=-0.014 Sum_probs=212.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+. ..+++|+||++|+..++.++.. |++.|+++.++|.++...++..|++++.+|++
T Consensus 68 g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 145 (422)
T 3fvs_A 68 GYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLK 145 (422)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECB
T ss_pred CCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcC--CCCEEEEcCCCchhhHHHHHHcCCEEEEEecc
Confidence 34689999999999999987554 4799999999999999988755 89999999999999999999999999999987
Q ss_pred C----C--------CccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 215 I----S--------GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 215 ~----~--------g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
+ + +.+|+++|++++.+++ .+|++++++|++|.+. ++++|+++|++||+ ++++|++|+
T Consensus 146 ~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~---~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~ 217 (422)
T 3fvs_A 146 PGPIQNGELGSSSNWQLDPMELAGKFTSRT---KALVLNTPNNPLGKVFSREELELVASLCQQHDV-----VCITDEVYQ 217 (422)
T ss_dssp CCCCCSSSCCBGGGSBCCHHHHHTTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTT
T ss_pred cccccccccccccCCCCCHHHHHhhcCCCc---eEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCc-----EEEEEccch
Confidence 5 3 3689999999886543 4778889999999997 59999999999999 999999998
Q ss_pred cccccccccCCCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 280 GLMMPFVKKAPKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
.+.+......+..... ...+++..+++|+++ .++++|++++++++++.+....... ..+.+ .+.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~a 287 (422)
T 3fvs_A 218 WMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNS-------VFHCP---TQSQAA 287 (422)
T ss_dssp TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTT-------TCCCC---HHHHHH
T ss_pred hhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhc-------cCCCC---cHHHHH
Confidence 7655322221111111 124577788999987 6789999999988766553211110 11111 233333
Q ss_pred HHHHh---------ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC----------------cHHH-
Q 011842 357 TLNRK---------GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ----------------DEEF- 410 (476)
Q Consensus 357 ~l~~~---------g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~----------------~~~~- 410 (476)
+...+ ..+.+++..++..++++++.+.|++.|+....+...+++.+..+. ..++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (422)
T 3fvs_A 288 VAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFV 367 (422)
T ss_dssp HHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHH
T ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHH
Confidence 33332 234577888899999999999999998765555555555554321 1122
Q ss_pred ---hh--ceeec----c--------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 411 ---VR--RWQLA----C--------QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 411 ---~~--~~~l~----~--------~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+ +..+. + ..+.+|+++.. |+++|+.+++.|+++.+
T Consensus 368 ~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 368 KWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp HHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 11 33221 1 24789998764 99999999999988764
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=219.18 Aligned_cols=289 Identities=13% Similarity=0.011 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-- 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-- 214 (476)
..++++. ++++++.+++ .+++|+|||+|+..++.++.. +++.|++++++|.++...++..|++++.+|++
T Consensus 63 ~~~l~~~----la~~~~~~~~--~v~~~~g~~~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 134 (381)
T 1v2d_A 63 LPALREA----LAEEFAVEPE--SVVVTSGATEALYVLLQSLVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLT 134 (381)
T ss_dssp CHHHHHH----HHHHHTSCGG--GEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEE
T ss_pred CHHHHHH----HHHhcCCChh--hEEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCC
Confidence 3455555 5566787643 499999999999999988854 89999999999999999999999999999987
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+++.+|+++|++++.++ +.+|++++++|++|.+.| +++|+++|++||+ ++|+|++|+++.+ .....+
T Consensus 135 ~~~~~~d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~-g~~~~~ 205 (381)
T 1v2d_A 135 PEGFRLDLSALEKALTPR---TRALLLNTPMNPTGLVFGERELEAIARLARAHDL-----FLISDEVYDELYY-GERPRR 205 (381)
T ss_dssp TTEEECCHHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBS-SSCCCC
T ss_pred CccCCcCHHHHHHhcCcC---CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCC-----EEEEEcCcccccc-CCCCCC
Confidence 56789999999988543 457888899999999865 8999999999999 9999999987654 111111
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQK 368 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~ 368 (476)
........|+++.++||+++ .++++|++++++++++.+.....+. ..+.+......+..+++... .+.+++
T Consensus 206 ~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~ 278 (381)
T 1v2d_A 206 LREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWT-------SFSAPTPLQAGVAEALKLARREGFYEA 278 (381)
T ss_dssp HHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHH-------TSSCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHhhc-------ccCCCcHHHHHHHHHHhCcccHHHHHH
Confidence 11111237899999999886 4577999999887765553222111 11111111222223333221 355788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcH--HHh--hceeecc---------cCCEEEEEEcCCCCHHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDE--EFV--RRWQLAC---------QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~--~~~--~~~~l~~---------~~~~lRv~~~~~~T~ed 435 (476)
..++..+++++|.+.|++.|+....++...++.+..+..+ ... +++.+.. ..+.+|+++.. |.++
T Consensus 279 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~ 356 (381)
T 1v2d_A 279 LREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEE 356 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEEecChHhHHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHH
Confidence 8899999999999999998876554444556666665321 111 2333321 24689998875 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRSTWY 451 (476)
Q Consensus 436 id~~~~~l~~~~~~~~ 451 (476)
|+.+++.|.++.+...
T Consensus 357 i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 357 LHLALERLGRVVNSPR 372 (381)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998876543
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=219.33 Aligned_cols=288 Identities=14% Similarity=0.187 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH--HHHc--CCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA--ARMY--RMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~--~~~~--G~~v~~v~~~ 214 (476)
.+++++++++++++| + +..+++|+|||+|+..++.+++. |++.|+++.++|++.... +..+ |++++.+|.+
T Consensus 43 ~~~~~l~~~la~~~g-~--~~~v~~~~~gt~a~~~al~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 117 (356)
T 1v72_A 43 ELTAQVKRKFCEIFE-R--DVEVFLVPTGTAANALCLSAMTP--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP 117 (356)
T ss_dssp HHHHHHHHHHHHHHT-S--CCEEEEESCHHHHHHHHHHTSCC--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG
T ss_pred hHHHHHHHHHHHHhC-C--CCcEEEeCCccHHHHHHHHHhcC--CCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC
Confidence 677888999999999 3 23479999999999999988765 899999999999998766 7777 9999999885
Q ss_pred CCCccCHHHHHH-HHHcC----CCCcEEEEEeeCCCcccc---ccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-
Q 011842 215 ISGEIDCADFKA-KLLQN----KDKPAIINVNIGTTVKGA---VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF- 285 (476)
Q Consensus 215 ~~g~~D~~~Le~-~l~~~----~~~p~~vv~t~gtt~tG~---id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~- 285 (476)
++.+|+++|++ ++.+. ..++.+|++++++ .+|. .+++++|+++|++||+ |+|+|++|+.+....
T Consensus 118 -~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~-----~li~D~a~~~~~~~~~ 190 (356)
T 1v72_A 118 -AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSL-----GLHMDGSRFANALVSL 190 (356)
T ss_dssp -GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTC-----EEEEEETTHHHHHHHH
T ss_pred -CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCC-----eEEEEchhhHhHhccC
Confidence 57899999999 88752 1245678887765 4999 6779999999999999 999999997532211
Q ss_pred cccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 286 VKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 286 ~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
......+.....+|++++++||+ +.|.++|+++.++++++.+.....+. ++......+.+..+++.+....
T Consensus 191 ~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~ 261 (356)
T 1v72_A 191 GCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATEMSYRRKRA--------GHLSSKMRFLSAQIDAYLTDDL 261 (356)
T ss_dssp TCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHHHHHHHHHT--------TCCCSSTHHHHHHHHHHTSTTH
T ss_pred CCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhhHHHHhhcc--------CchhhhHHHHHHHHHHHHHhhh
Confidence 11111111112478999999999 66877789988877665442111111 1101111233333455554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCCcHHHh-----hceeecc---cCCEEEEEEcCCCCHHHH
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQDEEFV-----RRWQLAC---QGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~---~~~~lRv~~~~~~T~edi 436 (476)
+.++.++..++++++.+.|++. |+....++.++++.+..+. ++. +++.+.. ..+.+|++++..+|++++
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i 339 (356)
T 1v72_A 262 WLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDS--AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDV 339 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECH--HHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcCH--HHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHH
Confidence 6677888889999999999885 5544445556777776652 222 2233321 157899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRST 449 (476)
Q Consensus 437 d~~~~~l~~~~~~ 449 (476)
++++++|+++.++
T Consensus 340 ~~~~~~l~~~l~~ 352 (356)
T 1v72_A 340 DHLLNQVRLAADR 352 (356)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=226.41 Aligned_cols=291 Identities=11% Similarity=0.017 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++.+.+|.+.+...+++|+||++|+..++.++.+ |++.|+++++.|.++...++..|++++.+|+++
T Consensus 96 g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 173 (447)
T 3b46_A 96 GRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN--AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINP 173 (447)
T ss_dssp CCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCC
Confidence 457999999999998888764445799999999999999988865 899999999999999999999999999999864
Q ss_pred ------------CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 216 ------------SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 216 ------------~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
++.+|+++|+++|.++ +.+|++++++|++|.+ +++++|+++|++||+ ++++|++|+.
T Consensus 174 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~-----~li~De~~~~ 245 (447)
T 3b46_A 174 PKELDQRNTRGEEWTIDFEQFEKAITSK---TKAVIINTPHNPIGKVFTREELTTLGNICVKHNV-----VIISDEVYEH 245 (447)
T ss_dssp CGGGGTSCBCSTTSEECHHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTT
T ss_pred ccccccccccccCcccCHHHHHHhhccC---CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCc-----EEEEeccchh
Confidence 3579999999988643 4478888999999998 569999999999999 9999999987
Q ss_pred ccccccccCCCCCC---cccccEEEEcCCCCCC-CCCCceeEEe-ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 281 LMMPFVKKAPKVSF---KKPIGSVSVSGHKFVG-CPMPCGVQIT-RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 281 ~~~~~~~~~~~~~~---~~~~Dsi~~s~hK~l~-~p~~~G~l~~-~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
+.+.. .+.+...+ ....+++..+++|+++ .++++|++++ ++++++.+.....+. ..+.+......+.
T Consensus 246 ~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~a~~ 317 (447)
T 3b46_A 246 LYFTD-SFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRI-------CFASPSPLQEACA 317 (447)
T ss_dssp CBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHH-------TSSCCHHHHHHHH
T ss_pred cccCC-CCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhc-------cCCCChHHHHHHH
Confidence 65532 22221222 1237889999999997 7889999999 777766553221111 1111212122222
Q ss_pred HHHHHhC-hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----------------c-HHHh-----
Q 011842 356 YTLNRKG-YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----------------D-EEFV----- 411 (476)
Q Consensus 356 ~~l~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----------------~-~~~~----- 411 (476)
.+++... ...+++..++..++++++.+.|++.|+....+.....+.+..+. + .++.
T Consensus 318 ~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~ 397 (447)
T 3b46_A 318 NSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLIN 397 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHH
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHH
Confidence 3333221 23467788888999999999999988765544445556555432 1 1222
Q ss_pred -hceee-cc-----------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 412 -RRWQL-AC-----------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 412 -~~~~l-~~-----------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
++..+ +. ..+.+|+++. .++++|+..++.|.+.
T Consensus 398 ~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 398 ELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKLL 443 (447)
T ss_dssp HTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred hCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence 13333 11 1478999886 4899999999988763
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=211.33 Aligned_cols=280 Identities=13% Similarity=0.015 Sum_probs=208.0
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
.++++++++++|.+++ .+++|+|||+|+..++.+... +++.|+++.++|.++...++..|++++.+|.++++.+|+
T Consensus 54 ~~l~~~la~~~~~~~~--~i~~~~g~~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 129 (354)
T 3ly1_A 54 LMLGNKLAAHHQVEAP--SILLTAGSSEGIRAAIEAYAS--LEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDI 129 (354)
T ss_dssp HHHHHHHHHHTTSCGG--GEEEESHHHHHHHHHHHHHCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCH
T ss_pred HHHHHHHHHHhCCChH--HEEEeCChHHHHHHHHHHHhC--CCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCH
Confidence 4566778888887643 599999999999999988765 899999999999999999999999999999988899999
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCC--cc-
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF--KK- 296 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~--~~- 296 (476)
++|++++.+. .++.+|++++++|++|.+.|++++.++++. ||+ ++++|++|+.+.... ...+.+.. ..
T Consensus 130 ~~l~~~l~~~-~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-----~li~De~~~~~~~~~-~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 130 EGLKAAVAAY-SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANT-----MFIVDEAYAEFVNDP-RFRSISPMITQGA 202 (354)
T ss_dssp HHHHHHHHTC-SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTE-----EEEEECTTGGGCCCT-TCCCSHHHHHTTC
T ss_pred HHHHHHhccC-CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCe-----EEEEeccHHHhcccc-ccCCHHHHhhhcC
Confidence 9999999831 123478888999999999999888888887 888 999999998665432 11111111 01
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCL 374 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~ 374 (476)
..++++.|+||+++ .++++|++++++++++.+.....+ ++. ..+.++++...+.. +.+++..++..
T Consensus 203 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~ 270 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG---------EKI---NFSGVDAALASMNDSAFITYSKKSND 270 (354)
T ss_dssp SSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC---------SCC---CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC---------CCC---CHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 24578889999997 778999999988877665432221 111 23444455444432 45778888899
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeec----ccCCEEEEEEcCCCCHHHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLA----CQGNIAHVVVMPNVTIDKLDDFLNELI 444 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~----~~~~~lRv~~~~~~T~edid~~~~~l~ 444 (476)
++++++.+.|++.++... ++..+++.+..+. ..++. +++.+. ...+.+|++++ |++|+++++++|+
T Consensus 271 ~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~ 346 (354)
T 3ly1_A 271 VSRQILLKALEDLKLPYL-PSEGNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMR 346 (354)
T ss_dssp HHHHHHHHHHHHHTCCBC-CCCSSEEEEECSSCHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEC-CCCceEEEEECCCCHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHH
Confidence 999999999998876543 4556667777663 23332 233333 13478999975 8999999999999
Q ss_pred HHHH
Q 011842 445 ENRS 448 (476)
Q Consensus 445 ~~~~ 448 (476)
++.+
T Consensus 347 ~~l~ 350 (354)
T 3ly1_A 347 EFRK 350 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=212.33 Aligned_cols=276 Identities=10% Similarity=0.007 Sum_probs=202.2
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC-CCCCccCH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC-LISGEIDC 221 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~-~~~g~~D~ 221 (476)
++++.+++++|+++ ..+++|+|+|+|+..++.+... |++.|+++.++|.++...++..|++++.+|+ ++++ +|+
T Consensus 69 ~lr~~la~~~~~~~--~~v~~~~g~~~a~~~~~~~l~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~ 143 (365)
T 3get_A 69 ELKSTLAQKYKVQN--ENIIIGAGSDQVIEFAIHSKLN--SKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEF 143 (365)
T ss_dssp HHHHHHHHHHTCCG--GGEEEESSHHHHHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHH
T ss_pred HHHHHHHHHhCCCc--ceEEECCCHHHHHHHHHHHHhC--CCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCH
Confidence 44555667778764 3599999999999999888765 8999999999999999999999999999998 5678 999
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH--HhCCCCCceEEEEecCcccccc--cccccCCCCCC-c-
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE--ESGFTQDRFYIHCDGALFGLMM--PFVKKAPKVSF-K- 295 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~--~~g~~~~~~~lhvD~a~~g~~~--~~~~~~~~~~~-~- 295 (476)
++|++++.+++ .+|++++++|++|.+.|+++|.++++ ++|+ ++++|++|+.+.+ ......+.... .
T Consensus 144 ~~l~~~l~~~~---~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 3get_A 144 KKLYETHKDEI---KLIFLCLPNNPLGECLDASEATEFIKGVNEDC-----LVVIDAAYNEFASFKDSKKHLEPCELIKE 215 (365)
T ss_dssp HHHHHHTTTTE---EEEEEESSCTTTCCCCCHHHHHHHHHTSCTTS-----EEEEECTTHHHHHHHCGGGCCCHHHHHHH
T ss_pred HHHHHHhCCCC---CEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCc-----EEEEeCccHHHhcccCCcccccHhHHhcc
Confidence 99999997544 47888899999999999999999988 6788 9999999986553 22111111111 1
Q ss_pred ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKC 373 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~ 373 (476)
...++++.|+||+++ .++++|++++++++.+.+...... .+. ..+.++++...+. .+.+++..++.
T Consensus 216 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 283 (365)
T 3get_A 216 FDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAP---------FNV---SNLALKAAVAAMDDDEFTEKTLENN 283 (365)
T ss_dssp CTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSCT---------TCS---CHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcCC---------CCc---CHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 124678889999986 778999999988776655322111 111 2344444444432 24578888899
Q ss_pred HHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeeccc----CCEEEEEEcCCCCHHHHHHHHHH
Q 011842 374 LRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLACQ----GNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~~----~~~lRv~~~~~~T~edid~~~~~ 442 (476)
.++++++.+.|++.|+.. .++..+++.+..+. ..++. +++.+... .+.+|+++. |++|+++++++
T Consensus 284 ~~~~~~l~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~ 359 (365)
T 3get_A 284 FSQMELYKEFAKKHNIKI-IDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTE 359 (365)
T ss_dssp HHHHHHHHHHHHHTTCEE-CCCSSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEE-CCCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHH
Confidence 999999999999997653 45556667777664 23332 23333222 578999976 89999999999
Q ss_pred HHHHH
Q 011842 443 LIENR 447 (476)
Q Consensus 443 l~~~~ 447 (476)
|+++.
T Consensus 360 l~~~l 364 (365)
T 3get_A 360 FDKIL 364 (365)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=217.52 Aligned_cols=287 Identities=11% Similarity=0.011 Sum_probs=202.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++.+++ |.++ ..+++|+|+++|+..++.++.. +++.|+++.++|.++...++..|++++.+|.+++
T Consensus 76 ~~~l~~~la~~~----g~~~--~~v~~~~g~~~al~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 147 (397)
T 2zyj_A 76 YAPLRAFVAEWI----GVRP--EEVLITTGSQQALDLVGKVFLD--EGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE 147 (397)
T ss_dssp CHHHHHHHHHHH----TSCG--GGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred CHHHHHHHHHHh----CCCh--hhEEEeccHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC
Confidence 456666655554 7653 3599999999999999888765 8899999999999999999999999999998765
Q ss_pred CccCHHHHHHHHHc-CCCCcEEE-EEeeCCCccccccCH---HHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 217 GEIDCADFKAKLLQ-NKDKPAII-NVNIGTTVKGAVDDL---DLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 217 g~~D~~~Le~~l~~-~~~~p~~v-v~t~gtt~tG~id~l---~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+ +|+++|++++++ +++ +| +++++.|++|.+.|. ++|+++|++||+ ++++|++|+.+.+......+.
T Consensus 148 ~-~d~~~l~~~l~~~~~~---~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g~~~~~~ 218 (397)
T 2zyj_A 148 G-PDLDALEEVLKRERPR---FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGL-----VVVEDDAYRELYFGEARLPSL 218 (397)
T ss_dssp E-ECHHHHHHHHHHCCCS---CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTC-----CEEEECTTTTCBCSSCCCCCH
T ss_pred C-CCHHHHHHHHhhcCCe---EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEeCCcccccCCCCCCCch
Confidence 5 999999999986 443 44 567889999998764 599999999999 999999998765432111110
Q ss_pred CCCc-c---cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh---h
Q 011842 292 VSFK-K---PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY---K 364 (476)
Q Consensus 292 ~~~~-~---~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~---~ 364 (476)
.... . ...++..++||+++.++++|++++++++++.+.....+. ..+. ..+.++++...+.. +
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~---~~~~~~a~~~~l~~~~~~ 288 (397)
T 2zyj_A 219 FELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQAKQGA-------DLHT---PMLNQMLVHELLKEGFSE 288 (397)
T ss_dssp HHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------HSSC---CHHHHHHHHHHHTTTHHH
T ss_pred hhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHHHHHHhh-------cCCC---CHHHHHHHHHHHHhCCHH
Confidence 1110 1 123778899999996689999999987766553211111 1111 13444444444432 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhc---CCeEeecCCeeEEEEecCC---cHHHh-----hceeec----c-----cCCEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDA---GISAMLNELSSTVVFERPQ---DEEFV-----RRWQLA----C-----QGNIAH 424 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~---g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~----~-----~~~~lR 424 (476)
.+++..++..++++++.+.|++. |+....+..++++.+..+. ..++. +++.+. . ..+.+|
T Consensus 289 ~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iR 368 (397)
T 2zyj_A 289 RLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLR 368 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEE
Confidence 46677778888999999999885 5544444445667677653 22232 233332 1 247899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+++... |+++|+++++.|.++.+++.
T Consensus 369 is~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 369 LSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 998764 99999999999999887765
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=216.62 Aligned_cols=294 Identities=14% Similarity=0.013 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
..++++++.+++.+. |.+.+...+++|+|||+|+..++.++.. |++.|+++.++|.++...++..|++++.+|.++
T Consensus 98 ~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 174 (427)
T 3dyd_A 98 FLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLAN--PGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPE 174 (427)
T ss_dssp CHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred cHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHcCCEEEEEecccc
Confidence 347777766665443 4333345699999999999999988865 899999999999999999999999999999863
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++.+|+++|++++.+++ .+|++++++|++|.+.| +++|+++|++||+ ++++|++|+++........+.
T Consensus 175 ~~~~~d~~~l~~~l~~~~---~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 175 KSWEIDLKQLEYLIDEKT---ACLIVNNPSNPCGSVFSKRHLQKILAVAARQCV-----PILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp GTTEECHHHHHSSCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----CEEEECTTTTCBCSSCCCCCG
T ss_pred cCCCCCHHHHHHHhccCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEcCchhhccCCCcCccH
Confidence 56799999999886543 47788899999999999 9999999999999 999999998765432111111
Q ss_pred CCCccccc-EEEEcCCCC-CCCCCCceeEEeeh-------hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 292 VSFKKPIG-SVSVSGHKF-VGCPMPCGVQITRM-------EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 292 ~~~~~~~D-si~~s~hK~-l~~p~~~G~l~~~~-------~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
.......+ +++.|++|. ++.++++|++++++ ++.+.+...... ..+.+......+..+++...
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~~~~~a~~~~L~~~~ 318 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR--------ILGPCTIVQGALKSILCRTP 318 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH--------HCCSCHHHHHHHHHHHHHSC
T ss_pred HHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc--------cCCCCHHHHHHHHHHHHhcC
Confidence 11111222 456799996 56678899999985 233333211100 11122122233333444334
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecC--------CcHHHh------hceeecc-----cCCE
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERP--------QDEEFV------RRWQLAC-----QGNI 422 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~--------~~~~~~------~~~~l~~-----~~~~ 422 (476)
.+.+++..++..++++++.+.|++. ++....+...+.+.+..+ ...++. ++..+.. ..++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~ 398 (427)
T 3dyd_A 319 GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNF 398 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCe
Confidence 5667888899999999999999998 443333444555555443 122222 2222321 2478
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+|+++. +++++|+.+++.|.++.+++.
T Consensus 399 iRis~~--~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 399 IRVVIT--VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp EEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence 999875 799999999999999887654
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=214.72 Aligned_cols=284 Identities=11% Similarity=-0.029 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC--CcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP--DGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p--~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
..++++++.+++.+.+|.+.+...+++|+|+|+++..++.++.. + ++.|+++.++|.++...++..|++++.+|.+
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 138 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLF--DYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLT 138 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTT--TCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcC--CCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccC
Confidence 46999999999999999854445699999999999999988876 7 8999999999999999999999999999998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+++.+++ +|++++.++++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.... ...+.
T Consensus 139 ~~~~~~~-~l~~~~~~~~~---~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~-~~~~~ 208 (376)
T 3ezs_A 139 KENDFTP-SLNEKELQEVD---LVILNSPNNPTGRTLSLEELISWVKLALKHDF-----ILINDECYSEIYENT-PPPSL 208 (376)
T ss_dssp GGGTSCC-CCCHHHHHHCS---EEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCBSSS-CCCCH
T ss_pred CCCCcch-hHHhhhccCCC---EEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCc-----EEEEEccchhhccCC-CCCCH
Confidence 7656666 78888876554 7777889999999966 7788888999999 999999998765432 11111
Q ss_pred CCC-------cccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-
Q 011842 292 VSF-------KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG- 362 (476)
Q Consensus 292 ~~~-------~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g- 362 (476)
... ....+++..+++|+++ .++++|+++.++++++.+.....+. ..+. ..+.++++...+.
T Consensus 209 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~a~~~~l~~ 278 (376)
T 3ezs_A 209 LEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRAYL-------GYTS---ANAIQKASEAAWLD 278 (376)
T ss_dssp HHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHTTT-------CCCC---CHHHHHHHHHHHHC
T ss_pred HHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHhhh-------cCCC---ChHHHHHHHHHHhC
Confidence 111 1235688899999995 7789999999887766553221111 1111 1333444333332
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHh------hceeec---------ccCCEEEEEE
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV------RRWQLA---------CQGNIAHVVV 427 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~------~~~~l~---------~~~~~lRv~~ 427 (476)
.+.+++..++..++++++.+.|+ ++. .+...+++.+..++..++. +++.+. ...+.+|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~ 354 (376)
T 3ezs_A 279 DRHAEFFRNIYANNLKLARKIFK--NTL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLAL 354 (376)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHST--TCC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc--CCC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEE
Confidence 33467788888889999998887 543 3444566666666433322 233332 1347899987
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
+ .|+++|++++++|.++.+
T Consensus 355 ~--~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 355 V--YDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp C--SCHHHHHHHHHHHHHHHC
T ss_pred c--CCHHHHHHHHHHHHHHHH
Confidence 6 399999999999988764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=218.99 Aligned_cols=286 Identities=11% Similarity=0.091 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
....++++.+++++|.+ + .+++++||+|+..++.++.. |++.|+++.+.|.++..+++..|++++.++.
T Consensus 90 ~~~~~l~~~la~~~g~~-~---~i~~~sGs~a~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~----- 158 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-D---AILYSSCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYAN----- 158 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESCHHHHHHTTHHHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECT-----
T ss_pred HHHHHHHHHHHHHhCCC-c---EEEeCChHHHHHHHHHHHcC--CCCEEEEcchhHHHHHHHHHHcCCceEEECC-----
Confidence 44556667778888886 2 56677789999988887754 8999999999999999999999999998884
Q ss_pred cCHHHHHHHHHcCCC---CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcc-cccccccccC-CCCC
Q 011842 219 IDCADFKAKLLQNKD---KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALF-GLMMPFVKKA-PKVS 293 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~---~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~-g~~~~~~~~~-~~~~ 293 (476)
+|+++|++++.+... ++.+|++++++|++|.+.|+++|.++|++||+ ++++|++|+ ++..+..... ..++
T Consensus 159 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-----~li~De~~~~g~~~~~g~~~~~~~~ 233 (401)
T 1fc4_A 159 NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDA-----LVMVDDSHAVGFVGENGRGSHEYCD 233 (401)
T ss_dssp TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTE-----EEEEECTTTTTTSSTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCC-----EEEEECcccccccCCCCCccHHHcC
Confidence 489999999975211 34588888999999999999999999999999 999999996 5443211110 0122
Q ss_pred CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
.....|+++.++||+++++.+ |++++++++++.+.... .|. ..++.+......+..+++.+. ..++..++
T Consensus 234 ~~~~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~ 304 (401)
T 1fc4_A 234 VMGRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRPYL------FSNSLAPAIVAASIKVLEMVE--AGSELRDR 304 (401)
T ss_dssp CTTCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHHHH------HSCCCCHHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred CCcCCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCcCce------eCCCCCHHHHHHHHHHHHHHh--cCHHHHHH
Confidence 222479999999999965665 99999887766553211 121 111222122222333333331 14677888
Q ss_pred HHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeecc--------cCCEEEEEEcCCCCHHHH
Q 011842 373 CLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKL 436 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edi 436 (476)
..++++++.+.|++.|+... ++..+++.+..+. ..++. +++.+.. ..+.+|++++..+|++++
T Consensus 305 ~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i 383 (401)
T 1fc4_A 305 LWANARQFREQMSAAGFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQI 383 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHH
Confidence 89999999999999876544 4556677776653 12222 2333321 135799999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011842 437 DDFLNELIENRSTW 450 (476)
Q Consensus 437 d~~~~~l~~~~~~~ 450 (476)
++++++|+++.+++
T Consensus 384 ~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 384 TRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=216.54 Aligned_cols=290 Identities=9% Similarity=-0.023 Sum_probs=206.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 137 SRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
..++++++.+++.+.+|.+.+. ..+++|+||++|+..++.++.. +++.|+++.++|.++...++..|++++.++++
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~ 140 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVD--PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRS 140 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcC--CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccc
Confidence 3589999999999988876544 5699999999999999988865 89999999999999999999999999999886
Q ss_pred ----------CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 215 ----------ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 215 ----------~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.++.+|+++|++++.++ +.+|++++++|++|.+ +++++|+++|++||+ ++++|++|+.+
T Consensus 141 ~~~~g~~~~~~~~~~d~~~l~~~~~~~---~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~ 212 (410)
T 3e2y_A 141 KPTDGMKWTSSDWTFDPRELESKFSSK---TKAIILNTPHNPLGKVYTRQELQVIADLCVKHDT-----LCISDEVYEWL 212 (410)
T ss_dssp CCCCSSCCBGGGEECCHHHHHTTCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTC
T ss_pred cccccccccccCCcCCHHHHHhhcCCC---ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCc-----EEEEEhhhhhc
Confidence 24568999999988643 3478888999999999 689999999999999 99999999876
Q ss_pred cccccccCCCCCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 282 MMPFVKKAPKVSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 282 ~~~~~~~~~~~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
.+......+..... ...+++..+++|+++ .++++|++++++++++.+.....+. ..+.+......+..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~l 285 (410)
T 3e2y_A 213 VYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNS-------FYTCATPLQAALAEAF 285 (410)
T ss_dssp BCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTT-------TCCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHHHHHHhh-------ccCCChHHHHHHHHHH
Confidence 55322221111111 124577788899887 7789999999988766553211110 1111112222222333
Q ss_pred HH------hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--c------------HHH----h--h
Q 011842 359 NR------KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--D------------EEF----V--R 412 (476)
Q Consensus 359 ~~------~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~------------~~~----~--~ 412 (476)
.. .....+++..++..++++++.+.|++.|+....+....++.+..+. . .++ . +
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 365 (410)
T 3e2y_A 286 WIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHK 365 (410)
T ss_dssp HHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHc
Confidence 31 1234577888888999999999999998765555555555544321 0 122 1 1
Q ss_pred ceeec----c--------cCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 413 RWQLA----C--------QGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 413 ~~~l~----~--------~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+..+. + ..+.+|+++.. |+++|+++++.|++
T Consensus 366 gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 366 KLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp SEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred CEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 33331 1 13789998754 99999999998864
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=211.43 Aligned_cols=290 Identities=11% Similarity=0.076 Sum_probs=205.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-- 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-- 214 (476)
..++++++++++++++|.+.+...+++|+|||+|+..++.++.. +++.|+++.++|.++...++..|++++.+|++
T Consensus 69 ~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (391)
T 4dq6_A 69 PDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTK--ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKL 146 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCC--CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeec
Confidence 46899999999999999553445699999999999999988865 89999999999999999999999999999987
Q ss_pred CC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 IS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 ~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+ +.+|+++|++++++ +.+|+++++++++|.+ +++++|+++|++||+ ++++|++|+++........
T Consensus 147 ~~~~~~~d~~~l~~~l~~----~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g~~~~ 217 (391)
T 4dq6_A 147 ENGNYIMDYEDIENKIKD----VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNV-----KIISDEIHSDIILKKHKHI 217 (391)
T ss_dssp TTSCEECCHHHHHHHCTT----EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCTTCCCC
T ss_pred CCCceEeeHHHHHHHhhc----CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCC-----EEEeeccccccccCCCCcc
Confidence 33 45999999999976 3478888999999999 779999999999999 9999999987654322111
Q ss_pred CCCCCcc---cccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChh
Q 011842 290 PKVSFKK---PIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 290 ~~~~~~~---~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
+...... ...++..++||+++ .++++|++++++ ++.+.+........ .++.+......+.+++.. ..+
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~l~~-~~~ 290 (391)
T 4dq6_A 218 PMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID------IKRNNCFSLVATEASYNN-GES 290 (391)
T ss_dssp CGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTT------CCCCCHHHHHHHHHHHHH-CHH
T ss_pred CHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHhc-hHH
Confidence 1111111 13377889999986 678999999987 55554422111100 111211122222233332 234
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh-c-CCeEeecCCeeE-EEEecCC----cHHH----h-h-ceeecc-------cCCEEE
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLD-A-GISAMLNELSST-VVFERPQ----DEEF----V-R-RWQLAC-------QGNIAH 424 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~-~-g~~~~~~~~~~i-v~f~~~~----~~~~----~-~-~~~l~~-------~~~~lR 424 (476)
.+++..++..++++++.+.|++ . ++. +.++..+. +.+..+. ..++ . + ++.+.. ..+.+|
T Consensus 291 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (391)
T 4dq6_A 291 WLESFLEYLESNIDFAIKYINENMPKLK-VRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQR 369 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSE-ECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCE-ecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEE
Confidence 4777888899999999999988 4 544 44444433 3355442 2222 2 2 343321 237899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~ 447 (476)
++++ +++++|+.+++.|+++.
T Consensus 370 is~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 370 INLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EECC--SCHHHHHHHHHHHHHHH
T ss_pred EEEc--CCHHHHHHHHHHHHHHh
Confidence 9887 79999999999998764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=216.67 Aligned_cols=292 Identities=13% Similarity=0.045 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-IS 216 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~ 216 (476)
.++++++++|+++.+|++.+..++++|+|+++|+..++.++.. +++.|++..++|.++..+++..|.+++.+|.+ .+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~ 176 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE--KGDAVLINSPVYYPFARTIRLNDHRLVENSLQIIN 176 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEET
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEECCCCcHHHHHHHHHCCCEEEeccccccC
Confidence 5899999999999999665556799999999999999998865 88999999999999999999999999999985 33
Q ss_pred --CccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 217 --GEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 217 --g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.+|+++|++++. +++ .+|+++++.+++|.+ +++++|+++|++||+ ++++|++|+++........+
T Consensus 177 ~~~~~d~~~le~~i~~~~~---~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~-----~li~De~~~~~~~~g~~~~~ 248 (421)
T 3l8a_A 177 GRFEIDFEQLEKDIIDNNV---KIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGV-----ILVSDEIHQDLALFGNTHHS 248 (421)
T ss_dssp TEEECCHHHHHHHHHHTTE---EEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCBCTTCCCCC
T ss_pred CCeeeCHHHHHHHhhccCC---eEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEEccccccccCCCCCcc
Confidence 3689999999998 344 477888999999998 789999999999999 99999999876654322222
Q ss_pred CCCCc---ccccEEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 291 KVSFK---KPIGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 291 ~~~~~---~~~Dsi~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
...+. ...+.+..+++|+++ .++++|+++++ +++.+.+....... + .++.+.....++.+++.. +.+.
T Consensus 249 ~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~-----~-~~~~n~~~~~a~~aal~~-~~~~ 321 (421)
T 3l8a_A 249 LNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLAN-----N-QHEVPTVGMIATQAAFQY-GKPW 321 (421)
T ss_dssp GGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHT-----T-CSCCCHHHHHHHHHHHHH-CHHH
T ss_pred HHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhc-----c-cCCCCHHHHHHHHHHHhc-cHHH
Confidence 11211 125577889999986 67899999998 55655442211110 0 111111222223333332 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecCC----cHH----Hhh--ceeec-------ccCCEEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERPQ----DEE----FVR--RWQLA-------CQGNIAHVVV 427 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~~----~~~----~~~--~~~l~-------~~~~~lRv~~ 427 (476)
+++..++..+++++|.+.|++. ++....+....+..+..+. ..+ +.+ ++.+. ...+.+|+++
T Consensus 322 ~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~ 401 (421)
T 3l8a_A 322 LEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNV 401 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEe
Confidence 7888888999999999999986 5544433333333344332 222 222 33332 2247899987
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~ 448 (476)
. +|+++|+++++.|+++.+
T Consensus 402 ~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 402 A--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp C--SCHHHHHHHHHHHHHHC-
T ss_pred c--CCHHHHHHHHHHHHHHHh
Confidence 6 799999999999988753
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-23 Score=208.49 Aligned_cols=275 Identities=10% Similarity=-0.025 Sum_probs=203.6
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
.++++++++++|.+++ .+++|+|||+|+..++.+... +++.|+++.++|.++...++..|++++.+|.++++.+|+
T Consensus 70 ~~lr~~la~~~~~~~~--~v~~~~g~t~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 145 (363)
T 3ffh_A 70 SSLRKEVADFYQLEEE--ELIFTAGVDELIELLTRVLLD--TTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDL 145 (363)
T ss_dssp HHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHCS--TTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCH
T ss_pred HHHHHHHHHHhCCChh--hEEEeCCHHHHHHHHHHHHcc--CCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCH
Confidence 3455667777887643 599999999999999888754 899999999999999999999999999999988899999
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCCCCc--cc
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK--KP 297 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~--~~ 297 (476)
++|++++.+++ .+|+++++++++|.+.|+++|.++++.+ |+ ++|+|++|+.+.. . ......... ..
T Consensus 146 ~~l~~~i~~~~---~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~-----~li~De~~~~~~~-~-~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 146 EGMLNAIDEKT---TIVWICNPNNPTGNYIELADIQAFLDRVPSDV-----LVVLDEAYIEYVT-P-QPEKHEKLVRTYK 215 (363)
T ss_dssp HHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHTTSCTTS-----EEEEECTTGGGCS-S-CCCCCGGGGGTCT
T ss_pred HHHHHhcccCC---CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCc-----EEEEeCchHhhcC-c-cccCHHHHhhcCC
Confidence 99999996544 4888889999999999999999999988 88 9999999986554 1 111111111 11
Q ss_pred ccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLR 375 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~ 375 (476)
.+++..+++|+++ .++++|++++++++.+.+...... .+ ...+.++++...+. .+.+++..++..+
T Consensus 216 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 283 (363)
T 3ffh_A 216 NLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPP---------FN---TTSIGQKLAIEAIKDQAFIGECRTSNAN 283 (363)
T ss_dssp TEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCCS---------CC---CBHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCCC---------CC---CCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3466788899997 678889999988876655322111 11 12344444444332 2456788888999
Q ss_pred HHHHHHHHHHh-cCCeEeecCCeeEEEEecCC-cHHHh-----hceeecc-----cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLD-AGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLAC-----QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 376 ~a~~l~~~L~~-~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~~-----~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
+++++.+.|++ .|+. +.++..+++.+..+. ..++. +++.+.. ..+.+|+++. |++|+++++++|
T Consensus 284 ~~~~l~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l 359 (363)
T 3ffh_A 284 GIKQYEAFAKRFEKVK-LYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALL 359 (363)
T ss_dssp HHHHHHHHHHHCTTCE-ECCCCSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCce-ECCCCCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHH
Confidence 99999999999 6664 445556777777763 33332 2333322 2478999876 999999999999
Q ss_pred HHH
Q 011842 444 IEN 446 (476)
Q Consensus 444 ~~~ 446 (476)
+++
T Consensus 360 ~~~ 362 (363)
T 3ffh_A 360 EKL 362 (363)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=216.48 Aligned_cols=289 Identities=12% Similarity=0.066 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
..++++++.+++.+.+|.+.++ ..+++|+|+++|+..++.++.. |++.|+++.++|.++...++..|++++.+|.++
T Consensus 87 ~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~ 164 (404)
T 2o1b_A 87 KEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN--PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP 164 (404)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC--CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc
Confidence 4589999999999988986332 4599999999999999988765 889999999999999999999999999999876
Q ss_pred C-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 S-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 ~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+ ..+|+++|++++.+++ .+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+.. ...+.
T Consensus 165 ~~~~~d~~~l~~~l~~~~---~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g-~~~~~ 235 (404)
T 2o1b_A 165 PHYLPDWSKVDSQIIDKT---KLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDT-----KIVHDFAYGAFGFDA-KNPSI 235 (404)
T ss_dssp TTCCCCGGGSCHHHHHHE---EEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSC-----EEEEECTTTTCBSSS-CCCCG
T ss_pred ccCcCCHHHHHHhhccCc---eEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEccchhcccCC-CCCCh
Confidence 3 4589999999997544 47777889999999975 7899999999999 999999998765432 22122
Q ss_pred CCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcH
Q 011842 292 VSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGF 366 (476)
Q Consensus 292 ~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~ 366 (476)
.... ...++++.++||+++ .++++|++++++++++.+.....+. .++.+ .+.++++...+ +.+.+
T Consensus 236 ~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~~~ 305 (404)
T 2o1b_A 236 LASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTHT-------NAGMF---GALQDAAIYALNHYDDFL 305 (404)
T ss_dssp GGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHHH-------CCCCC---HHHHHHHHHHHHHCHHHH
T ss_pred hhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhhc-------cCCCC---HHHHHHHHHHHhcCHHHH
Confidence 2221 135788999999997 6678999999888766553221111 11111 33444444333 23457
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHH----h--hceeecc-------cCCEEEEEEcCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEF----V--RRWQLAC-------QGNIAHVVVMPN 430 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~----~--~~~~l~~-------~~~~lRv~~~~~ 430 (476)
++..++..++++++.+.|++.|+....++...++.+..+. ..++ . +++.+.. ..+.+|+++..
T Consensus 306 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~- 384 (404)
T 2o1b_A 306 EEQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL- 384 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-
Confidence 7778888899999999999887654433333345566553 1222 2 2333321 24689998875
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENRS 448 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~ 448 (476)
++++|+.+++.|.++.+
T Consensus 385 -~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 385 -DDQKLDEAAIRLTELAY 401 (404)
T ss_dssp -CTTHHHHHHHHHHGGGG
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 78899999999987654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=212.21 Aligned_cols=281 Identities=11% Similarity=-0.003 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
....++++.+++++|.+ ..+++++||+|+..++.++.. |++.|+++.+.|.++..+++..|++++.+|.
T Consensus 84 ~~~~~l~~~la~~~g~~----~~i~~~sGt~a~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~----- 152 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS----RALLFISGFAANQAVIAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAH----- 152 (384)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECT-----
T ss_pred HHHHHHHHHHHHHhCCC----cEEEeCCcHHHHHHHHHHhCC--CCcEEEEcccccHHHHHHHHHcCCCEEEeCC-----
Confidence 44556667777888885 266777779999998887754 8999999999999999999999999999985
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-ccccC-CCCCCcc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKKA-PKVSFKK 296 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~~-~~~~~~~ 296 (476)
+|+++|++++++......+|+++++.+++|.+.|+++|.++|++||+ ++++|++|+.+.+. ..... ..+. .
T Consensus 153 ~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~De~~~~~~~~~~~~~~~~~~~--~ 225 (384)
T 1bs0_A 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNG-----WLMVDDAHGTGVIGEQGRGSCWLQK--V 225 (384)
T ss_dssp TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSSGGGCCHHHHTT--C
T ss_pred CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCc-----EEEEECCcccceecCCCCchHHhcC--C
Confidence 48999999998764334678888899999999999999999999999 99999999755432 11110 0011 2
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
..|+++.|+||+++ |.+ |++++++++++.+... ..|.. ..+.+......+.++++.+.....++..++..+
T Consensus 226 ~~di~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 297 (384)
T 1bs0_A 226 KPELLVVTFGKGFG-VSG-AAVLCSSTVADYLLQFARHLIY------STSMPPAQAQALRASLAVIRSDEGDARREKLAA 297 (384)
T ss_dssp CCSEEEEESSSTTS-SCC-EEEEECHHHHHHHHHHCHHHHS------SBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCcEEEeeccchhh-ccC-cEEEeCHHHHHHHHHhchhhhc------CCCCCHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 37899999999998 555 9999988776655321 12221 111211122223334444321145678888999
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCC---cHHHh-----hceeecc--------cCCEEEEEEcCCCCHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQ---DEEFV-----RRWQLAC--------QGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l~~--------~~~~lRv~~~~~~T~edid~~ 439 (476)
+++++.+.|++.|+.. .++.++++.+..+. ..++. +++.+.. ..+.+|++++..+|+++|+++
T Consensus 298 ~~~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~ 376 (384)
T 1bs0_A 298 LITRFRAGVQDLPFTL-ADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRL 376 (384)
T ss_dssp HHHHHHHHHTTSSCEE-CSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCcc-cCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHH
Confidence 9999999999987643 34445555555442 12222 2333321 136899999999999999999
Q ss_pred HHHHHHH
Q 011842 440 LNELIEN 446 (476)
Q Consensus 440 ~~~l~~~ 446 (476)
+++|+++
T Consensus 377 ~~~l~~~ 383 (384)
T 1bs0_A 377 LEVLHGN 383 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=211.94 Aligned_cols=286 Identities=15% Similarity=0.124 Sum_probs=205.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
+..++++++.+++.+.+|.+.+.. .+++|+|+++|+..++.++.. |++.|+++.++|.++...++..|++++.+|++
T Consensus 64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 141 (376)
T 2dou_A 64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTE--PEDLLLLPEVAYPSYFGAARVASLRTFLIPLR 141 (376)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHTTCEEEEECBC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcC--CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCC
Confidence 567889999999888889863323 599999999999999888765 88999999999999999999999999999984
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.+..+|+++|++++.+++ .+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+.. ...+.
T Consensus 142 ~~~~~d~~~l~~~l~~~~---~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~-~~~~~ 212 (376)
T 2dou_A 142 EDGLADLKAVPEGVWREA---KVLLLNYPNNPTGAVADWGYFEEALGLARKHGL-----WLIHDNPYVDQVYEG-EAPSP 212 (376)
T ss_dssp TTSSBCGGGSCHHHHHHE---EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTGGGBSSS-CCCCG
T ss_pred CCCCCCHHHHHHhhccCc---eEEEECCCCCCcCccCCHHHHHHHHHHHHHcCC-----EEEEEccchhcccCC-CCCCh
Confidence 445689999999997543 47778889999999866 7889999999999 999999998765432 11111
Q ss_pred CCCc--ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcH
Q 011842 292 VSFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGF 366 (476)
Q Consensus 292 ~~~~--~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~ 366 (476)
+... ...+++..+++|+++ .++++|+++.++++++.+....... ..+.+ .+.++++...+. .+.+
T Consensus 213 ~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~-------~~~~~---~~~~~a~~~~l~~~~~~~ 282 (376)
T 2dou_A 213 LALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVI-------DFNQY---AGVLRMGVEALKTPKEVV 282 (376)
T ss_dssp GGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHHH-------CCCSC---HHHHHHHHHHHTSCHHHH
T ss_pred hhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHhc-------ccCCC---HHHHHHHHHHHhCcHHHH
Confidence 2221 125678889999986 6678999999888766553211111 11111 234444444442 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecCCc---HHHh-----hceeecc-------cCCEEEEEEcCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERPQD---EEFV-----RRWQLAC-------QGNIAHVVVMPN 430 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~~~---~~~~-----~~~~l~~-------~~~~lRv~~~~~ 430 (476)
++..++..++++++.+.|++. +. +.++. ..++.+..+.. .++. +++.+.. ..+.+|++++.
T Consensus 283 ~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~- 359 (376)
T 2dou_A 283 RGYARVYRERALGMAEALKGV-LS-LLPPRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR- 359 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-SE-ECCCCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cC-ccCCCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC-
Confidence 777888889999999999887 43 33343 34555666531 2232 2333321 24789999864
Q ss_pred CCHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIEN 446 (476)
Q Consensus 431 ~T~edid~~~~~l~~~ 446 (476)
|+++|+.+++.|+++
T Consensus 360 -~~~~i~~~l~~l~~~ 374 (376)
T 2dou_A 360 -PLEELLEAAKRIREA 374 (376)
T ss_dssp -CHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHH
Confidence 899999999998765
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=209.22 Aligned_cols=296 Identities=8% Similarity=-0.024 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC-------cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeE
Q 011842 136 HSRQFEVGVLDWFARLWELENN-------EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEC 208 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~-------~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v 208 (476)
+..++++++.+++++..|.+.+ ..++++|+|+++|+..++.+..+ ||+.|++.+++|.++...++..|+++
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~ 156 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--PGDNVLLDEPAYSGTLQSLHPLGCNI 156 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHGGGTCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHcCCEE
Confidence 4468999999999999998752 24699999999999999988865 89999999999999999999999999
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCC---------CCcEEEEE-eeCCCccccccCHH---HHHHHHHHhCCCCCceEEEEe
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNK---------DKPAIINV-NIGTTVKGAVDDLD---LVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~---------~~p~~vv~-t~gtt~tG~id~l~---~I~~ia~~~g~~~~~~~lhvD 275 (476)
+.+|++++ .+|+++|++++++.. .++.+|++ +++.|+||.+.+.+ +|+++|++||+ ++++|
T Consensus 157 ~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~-----~li~D 230 (425)
T 2r2n_A 157 INVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF-----LIIED 230 (425)
T ss_dssp EEECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEE
T ss_pred EEeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEE
Confidence 99998765 499999999997311 22346555 57899999997755 99999999999 99999
Q ss_pred cCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 276 GALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 276 ~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
++|+.+.+......+...+. ...+++..+++|+++.++++|++++++++++.+.....+. ..+.+ .+.+
T Consensus 231 e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~-------~~~~~---~~~q 300 (425)
T 2r2n_A 231 DPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVS-------TLHPS---TFNQ 300 (425)
T ss_dssp CTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTT-------TCSSC---HHHH
T ss_pred CCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHh-------cCCCC---HHHH
Confidence 99986654322211112221 1245778899999997889999999988766553211111 11112 3333
Q ss_pred HHHHHHhCh-------hcHHHHHHHHHHHHHHHHHHHHhc--CCeEee-cCCeeEEEEecCC---cHHH-h-----hcee
Q 011842 355 WYTLNRKGY-------KGFQKEVQKCLRNAHYLKDRLLDA--GISAML-NELSSTVVFERPQ---DEEF-V-----RRWQ 415 (476)
Q Consensus 355 ~~~l~~~g~-------~g~~~~~~~~~~~a~~l~~~L~~~--g~~~~~-~~~~~iv~f~~~~---~~~~-~-----~~~~ 415 (476)
+++...+.. +.+++..++..++++++.+.|++. ++..+. +..++++.+..+. ..++ . ++..
T Consensus 301 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~ 380 (425)
T 2r2n_A 301 LMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVL 380 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEE
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcE
Confidence 333333321 234556677778889999999884 553333 3445666666553 2232 2 2233
Q ss_pred ec----c------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 416 LA----C------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 416 l~----~------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+. . ..+.+|++++. .|+++|+.+++.|.++.++.
T Consensus 381 v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 381 MLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp CEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred EechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 21 1 13689999873 69999999999999887653
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-23 Score=208.69 Aligned_cols=287 Identities=11% Similarity=0.021 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHHcCCC-CCcc-cEEEcCCchhHHHHHHHHHHhhCCC-----cEEEecCCCchHHHHHHHHcCCeEE
Q 011842 137 SRQFEVGVLDWFARLWELE-NNEY-WGYITNCGTEGNLHGILVGREVFPD-----GILYASRESHYSVFKAARMYRMECV 209 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~-~~~~-~g~~t~ggt~An~~al~aa~~~~p~-----~~Vl~s~~~H~S~~~~~~~~G~~v~ 209 (476)
..++++++.+++.+.+|.+ .+.. .+++|+|+++|+..++.+++. ++ +.|+++.++|.++...++.+|++++
T Consensus 68 ~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~--~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~ 145 (396)
T 3jtx_A 68 LPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN--PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIH 145 (396)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC--C---CCCCEEEEEESCCHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC--CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEE
Confidence 3589999999999999975 2334 699999999999999988865 64 7999999999999999999999999
Q ss_pred EEeCCCCC-ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCH---HHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 210 KVDCLISG-EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDL---DLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 210 ~v~~~~~g-~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l---~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
.+|+++++ .+|+++|++++.+++ .+|+++++.|++|.+.|. ++|+++|++||+ ++++|++|+.+....
T Consensus 146 ~v~~~~~g~~~d~~~l~~~~~~~~---~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~ 217 (396)
T 3jtx_A 146 FANCPAPSFNPDWRSISEEVWKRT---KLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGF-----IIASDECYSEIYFDG 217 (396)
T ss_dssp EEECCTTTCCCCGGGSCHHHHHTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCC-----EEEEECTTTTCCSTT
T ss_pred EeecCCCCCccCHHHHHHhhccCc---EEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEEccccccccCC
Confidence 99996544 689999999998754 377778999999999765 459999999999 999999998765432
Q ss_pred cccCCCCC------CcccccEEEEcCCCC-CCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 286 VKKAPKVS------FKKPIGSVSVSGHKF-VGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 286 ~~~~~~~~------~~~~~Dsi~~s~hK~-l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
....+... .....+++..+++|. +..++++|+++.++++++.+.....+. .++.+ .+.++++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~a~~ 287 (396)
T 3jtx_A 218 NKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYH-------GSAMS---IPVQRASI 287 (396)
T ss_dssp CCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHH-------TCCCC---HHHHHHHH
T ss_pred CCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhc-------ccCCC---HHHHHHHH
Confidence 11111000 012356788899995 556789999999887766553221111 11111 23333333
Q ss_pred HHhC-hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh----h--ceeec------------
Q 011842 359 NRKG-YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV----R--RWQLA------------ 417 (476)
Q Consensus 359 ~~~g-~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~----~--~~~l~------------ 417 (476)
..+. .+.+++..++..++++++.+.|++. +....+....++.+..+. ..++. + +..+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 366 (396)
T 3jtx_A 288 AAWDDEQHVIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQG 366 (396)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCccccc
Confidence 3332 3457778888888999999999875 222233345566666653 22221 2 33331
Q ss_pred -ccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 -CQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 -~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
...+.+|+++.. |+++|+.+++.|.++
T Consensus 367 ~~~~~~iRis~~~--~~~~i~~~l~~l~~~ 394 (396)
T 3jtx_A 367 NPGEGYVRIALVA--DVATCVKAAEDIVSL 394 (396)
T ss_dssp CTTTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 124789998764 999999999999875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=212.04 Aligned_cols=292 Identities=10% Similarity=0.057 Sum_probs=207.1
Q ss_pred hHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-HHcCCeEEEEeC
Q 011842 137 SRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-RMYRMECVKVDC 213 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~~~G~~v~~v~~ 213 (476)
..++++++.+++.+.+|.. .+...+++|+|+++++..++.+++. ||+.|++++++|.++...+ ...|++++.+|.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~ 162 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHC 162 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEECC
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC--CCCeEEEccCCCcchHHHHHHhcCCEEEEeec
Confidence 5699999999999888843 2234589999999999999988865 8999999999999987755 467999999998
Q ss_pred CC--CCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 214 LI--SGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 214 ~~--~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+. ++.+|+++|++++++ ...++.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+++.+..
T Consensus 163 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~Dea~~~~~~~~ 237 (428)
T 1iay_A 163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNI-----HLVCDEIYAATVFDT 237 (428)
T ss_dssp CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-----EEEEECTTGGGCCSS
T ss_pred CCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCe-----EEEEeccccccccCC
Confidence 73 357899999999975 2223557788899999999999 9999999999999 999999998754421
Q ss_pred cccCCCCCCccc-------cc--EEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 286 VKKAPKVSFKKP-------IG--SVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 286 ~~~~~~~~~~~~-------~D--si~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
....+....... .| ++..++||+++ .++++|+++++ +++++.+.....+ .+. ..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~ 305 (428)
T 1iay_A 238 PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF---------GLV---STQTQ 305 (428)
T ss_dssp SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT---------SCC---CHHHH
T ss_pred CCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc---------ccC---CHHHH
Confidence 111110111111 46 67889999997 66789999994 5565544321111 111 13444
Q ss_pred HHHHHHhChh-----cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--------c-HHH----h-h-ce
Q 011842 355 WYTLNRKGYK-----GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--------D-EEF----V-R-RW 414 (476)
Q Consensus 355 ~~~l~~~g~~-----g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--------~-~~~----~-~-~~ 414 (476)
.++...+... .+++..++..+++++|.+.|++.|+....++..+++.+..+. . .++ . + +.
T Consensus 306 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi 385 (428)
T 1iay_A 306 YFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKL 385 (428)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCE
Confidence 4455544322 356677888889999999999987644333355666666542 1 122 2 2 33
Q ss_pred eecc-c------CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 415 QLAC-Q------GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 415 ~l~~-~------~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+.. . .+.+|+++. .+|++++++++++|+++.+
T Consensus 386 ~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 386 NVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp ECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred EEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 3321 1 368999997 6899999999999988764
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=220.06 Aligned_cols=297 Identities=12% Similarity=0.063 Sum_probs=200.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH--------HHHHcC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--------AARMYR- 205 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~--------~~~~~G- 205 (476)
...++|+.+++++++++|+++++ ...+++++|+.+|+.++.+..+ |||.|++++++|.++.. .+++.|
T Consensus 87 ~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~--pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~ 164 (483)
T 1rv3_A 87 HIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKISATSI 164 (483)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcC--CCCEEEEecCccCcCcchhhhhcccCcccccc
Confidence 45789999999999999998532 0124444555888888887755 99999999999877643 334445
Q ss_pred -CeEEEEeCC-CCCccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 206 -MECVKVDCL-ISGEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 206 -~~v~~v~~~-~~g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
++++.++++ +++.+|+++|++++. .+++ +|++ ++++++ .+.|+++|.++|++||+ ++++|++|+.+.
T Consensus 165 ~~~~v~~~~~~~~~~iD~d~le~~i~~~~tk---lIi~-~~sn~~-~~~dl~~i~~ia~~~g~-----~livD~ah~~g~ 234 (483)
T 1rv3_A 165 FFESMAYKVNPDTGYIDYDRLEENARLFHPK---LIIA-GTSCYS-RNLDYGRLRKIADENGA-----YLMADMAHISGL 234 (483)
T ss_dssp HSEEEEECBCTTTCSBCHHHHHHHHHHHCCS---EEEE-CCSSCC-SCCCHHHHHHHHHHTTC-----EEEEECTTTHHH
T ss_pred eEEEEECccccCCCcCCHHHHHHHHhhcCCc---EEEE-eCCcCC-CcCCHHHHHHHHHHcCC-----EEEEEccchhcc
Confidence 345555556 568899999999998 5555 7777 677777 88999999999999999 999999997554
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC----Cccc-----cCCC-CCcccCCCCChhHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS----NVEY-----LASR-DATIMGSRNGHAPI 352 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~----~~~y-----l~~~-~~~~~~sr~~~~~l 352 (476)
.+...+...+ ..+|++++++||++.+|.+ |+++++++... +.. ...| +... .....++.......
T Consensus 235 ~~~~~~~~p~---~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~ia 309 (483)
T 1rv3_A 235 VVAGVVPSPF---EHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIA 309 (483)
T ss_dssp HHHTSSCCGG---GTCSEEEEESSGGGCCCSC-EEEEEECSBCC--------CCBCCHHHHHHHHHTTTTCCSCCHHHHH
T ss_pred cccCCCCCCC---CCCcEEEecCcccCCCCCc-eEEEEcchhhh-hccccCcchhhHHHHHhhhhcCCcccCCccHHHHH
Confidence 4322221111 2489999999999986665 99999976321 000 0000 0000 01113444333344
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecC----CcHHHh---h--ceeec----c
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERP----QDEEFV---R--RWQLA----C 418 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~----~~~~~~---~--~~~l~----~ 418 (476)
++.++++.....+++++.++..++++++.+.|++.|+..+.+.. ...+.+... ...++. + ++.+. .
T Consensus 310 al~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~p 389 (483)
T 1rv3_A 310 GVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCP 389 (483)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCS
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCC
Confidence 55667776666678999999999999999999999876554322 234444432 222221 1 22222 1
Q ss_pred ------cCCEEEEEEcCCCC----HHHHHHHHHHHHHHHHH
Q 011842 419 ------QGNIAHVVVMPNVT----IDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ------~~~~lRv~~~~~~T----~edid~~~~~l~~~~~~ 449 (476)
..+.+|+++...+| ++|++++++.|.++.+.
T Consensus 390 g~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 390 GDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp SCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 13589999876666 99999999999998765
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=212.82 Aligned_cols=298 Identities=11% Similarity=-0.000 Sum_probs=204.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
+..++++++.+++.+..+.+. ...+++|+||++|+..++.+..+ ||+.|+++.++|.++...++..|++++.+|++
T Consensus 81 g~~~lr~~ia~~~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 81 GIPDFLCAAEKECFGNFRPEG-HIRSIATAGGTGGIHHLIHNYTE--PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFD 157 (418)
T ss_dssp CCHHHHHHHHHHHHGGGCCSS-EEEEEEESHHHHHHHHHHHHHSC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBC
T ss_pred ChHHHHHHHHHHHhcccCccc-cccEEECCchHHHHHHHHHHhcC--CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeC
Confidence 457899999999877766542 23599999999999999988765 89999999999999999999999999999985
Q ss_pred CCCccCHHHHHHHHHc----CCCCcEEEEEeeC-CCccccccCHHH---HHHHHH------HhCCCCCceEEEEecCccc
Q 011842 215 ISGEIDCADFKAKLLQ----NKDKPAIINVNIG-TTVKGAVDDLDL---VIQTLE------ESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~----~~~~p~~vv~t~g-tt~tG~id~l~~---I~~ia~------~~g~~~~~~~lhvD~a~~g 280 (476)
+++.+|+++|++++.+ +++ .+++++++ .|+||.+.|.++ |+++|+ +||+ ++++|++|.+
T Consensus 158 ~~~~~d~~~l~~~l~~~~~~~~~--~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~-----~li~De~y~~ 230 (418)
T 3rq1_A 158 EHNNFNHEAFQNRVNELAAKQTN--VVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNV-----IIGIDVAYLD 230 (418)
T ss_dssp TTSSBCHHHHHHHHHHHHHHCSE--EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEE-----EEEEECTTGG
T ss_pred CCCCcCHHHHHHHHHHhhccCCC--EEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCe-----EEEEeccccc
Confidence 5578999999999975 332 37778888 899999987555 455555 8899 9999999976
Q ss_pred ccccccccCCC---CC-Ccccc-cEEEEcCCCCCC-CCCCceeEEe---ehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 281 LMMPFVKKAPK---VS-FKKPI-GSVSVSGHKFVG-CPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 281 ~~~~~~~~~~~---~~-~~~~~-Dsi~~s~hK~l~-~p~~~G~l~~---~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+........+. .. ..+.. .+++.|++|.++ .++++|++++ ++++++.+.....+.... ..+ ....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~ 304 (418)
T 3rq1_A 231 YSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRA----TWS--NICR 304 (418)
T ss_dssp GSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHH----HTS--SCCH
T ss_pred ccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhh----ccC--CCch
Confidence 65432111110 11 11111 266779999886 6799999998 666665553222221100 001 1123
Q ss_pred HHHHHHHHHhChh--------cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeecc
Q 011842 352 IFLWYTLNRKGYK--------GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLAC 418 (476)
Q Consensus 352 l~~~~~l~~~g~~--------g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~ 418 (476)
+.+.++...+... ..+++.++..++++++.+.|++.|+....+....++++..++..++. +++.+..
T Consensus 305 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 384 (418)
T 3rq1_A 305 PAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDSANAICEELKKEHIYVIA 384 (418)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEec
Confidence 4444444444221 23355677788889999999988765443333334444454444333 2334445
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++.+|+++. .+|+++|+++++.|+++.+++
T Consensus 385 g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 385 LANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp CSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred CCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 5678999965 579999999999999988764
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=205.69 Aligned_cols=272 Identities=13% Similarity=0.111 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDC 213 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~ 213 (476)
.....++++++++++|.+ ..+++++|++|+..++.++.. |++.|+++++.|.++...+ +..|++++.++.
T Consensus 63 ~~~~~~l~~~la~~~g~~----~~i~~~sG~~a~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 136 (398)
T 2rfv_A 63 NPTTDALEKKLAVLERGE----AGLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA 136 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhC--CCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 366778888999999986 267788889999999988765 8999999999999988776 778999999997
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+ |+++|++++.+++ .+|++++++|++|.+.|+++|+++|++||+ ++|+|++|+.+.++. . +.
T Consensus 137 ~-----d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~De~~~~~~~~~--~---~~ 198 (398)
T 2rfv_A 137 A-----KPEEIRAAMRPET---KVVYIETPANPTLSLVDIETVAGIAHQQGA-----LLVVDNTFMSPYCQQ--P---LQ 198 (398)
T ss_dssp T-----SHHHHHHHCCTTE---EEEEEESSBTTTTBCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTCC--G---GG
T ss_pred C-----CHHHHHHhcCCCC---eEEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCCcccccCC--c---hh
Confidence 5 8999999987543 488889999999999999999999999999 999999998655431 0 11
Q ss_pred CcccccEEEEcCCCCCCCCCC--ceeEEeehhhhh-hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCPMP--CGVQITRMEHIN-VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~-~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
..+|+++.++||+++.|.. +|+++++++.++ .+........ .++ ...+.+|++++.+ +.+..++
T Consensus 199 --~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~l--~~~~~~~ 265 (398)
T 2rfv_A 199 --LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDIT------GGC---MSPFNAWLTLRGV--KTLGIRM 265 (398)
T ss_dssp --GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTT------CCC---CCHHHHHHHHHHH--TTHHHHH
T ss_pred --hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCC------CCC---CCHHHHHHHHhhh--hhHHHHH
Confidence 2379999999999876554 499999987664 3321111100 111 1245666666655 3456667
Q ss_pred HHHHHHHHHHHHHHHhcCCeE-e-------------ec----CCeeEEEEecCCc----HHHhhcee---e--c------
Q 011842 371 QKCLRNAHYLKDRLLDAGISA-M-------------LN----ELSSTVVFERPQD----EEFVRRWQ---L--A------ 417 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~-~-------------~~----~~~~iv~f~~~~~----~~~~~~~~---l--~------ 417 (476)
++..++++++.+.|++.+... + .. ...+++.|..++. ..+.+.+. + .
T Consensus 266 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~ 345 (398)
T 2rfv_A 266 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTET 345 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSC
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcce
Confidence 777888888999988764211 1 01 1357788877642 12333221 1 0
Q ss_pred ----c----------------c--CCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 ----C----------------Q--GNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 ----~----------------~--~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
| . .+.+|+++...+|+++|++++++|+++
T Consensus 346 li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 346 LIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp EEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 0 0 478999999999999999999999764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=206.65 Aligned_cols=295 Identities=11% Similarity=0.026 Sum_probs=208.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-C
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-I 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~ 215 (476)
..++++++.+++.+.+|.+.+...+++|+||++|+..++.++.. |++.|+++.++|.++...++..|++++.+|++ +
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 145 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEK 145 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHhHHHHHHHcCCEEEecccccC
Confidence 46899999999999888554445699999999999999988765 88999999999999999999999999999985 3
Q ss_pred CC--ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 SG--EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 ~g--~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+| .+|+++|++++.+. ++.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+++.+......+
T Consensus 146 ~g~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 146 DGYYTIDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-----MLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp TTEEECCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-----EEEEECTTTTCBCTTCCCCC
T ss_pred CCCEEEcHHHHHHHhccC--CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCC-----EEEEEccccccccCCCCccc
Confidence 33 59999999999732 2347777899999999988 9999999999999 99999999876543211111
Q ss_pred CCCCcc---cccEEEEcCCCCCC-CCCCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Ch
Q 011842 291 KVSFKK---PIGSVSVSGHKFVG-CPMPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GY 363 (476)
Q Consensus 291 ~~~~~~---~~Dsi~~s~hK~l~-~p~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~ 363 (476)
...+.. ..+++..+++|+++ .++++|++++++ ++++.+.....+. + .++.+ .+.++++...+ +.
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~-----~-~~~~~---~~~~~a~~~~l~~~~ 289 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDAT-----S-GMPFT---TLGYKACEICYKECG 289 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHT-----T-CCCCC---HHHHHHHHHHHHHCH
T ss_pred HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhc-----c-cCCCC---HHHHHHHHHHHhCCh
Confidence 112211 24577889999987 667899999975 4655543211111 0 01111 33344333333 34
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHh-cCCeEeecCCeeEE-EEecCC----cHHHhh------ceeecc-------cCCEEE
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLD-AGISAMLNELSSTV-VFERPQ----DEEFVR------RWQLAC-------QGNIAH 424 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~iv-~f~~~~----~~~~~~------~~~l~~-------~~~~lR 424 (476)
+.+++..++..++++++.+.|++ .+...+.++..+++ .+..+. ..++.+ ++.+.. ..+.+|
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 55777888889999999999998 53233334444444 455542 222221 333321 246899
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 425 v~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++++. ++++|+.+++.|.++.+++.
T Consensus 370 is~~~--~~~~l~~~l~~l~~~l~~~~ 394 (399)
T 1c7n_A 370 INLAA--PSSVIQESLERLNKALKDLK 394 (399)
T ss_dssp EECCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred EEecc--CHHHHHHHHHHHHHHHHHHH
Confidence 98874 48999999999999887764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=206.80 Aligned_cols=288 Identities=11% Similarity=-0.051 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCcc
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~ 219 (476)
..++++.+++++|.+ .+++|+|||+|+..++.+++. ..|++.|+++.++|.++..+++..|++++.+++++++.+
T Consensus 34 ~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 109 (375)
T 2fnu_A 34 SLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNI 109 (375)
T ss_dssp HHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSB
T ss_pred HHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCC
Confidence 345666677888876 399999999999999988731 238899999999999999999999999999999887889
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
|+++|++++.+++ .+|+++++ +|.+.|+++|.++|++||+ ++|+|++|+.+..+.... +.....++
T Consensus 110 d~~~l~~~i~~~~---~~v~~~~~---tG~~~~l~~i~~l~~~~~~-----~li~D~a~~~~~~~~~~~---~~~~~~i~ 175 (375)
T 2fnu_A 110 DELALEKLINERT---KAIVSVDY---AGKSVEVESVQKLCKKHSL-----SFLSDSSHALGSEYQNKK---VGGFALAS 175 (375)
T ss_dssp CGGGSGGGCCTTE---EEEEEECG---GGCCCCHHHHHHHHHHHTC-----EEEEECTTCTTCEETTEE---TTSSSSEE
T ss_pred CHHHHHhhcCcCc---eEEEEeCC---cCCccCHHHHHHHHHHcCC-----EEEEECccccCCeECCee---ccccCCeE
Confidence 9999999886543 36666665 8999999999999999999 999999998655432211 11111266
Q ss_pred EEEEcCCCCCCCCCCceeEEee--hhhhhhhcCCccccCC-C-CC----cccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 300 SVSVSGHKFVGCPMPCGVQITR--MEHINVLSSNVEYLAS-R-DA----TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 300 si~~s~hK~l~~p~~~G~l~~~--~~~~~~l~~~~~yl~~-~-~~----~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
+.++++||+++ | ++|+++++ +++.+.+.....+... . .. ...+.+.+...+..+.++. ..+++++..+
T Consensus 176 ~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~~~~ 251 (375)
T 2fnu_A 176 VFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS--QLKKAPFLMQ 251 (375)
T ss_dssp EEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH--HHTTHHHHHH
T ss_pred EEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHH--HHHHHHHHHH
Confidence 77788889995 5 78998884 3454443211110000 0 00 0011111222333333332 2467888999
Q ss_pred HHHHHHHHHHHHHHhcCCeEeecC-----Ce-eEEEEecC-----CcHHHh-----hceeec--c---------------
Q 011842 372 KCLRNAHYLKDRLLDAGISAMLNE-----LS-STVVFERP-----QDEEFV-----RRWQLA--C--------------- 418 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~~~~~-----~~-~iv~f~~~-----~~~~~~-----~~~~l~--~--------------- 418 (476)
+..++++++.+.|++.+...+..+ .. .++.+..+ ...++. +++.+. +
T Consensus 252 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~ 331 (375)
T 2fnu_A 252 KREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNT 331 (375)
T ss_dssp HHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCc
Confidence 999999999999999743333322 12 22233333 222222 222222 0
Q ss_pred ---------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 ---------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 ---------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|+++++.+|++||++++++|+++.+++
T Consensus 332 ~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 332 APLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp CCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 01579999999999999999999999987653
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.3e-23 Score=211.34 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
.++.+++++++++++|.+. .+++++||+|+..++.++ .. +++.|+++.++|.++..+++..|++++.+++++
T Consensus 41 ~~l~~~l~~~la~~~g~~~----~i~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 114 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVPY----CVPTTSGSTALMLALEALGIG--EGDEVIVPSLTWIATATAVLNVNALPVFVDVEAD 114 (418)
T ss_dssp CCHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCccHhHHHHHHHcCCEEEEEecCCC
Confidence 4667788888999999862 788889999999998887 43 889999999999999999999999999999986
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
++.+|+++|++++++++ .+|+++ +++|.+.|+++|.++|++||+ ++|+|++|+.+......... ..
T Consensus 115 ~~~~d~~~l~~~i~~~~---~~v~~~---~~~G~~~~~~~i~~~~~~~~~-----~li~D~a~~~~~~~~~~~~~--~~- 180 (418)
T 2c81_A 115 TYCIDPQLIKSAITDKT---KAIIPV---HLFGSMANMDEINEIAQEHNL-----FVIEDCAQSHGSVWNNQRAG--TI- 180 (418)
T ss_dssp TCSBCHHHHGGGCCTTE---EEECCB---CCTTCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEETTEETT--SS-
T ss_pred CCCcCHHHHHHhhCCCC---eEEEEe---CCcCCcccHHHHHHHHHHCCC-----EEEEECcccccCccCCEecc--cc-
Confidence 78899999999886543 366554 467999999999999999999 99999999876521111111 11
Q ss_pred ccccEEEEcCCCCCCCCCCceeEEee-hhhhhhhcCCcc---------------ccC-CCCCcccCCCCChhHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVE---------------YLA-SRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~---------------yl~-~~~~~~~~sr~~~~~l~~~~~l 358 (476)
..++++++++||+++.+ ++|+++++ +++.+.+..... |.. .....+.+.......+..+..+
T Consensus 181 ~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~ 259 (418)
T 2c81_A 181 GDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILL 259 (418)
T ss_dssp SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHH
T ss_pred cceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHH
Confidence 12566666779999874 88888885 455443321101 110 0000111111111122222222
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC-C----e-eEEEEecC-------CcHHH-----hh-cee---
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE-L----S-STVVFERP-------QDEEF-----VR-RWQ--- 415 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~-~----~-~iv~f~~~-------~~~~~-----~~-~~~--- 415 (476)
...+.+++..++..++++++.+.|++. ++....++ . . .++.+..+ +..++ .+ ++.
T Consensus 260 --~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~ 337 (418)
T 2c81_A 260 --DQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFY 337 (418)
T ss_dssp --HHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccc
Confidence 223567888888899999999999887 44333223 2 1 24445544 22222 12 333
Q ss_pred ecc--------------------------------c---------CCEEEEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 011842 416 LAC--------------------------------Q---------GNIAHVVVMPNV-TIDKLDDFLNELIENRST 449 (476)
Q Consensus 416 l~~--------------------------------~---------~~~lRv~~~~~~-T~edid~~~~~l~~~~~~ 449 (476)
+.. . .+.+|+++++.+ |++|||+++++|+++.++
T Consensus 338 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 338 LHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp EECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 210 0 147999999999 999999999999988754
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=207.33 Aligned_cols=297 Identities=11% Similarity=0.049 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHHHH------cCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEE
Q 011842 137 SRQFEVGVLDWFARL------WELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 137 ~~~le~~~~~~la~l------~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
..++++++.+++.+. .|++.+...+++|+|+|+|+..++.++.. |++.|+++.++|.++..+++..|++++.
T Consensus 77 ~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~ 154 (416)
T 1bw0_A 77 SPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHF 154 (416)
T ss_dssp CHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC--CCCEEEEcCCCcHhHHHHHHHcCcEEEE
Confidence 458888888888742 34333344699999999999999888755 8999999999999999999999999999
Q ss_pred EeCCCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCLIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+|++++ +.+|+++|++++.+++ .+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.+..
T Consensus 155 v~~~~~~~~~~d~~~l~~~l~~~~---~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~g 226 (416)
T 1bw0_A 155 YNCRPENDWEADLDEIRRLKDDKT---KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL-----PLFSDEIYAGMVFKG 226 (416)
T ss_dssp EEEEGGGTTEECHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----CEEEECTTTTCBCCS
T ss_pred eecCcccCCCCCHHHHHHHhccCC---eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCC-----EEEEEccccccccCC
Confidence 998643 6799999999986543 47778889999999988 9999999999999 999999998755432
Q ss_pred c----ccCCCCCCccc-ccEEEEcCCCCCC-CCCCceeEEeehh--hhhhhcCC-ccccCCCCCcccCCCCChhHHHHHH
Q 011842 286 V----KKAPKVSFKKP-IGSVSVSGHKFVG-CPMPCGVQITRME--HINVLSSN-VEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 286 ~----~~~~~~~~~~~-~Dsi~~s~hK~l~-~p~~~G~l~~~~~--~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
. ...+...+... .++++.+++|+++ .++++|+++++++ +++.+... ..+. ...++.+......+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~~~ 301 (416)
T 1bw0_A 227 KDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-----MLVCGPCTVVQAALGE 301 (416)
T ss_dssp SCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-----HHHTCSCHHHHHHHHH
T ss_pred CCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-----ccccCCCcHHHHHHHH
Confidence 2 11111122122 2466778999975 4578999999874 33222100 0000 0011222122222333
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecC--------CcHHHh------hceeecc---
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERP--------QDEEFV------RRWQLAC--- 418 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~--------~~~~~~------~~~~l~~--- 418 (476)
+++....+.+++..++..++++++.+.|++. ++....+..++.+.+..+ +..++. +++.+..
T Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 381 (416)
T 1bw0_A 302 ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTI 381 (416)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGG
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccc
Confidence 3433335567888899999999999999987 443333334555555543 122222 2333321
Q ss_pred --cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 --~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|+++. +++++|+..++.|.++.++.
T Consensus 382 f~~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 382 FHAPGFTRLTTT--RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp GTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 1468999884 78999999999999887653
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=212.37 Aligned_cols=325 Identities=10% Similarity=-0.061 Sum_probs=219.0
Q ss_pred chHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-hhCCCcEE
Q 011842 109 DYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EVFPDGIL 187 (476)
Q Consensus 109 ~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-~~~p~~~V 187 (476)
+...+..+.....+..+.....+....+..++++++.+++.+..|.+.+...+++|+|+++++..++.+.. . +++.|
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~V 185 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN--EKDGI 185 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS--TTEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC--CCCEE
Confidence 33455555443333323122223333467899999999999988876555679999999999999988875 4 89999
Q ss_pred EecCCCchHHHHHHHHcCCeEEEEeCCCC--CccCHHHHHHHHHcC---CCCcEEEEEeeCCCcccccc---CHHHHHHH
Q 011842 188 YASRESHYSVFKAARMYRMECVKVDCLIS--GEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVD---DLDLVIQT 259 (476)
Q Consensus 188 l~s~~~H~S~~~~~~~~G~~v~~v~~~~~--g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id---~l~~I~~i 259 (476)
+++.++|.++..+++.+|++++.++++++ +.+|+++|+++|++. ..++.+|++++++|+||.+- ++++|+++
T Consensus 186 lv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~l 265 (500)
T 3tcm_A 186 LVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKF 265 (500)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHH
Confidence 99999999999999999999999998754 589999999999862 22345777889999999994 47788888
Q ss_pred HHHhCCCCCceEEEEecCccccccccc-ccCCCC----CC---ccccc-EEEEcCCCCC-C-CCCCceeEEe---ehhhh
Q 011842 260 LEESGFTQDRFYIHCDGALFGLMMPFV-KKAPKV----SF---KKPIG-SVSVSGHKFV-G-CPMPCGVQIT---RMEHI 325 (476)
Q Consensus 260 a~~~g~~~~~~~lhvD~a~~g~~~~~~-~~~~~~----~~---~~~~D-si~~s~hK~l-~-~p~~~G~l~~---~~~~~ 325 (476)
|++||+ ++++|++|+.+.+... ...+.. ++ ...+. ++..|++|.+ + +++++|++++ +++++
T Consensus 266 a~~~~~-----~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 340 (500)
T 3tcm_A 266 CKNEGL-----VLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR 340 (500)
T ss_dssp HHHHTC-----EEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred HHHcCC-----EEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence 999999 9999999987665321 111100 01 11233 4456899987 2 5788999998 66665
Q ss_pred hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC------------hhcHHHHHHHHHHHHHHHHHHHHhcCCeEee
Q 011842 326 NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG------------YKGFQKEVQKCLRNAHYLKDRLLDAGISAML 393 (476)
Q Consensus 326 ~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g------------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~ 393 (476)
+.+...... ..+. ..+.++++...+. .+..+++.+++.+++++|.+.|++.+...+.
T Consensus 341 ~~l~~~~~~--------~~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 409 (500)
T 3tcm_A 341 EQIYKIASV--------NLCS---NITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN 409 (500)
T ss_dssp HHHHHHHHT--------TCCC---CHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred HHHHHHHhc--------ccCC---CHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe
Confidence 554321111 0111 1233333333321 1234566778888999999999998434444
Q ss_pred cCCeeEEEE---ecCCc-------------H----HHh--hceeec--------ccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 394 NELSSTVVF---ERPQD-------------E----EFV--RRWQLA--------CQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 394 ~~~~~iv~f---~~~~~-------------~----~~~--~~~~l~--------~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
++..++++| ..|.. . .+. .+..+. .....+|+++. +++++|+.+++.|
T Consensus 410 ~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l 487 (500)
T 3tcm_A 410 EAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRF 487 (500)
T ss_dssp CCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHH
T ss_pred cCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHH
Confidence 555544444 22211 1 111 123332 12357999988 8999999999999
Q ss_pred HHHHHHHHhc
Q 011842 444 IENRSTWYED 453 (476)
Q Consensus 444 ~~~~~~~~~~ 453 (476)
.++.+++++.
T Consensus 488 ~~~~~~~~~~ 497 (500)
T 3tcm_A 488 TVFHEAFMSE 497 (500)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=205.88 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGE 218 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~ 218 (476)
+...++++.+++++|.+ ...++|+ |+++|..++.++....|++.|+++.++|.++...++..|++++.+|.+
T Consensus 91 ~~~~~l~~~la~~~~~~---~~i~~~s-G~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~---- 162 (401)
T 2bwn_A 91 AYHRRLEAEIAGLHQKE---AALVFSS-AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN---- 162 (401)
T ss_dssp HHHHHHHHHHHHHTTCS---EEEEESC-HHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT----
T ss_pred HHHHHHHHHHHHHhCCC---cEEEECC-cHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC----
Confidence 34455667778888864 2355654 555888887765433489999999999999999999999999999975
Q ss_pred cCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccC-CCCCCc
Q 011842 219 IDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKA-PKVSFK 295 (476)
Q Consensus 219 ~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~-~~~~~~ 295 (476)
|+++|++.+++.. .++.+|+++++++++|.+.|+++|.++|++||+ ++++|++|+.+.+ +..... ......
T Consensus 163 -d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~g~~~~~~~~~~ 236 (401)
T 2bwn_A 163 -DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGA-----LTYIDEVHAVGMYGPRGAGVAERDGLM 236 (401)
T ss_dssp -CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSSTTSCCHHHHHTCG
T ss_pred -CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCC-----EEEEeccccccccCCCCceeeeccCcc
Confidence 8999999998543 245688899999999999999999999999999 9999999984432 211110 001112
Q ss_pred ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+..|.+..+++|+++.|. |+++.++++.+.+.. ...|... .++.+ .....+.++++.+...++++..++..
T Consensus 237 ~~~~i~~~s~sK~~~~~G--G~~~~~~~~~~~l~~~~~~~~~~-----~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~ 308 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGVFG--GYIAASARMVDAVRSYAPGFIFS-----TSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQ 308 (401)
T ss_dssp GGCSEEEEESSSTTCSCC--EEEEECHHHHHHHHHHCHHHHTS-----BCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccCCC--CEEecCHHHHHHHHHhCcCceec-----CCCCH-HHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 236888899999998532 888888766554432 1112111 11111 23344456666665556788899999
Q ss_pred HHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHh------hceeecc--------cCCEEEEEEcCCCCHHHHH
Q 011842 375 RNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFV------RRWQLAC--------QGNIAHVVVMPNVTIDKLD 437 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~------~~~~l~~--------~~~~lRv~~~~~~T~edid 437 (476)
++++++.+.|++.|+... ++.++++.|..+.. .++. +++.+.. ..+.+|++++..+|++||+
T Consensus 309 ~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~ 387 (401)
T 2bwn_A 309 MHAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQID 387 (401)
T ss_dssp HHHHHHHHHHHHHTCCBC-CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHCCCccc-CCCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHH
Confidence 999999999998876443 44456777777641 2221 2333321 1258999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011842 438 DFLNELIENRST 449 (476)
Q Consensus 438 ~~~~~l~~~~~~ 449 (476)
+++++|+++.++
T Consensus 388 ~~~~~l~~~~~~ 399 (401)
T 2bwn_A 388 GLVHAMDLLWAR 399 (401)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-22 Score=203.14 Aligned_cols=292 Identities=12% Similarity=0.037 Sum_probs=203.9
Q ss_pred HH-HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 138 RQ-FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 138 ~~-le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
.+ +++++.+++.+.+|.+.+...+++|+|+++|+..++.++.. |++.|+++.++|.++...++..|++++.+|++.+
T Consensus 66 ~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 143 (390)
T 1d2f_A 66 NDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQ 143 (390)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEEC
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccC
Confidence 37 99999999999888554445699999999999999888764 8899999999999999999999999999998643
Q ss_pred ---CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 217 ---GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 217 ---g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.+|+++|++++.+. ++.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+........+
T Consensus 144 ~~~~~~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g~~~~~ 216 (390)
T 1d2f_A 144 ADGWFCDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV-----RVISDEIHMDMVWGEQPHIP 216 (390)
T ss_dssp SSSEECCHHHHHHHHTST--TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTC-----EEEEECTTTTCBCSSSCCCC
T ss_pred CCccccCHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCC-----EEEEEccccccccCCCCCcC
Confidence 259999999999752 2447777889999999976 8999999999999 99999999876543211111
Q ss_pred CCCCccc-ccEEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 291 KVSFKKP-IGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
....... .|. ..+++|+++ .++++|+++++ +++.+.+...... . .++ ++.+ .+.++++...+ +.+.
T Consensus 217 ~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~---~~~~~a~~~~l~~~~~~ 287 (390)
T 1d2f_A 217 WSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKG--R--DGL-SSPS---VLALTAHIAAYQQGAPW 287 (390)
T ss_dssp GGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHT--T--SCC-CSCC---HHHHHHHHHHHHHCHHH
T ss_pred HHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhh--h--ccc-CCCC---HHHHHHHHHHHhcCHHH
Confidence 1112112 266 889999997 67789999986 4555544221110 0 001 1111 23333333332 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-c-CCeEeecCCeeEE-EEecCC----cHHH----h--hceeecc-------cCCEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLD-A-GISAMLNELSSTV-VFERPQ----DEEF----V--RRWQLAC-------QGNIAHV 425 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~-~-g~~~~~~~~~~iv-~f~~~~----~~~~----~--~~~~l~~-------~~~~lRv 425 (476)
+++..++..++++++.+.|++ . ++. +.++..+++ .+..+. ..++ . ++..+.. ..+.+|+
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ri 366 (390)
T 1d2f_A 288 LDALRIYLKDNLTYIADKMNAAFPELN-WQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRL 366 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCC-CCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCE-EecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEE
Confidence 677788888999999999988 5 443 334444443 455432 2222 2 1333321 2468999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.. ++++|+.+++.|.++.+++
T Consensus 367 s~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 367 NAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp ECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred EecC--CHHHHHHHHHHHHHHHHhh
Confidence 8875 5899999999998887653
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-23 Score=207.56 Aligned_cols=285 Identities=13% Similarity=0.017 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCcc
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~ 219 (476)
..++++.+++++|.+ .+++|+|||+|+..++.++ .. +++.|+++.++|.++..+++..|++++.++++.++.+
T Consensus 40 ~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (374)
T 3uwc_A 40 LEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIG--AGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVI 113 (374)
T ss_dssp HHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSB
T ss_pred HHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCc
Confidence 345556677788876 3899999999999888877 43 8999999999999999999999999999999878899
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
|+++|++++.+++ .+|+ +++++|.+.|+++|.++|++||+ ++|+|++|+.+........ ....|
T Consensus 114 d~~~l~~~~~~~~---~~v~---~~n~~G~~~~~~~i~~~~~~~~~-----~li~D~~~~~g~~~~~~~~-----~~~~d 177 (374)
T 3uwc_A 114 DPEKIEAAITDKT---KAIM---PVHYTGNIADMPALAKIAKKHNL-----HIVEDACQTILGRINDKFV-----GSWGQ 177 (374)
T ss_dssp CGGGTGGGCCTTE---EEEC---CBCGGGCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEETTEET-----TSSSS
T ss_pred CHHHHHHhCCCCc---eEEE---EeCCcCCcCCHHHHHHHHHHcCC-----EEEEeCCCccCceeCCeec-----ccccc
Confidence 9999999887643 3454 67789999999999999999999 9999999985433211111 11258
Q ss_pred EEEEcCC--CCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCc--ccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 300 SVSVSGH--KFVGCPMPCGVQITRME-HINVLSSNVEYLASRDAT--IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 300 si~~s~h--K~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~--~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
+++.++| |+++++..+|+++++++ +.+.+.....+-...... ..+.......+ .+++.....+++++..++..
T Consensus 178 ~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~aa~~~~~~~~~~~~~~~~~ 255 (374)
T 3uwc_A 178 FACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTI--QAVIANRLMNQLETITEKRR 255 (374)
T ss_dssp EEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHH--HHHHHHHHGGGHHHHHHHHH
T ss_pred EEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999977 99986344778877764 433321111100000000 00111111122 23333333567888899999
Q ss_pred HHHHHHHHHHHhcCC-eEee-cC-Ce--e--EEEEecCCcHHHh-----hceeeccc-----------------------
Q 011842 375 RNAHYLKDRLLDAGI-SAML-NE-LS--S--TVVFERPQDEEFV-----RRWQLACQ----------------------- 419 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~-~~~~-~~-~~--~--iv~f~~~~~~~~~-----~~~~l~~~----------------------- 419 (476)
++++++.+.|++.+. ..+. .+ .. + .+.+..++...+. +++.+...
T Consensus 256 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (374)
T 3uwc_A 256 GIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPM 335 (374)
T ss_dssp HHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHH
T ss_pred HHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCcc
Confidence 999999999998874 3332 12 11 1 1222333333322 12221110
Q ss_pred -----CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 420 -----GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 420 -----~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
...+|+++++.+|++|||+++++|+++.++
T Consensus 336 ~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 336 AEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 167999999999999999999999988754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=210.40 Aligned_cols=295 Identities=13% Similarity=0.062 Sum_probs=206.4
Q ss_pred hhHHHHHHHHHHHHHHcC--CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH-HcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWE--LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-MYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g--~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~-~~G~~v~~v~ 212 (476)
+..++++++.+++.+..| .+.+...+++|+||++||..++.+++. |++.|++++++|.++...++ ..|++++.++
T Consensus 87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~--~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~ 164 (435)
T 3piu_A 87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 164 (435)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcC--CCCeEEECCCccccHHHHHHHhcCCEEEEee
Confidence 346899999999987766 222334699999999999999988866 89999999999999998888 7899999999
Q ss_pred CCCC--CccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CLIS--GEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~~~--g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
++++ +.+|+++|+++|++. ..++.+|+++++++++|.+.+ +++|+++|++||+ ++++|++|+++.+.
T Consensus 165 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~Dea~~~~~~~ 239 (435)
T 3piu_A 165 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGI-----HLISDEIYSGTAFS 239 (435)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGGGCCS
T ss_pred CCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEeccccccccC
Confidence 9753 458999999999762 224557888899999999854 6889999999999 99999999876543
Q ss_pred ccccCCCCCCc-----------ccccEEEEcCCCCCC-CCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 285 FVKKAPKVSFK-----------KPIGSVSVSGHKFVG-CPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 285 ~~~~~~~~~~~-----------~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
.....+..... ...+++..+++|+++ .++++|+++++++ +.+.+.....+. ..+ .
T Consensus 240 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~-------~~~-----~ 307 (435)
T 3piu_A 240 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFG-------LVS-----S 307 (435)
T ss_dssp SSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGS-------CCC-----H
T ss_pred CCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcC-------CCC-----H
Confidence 21111100100 112377889999997 7789999999654 444442222221 111 2
Q ss_pred HHHHHHHHHhC-----hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--------c-HHH----hh-
Q 011842 352 IFLWYTLNRKG-----YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--------D-EEF----VR- 412 (476)
Q Consensus 352 l~~~~~l~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--------~-~~~----~~- 412 (476)
+.+.++...+. .+.+++..++..+++++|.+.|++.|+....+...+++.+..+. . .++ .+
T Consensus 308 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 387 (435)
T 3piu_A 308 QTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYE 387 (435)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHH
Confidence 22222222221 22346677888889999999999988755444444666666543 1 122 12
Q ss_pred -ceeec-------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 413 -RWQLA-------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 413 -~~~l~-------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.+. ...+++|+++... |+++|+.+++.|.++.+++
T Consensus 388 ~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 388 VHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp SCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHH
Confidence 34332 1247899998544 9999999999999988765
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-22 Score=201.78 Aligned_cols=226 Identities=16% Similarity=0.095 Sum_probs=161.6
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D 220 (476)
.++++.+++++|.+ .+++|+|||+|+..++.++ .. +++.|+++.++|.++..+++..|++++.+++++++.+|
T Consensus 35 ~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~l~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d 108 (394)
T 1o69_A 35 NRFEQSVKDYSKSE----NALALNSATAALHLALRVAGVK--QDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNID 108 (394)
T ss_dssp HHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBC
T ss_pred HHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcC
Confidence 34555566677763 3899999999999999887 43 88999999999999999999999999999998788999
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
+++|+++|++...++.+|++++ ++|...|+++|.++|++||+ ++++|++|+.+..+...... .+ ..+|+
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~~~~~--~~-~~~~~ 177 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDI-----VLIEDAAEALGSFYKNKALG--TF-GEFGV 177 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEETTEETT--SS-SSEEE
T ss_pred HHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCC-----EEEEECcCcccceeCCcccc--cc-cCcEE
Confidence 9999999987311223666654 78999999999999999999 99999999833322222111 11 13789
Q ss_pred EEEcCCCCCCCCCCceeEEee-hhhhhhhcCCccccCCCC----CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 301 VSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRD----ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 301 i~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~----~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
++++.||+++ |.++|+++++ +++++.+.....+..... ....+.+.+...+....++.. .+.+++.+++..+
T Consensus 178 ~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--l~~l~~~~~~~~~ 254 (394)
T 1o69_A 178 YSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQ--MEVLEQRVLKKRE 254 (394)
T ss_dssp EECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHH--HTTHHHHHHHHHH
T ss_pred EEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999887 7899999996 565554422111111000 011122222233444344333 2457778899999
Q ss_pred HHHHHHHHHHhc
Q 011842 376 NAHYLKDRLLDA 387 (476)
Q Consensus 376 ~a~~l~~~L~~~ 387 (476)
+++++.+.|++.
T Consensus 255 ~~~~l~~~L~~~ 266 (394)
T 1o69_A 255 IYEWYKEFLGEY 266 (394)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhccc
Confidence 999999999887
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=220.39 Aligned_cols=280 Identities=13% Similarity=0.008 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC--CCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC--LIS 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~--~~~ 216 (476)
....++++++++ +|.+ ...++|+|+|+||..++.++.. |++.|++++++|.|+..++.+.|++++.++. +++
T Consensus 57 ~~~~~~~~~la~-~g~~---~~v~~~~G~t~a~~~~~~a~~~--~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY---DGYFLVNGTTSGILSVIQSFSQ--KKGDILMARNVHKSVLHALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp SHHHHHHHHHCS-CTTE---EEEEESSHHHHHHHHHHHTTTT--SSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTT
T ss_pred hHHHHHHHHHHh-cCCC---ceEEEeCCHHHHHHHHHHHhcC--CCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccc
Confidence 455678888999 9886 2478999999999999988765 8999999999999999999999999999988 654
Q ss_pred ----CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 ----GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 ----g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.+|+++| +.+++ .+|++++ +|++|.+.|+++|+++|++||+ |+|+|+||++ .+.+... .+
T Consensus 131 ~~~~~~~d~~~l---~~~~~---~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~-----~livDea~~~-~~~f~~~--~~ 195 (446)
T 2x3l_A 131 TNHYNKVNLSRL---NNDGH---KLVVLTY-PNYYGETFNVEEVIKSLHQLNI-----PVLIDEAHGA-HFGLQGF--PD 195 (446)
T ss_dssp TSSEEEEEC----------C---CEEEEES-SCTTSCCCCHHHHHHHHHHTTC-----CEEEECTTCT-TTTSTTS--CC
T ss_pred cCcCCCCCHHHH---cCCCc---eEEEEEC-CCCCeEecCHHHHHHHHHhcCC-----eEEEcchhhh-hhccCCC--CC
Confidence 67899888 33333 3777777 6669999999999999999999 9999999987 3322221 13
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhh--hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHIN--VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~--~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
+... .+|+++.|+||++++|.++|+++++++.++ .+.....+. ..++.+.....++.++++.+...+.++.
T Consensus 196 ~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~------~~~s~~~~~~aal~~a~~~l~~~g~~~~ 269 (446)
T 2x3l_A 196 STLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYF------QTSSPSYLIMASLESAAQFYKTYDSTLF 269 (446)
T ss_dssp CGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHH------SCSSCCHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ChHHcCCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHH------cCCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 3322 379999999999988899999999887543 211100111 1223332223344555555544455557
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeec-ccCCEEEEEEcCCCCHHHHHHHHH
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLA-CQGNIAHVVVMPNVTIDKLDDFLN 441 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~-~~~~~lRv~~~~~~T~edid~~~~ 441 (476)
.++..++++++++. ++..+.+.....+.+..++ ..++. +++.+. ...+.+|++++..+|++++ ++++
T Consensus 270 ~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~ 344 (446)
T 2x3l_A 270 FAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDS 344 (446)
T ss_dssp HHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHH
T ss_pred HHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHH
Confidence 78888888888776 6655443323345666542 22222 344444 4457899999999999999 9999
Q ss_pred HHHHHHHHH
Q 011842 442 ELIENRSTW 450 (476)
Q Consensus 442 ~l~~~~~~~ 450 (476)
+|+++.+.+
T Consensus 345 aL~~~~~~~ 353 (446)
T 2x3l_A 345 LLRKIEDMI 353 (446)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhh
Confidence 999987654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=205.22 Aligned_cols=285 Identities=14% Similarity=0.078 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
+..++++++.+++. +.++ ..+++|+|||+|+..++.++.. |++.|+++.++|.++...++..|++++.+|++.
T Consensus 64 g~~~l~~~la~~~~---~~~~--~~v~~~~g~~~a~~~~~~~l~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 136 (375)
T 3op7_A 64 GSPAFKKSVSQLYT---GVKP--EQILQTNGATGANLLVLYSLIE--PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEE 136 (375)
T ss_dssp CCHHHHHHHHTTSS---SCCG--GGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEG
T ss_pred ChHHHHHHHHHHhc---cCCh--hhEEEcCChHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHcCCEEEEEeccc
Confidence 34567766555431 3443 3599999999999999988865 899999999999999999999999999999873
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.+|+++|++++.++++ +|+++++.+++|.+.| +++|+++|++||+ ++++|++|+.+... ....
T Consensus 137 ~~~~~~d~~~l~~~l~~~~~---~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~-----~li~De~~~~~~~~--~~~~ 206 (375)
T 3op7_A 137 ENGWLPDLEKLRQLIRPTTK---MICINNANNPTGAVMDRTYLEELVEIASEVGA-----YILSDEVYRSFSEL--DVPS 206 (375)
T ss_dssp GGTTEECHHHHHHHCCTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-----EEEEECCSCCCSSS--CCCC
T ss_pred cCCCCCCHHHHHHhhccCCe---EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCC-----EEEEEccccccccc--CCCc
Confidence 456899999999976554 7788889999999999 9999999999999 99999999875442 1000
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGFQ 367 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~~ 367 (476)
..+. ...+.+..+++|+++ .++++|++++++++.+.+.....+. ..+.+ .+.++++...+. ...++
T Consensus 207 ~~~~-~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~-------~~~~~---~~~~~~~~~~l~~~~~~~~ 275 (375)
T 3op7_A 207 IIEV-YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT-------MICAG---VFDDLVAQLALAHYQEILE 275 (375)
T ss_dssp HHHH-CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT-------TSCCC---HHHHHHHHHHHHTHHHHHH
T ss_pred hhhh-cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh-------ccCCC---cHHHHHHHHHHhccHHHHH
Confidence 0111 124577888999997 6788999999887777664333221 11111 233333333321 23355
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecC--C-cHHHh------hceeec-c----cCCEEEEEEcCCCC
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERP--Q-DEEFV------RRWQLA-C----QGNIAHVVVMPNVT 432 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~--~-~~~~~------~~~~l~-~----~~~~lRv~~~~~~T 432 (476)
+..++..++++++.+.|++.+...+..+ ....+++..+ . ..++. ++..+. . ..+.+|+++. .+
T Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~--~~ 353 (375)
T 3op7_A 276 RNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFA--CE 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCC--SC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEec--CC
Confidence 6667778899999999998754444433 3333333332 2 22222 233332 1 1478898765 45
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011842 433 IDKLDDFLNELIENRSTW 450 (476)
Q Consensus 433 ~edid~~~~~l~~~~~~~ 450 (476)
.++|+.+++.|.++.+++
T Consensus 354 ~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 354 QETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999887654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=201.80 Aligned_cols=271 Identities=14% Similarity=0.132 Sum_probs=195.6
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
+++.+++++|.+++ .+++|+|+++++..++.+... || +.|+++.++|.++...++..|++++.+|.++++.+|++
T Consensus 63 lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~~~--~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 138 (356)
T 1fg7_A 63 VIENYAQYAGVKPE--QVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQ 138 (356)
T ss_dssp HHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCHH
T ss_pred HHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHHhC--CCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCCHH
Confidence 34445566687643 599999999999999888765 88 99999999999999999999999999999877789999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCCCC-cc-cc
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF-KK-PI 298 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~-~~-~~ 298 (476)
+|+++++ + +.+|++++++|+||.+.|.++|.++++. +|+ ++++|++|+.+. +.. +.... .. ..
T Consensus 139 ~l~~~i~-~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~-----~li~De~~~~~~-~~~---~~~~~~~~~~~ 205 (356)
T 1fg7_A 139 GISDKLD-G---VKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA-----IVVADEAYIEFC-PQA---SLAGWLAEYPH 205 (356)
T ss_dssp HHHTSCT-T---EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC-----EEEEECTTGGGS-GGG---CSGGGTTTCTT
T ss_pred HHHHHhc-C---CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCC-----EEEEEccchhhc-CCC---cHHHHHhhCCC
Confidence 9998885 3 3478888999999999876555544443 899 999999998654 111 11111 11 25
Q ss_pred cEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc---HHHHHHHHH
Q 011842 299 GSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG---FQKEVQKCL 374 (476)
Q Consensus 299 Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g---~~~~~~~~~ 374 (476)
+++..+++|+++ .++++|++++++++++.+...... + + ...+.++++...+...+ +++..++..
T Consensus 206 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~-------~--~---~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 273 (356)
T 1fg7_A 206 LAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAP-------Y--P---LSTPVADIAAQALSPQGIVAMRERVAQII 273 (356)
T ss_dssp EEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS-------S--C---SCHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred EEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCC-------C--C---CCHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 678889999986 678899999988876655321111 1 1 22456666666665544 677788888
Q ss_pred HHHHHHHHHHHhcCC-eEeecCCeeEEEEecCCcHHHhh-----ceeecc-c-----CCEEEEEEcCCCCHHHHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGI-SAMLNELSSTVVFERPQDEEFVR-----RWQLAC-Q-----GNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~-~~~~~~~~~iv~f~~~~~~~~~~-----~~~l~~-~-----~~~lRv~~~~~~T~edid~~~~~ 442 (476)
++++++.+.|++.|. ....++.++++.+..++..++.+ ++.+.. . .+.+|+++. +++|+++++++
T Consensus 274 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~ 350 (356)
T 1fg7_A 274 AEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDA 350 (356)
T ss_dssp HHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEECCCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHH
Confidence 999999999999873 23345556777777664333322 333322 2 258999885 68999999999
Q ss_pred HHHH
Q 011842 443 LIEN 446 (476)
Q Consensus 443 l~~~ 446 (476)
|+++
T Consensus 351 l~~~ 354 (356)
T 1fg7_A 351 LRAE 354 (356)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 8753
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=207.36 Aligned_cols=288 Identities=14% Similarity=0.101 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc-hhHHHHHHHHHHhh-CCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCG-TEGNLHGILVGREV-FPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg-t~An~~al~aa~~~-~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++.+++++++++++|.+ ++..+++|+|+ |+|+..++.+.... .++++|+++..+|+++. .++.+| +++.+|+
T Consensus 45 ~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~ 121 (360)
T 1w23_A 45 SYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHH-HHHHhC-CeEEeec
Confidence 45678889999999999996 23468999998 99999888776542 24678889888888754 457789 9999999
Q ss_pred CC-CCccCHHHHHH-HHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 214 LI-SGEIDCADFKA-KLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~~-~g~~D~~~Le~-~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++ +|.+|+++|++ ++.++ +.+|++++++|++|.+.| +| +++||+ ++++|++|+.+..+
T Consensus 122 ~~~~~~~d~~~l~~~~i~~~---~k~v~~~~~~nptG~~~~--~i---~~~~~~-----~li~D~a~~~~~~~------- 181 (360)
T 1w23_A 122 TKANSYQSIPDFSEFQLNEN---DAYLHITSNNTIYGTQYQ--NF---PEINHA-----PLIADMSSDILSRP------- 181 (360)
T ss_dssp CGGGTSCSCCCGGGCCCCTT---EEEEEEESEETTTTEECS--SC---CCCCSS-----CEEEECTTTTTSSC-------
T ss_pred ccccCcCCccchHhhccCCC---CCEEEEeCCCCCcceecc--cc---cccCCc-----eEEEechhhcCCCC-------
Confidence 75 67789999988 77443 458888899999999865 33 338999 99999999865443
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCC----CCcccCCCCChhHHHHHHHHHHhChh-c
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASR----DATIMGSRNGHAPIFLWYTLNRKGYK-G 365 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~----~~~~~~sr~~~~~l~~~~~l~~~g~~-g 365 (476)
++... .|+++.++||+++ |.|+|++++++++++.+.... .|+... .....++.+......+..+++.+... +
T Consensus 182 ~~~~~-~di~~~s~sK~~~-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 259 (360)
T 1w23_A 182 LKVNQ-FGMIYAGAQKNLG-PSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG 259 (360)
T ss_dssp CCGGG-CSEEEEETTTTTS-CTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH
T ss_pred cCccc-CCEEEEEcccccC-CCCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 22222 3899999999997 678999999988765553221 121100 00112333323334455566655444 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CeEee--cC-Cee-EEEEecCCc---HHHhh-----ceeecc---cCCEEEEEEcC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAG-ISAML--NE-LSS-TVVFERPQD---EEFVR-----RWQLAC---QGNIAHVVVMP 429 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g-~~~~~--~~-~~~-iv~f~~~~~---~~~~~-----~~~l~~---~~~~lRv~~~~ 429 (476)
++++.++..++++++.+.|++.+ +.... ++ .++ ++.|..++. .++.+ ++.+.. ..+.+|++++.
T Consensus 260 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~ 339 (360)
T 1w23_A 260 AEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYN 339 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecC
Confidence 78899999999999999999887 42322 22 234 777777642 22322 222221 13689999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~ 448 (476)
.+|++++++++++|+++.+
T Consensus 340 ~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 340 AVPIDACIALRELMIQFKE 358 (360)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=209.91 Aligned_cols=299 Identities=10% Similarity=-0.003 Sum_probs=209.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCccc---EEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH-cCCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYW---GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM-YRMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~---g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~-~G~~v~~v 211 (476)
+..++++++.+++.+.. ...+... +++|+|+++|+..++.++.+ |++.|+++.++|.++...++. .|++++.+
T Consensus 89 g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~ 165 (430)
T 2x5f_A 89 GIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTY 165 (430)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHTTTTCCEEEEE
T ss_pred CCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHhC--CCCEEEEcCCcCccHHHHHHHhcCCeEEEE
Confidence 35688889888887763 4333346 89999999999999988765 899999999999999999999 99999999
Q ss_pred eCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHH-----hCCCCCceEEEEecCccccc
Q 011842 212 DCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEE-----SGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 212 ~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~-----~g~~~~~~~lhvD~a~~g~~ 282 (476)
|+++ ++.+|+++|++++.+...++.++++++++|+||.+.| +++|+++|++ ||+ ++++|++|+.+.
T Consensus 166 ~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~-----~li~De~~~~~~ 240 (430)
T 2x5f_A 166 PIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKV-----IAVVDDAYYGLF 240 (430)
T ss_dssp CCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEE-----EEEEECTTTTCB
T ss_pred eccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCE-----EEEEehhccccc
Confidence 9875 4689999999999874334457888899999999988 8999999999 999 999999998765
Q ss_pred ccccccCCCC-CCc--ccc---cEEEEcCCCCCC-CCCCceeEEe---ehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 283 MPFVKKAPKV-SFK--KPI---GSVSVSGHKFVG-CPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 283 ~~~~~~~~~~-~~~--~~~---Dsi~~s~hK~l~-~p~~~G~l~~---~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+......+.. .+. ... +++..++||+++ .++++|++++ ++++++.+......... ....+. ..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~---~~~ 314 (430)
T 2x5f_A 241 YEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIR---SNISSG---PLP 314 (430)
T ss_dssp CSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHH---TTTSSC---CHH
T ss_pred CCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhh---cccCCC---ChH
Confidence 4321111111 111 123 567889999996 6678999999 77766555321111000 001111 234
Q ss_pred HHHHHHHHhC-h----hcHHHHHHHHHHHHHHHHHHHH----hcCCeEeecCCe-eEEEEecC--CcHHH----h--hce
Q 011842 353 FLWYTLNRKG-Y----KGFQKEVQKCLRNAHYLKDRLL----DAGISAMLNELS-STVVFERP--QDEEF----V--RRW 414 (476)
Q Consensus 353 ~~~~~l~~~g-~----~g~~~~~~~~~~~a~~l~~~L~----~~g~~~~~~~~~-~iv~f~~~--~~~~~----~--~~~ 414 (476)
.++++...+. . +.+++..++..++++++.+.|+ +.|+. +.++.. ..+.+..+ +..++ . +++
T Consensus 315 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi 393 (430)
T 2x5f_A 315 TQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQ-AYDFNSGYFMAIKVHDVDPEALRKHLIDKYSI 393 (430)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEE-ECCCCBSSEEEEEESSSCHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce-eeCCCceEEEEeCCCCCCHHHHHHHHHHhCCE
Confidence 4444444442 1 2234477778889999999998 55543 334444 34555554 22222 2 344
Q ss_pred eecc-cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 415 QLAC-QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 415 ~l~~-~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+.. ..+.+|++++. +++++|+++++.|+++.+++
T Consensus 394 ~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 394 GVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp ECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred EEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 4433 35789999885 59999999999999987654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=223.16 Aligned_cols=298 Identities=14% Similarity=0.122 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH-HHHcCCeEEEEeCCCC--
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA-ARMYRMECVKVDCLIS-- 216 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~-~~~~G~~v~~v~~~~~-- 216 (476)
...++.+.+++++|.+. ..++++|+|+||..++.+... ||+.|+++++.|.|+..+ +++.|++++.++.+.+
T Consensus 174 ~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al~~--pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~ 248 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPY 248 (730)
T ss_dssp HHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTT
T ss_pred HHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhcC--CCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 45577788999999874 267777888999999988766 999999999999999998 8889999998876432
Q ss_pred ---CccCHHHH-----HHHHHcC------CCCc-EEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 217 ---GEIDCADF-----KAKLLQN------KDKP-AIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 217 ---g~~D~~~L-----e~~l~~~------~~~p-~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
|.+|+++| +++|.++ +.+| .+|+++++ |++|.+.|+++|+++|++||+ ++|+|+||+++
T Consensus 249 ~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~-----~livDeAh~~~ 322 (730)
T 1c4k_A 249 GFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCD-----YIEFDSAWVGY 322 (730)
T ss_dssp CCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBS-----EEEEECTTCCG
T ss_pred CccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCC-----eEEEEcccccc
Confidence 45788888 8888765 4233 47778877 589999999999999999999 99999999754
Q ss_pred cc--cccccCCCCCCcc-ccc----EEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC----CC-Ccc-cCCCCC
Q 011842 282 MM--PFVKKAPKVSFKK-PIG----SVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS----RD-ATI-MGSRNG 348 (476)
Q Consensus 282 ~~--~~~~~~~~~~~~~-~~D----si~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~----~~-~~~-~~sr~~ 348 (476)
.. +...+...++... ++| +++.|+||++++|.++|+++++++.+.. ...++.. .. ..+ .++.+.
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g---~~~~i~~~~~~~~~~~~~stsp~~ 399 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKG---QLRYCDHKHFNNSFNLFMSTSPFY 399 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTT---STTCCCHHHHHHHHHHHSCSSCCH
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcC---cccccCHHHHHHHHHHhCCCCCcH
Confidence 32 2111111232211 366 9999999999988888999888875411 0011100 00 001 223332
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh--cCCeEeecCC------------------------------
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD--AGISAMLNEL------------------------------ 396 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~--~g~~~~~~~~------------------------------ 396 (476)
....++.++++.+..++.++.+++..++++++++.|++ .|+..+.++.
T Consensus 400 ~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (730)
T 1c4k_A 400 PMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWH 479 (730)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhc
Confidence 22233445555554434477789999999999999998 4554432210
Q ss_pred ------e---eE----EEEecCC--------------cHHHh-----hceeec-ccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 397 ------S---ST----VVFERPQ--------------DEEFV-----RRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 397 ------~---~i----v~f~~~~--------------~~~~~-----~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
. .+ +.|..|+ ..++. +++.+. .....+|+++++.+|++++++|+++|
T Consensus 480 g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL 559 (730)
T 1c4k_A 480 AYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQL 559 (730)
T ss_dssp CCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHH
T ss_pred cccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0 11 4565531 11111 123232 34578999999999999999999999
Q ss_pred HHHHHHHH
Q 011842 444 IENRSTWY 451 (476)
Q Consensus 444 ~~~~~~~~ 451 (476)
+++.+.+.
T Consensus 560 ~~i~~~~~ 567 (730)
T 1c4k_A 560 LQLQRLIE 567 (730)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99987664
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=223.33 Aligned_cols=295 Identities=13% Similarity=0.028 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC--
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-- 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-- 216 (476)
....+..+.+++++|.+. ..++++|+|+||..++.+... ||+.|+++++.|.|+..+++..|++++.++.+.+
T Consensus 205 g~v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al~~--~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQACMT--DNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTT
T ss_pred cHHHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHhcC--CCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcc
Confidence 344567788999999863 367788888999999988876 9999999999999999999999999999987643
Q ss_pred ---Ccc-----CHHHHHHHHHcC--C-----CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 217 ---GEI-----DCADFKAKLLQN--K-----DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 217 ---g~~-----D~~~Le~~l~~~--~-----~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
|.+ |+++|+++|.++ + .+|.+++++++ |++|.+.|+++|+++|++||+ ++|+|+||+++
T Consensus 280 g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~-----~livDeA~~~~ 353 (755)
T 2vyc_A 280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSD-----RLHFDEAWYGY 353 (755)
T ss_dssp SCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCS-----EEEEECTTCTT
T ss_pred ccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCC-----EEEEECcCchh
Confidence 346 999999999763 2 23457777776 689999999999999999999 99999999864
Q ss_pred cccccc--cCCCCCCcccccE------EEEcCCCCCCCCCCceeEEeehh--hh--hhhcCCccccCCCCCcccCCCCCh
Q 011842 282 MMPFVK--KAPKVSFKKPIGS------VSVSGHKFVGCPMPCGVQITRME--HI--NVLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 282 ~~~~~~--~~~~~~~~~~~Ds------i~~s~hK~l~~p~~~G~l~~~~~--~~--~~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
...... ....+.+ +.+|+ ++.|+||++++|.++|+++++++ .+ ..+......+ ..+|.+..
T Consensus 354 ~~~~~~~~~~~~~~g-~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~------~s~sp~~~ 426 (755)
T 2vyc_A 354 ARFNPIYADHYAMRG-EPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMH------ATTSPLYA 426 (755)
T ss_dssp GGGCGGGTTSSSSCS-CCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHT------SCSSCCHH
T ss_pred cccCcccCCcchhcC-CcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHh------CCCCHHHH
Confidence 322111 1111111 11454 99999999998888999998875 22 1111100111 02233323
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC---------eEeecCC------------------------
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI---------SAMLNEL------------------------ 396 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~---------~~~~~~~------------------------ 396 (476)
...++.++++.+...|.++++++..+++++++++|++.+. ..+..+.
T Consensus 427 ~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (755)
T 2vyc_A 427 ICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTV 506 (755)
T ss_dssp HHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccch
Confidence 3344556667666565678999999999999999988532 2211110
Q ss_pred --------------------------eeEEEEecCC------------c-HH---Hhhceeec---ccCCEEEEEEcCCC
Q 011842 397 --------------------------SSTVVFERPQ------------D-EE---FVRRWQLA---CQGNIAHVVVMPNV 431 (476)
Q Consensus 397 --------------------------~~iv~f~~~~------------~-~~---~~~~~~l~---~~~~~lRv~~~~~~ 431 (476)
...+.|..++ + .+ +++...+. ...+.+|+++++.+
T Consensus 507 ~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~~~g~ 586 (755)
T 2vyc_A 507 QDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGV 586 (755)
T ss_dssp GGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEECCTTC
T ss_pred hhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEECCCC
Confidence 1245565542 0 11 22223332 24578999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 432 T~edid~~~~~l~~~~~~~~ 451 (476)
|++++++++++|.++.+.+-
T Consensus 587 t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 587 TRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp CTTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999977653
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-22 Score=196.51 Aligned_cols=268 Identities=12% Similarity=0.010 Sum_probs=196.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++.+++++|.+++ .+++|+|+++++..++.+. +++.|+++.++|.++...++..|++++.+|.++++.+|++
T Consensus 55 ~lr~~la~~~~~~~~--~i~~t~G~~~~l~~~~~~~----~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~ 128 (337)
T 3p1t_A 55 RVMRKLAEHFSCPED--NLMLVRGIDECFDRISAEF----SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPN 128 (337)
T ss_dssp HHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHS----TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHH
T ss_pred HHHHHHHHHhCcCHH--HEEEeCCHHHHHHHHHHhc----CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHH
Confidence 344556667788643 5999999999998887764 8899999999999999999999999999999888899999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~ 302 (476)
+|+++ .+ +.++++++++|++|.+.|+++|.++|++++. +++|++|+.+.... .. .... ...+++.
T Consensus 129 ~l~~~--~~---~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~------~ivDea~~~~~~~~-~~--~~~~-~~~~i~~ 193 (337)
T 3p1t_A 129 DLAQV--SR---DDCVVLANPSNPTGQALSAGELDQLRQRAGK------LLIDETYVDYSSFR-AR--GLAY-GENELVF 193 (337)
T ss_dssp HHTTC--CT---TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE------EEEECTTGGGSSCS-SS--CCCC-BTTEEEE
T ss_pred HHHhh--cC---CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc------EEEECCChhhcccc-cc--cccc-CCCEEEE
Confidence 99875 22 3488889999999999999999999999986 45599998543211 11 1111 2257888
Q ss_pred EcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHHHHHHHHHHHH
Q 011842 303 VSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEVQKCLRNAHYL 380 (476)
Q Consensus 303 ~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~~~~~~~a~~l 380 (476)
.|++|+++ .++++|+++.++++++.+.....+ ++. ..+.+.++...+.. +.+.+.+++..++++++
T Consensus 194 ~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 261 (337)
T 3p1t_A 194 RSFSKSYGLAGLRLGALFGPSELIAAMKRKQWF---------CNV---GTLDLHALEAALDNDRAREAHIAKTLAQRRRV 261 (337)
T ss_dssp EESSSTTCCTTTCCEEEECCHHHHHHHHTTSCT---------TCS---CHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred eeCchhccCcchheEEEEeCHHHHHHHHhhcCC---------CCC---CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999996 789999999998877666432111 111 12344444444432 34677788888899999
Q ss_pred HHHHHhcCCeEeecCCeeEEEEecCCcHHHh-----hceeecc-----cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 381 KDRLLDAGISAMLNELSSTVVFERPQDEEFV-----RRWQLAC-----QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 381 ~~~L~~~g~~~~~~~~~~iv~f~~~~~~~~~-----~~~~l~~-----~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
.+.|++.|+.. .++..+++.|..++...+. +++.+.. ..+.+|++++ |++++++++++|+++.
T Consensus 262 ~~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 262 ADALRGLGYRV-ASSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HHHHHHTTCCB-CCCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCEE-CCCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 99999987643 4555667777766543332 2333321 1478999976 7999999999998764
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=200.40 Aligned_cols=270 Identities=11% Similarity=0.036 Sum_probs=192.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++++++++|.+++ .+++|+|||+|+..++.+... ||+.|+++.++|.++...++..|++++.+|.++++.+ +
T Consensus 69 ~lr~~la~~~g~~~~--~i~~t~g~~~al~~~~~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~ 142 (360)
T 3hdo_A 69 KLREVAGELYGFDPS--WIIMANGSDEVLNNLIRAFAA--EGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--A 142 (360)
T ss_dssp HHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--T
T ss_pred HHHHHHHHHhCcCcc--eEEEcCCHHHHHHHHHHHHhC--CCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--H
Confidence 344456666776543 599999999999999988765 8999999999999999999999999999999876665 4
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc--ccccE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK--KPIGS 300 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~--~~~Ds 300 (476)
++++.+ ++ .+++++++.|++|.+.|+++|.++|+++|+ ++++|++|+.+... ...... ...++
T Consensus 143 ~l~~~~--~~---~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-----~li~De~~~~~~~~-----~~~~~~~~~~~~i 207 (360)
T 3hdo_A 143 GFPERY--EG---KVFFLTTPNAPLGPSFPLEYIDELARRCAG-----MLVLDETYAEFAES-----NALELVRRHENVV 207 (360)
T ss_dssp TCCSSB--CS---SEEEEESSCTTTCCCCCHHHHHHHHHHBSS-----EEEEECTTGGGSSC-----CCTHHHHHCSSEE
T ss_pred HHHhhc--CC---CEEEEeCCCCCCCCCcCHHHHHHHHHHCCC-----EEEEECChHhhCCc-----chhHHhccCCCEE
Confidence 433221 12 377788899999999999999999999999 99999999864211 111111 12457
Q ss_pred EEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHHHHH
Q 011842 301 VSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLRNAH 378 (476)
Q Consensus 301 i~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~a~ 378 (476)
+..+++|+++ .++++|++++++++.+.+...... .+. ..+.++++...+. .+.+++..++..++++
T Consensus 208 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 275 (360)
T 3hdo_A 208 VTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDH---------YNL---DRLAQAACVAALRDQAYLSECCRRIRETRE 275 (360)
T ss_dssp EEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSCS---------CCS---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEecchHhhcCCccceeeEeeCHHHHHHHHHhCCC---------CCC---CHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 7789999985 678999999988776655321111 111 2344444443332 3346788888999999
Q ss_pred HHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeecc-----cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 379 YLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLAC-----QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 379 ~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~-----~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
++.+.|++.++. +.++..+++.+..+. ..++. +++.+.. ..+.+|++++ |++|+|+|+++|+++
T Consensus 276 ~l~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 276 WFTTELRSIGYD-VIPSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEI 351 (360)
T ss_dssp HHHHHHHHTTCE-ECCCSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCE-EcCCCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 999999998764 345566667676653 23332 2333322 2378999976 999999999999987
Q ss_pred HHH
Q 011842 447 RST 449 (476)
Q Consensus 447 ~~~ 449 (476)
.+.
T Consensus 352 ~~~ 354 (360)
T 3hdo_A 352 GEG 354 (360)
T ss_dssp HC-
T ss_pred hcc
Confidence 643
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=209.57 Aligned_cols=290 Identities=13% Similarity=0.075 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcc-cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--------HHHHHcCCeE
Q 011842 138 RQFEVGVLDWFARLWELENNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--------KAARMYRMEC 208 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~-~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--------~~~~~~G~~v 208 (476)
.++|+.+++++++++|.+.++. ..+++++||+||+.++.+... |||.|+++++.|.+.. ..+.+.|..+
T Consensus 99 ~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~ 176 (490)
T 2a7v_A 99 DEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF 176 (490)
T ss_dssp THHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC--SCEECCC---------------------------
T ss_pred HHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC--CCCEecccCccccccccchhhhcchhHHHcCCeE
Confidence 4889899999999999986432 235566999999999998866 9999999998885432 1334556544
Q ss_pred --EEEeCC-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 209 --VKVDCL-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 209 --~~v~~~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
+.++++ +++.+|+++|++++.+ +++ +|+++.+ ..|...|+++|.++|++||+ ++|+|+||+.+...
T Consensus 177 ~~~~~~vd~~~~~iD~d~le~~l~~~~~k---lIi~~~s--~~~~~~dl~~i~~ia~~~g~-----~livD~Ah~~glv~ 246 (490)
T 2a7v_A 177 ESMPYKLNPKTGLIDYNQLALTARLFRPR---LIIAGTS--AYARLIDYARMREVCDEVKA-----HLLADMAHISGLVA 246 (490)
T ss_dssp ----CCBCTTTCSBCHHHHHHHHHHHCCS---EEEECCS--SCCSCCCHHHHHHHHHHTTC-----EEEEECGGGHHHHH
T ss_pred EEEecccccccCCcCHHHHHHHHhhcCCc---EEEEcCC--CCCCcccHHHHHHHHHHcCC-----EEEEcccccccccc
Confidence 444555 4689999999999975 343 6665433 34567899999999999999 99999998744332
Q ss_pred ccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhh---------------hhhcCCccccCCCCCcccCCCCCh
Q 011842 285 FVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI---------------NVLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 285 ~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~---------------~~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
.......+ ..+|++++++||++++|. .|+++++++.. +.+. ..++ ....++....
T Consensus 247 ~g~~~~~~---~~aDiv~~S~hK~l~Gp~-GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~---~g~qggp~~~ 316 (490)
T 2a7v_A 247 AKVIPSPF---KHADIVTTTTHKTLRGAR-SGLIFYRKGVKAVDPKTGREIPYTFEDRIN---FAVF---PSLQGGPHNH 316 (490)
T ss_dssp TTSSCCGG---GTCSEEEEESSGGGCSCS-CEEEEEECSEEEEETTTEEEEECCCHHHHH---HHHT---TTTCCSCCHH
T ss_pred CCcCCCCC---CCCCEEEECCcccCcccc-chheeeccchhcccccccchhhHHHHHHHH---HHhc---ccCCCCchHH
Confidence 21111112 248999999999998665 59999887521 1111 0111 1123333322
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC----cHHH---hh--ceeec--
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ----DEEF---VR--RWQLA-- 417 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~----~~~~---~~--~~~l~-- 417 (476)
...++.++++......++++.++.++++++|.+.|++.|+.++.+ ..++++.+.... ..++ ++ ++.+.
T Consensus 317 ~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~ 396 (490)
T 2a7v_A 317 AIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKN 396 (490)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecC
Confidence 233344455544344668889999999999999999998866543 335677666432 1222 11 22221
Q ss_pred --------ccCCEEEEEE----cCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 --------CQGNIAHVVV----MPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 --------~~~~~lRv~~----~~~~T~edid~~~~~l~~~~~~ 449 (476)
.....+|+.+ +...+++|++++++.|.++.+.
T Consensus 397 ~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 397 TCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 1236799954 5678999999999999888754
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=196.81 Aligned_cols=272 Identities=13% Similarity=0.005 Sum_probs=198.1
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCA 222 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~ 222 (476)
++++++++++|.+++ .+++|+|||+|+..++.++ +.|+++.++|.++...++..|++++.+|.++++.+|++
T Consensus 65 ~l~~~la~~~~~~~~--~i~~~~g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 136 (361)
T 3ftb_A 65 RLNKSIENYLKLKDI--GIVLGNGASEIIELSISLF------EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYE 136 (361)
T ss_dssp HHHHHHHHHHTCCSC--EEEEESSHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHH
T ss_pred HHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHH
Confidence 344556666787653 4999999999999887765 68999999999999999999999999999988889999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC--ccc
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF--KKP 297 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~--~~~ 297 (476)
+|++++.+ ++ +|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+... ........ ...
T Consensus 137 ~l~~~l~~-~~---~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~--~~~~~~~~~~~~~ 205 (361)
T 3ftb_A 137 DIISKIDD-VD---SVIIGNPNNPNGGLINKEKFIHVLKLAEEKKK-----TIIIDEAFIEFTGD--PSSSFVGEIKNYS 205 (361)
T ss_dssp HHHHHTTT-CS---EEEEETTBTTTTBCCCHHHHHHHHHHHHHHTC-----EEEEECSSGGGTCC--TTSSSGGGTTTCS
T ss_pred HHHHhccC-CC---EEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCC-----EEEEECcchhhcCC--cccchhHhcccCC
Confidence 99999976 54 7888899999999965 6778888889999 99999999876553 11111111 112
Q ss_pred ccEEEEcCCCCCC-CCCCceeEE-eehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHH
Q 011842 298 IGSVSVSGHKFVG-CPMPCGVQI-TRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCL 374 (476)
Q Consensus 298 ~Dsi~~s~hK~l~-~p~~~G~l~-~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~ 374 (476)
.+++..+++|+++ .+.++|+++ .++++.+.+.....+ .+ ...+.++++...+. .+.+++..++..
T Consensus 206 ~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ 273 (361)
T 3ftb_A 206 CLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP---------WN---INCFAEMAAINCLKDTNYIEESLLWIK 273 (361)
T ss_dssp SEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT---------TC---SCHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC---------CC---CCHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3466789999987 678899998 666666655332211 11 12355555555543 345678888889
Q ss_pred HHHHHHHHHHHhcCCeE-eecCCeeEEEEecCC--cHHHh-----hceeecc-------cCCEEEEEEcCCCCHHHHHHH
Q 011842 375 RNAHYLKDRLLDAGISA-MLNELSSTVVFERPQ--DEEFV-----RRWQLAC-------QGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 375 ~~a~~l~~~L~~~g~~~-~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~-------~~~~lRv~~~~~~T~edid~~ 439 (476)
++++++.+.|++.+... +.++..+++.+..+. ..++. +++.+.. ..+.+|++++ +.++++++
T Consensus 274 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l 350 (361)
T 3ftb_A 274 KERKRFIEELNKIGFIKRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKF 350 (361)
T ss_dssp HHHHHHHHHHHHSSSEEEEECCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCceecCCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHH
Confidence 99999999999985544 556666677777653 23332 2333321 2478999875 89999999
Q ss_pred HHHHHHHHH
Q 011842 440 LNELIENRS 448 (476)
Q Consensus 440 ~~~l~~~~~ 448 (476)
+++|+++.+
T Consensus 351 ~~~l~~~~~ 359 (361)
T 3ftb_A 351 LRALKGVEN 359 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988764
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=204.11 Aligned_cols=272 Identities=13% Similarity=0.116 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
...+++++.+++++|.+ ..++++||++|+..++.+... ||+.|+++.+.|.++.. .++..|++++.+|.+
T Consensus 62 ~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 135 (404)
T 1e5e_A 62 PTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTILK--AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 135 (404)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 34445666677788875 278888999999998887755 89999999999999887 788899999999986
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-hCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~-~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
|+++|++++.+++ .+|++++++|++|.+.|+++|+++|++ ||+ ++++|++|+.+.+.. . +.
T Consensus 136 -----d~~~l~~~i~~~t---~~v~l~~p~NptG~v~~l~~i~~la~~~~~~-----~li~De~~~~~~~~~--~---~~ 197 (404)
T 1e5e_A 136 -----IPGEVKKHMKPNT---KIVYFETPANPTLKIIDMERVCKDAHSQEGV-----LVIADNTFCSPMITN--P---VD 197 (404)
T ss_dssp -----STTHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHTSTTC-----EEEEECTTTCTTTCC--G---GG
T ss_pred -----CHHHHHHhcCCCC---cEEEEECCCCCCCcccCHHHHHHHHHhhcCC-----EEEEECCCchhhhCC--c---cc
Confidence 8889999987554 488889999999999999999999999 999 999999998765421 0 11
Q ss_pred CcccccEEEEcCCCCCCCC-CC-ceeEEeehhhhh-hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCP-MP-CGVQITRMEHIN-VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p-~~-~G~l~~~~~~~~-~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
..+|+++.|+||+++.| ++ +|+++++++.++ .+.....+.. ++. ...+.+|+++..+ +.+..++
T Consensus 198 --~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~-------g~~--~~~~~~~~~~~~l--~~~~~~~ 264 (404)
T 1e5e_A 198 --FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT-------GSV--ISPHDAWLITRGL--STLNIRM 264 (404)
T ss_dssp --GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC-------CCC--CCHHHHHHHHHHH--TTHHHHH
T ss_pred --cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCC-------CCC--CCHHHHHHHHHhH--hHHHHHH
Confidence 24899999999988865 44 499999988766 5543222210 111 2246677766665 3456677
Q ss_pred HHHHHHHHHHHHHHHhcCCeE-e-ec------------C----CeeEEEEecCCc-H---HHhhceee--c---------
Q 011842 371 QKCLRNAHYLKDRLLDAGISA-M-LN------------E----LSSTVVFERPQD-E---EFVRRWQL--A--------- 417 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~-~-~~------------~----~~~iv~f~~~~~-~---~~~~~~~l--~--------- 417 (476)
++..++++.+.+.|++.+... + .+ + ..+++.|..++. + .+.++..+ .
T Consensus 265 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~~~s 344 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCES 344 (404)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSC
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCCcce
Confidence 777888888888888775211 1 11 1 167788876643 1 22322221 0
Q ss_pred ----c---------------c---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 418 ----C---------------Q---GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 418 ----~---------------~---~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
| . .+.+|+++.. |++++++++|+++.+...
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 345 LIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp EEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred eeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 0 1 3689998875 899999999999887654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=199.42 Aligned_cols=284 Identities=13% Similarity=0.037 Sum_probs=191.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-CccC
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-GEID 220 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g~~D 220 (476)
++++.+++++|.+. .+++++||+|+..++.++ .. |++.|+++.++|.++..+++..|++++.++++++ +.+|
T Consensus 42 ~l~~~la~~~~~~~----~i~~~sGt~al~~~l~~l~~~--~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d 115 (388)
T 1b9h_A 42 SFEREFAAHHGAAH----ALAVTNGTHALELALQVMGVG--PGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLD 115 (388)
T ss_dssp HHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred HHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCC
Confidence 44555777788752 445555699999998887 33 8899999999999999999999999999999864 8899
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
+++|+++|.+++ .+|+ +++++|.+.|+++|.++|++||+ ++|+|++|+.+..+.......+ ..+++
T Consensus 116 ~~~l~~~i~~~~---~~v~---~~n~tG~~~~l~~i~~la~~~~~-----~li~D~a~~~g~~~~~~~~~~~---~~i~~ 181 (388)
T 1b9h_A 116 PEAVAAAVTPRT---KVIM---PVHMAGLMADMDALAKISADTGV-----PLLQDAAHAHGARWQGKRVGEL---DSIAT 181 (388)
T ss_dssp HHHHHHHCCTTE---EEEC---CBCGGGCCCCHHHHHHHHHHHTC-----CBCEECTTCTTCEETTEEGGGS---SSCEE
T ss_pred HHHHHHhcCcCc---eEEE---EeCCccCcCCHHHHHHHHHHcCC-----EEEEecchhcCCccCCeecccc---cceEE
Confidence 999999996543 2444 67788999999999999999999 9999999985443211111111 12678
Q ss_pred EEEcCCCCCCCCCCceeEEeehh-h--hhhhcCCccccCCC-CCcc----cCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 301 VSVSGHKFVGCPMPCGVQITRME-H--INVLSSNVEYLASR-DATI----MGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 301 i~~s~hK~l~~p~~~G~l~~~~~-~--~~~l~~~~~yl~~~-~~~~----~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
++++.||++++ .++|+++++++ + .+.+.....+-... ...+ .++......+..++.+.. .+.+++.+++
T Consensus 182 ~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--~~~l~~~~~~ 258 (388)
T 1b9h_A 182 FSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ--LARLDEQIAV 258 (388)
T ss_dssp EECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH--HTTHHHHHHH
T ss_pred EEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHH--HHHHHHHHHH
Confidence 88889999975 46899998876 4 44432111110000 0001 112111223333333332 3457778888
Q ss_pred HHHHHHHHHHHHHhc-CCeEeec------CCeeEEEEecCC----c-HHHhh-----ceeec-----c------------
Q 011842 373 CLRNAHYLKDRLLDA-GISAMLN------ELSSTVVFERPQ----D-EEFVR-----RWQLA-----C------------ 418 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~-g~~~~~~------~~~~iv~f~~~~----~-~~~~~-----~~~l~-----~------------ 418 (476)
..++++++.+.|++. ++....+ ...+++.|..+. + .++.+ ++.+. .
T Consensus 259 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~ 338 (388)
T 1b9h_A 259 RDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAP 338 (388)
T ss_dssp HHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCC
T ss_pred HHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCC
Confidence 889999999999987 5543321 224677777763 1 22221 22221 0
Q ss_pred -----------------cCCEEEEEEcCCC-CHHHHHHHHHHHHHHHHH
Q 011842 419 -----------------QGNIAHVVVMPNV-TIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 -----------------~~~~lRv~~~~~~-T~edid~~~~~l~~~~~~ 449 (476)
....+|+++++.+ |++|||+++++|+++.++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 339 DESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp SSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0136899999999 999999999999987653
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-22 Score=201.40 Aligned_cols=288 Identities=12% Similarity=0.075 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH-H--HHHcC--CeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK-A--ARMYR--MECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~-~--~~~~G--~~v~~ 210 (476)
...++++++++++++++|.++. .+++++||+|+..++.++.. +++.|+++.++|.++.. . +...| ++++.
T Consensus 66 ~~~~l~~~~r~~la~~~g~~~~---~i~~~sGt~a~~~a~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 140 (405)
T 2vi8_A 66 YVDIVEELARERAKQLFGAEHA---NVQPHSGAQANMAVYFTVLE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVA 140 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHCC--TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCce---EEEecCcHHHHHHHHHHhcC--CCCEEEEecccccchhcccchhhhccceeEEEe
Confidence 3567888889999999998731 34455669999999988854 89999999999987643 1 12334 37777
Q ss_pred EeCC-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 211 VDCL-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 211 v~~~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
++++ .++.+|+++|++++++ +++ +|+++ + +..|...++++|.++|++||+ ++|+|++|+.+..+....
T Consensus 141 ~~~~~~~~~~d~~~l~~~i~~~~~~---~v~~~-~-~~~~~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~~~ 210 (405)
T 2vi8_A 141 YGVDPETHVIDYDDVREKARLHRPK---LIVAA-A-AAYPRIIDFAKFREIADEVGA-----YLMVDMAHIAGLVAAGLH 210 (405)
T ss_dssp ECBCTTTCSBCHHHHHHHHHHHCCS---EEEEC-C-SSCCSCCCHHHHHHHHHHHTC-----EEEEECTTTHHHHHTTSS
T ss_pred cccccccCCcCHHHHHHHHHhcCCe---EEEEe-C-CCCCccCCHHHHHHHHHHcCC-----EEEEEccccccccccCcC
Confidence 8775 5688999999999986 554 55553 3 334677789999999999999 999999998543322111
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
. ... ..+|+++.++||++++|.+ |++++++++.+.+.... .+. .++.+......+.++++.....+++
T Consensus 211 ~--~~~-~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~aa~~~al~~~~~~~~~ 279 (405)
T 2vi8_A 211 P--NPV-PYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPGI-------QGGPLMHVIAAKAVAFGEALQDDFK 279 (405)
T ss_dssp C--CST-TTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTTT-------CSSCCHHHHHHHHHHHHHHHSHHHH
T ss_pred C--Ccc-ccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcccc-------cCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 1 111 2478999999999987777 99999877665543211 111 1222212223334455554445778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC----cHHHh-----hceeecc-----------cCCEEEEE
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ----DEEFV-----RRWQLAC-----------QGNIAHVV 426 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~----~~~~~-----~~~~l~~-----------~~~~lRv~ 426 (476)
+..++..++++++.+.|++.|+....++ ..+++.+..+. ...+. +++.+.. ..+.+|++
T Consensus 280 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis 359 (405)
T 2vi8_A 280 AYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEe
Confidence 8999999999999999999876544432 45666666542 22222 2333321 23579999
Q ss_pred EcC----CCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMP----NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~----~~T~edid~~~~~l~~~~~~ 449 (476)
+.. .+|++|+++++++|+++.++
T Consensus 360 ~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 360 TAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred eeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 875 67899999999999987643
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=208.10 Aligned_cols=282 Identities=10% Similarity=0.013 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CCCc
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-ISGE 218 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~g~ 218 (476)
..++++.+++++|.+ .+++|+|||+|+..++.++ .. +++.|+++.++|.++..+++..|++++.++++ +++.
T Consensus 38 ~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~--~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (373)
T 3frk_A 38 DKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIG--FGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYN 111 (373)
T ss_dssp HHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCC--TTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTE
T ss_pred HHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccC
Confidence 344555577777875 3899999999999998877 43 89999999999999999999999999999998 5689
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
+|+++|++++.+++ .+|++ ++++|.+.|+++|.++|++||+ ++|+|++|+.+........ . ...
T Consensus 112 ~d~~~l~~~l~~~~---~~v~~---~n~~G~~~~l~~i~~l~~~~~~-----~li~D~a~~~g~~~~~~~~---~--~~~ 175 (373)
T 3frk_A 112 IDPSLIESAITEKT---KAIIA---VHLYGQPADMDEIKRIAKKYNL-----KLIEDAAQAHGSLYKGMKV---G--SLG 175 (373)
T ss_dssp ECGGGTGGGCCTTE---EEEEE---ECCTTCCCCHHHHHHHHHHHTC-----EEEEECTTCTTCEETTEET---T--SSS
T ss_pred cCHHHHHHhcCCCC---eEEEE---ECCCcCcccHHHHHHHHHHcCC-----EEEEECCcccCCEECCEec---c--ccc
Confidence 99999999886643 35554 4578999999999999999999 9999999985443221211 1 115
Q ss_pred cEEEEc--CCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCC--CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 299 GSVSVS--GHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRD--ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 299 Dsi~~s--~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~--~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
|++++| .||+++++...|+++.+++ +.+.+.....+-.... ....+.......+. +++.....+++++..++.
T Consensus 176 d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~--aa~~~~~~~~~~~~~~~~ 253 (373)
T 3frk_A 176 DAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQ--AGFLRVKLKYLDKWNEER 253 (373)
T ss_dssp SEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHH--HHHHHHHHHTHHHHHHHH
T ss_pred cEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHH--HHHHHHHHHHHHHHHHHH
Confidence 777777 6699986355778887754 4333211000000000 00111111112232 233333346778888999
Q ss_pred HHHHHHHHHHHHhcCCeEeec-C-Ce--e--EEEEecCCcHHHh-----hceeec--------c----------------
Q 011842 374 LRNAHYLKDRLLDAGISAMLN-E-LS--S--TVVFERPQDEEFV-----RRWQLA--------C---------------- 418 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~-~-~~--~--iv~f~~~~~~~~~-----~~~~l~--------~---------------- 418 (476)
.++++++.+.|++.+ ..+.. + .. + .+.+..++.+.+. +++.+. +
T Consensus 254 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (373)
T 3frk_A 254 RKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPI 332 (373)
T ss_dssp HHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHH
T ss_pred HHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHH
Confidence 999999999998887 33321 1 11 1 2223333322222 122111 0
Q ss_pred ----cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 ----QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 ----~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
....+|+++++.+|++|||+++++|+++.
T Consensus 333 ~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 333 AEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 01579999999999999999999998754
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=203.42 Aligned_cols=286 Identities=11% Similarity=0.012 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCe--------
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRME-------- 207 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~-------- 207 (476)
+..++++++.+|+. .|++.+...+++|+|+++++..+ .+... |++.|++++++|.++...++..|++
T Consensus 112 g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~--~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~ 186 (449)
T 3qgu_A 112 GQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFG--SKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGF 186 (449)
T ss_dssp CCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHC--SSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSB
T ss_pred CcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhC--CCCEEEEcCCCChhHHHHHHHcCCccccccccc
Confidence 45688888888876 56654455799999999998877 55544 8999999999999999999999998
Q ss_pred --EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 208 --CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 208 --v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
++.+|++.++.++.+ +++. +++ .+|+++++.|++|.+.+ +++|+++|++||+ ++++|++|+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~--~~~---~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~-----~li~Dea~~~~~ 255 (449)
T 3qgu_A 187 DGIEYMVCNPDNHFFPD-LSKA--KRT---DIIFFCSPNNPTGAAATRAQLTELVNFARKNGS-----ILVYDAAYALYI 255 (449)
T ss_dssp TTEEEEECCGGGTTCCC-GGGC--CCC---SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGGGC
T ss_pred ceeEEEecccccCCcCC-hhHc--CCC---CEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCc-----EEEEEcchHhhh
Confidence 999999754333322 1111 233 37777889999999865 8889999999999 999999998765
Q ss_pred ccccccCCCCCC--cccccEEEEcCCCCCC-CCCCceeEEeehhhhhh--------hcCCccccCCCCCcccCCCCChhH
Q 011842 283 MPFVKKAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINV--------LSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 283 ~~~~~~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~--------l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
.......+...+ ....+++..+++|+++ .++++|++++++++++. +.....+ .. .....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~ 325 (449)
T 3qgu_A 256 SNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTT--------CF--NGASN 325 (449)
T ss_dssp CCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHH--------SC--CCCCH
T ss_pred cCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhc--------cc--CCCCH
Confidence 532111111112 1236788899999997 78999999998876431 1000000 00 01224
Q ss_pred HHHHHHHHHhCh---hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHH----hh--ceeec---
Q 011842 352 IFLWYTLNRKGY---KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEF----VR--RWQLA--- 417 (476)
Q Consensus 352 l~~~~~l~~~g~---~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~----~~--~~~l~--- 417 (476)
+.+.++...+.. +.+++..++..+++++|.+.|++.|+....+..++++.+..+. ..++ .+ ++.+.
T Consensus 326 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~ 405 (449)
T 3qgu_A 326 IVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGS 405 (449)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecch
Confidence 555555555533 4467788889999999999999998766555556777777652 2222 22 34332
Q ss_pred ----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 ----CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 ----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
...+++|+++. .|+++|+.+++.|+++.++
T Consensus 406 ~f~~~~~~~iRis~~--~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 406 GYGPAGEGFVRASAF--GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp GGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred HhCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 12478999853 4999999999999887654
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=202.96 Aligned_cols=271 Identities=14% Similarity=0.079 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~ 214 (476)
....++++.+++++|.+ ..+++++|++|+..++.++.. +++.|+++.+.|.++...+ +..|++++.++.+
T Consensus 65 ~~~~~l~~~la~~~g~~----~~i~~~sG~~a~~~~l~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 138 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE----AGLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhc--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 55667778888889876 267777889999999988754 8899999999999987765 6679999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|++++ .+|+++++++++|.+.|+++|+++|++||+ ++|+|++|+.+.... ..
T Consensus 139 -----d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~D~~~~~~~~~~-------~~ 198 (398)
T 1gc0_A 139 -----DLQALEAAMTPAT---RVIYFESPANPNMHMADIAGVAKIARKHGA-----TVVVDNTYCTPYLQR-------PL 198 (398)
T ss_dssp -----CHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHGGGTC-----EEEEECTTTHHHHCC-------GG
T ss_pred -----CHHHHHHhcCCCC---eEEEEECCCCCCcccccHHHHHHHHHHcCC-----EEEEECCCcccccCC-------ch
Confidence 8999999987544 488889999999999999999999999999 999999998655421 11
Q ss_pred cccccEEEEcCCCCCCCCCC--ceeEEeehhhhh-hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP--CGVQITRMEHIN-VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~-~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
...+|+++.|+||+++.|.. .|+++++++.+. .+.....++ ..++ ...+.+|++++.+ +.+..+++
T Consensus 199 ~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~l--~~~~~~~~ 267 (398)
T 1gc0_A 199 ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDM------TGAV---LSPHDAALLMRGI--KTLNLRMD 267 (398)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHH------TCCC---CCHHHHHHHHHHH--TTHHHHHH
T ss_pred hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhcc------CCCC---CCHHHHHHHHhcc--chHHHHHH
Confidence 12489999999999997654 599999887554 332211110 0111 1245566665554 45677888
Q ss_pred HHHHHHHHHHHHHHhcCCeE-e-ec----------------CCeeEEEEecCCcH----HHhhceee---c---------
Q 011842 372 KCLRNAHYLKDRLLDAGISA-M-LN----------------ELSSTVVFERPQDE----EFVRRWQL---A--------- 417 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~-~-~~----------------~~~~iv~f~~~~~~----~~~~~~~l---~--------- 417 (476)
+..++++++.+.|++.+... + .+ ...+++.|..++.. .+.+++.+ .
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl 347 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESL 347 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCccee
Confidence 88889999999998865321 1 11 13577888775431 22222211 1
Q ss_pred ---c------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 ---C------------------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 ---~------------------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+ ..+.+|+++...+++++|+.|.++|+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 348 AQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 1 0368999999999999999999999764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=202.79 Aligned_cols=283 Identities=12% Similarity=0.049 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CCCc
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-ISGE 218 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~g~ 218 (476)
..++++.+++++|.+ .+++|+|||+|+..++.++ .. +++.|+++.++|.++..+++..|++++.++++ +++.
T Consensus 58 ~~~l~~~la~~~~~~----~~i~~~~gt~al~~~l~~~~~~--~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (391)
T 3dr4_A 58 IVEFEKAFADYCGVK----HAIACNNGTTALHLALVAMGIG--PGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFN 131 (391)
T ss_dssp HHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHTCC--TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCS
T ss_pred HHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccC
Confidence 334555567777776 3899999999999998887 44 89999999999999999999999999999998 5688
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
+|+++|++++.+++ .+|++ ++++|.+.|+++|.++|++||+ ++++|++|+.+..........+ ..+
T Consensus 132 ~d~~~l~~~~~~~~---~~v~~---~n~tG~~~~~~~i~~l~~~~~~-----~li~D~a~~~g~~~~~~~~~~~---~di 197 (391)
T 3dr4_A 132 LDAAKLEALITPRT---KAIMP---VHLYGQICDMDPILEVARRHNL-----LVIEDAAEAVGATYRGKKSGSL---GDC 197 (391)
T ss_dssp BCGGGSGGGCCTTE---EEECC---BCGGGCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEETTEETTSS---SSE
T ss_pred cCHHHHHHhcCCCc---eEEEE---ECCCCChhhHHHHHHHHHHcCC-----EEEEECcccccceECCeeeccc---CCE
Confidence 99999999886544 35553 4688999999999999999999 9999999985443322211111 125
Q ss_pred cEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCC--C--CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 299 GSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLAS--R--DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 299 Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~--~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++++++.||++++ ...|+++++++ +.+.+.....+-.. . .....+....... +.+++.....+++++..++.
T Consensus 198 ~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~--l~aa~~~~~~~~~~~~~~~~ 274 (391)
T 3dr4_A 198 ATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTN--IQAAIGLAQLERVDEHLAAR 274 (391)
T ss_dssp EEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCH--HHHHHHHHHHHTHHHHHHHH
T ss_pred EEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 6666778899986 55778877765 43332110000000 0 0001111111122 23333333346778889999
Q ss_pred HHHHHHHHHHHHhcCCeEeec--CC---e--eEEEEecCC-----cHHHhh-----ceeecc------------------
Q 011842 374 LRNAHYLKDRLLDAGISAMLN--EL---S--STVVFERPQ-----DEEFVR-----RWQLAC------------------ 418 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~~~~~--~~---~--~iv~f~~~~-----~~~~~~-----~~~l~~------------------ 418 (476)
.++++++.+.|++.++....+ +. . .++.+..+. ..++.+ ++.+..
T Consensus 275 ~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~ 354 (391)
T 3dr4_A 275 ERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDD 354 (391)
T ss_dssp HHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTT
T ss_pred HHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCC
Confidence 999999999999987655433 11 1 233444432 223221 222110
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
....+|+++++.+|+||||+++++|+++
T Consensus 355 ~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 355 LKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp CHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 1257899999999999999999999764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-22 Score=204.20 Aligned_cols=270 Identities=16% Similarity=0.146 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~ 214 (476)
....++++++++++|.+. .+++++|++|+..++.+... +|+.|+++.+.|.++... ++..|++++.++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~~----~v~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAES----TLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred hHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 556677788899998852 56677778999999887654 899999999999887664 45679999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|++++ +.+|++++++|++|.+.|+++|+++|++||+ ++|+|++|+.++.. .+ +
T Consensus 188 -----d~~~l~~ai~~~t--v~lV~le~p~NptG~v~dl~~I~~la~~~g~-----~livD~a~~~~~~~----~~-~-- 248 (445)
T 1qgn_A 188 -----DVGALELALNQKK--VNLFFTESPTNPFLRCVDIELVSKLCHEKGA-----LVCIDGTFATPLNQ----KA-L-- 248 (445)
T ss_dssp -----CHHHHHHHHHHSC--EEEEEEESSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTC----CT-T--
T ss_pred -----CHHHHHHHhccCC--CCEEEEeCCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCCcccccC----Cc-c--
Confidence 8999999998776 1388889999999999999999999999999 99999999755432 11 1
Q ss_pred cccccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
...+|+++.|+||+++++. .+|+++.++++++.+...... .++. ..++..|.+++. .+.+..++++
T Consensus 249 ~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~--------~g~~--~~~~~a~~~~~~--l~~l~~r~~~ 316 (445)
T 1qgn_A 249 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI--------LGGA--LNPNAAYLIIRG--MKTLHLRVQQ 316 (445)
T ss_dssp TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH--------HCCC--CCHHHHHHHHHH--GGGHHHHHHH
T ss_pred ccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHH--------hCCC--CCHHHHHHHHHh--HHHHHHHHHH
Confidence 1248999999999998432 399999998876655321111 1111 123445555543 3556777888
Q ss_pred HHHHHHHHHHHHHhcCCe-EeecC-----------------CeeEEEEecCCc----HHHhhcee---ec------c---
Q 011842 373 CLRNAHYLKDRLLDAGIS-AMLNE-----------------LSSTVVFERPQD----EEFVRRWQ---LA------C--- 418 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~-~~~~~-----------------~~~iv~f~~~~~----~~~~~~~~---l~------~--- 418 (476)
..++++++.+.|++.+.. .+..| ..+++.|..++. ..+.+.+. +. |
T Consensus 317 ~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~ 396 (445)
T 1qgn_A 317 QNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIV 396 (445)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEE
T ss_pred HHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceee
Confidence 888899999999987643 23222 357888887643 22333321 10 0
Q ss_pred ---------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 ---------------------QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ---------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+.+|+++. .||+|+++++|+++.+.
T Consensus 397 ~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 397 DQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp ECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1268999887 57899999999988753
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=205.48 Aligned_cols=291 Identities=8% Similarity=-0.088 Sum_probs=195.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH--HHHHHHHhhCC----------CcEEEecCCCchHHHHHHHH
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL--HGILVGREVFP----------DGILYASRESHYSVFKAARM 203 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~--~al~aa~~~~p----------~~~Vl~s~~~H~S~~~~~~~ 203 (476)
+..++++++.++ ++++++ .+++|+|++++++ .++.+.....| ++.|+++.++|.++...++.
T Consensus 79 g~~~lr~~ia~~----~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~ 152 (427)
T 3ppl_A 79 GIVDIRQIWADL----LGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITER 152 (427)
T ss_dssp CCHHHHHHHHHH----HTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH
T ss_pred CcHHHHHHHHHH----hCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH
Confidence 456666665554 477643 5999999999994 56666554224 89999999999999999999
Q ss_pred cCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEe-eCCCccccccCHH---HHHHHH-HHhCCCCCceEEEEecCc
Q 011842 204 YRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVN-IGTTVKGAVDDLD---LVIQTL-EESGFTQDRFYIHCDGAL 278 (476)
Q Consensus 204 ~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t-~gtt~tG~id~l~---~I~~ia-~~~g~~~~~~~lhvD~a~ 278 (476)
.|++++.+|++++| +|+++|++++.. .++.+|+++ +++|+||.+.|.+ +|+++| ++||+ ++|+|++|
T Consensus 153 ~g~~~~~v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~-----~ii~De~y 224 (427)
T 3ppl_A 153 FGFEMISVPMNEDG-PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDF-----RVVWDNAY 224 (427)
T ss_dssp TTCEEEEEEEETTE-ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-----EEEEECTT
T ss_pred cCCEEEEeCCCCCC-CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCC-----EEEEECCC
Confidence 99999999998766 999999999942 223466555 7799999998776 888888 99999 99999999
Q ss_pred ccccccccccC--CCCCC-----cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 279 FGLMMPFVKKA--PKVSF-----KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 279 ~g~~~~~~~~~--~~~~~-----~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+.+.+...... +.+.. ....+++..|++|+++.++++|+++.++++++.+.....+.. .+ ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~-------~~---~~~ 294 (427)
T 3ppl_A 225 AVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRG-------IG---PNK 294 (427)
T ss_dssp TTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHC-------SC---CCH
T ss_pred cccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhccc-------CC---CCH
Confidence 87544321110 11111 112567888999998889999999999887665532222110 01 123
Q ss_pred HHHHHHHHHhCh-----hcHHHHHHHHHHHHHHHHHHHHh----cCCeEe-ecCCeeEEEEecCC--cHHHh-----hce
Q 011842 352 IFLWYTLNRKGY-----KGFQKEVQKCLRNAHYLKDRLLD----AGISAM-LNELSSTVVFERPQ--DEEFV-----RRW 414 (476)
Q Consensus 352 l~~~~~l~~~g~-----~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~-~~~~~~iv~f~~~~--~~~~~-----~~~ 414 (476)
+.++++...+.. ..+++..+...++++++.+.|.+ .+...+ .+...+++.+..+. ...+. ++.
T Consensus 295 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv 374 (427)
T 3ppl_A 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGI 374 (427)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCC
Confidence 445555444433 22444455555666666666654 333333 34456667777653 23332 223
Q ss_pred eecc-----------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 415 QLAC-----------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 415 ~l~~-----------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+.. ..+.+|+++... |+++|+.+++.|.++.++..
T Consensus 375 ~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 375 ALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp ECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 3321 347899988544 99999999999999887654
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=202.01 Aligned_cols=284 Identities=14% Similarity=0.076 Sum_probs=192.8
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-Ccc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-GEI 219 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g~~ 219 (476)
.++++.+++++|.+ .+++|+|||+|+..++.++ .. |++.|+++.++|.++..+++..|++++.++.+++ +.+
T Consensus 42 ~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 115 (393)
T 1mdo_A 42 QELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIG--EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMV 115 (393)
T ss_dssp HHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCB
T ss_pred HHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCC--CCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCC
Confidence 34455566777765 3899999999999998887 43 8999999999999999999999999999999864 689
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
|+++|++++++++ .+|++++ ++|.+.|+++|.++|++||+ ++++|++|+.+....... +. . .|
T Consensus 116 d~~~l~~~l~~~~---~~v~~~~---~~G~~~~~~~i~~l~~~~~~-----~li~D~a~~~g~~~~~~~---~~--~-~d 178 (393)
T 1mdo_A 116 TPEHIEAAITPQT---KAIIPVH---YAGAPADLDAIYALGERYGI-----PVIEDAAHATGTSYKGRH---IG--A-RG 178 (393)
T ss_dssp CHHHHHHHCCTTE---EEECCBC---GGGCCCCHHHHHHHHHHHTC-----CBCEECTTCTTCEETTEE---TT--S-SS
T ss_pred CHHHHHHhcCCCc---eEEEEeC---CCCCcCCHHHHHHHHHHcCC-----eEEEECccccCCeECCee---cC--C-CC
Confidence 9999999997543 3665543 68999999999999999999 999999998543322211 11 1 68
Q ss_pred EEEEcCC--CCCCCCCCceeEEee-hhhhhhhcCCccc----------cCCCCCcc----cCCCCChhHHHHHHHHHHhC
Q 011842 300 SVSVSGH--KFVGCPMPCGVQITR-MEHINVLSSNVEY----------LASRDATI----MGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 300 si~~s~h--K~l~~p~~~G~l~~~-~~~~~~l~~~~~y----------l~~~~~~~----~~sr~~~~~l~~~~~l~~~g 362 (476)
+++.|+| |++++ .++|+++.+ +++.+.+.....+ .......+ .|.......+....++..
T Consensus 179 ~~~~S~~k~K~l~~-~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-- 255 (393)
T 1mdo_A 179 TAIFSFHAIKNITC-AEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ-- 255 (393)
T ss_dssp EEEEECCTTSSSCS-SSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--
T ss_pred eEEEeCCCCCcccc-ccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--
Confidence 9999999 99975 478888886 4555443211000 00000111 111011223433333332
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC------CeeEEEEecC------CcHHHhh-----ceeec----c---
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE------LSSTVVFERP------QDEEFVR-----RWQLA----C--- 418 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~------~~~iv~f~~~------~~~~~~~-----~~~l~----~--- 418 (476)
.+++++..++..++++++.+.|++.++.....+ ...++.+..+ ...++.+ ++.+. +
T Consensus 256 l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~ 335 (393)
T 1mdo_A 256 LQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHT 335 (393)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCcccc
Confidence 355778888888999999999999884332222 2235666655 2222321 22221 1
Q ss_pred -------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 419 -------------------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 419 -------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
....+|+++++.+|++||++++++|+++.+...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 336 QKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp SHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred ChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 123799999999999999999999998865543
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=202.57 Aligned_cols=283 Identities=16% Similarity=0.153 Sum_probs=184.6
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcCCeEEEEeCCCCCc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYRMECVKVDCLISGE 218 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~~~g~ 218 (476)
.++++++++++|.+. .++|+|||+|+..++.+... ||+.|++++++|.+... .++..|++++.+ .++++.
T Consensus 41 ~~l~~~la~~~g~~~----~~~~~~gt~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~ 113 (347)
T 1jg8_A 41 NELERLAAETFGKEA----ALFVPSGTMGNQVSIMAHTQ--RGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGA 113 (347)
T ss_dssp HHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHCC--TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTE
T ss_pred HHHHHHHHHHhCCce----EEEecCcHHHHHHHHHHhcC--CCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCc
Confidence 345566778888752 78999999999988877655 89999999999987543 567789999888 556788
Q ss_pred cCHHHHHHHHHcC---CCCcEEEEEeeCCCcc-ccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 219 IDCADFKAKLLQN---KDKPAIINVNIGTTVK-GAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 219 ~D~~~Le~~l~~~---~~~p~~vv~t~gtt~t-G~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+|+++|+++|++. ..++.+|++++++|++ |.+.| +++|+++|++||+ ++++|++|..+..... ....
T Consensus 114 ~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~-----~li~D~a~~~~~~~~~-~~~~ 187 (347)
T 1jg8_A 114 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI-----NVHIDGARIFNASIAS-GVPV 187 (347)
T ss_dssp ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-----EEEEEETTHHHHHHHH-CCCH
T ss_pred cCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCC-----EEEeehhhhhcchhhc-CCCh
Confidence 9999999999752 1235688888999999 99855 5789999999999 9999999742111000 0000
Q ss_pred CCCcccccEEEEcCCCCCCCCCCce-eEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCG-VQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G-~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
......+|++++++||+++.| .| +++.++++++.+.....+.... .............+++.. .+ .+
T Consensus 188 ~~~~~~~d~~~~s~sK~l~~~--~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~-~~----~~ 255 (347)
T 1jg8_A 188 KEYAGYADSVMFCLSKGLCAP--VGSVVVGDRDFIERARKARKMLGGG-----MRQAGVLAAAGIIALTKM-VD----RL 255 (347)
T ss_dssp HHHHHTCSEEEEESSSTTCCS--SCEEEEECHHHHHHHHHHHHHHTCC-----CSSTHHHHHHHHHHHHHS-ST----TH
T ss_pred HHhcccccEEEEecccccCCC--ceEEEEcCHHHHHHHHHHHHHcCCc-----hhHHHHHHHHHHHHHHHH-HH----HH
Confidence 111123788888999999876 45 4555665554432211121110 011111111111223321 12 23
Q ss_pred HHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecCC----cHHHhh-----ceeec-ccCCEEEEEEcCCCCHHHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERPQ----DEEFVR-----RWQLA-CQGNIAHVVVMPNVTIDKLDDF 439 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~~----~~~~~~-----~~~l~-~~~~~lRv~~~~~~T~edid~~ 439 (476)
++..++++++.+.|++.|+... .++.++++.+..+. ..++.+ +..+. ...+.+|++++..+|++|++++
T Consensus 256 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~ 335 (347)
T 1jg8_A 256 KEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEA 335 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHH
Confidence 3344677888888888765432 24456777777652 233332 22232 2346899999999999999999
Q ss_pred HHHHHHHHHH
Q 011842 440 LNELIENRST 449 (476)
Q Consensus 440 ~~~l~~~~~~ 449 (476)
+++|+++.++
T Consensus 336 ~~~l~~~l~~ 345 (347)
T 1jg8_A 336 LNIFEKLFRK 345 (347)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=204.77 Aligned_cols=299 Identities=10% Similarity=-0.034 Sum_probs=207.9
Q ss_pred hhhHHHHHHHHHHHHHHcC-CCCCcccEEEcCCchhHHHHHHHHHHhhCCC----cEEEecCCCchHHHHHHHHcCCeEE
Q 011842 135 VHSRQFEVGVLDWFARLWE-LENNEYWGYITNCGTEGNLHGILVGREVFPD----GILYASRESHYSVFKAARMYRMECV 209 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g-~~~~~~~g~~t~ggt~An~~al~aa~~~~p~----~~Vl~s~~~H~S~~~~~~~~G~~v~ 209 (476)
.+..++++++.+++.+..| ++.+..++++|+|+++++..++.+... ++ +.|+++.+.|.++..+++.+|++++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~--~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v 206 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVS--GGGKSRTGVMIPIPQYPLYSAVISELDAIQV 206 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCC--CCGGGSEEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcC--CCCCCCCEEEEeCCCchhHHHHHHHcCCEEE
Confidence 3667999999999999885 764556799999999999999888765 55 4999999999999999999999999
Q ss_pred EEeCCCC--CccCHHHHHHHHHcCCC--CcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 210 KVDCLIS--GEIDCADFKAKLLQNKD--KPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 210 ~v~~~~~--g~~D~~~Le~~l~~~~~--~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
.++++++ +.+|+++|+++|++... ++.+|+++++.|+||.+ +++++|+++|++||+ ++++|++|+.+.
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~-----~li~De~y~~~~ 281 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKL-----FLLADEVYQDNV 281 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCB
T ss_pred EeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCc-----EEEEEcCccccc
Confidence 9999854 58999999999986421 34577778999999999 457889999999999 999999998766
Q ss_pred cccc-ccCCCCCCc--------cccc-EEEEcCCCCCC--CCCCceeEEe---ehhhhhhhcCCccccCCCCCcccCCCC
Q 011842 283 MPFV-KKAPKVSFK--------KPIG-SVSVSGHKFVG--CPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRN 347 (476)
Q Consensus 283 ~~~~-~~~~~~~~~--------~~~D-si~~s~hK~l~--~p~~~G~l~~---~~~~~~~l~~~~~yl~~~~~~~~~sr~ 347 (476)
+... ...+..... ..+. ++..|++|.+. +++++|++++ ++++++.+...... ..+
T Consensus 282 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~--------~~~-- 351 (498)
T 3ihj_A 282 YSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV--------RLC-- 351 (498)
T ss_dssp CCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHH--------SCC--
T ss_pred cCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhc--------cCC--
Confidence 5422 111111110 1122 45568999983 7899999984 55555544221110 011
Q ss_pred ChhHHHHHHHHHHhCh------------hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE-ecCC--------
Q 011842 348 GHAPIFLWYTLNRKGY------------KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF-ERPQ-------- 406 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~------------~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f-~~~~-------- 406 (476)
...+.+++....+.. +..+++.+++.++++++.+.|++.+...+.++..+++.| +...
T Consensus 352 -~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~ 430 (498)
T 3ihj_A 352 -PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAA 430 (498)
T ss_dssp -CCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHH
Confidence 123444443333321 123456677888999999999998444455555555554 2221
Q ss_pred ------cHHH-----hh--ceee-c-------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 407 ------DEEF-----VR--RWQL-A-------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 407 ------~~~~-----~~--~~~l-~-------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
++++ .+ +..+ + .....+|+++. .++++++.+++.|.++.+++++.
T Consensus 431 ~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 431 QAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp HHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 2222 1 12357999884 79999999999999998888764
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-21 Score=197.32 Aligned_cols=280 Identities=14% Similarity=0.066 Sum_probs=188.3
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCccCHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEIDCA 222 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~D~~ 222 (476)
+++.+++++|.+ .+++|+|||+|+..++.++. +++.|+++.++|.++..+++..|++++.+++++ ++.+|++
T Consensus 57 l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~---~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~ 129 (424)
T 2po3_A 57 FEERVAGLAGVR----HAVATCNATAGLQLLAHAAG---LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPD 129 (424)
T ss_dssp HHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT---CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHH
T ss_pred HHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC---CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHH
Confidence 344456666764 38999999999999998874 679999999999999999999999999999986 6789999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcc-cccccccccCCCCCCcccccEE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALF-GLMMPFVKKAPKVSFKKPIGSV 301 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~-g~~~~~~~~~~~~~~~~~~Dsi 301 (476)
+|++++.+++ .+|++++ ++|.+.++++|.++|++||+ ++++|++|+ +..+. ... +. ...|++
T Consensus 130 ~l~~~i~~~~---~~v~~~~---~tG~~~~l~~i~~la~~~~~-----~li~Dea~~~g~~~~-~~~---~~--~~~di~ 192 (424)
T 2po3_A 130 QVAAAVTPRT---SAVVGVH---LWGRPCAADQLRKVADEHGL-----RLYFDAAHALGCAVD-GRP---AG--SLGDAE 192 (424)
T ss_dssp HHGGGCCTTE---EEEEEEC---GGGCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEET-TEE---TT--SSSSEE
T ss_pred HHHHhhCcCC---cEEEEEC---CCCCcCCHHHHHHHHHHcCC-----EEEEECccccCCeEC-Cee---cc--cccCEE
Confidence 9999886543 3666654 68999999999999999999 999999998 44432 111 11 114677
Q ss_pred EEcCC--CCCCCCCCceeEEee-hhhhhhhcCCccccCCCCCc--ccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHH
Q 011842 302 SVSGH--KFVGCPMPCGVQITR-MEHINVLSSNVEYLASRDAT--IMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRN 376 (476)
Q Consensus 302 ~~s~h--K~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~--~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~ 376 (476)
+.|+| |++++ +++|+++.+ +++++.+.....+......+ ..+.......+..+.++.. .+.+++..++..++
T Consensus 193 ~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--~~~~~~~~~~~~~~ 269 (424)
T 2po3_A 193 VFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS--LDAFPEVIDRNRRN 269 (424)
T ss_dssp EEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred EEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 77766 98875 789999998 55554442211111000000 1111111233444444433 35677788888899
Q ss_pred HHHHHHHHHhc-CCeEeecC-C--e--eEEEEecC------CcHHHh-----hceeec--cc------------------
Q 011842 377 AHYLKDRLLDA-GISAMLNE-L--S--STVVFERP------QDEEFV-----RRWQLA--CQ------------------ 419 (476)
Q Consensus 377 a~~l~~~L~~~-g~~~~~~~-~--~--~iv~f~~~------~~~~~~-----~~~~l~--~~------------------ 419 (476)
++++.+.|++. ++.....+ . . .++.+..+ +..++. +++.+. +.
T Consensus 270 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~ 349 (424)
T 2po3_A 270 HAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLP 349 (424)
T ss_dssp HHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCH
T ss_pred HHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCCh
Confidence 99999999887 44333212 2 1 34445444 222222 122221 11
Q ss_pred ------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 420 ------GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 420 ------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
...+|+.++..+|++||++++++|+++.+..
T Consensus 350 ~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 350 HTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp HHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0127777779999999999999999887554
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-22 Score=202.75 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~ 214 (476)
...+++++++++++|.+ .+++|+|||+|+..++.++.. +++.|+++.++|.++.... +..|++++.++.
T Consensus 56 ~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 128 (412)
T 2cb1_A 56 PTAKALEERLKALEGAL----EAVVLASGQAATFAALLALLR--PGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP- 128 (412)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTTCC--TTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-
T ss_pred hHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-
Confidence 45667778889999875 389999999999999987744 8999999999999876653 456899999986
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|++++ .+|+++++++++|.+.|+++|+++|++||+ ++|+|++|+.+.... .. .
T Consensus 129 -----~~~~l~~~i~~~~---~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~-----~li~D~~~~~~~~~~-~~---~-- 189 (412)
T 2cb1_A 129 -----EPEAVREALSAKT---RAVFVETVANPALLVPDLEALATLAEEAGV-----ALVVDNTFGAAGALC-RP---L-- 189 (412)
T ss_dssp -----SHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTC-----EEEEECGGGTTTTSC-CG---G--
T ss_pred -----CHHHHHHHhccCC---eEEEEeCCCCCCcccccHHHHHHHHHHcCC-----EEEEECCCccccccC-Cc---c--
Confidence 4889999987644 488889999999999999999999999999 999999998652111 00 1
Q ss_pred cccccEEEEcCCCCCCCCCC-ceeEEeeh-hhh----hhhcCCc-------------cccCC-CCC--cccCCCCChhHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP-CGVQITRM-EHI----NVLSSNV-------------EYLAS-RDA--TIMGSRNGHAPI 352 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~-~G~l~~~~-~~~----~~l~~~~-------------~yl~~-~~~--~~~~sr~~~~~l 352 (476)
...+|+++.|+||++++|.+ +|++++++ +.. ..+.... .+... ... ...+. ...+.
T Consensus 190 ~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~--~~~~~ 267 (412)
T 2cb1_A 190 AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM--ALSPF 267 (412)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC--CCCHH
T ss_pred ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC--CCChH
Confidence 12389999999999987654 88887765 310 0000000 00000 000 00111 12345
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecC-----------------CeeEEEEecCCcHH---Hh
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNE-----------------LSSTVVFERPQDEE---FV 411 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~-----------------~~~iv~f~~~~~~~---~~ 411 (476)
..|..+.. .+.+.+++++..+++++|.+.|.+. ++..+..| ..+++.|...+.+. +.
T Consensus 268 ~a~~~~~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l 345 (412)
T 2cb1_A 268 NAYLLFQG--LETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFL 345 (412)
T ss_dssp HHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHH
T ss_pred HhHHHHcC--CchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHH
Confidence 55555543 3556778888889999999999986 44434222 24688888732221 22
Q ss_pred hce--ee------------ccc------------------CCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 412 RRW--QL------------ACQ------------------GNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 412 ~~~--~l------------~~~------------------~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+.. .+ .|. .+.+|++++..+|+++|+.|+++|++
T Consensus 346 ~~~~i~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 346 GAIRLLKAANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp HHCSSEECSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred HhCCeeeecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 211 11 110 46899999999999999999999864
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=194.05 Aligned_cols=277 Identities=10% Similarity=-0.010 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISG 217 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g 217 (476)
.+++++ +++++|.++ ..+++|+|+|+++..++.++ +++.|++..++|.++...++..|++++.+|.+++.
T Consensus 62 ~~l~~~----la~~~~~~~--~~v~~~~g~~~al~~~~~~~----~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (364)
T 1lc5_A 62 FHLHQA----LARHHQVPA--SWILAGNGETESIFTVASGL----KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREAD 131 (364)
T ss_dssp HHHHHH----HHHHHTSCG--GGEEEESSHHHHHHHHHHHH----CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHH----HHHHHCcCH--HHEEECCCHHHHHHHHHHHc----CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCccc
Confidence 355555 555567764 35999999999999988877 45899999999999999999999999999987533
Q ss_pred ccC-HHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 218 EID-CADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 218 ~~D-~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
.++ ++++.+.+.+++ .+|++++++|++|.+.| +++|+++|++||+ ++++|++|+.+.... .+.+.
T Consensus 132 ~~~~l~~~~~~~~~~~---~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~---~~~~~ 200 (364)
T 1lc5_A 132 GWQLTDAILEALTPDL---DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI-----NLILDEAFIDFIPHE---TGFIP 200 (364)
T ss_dssp TTCCCTTHHHHCCTTC---CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGGGSTTC---CCSGG
T ss_pred ccchhHHHHHhccCCC---CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCc-----EEEEECcChhhccCc---cchhh
Confidence 344 344444443333 37777889999999988 9999999999999 999999998765421 11122
Q ss_pred C-c-ccccEEEEcCCCCCC-CCCCceeEE-eehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHH
Q 011842 294 F-K-KPIGSVSVSGHKFVG-CPMPCGVQI-TRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQK 368 (476)
Q Consensus 294 ~-~-~~~Dsi~~s~hK~l~-~p~~~G~l~-~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~ 368 (476)
. . ...++++.++||+++ .++++|+++ .++++++.+..... + .+ ...+.++++...+.. +.+++
T Consensus 201 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~-------~--~~---~~~~~~~~~~~~l~~~~~~~~ 268 (364)
T 1lc5_A 201 ALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-------P--WS---VNALAALAGEVALQDSAWQQA 268 (364)
T ss_dssp GCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC-------T--TC---SCHHHHHHHHHGGGCHHHHHH
T ss_pred HhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC-------C--CC---CCHHHHHHHHHHHhCcHHHHH
Confidence 1 1 236788899999997 667899999 88777655532111 0 11 124555666555543 34677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc-HHHh-----hceeecc-------cCCEEEEEEcCCCCHHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD-EEFV-----RRWQLAC-------QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~-~~~~-----~~~~l~~-------~~~~lRv~~~~~~T~ed 435 (476)
..++..++++++.+.|++.+...+.++..+++.+..+.+ ..+. +++.+.. ..+.+|+++. +.++
T Consensus 269 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~ 345 (364)
T 1lc5_A 269 TWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQ 345 (364)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHH
Confidence 778888899999999998733344455566666766532 1221 2333321 1468999964 6999
Q ss_pred HHHHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRSTW 450 (476)
Q Consensus 436 id~~~~~l~~~~~~~ 450 (476)
+++++++|+++.+.+
T Consensus 346 ~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 346 NERLLAALRNVLTGI 360 (364)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999886554
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=201.54 Aligned_cols=286 Identities=13% Similarity=0.038 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH---HHHHHHcCCe--EEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV---FKAARMYRME--CVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~---~~~~~~~G~~--v~~v~~ 213 (476)
.+|+.+++++++++|.++. -+++++||+|+..++.++.. +++.|++++++|.++ ...++..|+. .+.+++
T Consensus 69 ~~e~~ar~~la~~~g~~~~---~i~~~sGt~a~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (407)
T 2dkj_A 69 RVESLAIERAKALFGAAWA---NVQPHSGSQANMAVYMALME--PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGV 143 (407)
T ss_dssp HHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCcc---eEEecchHHHHHHHHHHhcC--CCCEEEEecccccCccchHHHHHhcCceEEEEecCC
Confidence 5666677899999998732 35556678899999888854 899999999999887 3555566664 444444
Q ss_pred C-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 214 L-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+ .++.+|+++|++++++ +++ +|+++++.+ |.+.|+++|.++|++||+ ++++|++|+.+..+.......
T Consensus 144 ~~~~~~~d~~~l~~~l~~~~~~---~v~~~~p~~--~~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~~~~~~ 213 (407)
T 2dkj_A 144 RPDTELIDLEEVRRLALEHRPK---VIVAGASAY--PRFWDFKAFREIADEVGA-----YLVVDMAHFAGLVAAGLHPNP 213 (407)
T ss_dssp CTTTSSCCHHHHHHHHHHHCCS---EEEECCSSC--CSCCCHHHHHHHHHHHTC-----EEEEECTTTHHHHHTTCSCCC
T ss_pred CcccCccCHHHHHHHHhhcCCe---EEEEecccc--CCCCCHHHHHHHHHHcCC-----EEEEEccccccccccCccCCc
Confidence 4 3678999999999985 554 666655655 478899999999999999 999999998644322221111
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
+ ...|+++.++||++++|. +|+++++ +++++.+....... ..++.+......+.+++......++++..
T Consensus 214 ~---~~~di~~~s~sK~l~g~~-~G~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 283 (407)
T 2dkj_A 214 L---PYAHVVTSTTHKTLRGPR-GGLILSNDPELGKRIDKLIFPG------IQGGPLEHVIAGKAVAFFEALQPEFKEYS 283 (407)
T ss_dssp T---TTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred c---ccccEEEEeccccCCCCC-ceEEEECCHHHHHHHHhhhccc------ccCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1 237999999999988654 5999999 56665543211110 01222211122444555554446788899
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC----cHHHh-----hceeecc-----------cCCEEEEEEcC
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ----DEEFV-----RRWQLAC-----------QGNIAHVVVMP 429 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~----~~~~~-----~~~~l~~-----------~~~~lRv~~~~ 429 (476)
++..++++++.+.|++.|+....+ ...+++.+..+. ...+. +++.+.. ..+.+|++++.
T Consensus 284 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~ 363 (407)
T 2dkj_A 284 RLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPA 363 (407)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeeccc
Confidence 999999999999999987655432 356777776652 22222 2232211 13579998865
Q ss_pred ----CCCHHHHHHHHHHHHHHHHH
Q 011842 430 ----NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 430 ----~~T~edid~~~~~l~~~~~~ 449 (476)
.+|++|+++++++|+++.++
T Consensus 364 ~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 364 ITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp HHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhc
Confidence 48999999999999998765
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=201.49 Aligned_cols=297 Identities=9% Similarity=-0.069 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc--------------EEEec-CCCchHHHHH
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG--------------ILYAS-RESHYSVFKA 200 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~--------------~Vl~s-~~~H~S~~~~ 200 (476)
+..++++++.+++.+..|+..+...+++|+|+|+|+..++.++.. +++ .|+++ .++|..+...
T Consensus 84 g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 84 GDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE--EEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC--CCccccccccccccccceEEEeCCCCccchhhc
Confidence 467999999999998888765556799999999999999888765 665 66664 7788777653
Q ss_pred H------HHcCCeEEEEeCCC-CC----ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCC
Q 011842 201 A------RMYRMECVKVDCLI-SG----EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFT 266 (476)
Q Consensus 201 ~------~~~G~~v~~v~~~~-~g----~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~ 266 (476)
+ ...|..++.++.++ +| .+|+++|+++|...+.++.+|+++++++++|.+.| +++|+++|++||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~- 240 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDI- 240 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCC-
Confidence 2 33467788888775 33 79999999985431223457888889999999988 8999999999999
Q ss_pred CCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 267 QDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 267 ~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++|+|++|+.+.. ..............++++.++||+++.++++|+++.++++++.+.....+. ..+.
T Consensus 241 ----~li~De~~~~~~~-~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~-------~~~~ 308 (444)
T 3if2_A 241 ----PLIIDNAYGMPFP-NIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVV-------NLAP 308 (444)
T ss_dssp ----CEEEECTTCTTTT-CCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------HSSC
T ss_pred ----EEEEECCCCCccc-ccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhc-------cCCC
Confidence 9999999975321 111111011112367888999999877899999999888765553221111 0111
Q ss_pred CChhHHHHHHHHHHhChhc----HHH-HHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC----cHHHh--
Q 011842 347 NGHAPIFLWYTLNRKGYKG----FQK-EVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ----DEEFV-- 411 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g----~~~-~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~----~~~~~-- 411 (476)
+. +.+.++...+.... .++ ..++..++++++.+.|++. ++....+....++.+..+. ..++.
T Consensus 309 ~~---~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 385 (444)
T 3if2_A 309 TR---FGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYER 385 (444)
T ss_dssp CC---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHH
T ss_pred Ch---HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHH
Confidence 11 22222222221111 122 4445566777777777662 3333333444555555442 23332
Q ss_pred ---hceeec----cc-----------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 412 ---RRWQLA----CQ-----------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 412 ---~~~~l~----~~-----------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+++.+. +. .+.+|+++.. |+++|+.+++.|.++.+++++
T Consensus 386 l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 386 LKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp HHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 223331 11 1579998876 999999999999999888764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=195.44 Aligned_cols=278 Identities=12% Similarity=0.032 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--------CCCcEEEecCCCchHHHHHHHHcCC----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--------FPDGILYASRESHYSVFKAARMYRM---- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--------~p~~~Vl~s~~~H~S~~~~~~~~G~---- 206 (476)
+..+++++++++++|.+ .+++|+|||+|+..++.+++.. ..++.|++..++|.+....+..++.
T Consensus 78 ~~~~~l~~~la~~~g~~----~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 153 (392)
T 3ruy_A 78 DQLGPWYEKVAKLTNKE----MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEY 153 (392)
T ss_dssp TTHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTT
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhh
Confidence 45567778888888833 3999999999999999987753 2367999989888765544433322
Q ss_pred ---------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 ---------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 ---------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
++..++.+ |+++|+++|+++ +.+|+++++.+++|.+.| +++|.++|++||+ ++|
T Consensus 154 ~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~-----~li 220 (392)
T 3ruy_A 154 KRGFGPMLPGIIVIPYG-----DLEALKAAITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENV-----LFV 220 (392)
T ss_dssp TTTCCSCCSSEEEECTT-----CHHHHHHHCCTT---EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTC-----EEE
T ss_pred ccccCCCCCCCeeeCcc-----cHHHHHHHhccC---eEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCC-----EEE
Confidence 25555544 899999999744 348888889999999998 9999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|+++.... ... ..+... ..|++++| |+++++ +++|++++++++++.+...... . ..+.+ .
T Consensus 221 ~De~~~~~~~~g-~~~-~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~~~~~-----~--~~~~~---~ 286 (392)
T 3ruy_A 221 ADEIQTGLGRTG-KVF-ACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEPGSHG-----S--TFGGN---P 286 (392)
T ss_dssp EECTTTTTTTTS-SSS-GGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCTTSSC-----C--SSTTC---H
T ss_pred EeechhCCCccc-cch-hhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhccCCcC-----C--CCCCC---H
Confidence 999997543221 110 011111 26777765 988765 7899999998876554321110 1 11212 3
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC--eEeecCCeeEEEEecC-CcHHHh-----hceeec-ccCCE
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI--SAMLNELSSTVVFERP-QDEEFV-----RRWQLA-CQGNI 422 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~--~~~~~~~~~iv~f~~~-~~~~~~-----~~~~l~-~~~~~ 422 (476)
+.++++...+.....++..++..++++++.+.|++.+. ....++..+++.|..+ ...++. +++.+. ...+.
T Consensus 287 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~ 366 (392)
T 3ruy_A 287 LACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHENV 366 (392)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTTTE
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCCCE
Confidence 33333333332111256778888999999999998753 2223333455666544 233332 233333 34589
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+|++++..+|++++++++++|+++.
T Consensus 367 iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 367 IRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-21 Score=195.29 Aligned_cols=268 Identities=15% Similarity=0.129 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDC 213 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~ 213 (476)
.....++++.+++++|.+ ..++|+|||+|+..++.++.. +++.|+++.+.|.+....+ +..|++++.++.
T Consensus 65 ~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 138 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAMLR--PGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVAL 138 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCC
Confidence 355667788899999886 288999999999999987754 8999999999998877665 667999999998
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+ |+++|+++|.+++ .+|++.+++|++|.+.|+++|+++|++||+ ++|+|++|+.++.. . .
T Consensus 139 ~-----d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~la~~~g~-----~li~D~~~~~~~~~--~-----~ 198 (392)
T 3qhx_A 139 A-----DLDAVRAAIRPTT---RLIWVETPTNPLLSIADIAGIAQLGADSSA-----KVLVDNTFASPALQ--Q-----P 198 (392)
T ss_dssp T-----CHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTC-----EEEEECTTTCTTTC--C-----G
T ss_pred C-----CHHHHHHhhCCCC---eEEEEECCCCCCcEEecHHHHHHHHHHcCC-----EEEEECCCcccccC--C-----h
Confidence 6 8999999997654 488888999999999999999999999999 99999999754321 0 1
Q ss_pred CcccccEEEEcCCCCCCCC--CCceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCP--MPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
....+|+++.|+||+++.+ ..+|+++.++ ++.+.+....... +.. ..++..|.+++.+ +.+..++
T Consensus 199 ~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~--------g~~--~~~~~~~~~~~~l--~~l~~~~ 266 (392)
T 3qhx_A 199 LSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGA--------GAV--PGPFDAYLTMRGL--KTLVLRM 266 (392)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHH--------CCC--CCHHHHHHHHHHH--TTHHHHH
T ss_pred HHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHhhh--hHHHHHH
Confidence 1123899999999999965 3489999885 4544442211111 111 1245666666544 4567788
Q ss_pred HHHHHHHHHHHHHHHhcCCeE-eecCC-----------------eeEEEEecCCc----HHHhhceee------------
Q 011842 371 QKCLRNAHYLKDRLLDAGISA-MLNEL-----------------SSTVVFERPQD----EEFVRRWQL------------ 416 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~-~~~~~-----------------~~iv~f~~~~~----~~~~~~~~l------------ 416 (476)
++..++++++.+.|++.+... +..|. ..++.|..+++ ..+...+.+
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s 346 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES 346 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence 888999999999999876432 22221 35777877652 223322211
Q ss_pred ----c--------------ccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 417 ----A--------------CQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 417 ----~--------------~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
+ ...+.+|+++...+++++|+.|.++|
T Consensus 347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp EEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 0 01357999999988888888887766
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=207.63 Aligned_cols=298 Identities=12% Similarity=0.000 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc--cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY--WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~--~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+..+...++. .+++|+|||+|+..++.......|++.|++++++|.++...++..|++++.+|+
T Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~ 172 (420)
T 4f4e_A 93 GIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPY 172 (420)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEEC
T ss_pred CcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeee
Confidence 457889888888866444211122 589999999999988543322238999999999999999999999999999998
Q ss_pred --CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc-
Q 011842 214 --LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK- 287 (476)
Q Consensus 214 --~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~- 287 (476)
+.++.+|++.|++.|++.+.+..++++++++|+||.+ +++++|+++|++||+ ++++|++|+++.+....
T Consensus 173 ~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~li~De~y~~~~~~~~~~ 247 (420)
T 4f4e_A 173 YDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL-----VPFLDIAYQGFGESIEAD 247 (420)
T ss_dssp EETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTTSSSCTTGG
T ss_pred eccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc-----EEEEccccccccCCcchh
Confidence 3468899999999998544444688888999999998 457799999999999 99999999876653111
Q ss_pred cCCC--CCCcccccEEEEcCCCCCC-CCCCceeEEe--e-hhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 288 KAPK--VSFKKPIGSVSVSGHKFVG-CPMPCGVQIT--R-MEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 288 ~~~~--~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~--~-~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
..+. +......+++..|++|.++ .++++|++++ + .+.++.+... ..+... + ..+.+..........+..
T Consensus 248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~ 323 (420)
T 4f4e_A 248 AAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRT---N-YSNPPTHGGAIVAAVLAS 323 (420)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT---T-TSSCCSHHHHHHHHHHHC
T ss_pred hHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhc---c-cCCCCHHHHHHHHHHhcC
Confidence 1000 1111124577889999998 6889999874 2 2333221100 000000 0 011111212222222221
Q ss_pred hC-----hhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCcHHH---h--hceeecccCCEEEEE
Q 011842 361 KG-----YKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQDEEF---V--RRWQLACQGNIAHVV 426 (476)
Q Consensus 361 ~g-----~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~~~~---~--~~~~l~~~~~~lRv~ 426 (476)
.. .+.+++..++..++++++.+.|++. ++... .+..+++.|..-+.+.+ . +++.+... .|++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~---~Ris 399 (420)
T 4f4e_A 324 PELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFI-NAQRGMFSYSGLTSAQVDRLREEFGIYAVST---GRIC 399 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHH-HHSCSSEEECCCCHHHHHHHHHHHCEECCTT---SEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeE-CCCccEEEEeCCCHHHHHHHHHhCCEEecCC---CeEE
Confidence 11 2346777888889999999999987 33322 33333333432222222 2 22333332 2888
Q ss_pred EcCCCCHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~ 447 (476)
+. ..|.++|++++++|+++.
T Consensus 400 ~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 400 VA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp GG-GCCTTTHHHHHHHHHHHH
T ss_pred Ee-cCCHHHHHHHHHHHHHHh
Confidence 75 347777999999998764
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=197.34 Aligned_cols=280 Identities=11% Similarity=0.030 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc-hHHHHHHHHcCCe----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH-YSVFKAARMYRME---------- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H-~S~~~~~~~~G~~---------- 207 (476)
+...++++++++++|.+. ..+++|+|||+|+..++.+++...+++.|++.+++| .++..+++..|.+
T Consensus 87 ~~~~~l~~~la~~~~~~~--~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~ 164 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPEL--NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV 164 (395)
T ss_dssp HHHHHHHHHHHHTSCTTE--EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS
T ss_pred HHHHHHHHHHHHhcCCCc--CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCC
Confidence 566778888899888753 358999999999999998875322666666666655 4566667777765
Q ss_pred --EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 208 --CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 208 --v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
+..++. .|+++|+++|+++ +.+|+++..++++|.+.| +++|+++|++||+ ++|+|++|+++
T Consensus 165 ~~~~~~~~-----~d~~~l~~~i~~~---~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~-----~li~Dea~~~~ 231 (395)
T 1vef_A 165 EPVEFIPY-----NDVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGA-----LLILDEIQTGM 231 (395)
T ss_dssp SCEEEECT-----TCHHHHHHHCCTT---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTC-----EEEEECTTTTT
T ss_pred CCeeEeCC-----CcHHHHHHHhccC---EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCC-----EEEEEecccCC
Confidence 333443 4899999998743 347777766788999877 9999999999999 99999999853
Q ss_pred cccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 282 MMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
... .... .++... ..|++ +++|+++.|+++|++++++++++.+.... +. . ..+.+......+.++++.
T Consensus 232 ~~~-g~~~-~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~-~~----~--~~~~~~~~~~a~~~al~~ 300 (395)
T 1vef_A 232 GRT-GKRF-AFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG-HG----T--TFGGNPLAMAAGVAAIRY 300 (395)
T ss_dssp TTT-SSSS-THHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS-SC----C--SSTTCHHHHHHHHHHHHH
T ss_pred ccC-Cchh-HhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC-cC----C--CcCCCHHHHHHHHHHHHH
Confidence 211 1110 011111 26766 45899988999999999988766553311 10 1 111111222223344443
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeE--eecCCeeEEEEecCC-cHHHh------hceeec-ccCCEEEEEEcCC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISA--MLNELSSTVVFERPQ-DEEFV------RRWQLA-CQGNIAHVVVMPN 430 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~--~~~~~~~iv~f~~~~-~~~~~------~~~~l~-~~~~~lRv~~~~~ 430 (476)
+.. .+..++..++++++.+.|++.+... ..++..+++.+..+. ...+. +++.+. ...+.+|++++..
T Consensus 301 ~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~ 377 (395)
T 1vef_A 301 LER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLV 377 (395)
T ss_dssp HHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTT
T ss_pred HHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCC
Confidence 322 3467788889999999999876421 122334566666553 33332 233333 3357899999989
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENR 447 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~ 447 (476)
+|++++++++++|+++.
T Consensus 378 ~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 378 IEKEDLERVVEAVRAVL 394 (395)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-21 Score=194.21 Aligned_cols=285 Identities=13% Similarity=0.040 Sum_probs=190.9
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCccC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEID 220 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~D 220 (476)
.++++.+++++|.+ ..+++++||+|+..++.+++ ..+++.|+++.++|.++..+++..|++++.+|.++ ++.+|
T Consensus 66 ~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l~~~~-~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 140 (399)
T 2oga_A 66 EGFEAEFAAYCETD----HAVGVNSGMDALQLALRGLG-IGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLD 140 (399)
T ss_dssp HHHHHHHHHHTTSS----EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBC
T ss_pred HHHHHHHHHHHCCC----eEEEecCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcC
Confidence 44556677788875 27889999999999988872 13889999999999999999999999999999986 57899
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
+++|++++++++ .+|++ ++++|.+.|+++|.++|++||+ ++++|++|+.+....... + ....|+
T Consensus 141 ~~~l~~~i~~~~---~~v~~---~n~tG~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~~~---~--~~~~di 204 (399)
T 2oga_A 141 PLLVEKAITPRT---RALLP---VHLYGHPADMDALRELADRHGL-----HIVEDAAQAHGARYRGRR---I--GAGSSV 204 (399)
T ss_dssp HHHHHHHCCTTE---EEECC---BCGGGCCCCHHHHHHHHHHHTC-----EECEECTTCTTCEETTEE---T--TCTTCE
T ss_pred HHHHHHhcCCCC---eEEEE---eCCcCCccCHHHHHHHHHHcCC-----EEEEECcccccCccCCee---c--ccccCE
Confidence 999999997543 35554 5678999999999999999999 999999998553321111 1 112588
Q ss_pred EEEcCC--CCCCCCCCceeEEee-hhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 301 VSVSGH--KFVGCPMPCGVQITR-MEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 301 i~~s~h--K~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
+++|+| |+++.|.++|+++++ +++.+.+.....+-... .....+.......+.+++++..+ +.+++..++..+
T Consensus 205 ~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~ 282 (399)
T 2oga_A 205 AAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRL--AHLDSWNGRRSA 282 (399)
T ss_dssp EEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHH
T ss_pred EEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 899985 999863478888886 45544332111100000 00011111112345555544433 345667788888
Q ss_pred HHHHHHHHHHhc-CCeEeecC-CeeE----EEEecCCcHHHh-----hceeeccc-------------------------
Q 011842 376 NAHYLKDRLLDA-GISAMLNE-LSST----VVFERPQDEEFV-----RRWQLACQ------------------------- 419 (476)
Q Consensus 376 ~a~~l~~~L~~~-g~~~~~~~-~~~i----v~f~~~~~~~~~-----~~~~l~~~------------------------- 419 (476)
+++++.+.|++. ++.....+ ..+. +.+...+...+. +++.+...
T Consensus 283 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 362 (399)
T 2oga_A 283 LAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAE 362 (399)
T ss_dssp HHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHH
T ss_pred HHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHH
Confidence 999999999886 44332222 2221 222222323222 22222110
Q ss_pred ---CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 420 ---GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 420 ---~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+.+|+++++.+|++||++++++|+++.++
T Consensus 363 ~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 363 SFARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp HHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred HHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 157999999999999999999999988754
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=199.43 Aligned_cols=285 Identities=10% Similarity=-0.009 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE-cCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHHc--CCeEEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI-TNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARMY--RMECVKV 211 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~-t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~~--G~~v~~v 211 (476)
...++.+++++++++++|++. +..+++ |+|||+|+..++.++.. |+ +++++...|.. +...+... |++++.+
T Consensus 75 ~~~~~~~~~~~~la~~~g~~~-~~~i~~~t~g~t~al~~~~~~l~~--~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v 150 (398)
T 2fyf_A 75 PVKNLVGRVRSGLAELFSLPD-GYEVILGNGGATAFWDAAAFGLID--KR-SLHLTYGEFSAKFASAVSKNPFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHHHHHHTTCCT-TCEEEEEETCHHHHHHHHHHHTCS--SC-EEEEECSHHHHHHHHHHHHCTTSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CceEEEeCCchhHHHHHHHHHhcC--CC-eEEEeCCHHHHHHHHHHHHhCCCCceEEE
Confidence 345678889999999999973 235888 99999999999888754 65 33344545532 23345666 8889999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+ ++.++... +.++ +.+|++++++|++|.+.|+++|.++ +|+ |+|+|++|+.+..+
T Consensus 151 ~~~-~g~~~~~~----i~~~---~~~v~~~~~~nptG~~~~~~~i~~~---~~~-----~vivD~a~~~~~~~------- 207 (398)
T 2fyf_A 151 TSD-PGSAPEPQ----TDPS---VDVIAWAHNETSTGVAVAVRRPEGS---DDA-----LVVIDATSGAGGLP------- 207 (398)
T ss_dssp ECC-TTCCCCCC----CCTT---CSEEEEESEETTTTEECCCCCCTTC---C-C-----EEEEECTTTTTTSC-------
T ss_pred ecC-CCCCCCcc----ccCC---CCEEEEeCcCCCcceecchHHhhhh---cCC-----eEEEEeccccCCcc-------
Confidence 987 44332211 3333 3488888899999999999999887 899 99999999865543
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-------CccccCCC-------CCcccCCCCChhHHHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-------NVEYLASR-------DATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-------~~~yl~~~-------~~~~~~sr~~~~~l~~~~~ 357 (476)
++.. .+|+++.++||+++.|.++|++++++++++.+.. ...|+... .....++.+.....++.++
T Consensus 208 ~~~~-~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 286 (398)
T 2fyf_A 208 VDIA-ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQ 286 (398)
T ss_dssp CCGG-GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHH
T ss_pred cCcc-cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHH
Confidence 2222 2799999999999987679999999887655421 12232210 0011233332333455566
Q ss_pred HHHhChhc-HHHHHHHHHHHHHHHHHHHHhc-CCeEee-cC--Cee-EEEEecCC---cHHHhh-----ceeecc-----
Q 011842 358 LNRKGYKG-FQKEVQKCLRNAHYLKDRLLDA-GISAML-NE--LSS-TVVFERPQ---DEEFVR-----RWQLAC----- 418 (476)
Q Consensus 358 l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~-g~~~~~-~~--~~~-iv~f~~~~---~~~~~~-----~~~l~~----- 418 (476)
++.+...+ ++++.++..++++++.+.|++. |+.... .+ .++ ++.|..+. ..++.+ +..+..
T Consensus 287 l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~ 366 (398)
T 2fyf_A 287 IDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKL 366 (398)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccC
Confidence 66655555 8899999999999999999998 444332 13 245 77777652 233322 233321
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.++.+|++++..+|++|+++++++|+++.+
T Consensus 367 ~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 367 GRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 146899999999999999999999998764
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=199.56 Aligned_cols=293 Identities=9% Similarity=-0.074 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-----EEEec-CCCchHHHHHHHHc-----
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-----ILYAS-RESHYSVFKAARMY----- 204 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-----~Vl~s-~~~H~S~~~~~~~~----- 204 (476)
+..++++++.+++.+.+|++.+...+++|+|+|+|+..++.++.. +++ .|+++ .++|..+...+...
T Consensus 76 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG--RRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB--C----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC--CCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 567999999999988888775556799999999999999988865 655 88887 88888877655322
Q ss_pred -CCeEEEEeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 205 -RMECVKVDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 205 -G~~v~~v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
+..+..++.+. ++.+|+++|+ +.+ ++.+|++++++|++|.+.| +++|+++|++||+ ++++|++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~--~~~---~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~-----~li~De~~~ 223 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH--IGE---ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNI-----PLVIDNAYG 223 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC--CCT---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----CEEEECTTC
T ss_pred ccCcccccCCcccccccCHHHhc--ccc---CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCC-----EEEEeCCCc
Confidence 22344444331 3468999887 433 3458888899999999988 9999999999999 999999997
Q ss_pred cccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 280 GLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
.+.. ..............+++..+++|+++.++++|+++.++++++.+.....+. ..+.+ .+.+.++..
T Consensus 224 ~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~ 292 (417)
T 3g7q_A 224 VPFP-GIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGII-------SLAPG---GMGPAMMCE 292 (417)
T ss_dssp TTTT-CCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHH-------CCCCC---SHHHHHHHH
T ss_pred cccc-cccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhhcce-------eeCCC---cHHHHHHHH
Confidence 5321 111110001112357788899999888899999999888766553221111 11111 122333333
Q ss_pred HhChhcHH----H-HHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC----cHHHhh-----ceeec----
Q 011842 360 RKGYKGFQ----K-EVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ----DEEFVR-----RWQLA---- 417 (476)
Q Consensus 360 ~~g~~g~~----~-~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~----~~~~~~-----~~~l~---- 417 (476)
.+....+. + ..++..++++++.+.|++. ++....+.....+.+..+. ..++.+ +..+.
T Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~ 372 (417)
T 3g7q_A 293 MIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHY 372 (417)
T ss_dssp HHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGG
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchh
Confidence 22222222 2 4455667777788888763 3443334445566665543 223322 23221
Q ss_pred c--c--------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 418 C--Q--------GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 418 ~--~--------~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
+ . .+.+|+++.. |+++|+++++.|.++.+++.++
T Consensus 373 f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~~ 416 (417)
T 3g7q_A 373 FFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWRE 416 (417)
T ss_dssp GCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1 3589998874 9999999999999999887764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=202.23 Aligned_cols=295 Identities=9% Similarity=-0.024 Sum_probs=193.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREV-FPDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
+..++++++.+++.+..|.+.++.++++ |+|||+|+..++.+++.. .|++.|++++++|.++...++..|++++.+|
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~ 151 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYR 151 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeee
Confidence 4568899988888766664322234766 999999999888766521 3899999999999999999999999999999
Q ss_pred CC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 213 CL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 213 ~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++ .++.+|++.+++.+++.+.+..++++++++|+||.+ +++++|+++|++||+ ++++|++|..+......
T Consensus 152 ~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~li~Deay~~~~~~~~~ 226 (401)
T 7aat_A 152 YYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL-----LAYFDMAYQGFASGDIN 226 (401)
T ss_dssp CEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTTTTSCHH
T ss_pred eeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCc-----EEEEccccccccCCCcc
Confidence 85 368999999999987644445688888999999965 558899999999999 99999999766542110
Q ss_pred c-CCCCC---CcccccEEEEcCCCCCC-CCCCceeEEe---ehhh----hhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 288 K-APKVS---FKKPIGSVSVSGHKFVG-CPMPCGVQIT---RMEH----INVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 288 ~-~~~~~---~~~~~Dsi~~s~hK~l~-~p~~~G~l~~---~~~~----~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
. ...+. ....-.+++.|++|.++ .++++|++++ +.+. ...+....... ..+.+ .+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~~~ 296 (401)
T 7aat_A 227 RDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPM-------YSNPP---MNGAR 296 (401)
T ss_dssp HHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHH-------HSSCC---HHHHH
T ss_pred ccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhc-------cCCCC---hHHHH
Confidence 0 00000 01113567889999986 6788999987 2222 12221100000 01111 23333
Q ss_pred HHHHHhC--------hhcHHHHHHHHHHHHHHHHHHHHhcCC---eEeecCCeeEEEEecCCcHHH---hhceeecccCC
Q 011842 356 YTLNRKG--------YKGFQKEVQKCLRNAHYLKDRLLDAGI---SAMLNELSSTVVFERPQDEEF---VRRWQLACQGN 421 (476)
Q Consensus 356 ~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~iv~f~~~~~~~~---~~~~~l~~~~~ 421 (476)
++...+. .+.+++..++..+++++|.+.|++.+. ....++..+++.|..-..+.+ .++..+... .
T Consensus 297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-~ 375 (401)
T 7aat_A 297 IASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMT-K 375 (401)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECC-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEecc-C
Confidence 3322221 233566778888899999999998752 122233444444432222221 122222222 2
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
.+|++++..++++ |++++++|+++.
T Consensus 376 ~~Ris~~~~~~~~-i~~~~~~l~~~~ 400 (401)
T 7aat_A 376 DGRISVAGVASSN-VGYLAHAIHQVT 400 (401)
T ss_dssp TCEEEGGGCCTTT-HHHHHHHHHHHH
T ss_pred CCeEEeccCChhh-HHHHHHHHHHHh
Confidence 3699988655555 999999998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=189.49 Aligned_cols=289 Identities=13% Similarity=0.058 Sum_probs=187.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH---HHHHcC--CeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK---AARMYR--MECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~---~~~~~G--~~v~~ 210 (476)
...++++.+++++++++|.+++ +. ++++||+|+..++.++.. ||+.|+++.++|.++.. .....| +.++.
T Consensus 68 ~~~~~~~~~~~~la~~~g~~~~--~i-~~~sGt~a~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (417)
T 3n0l_A 68 FVDEIETLAIERCKKLFNCKFA--NV-QPNSGSQANQGVYAALIN--PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCF 142 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEE--EC-CCSSHHHHHHHHHHHHSC--TTCEEEEECC----------------CCSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCc--ce-EeccHHHHHHHHHHHhcC--CCCEEEecccccccccchhhhhhhhcceeeeEe
Confidence 3468888889999999998642 24 445559999999888855 89999999999987654 333444 45666
Q ss_pred EeCCCCCccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 211 VDCLISGEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++++.++.+|+++|++++. .+++ +|++++++ .|.+.|+++|.++|++||+ ++++|++|+.+........
T Consensus 143 ~~~~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~--~G~~~~l~~i~~l~~~~~~-----~li~Dea~~~g~~~~~~~~ 212 (417)
T 3n0l_A 143 YGVELDGRIDYEKVREIAKKEKPK---LIVCGASA--YARVIDFAKFREIADEIGA-----YLFADIAHIAGLVVAGEHP 212 (417)
T ss_dssp ECCCTTSSCCHHHHHHHHHHHCCS---EEEECCSS--CCSCCCHHHHHHHHHHHTC-----EEEEECTTTHHHHHTTSSC
T ss_pred ccCCCCCCcCHHHHHHHHHhcCCe---EEEECCcc--cCccCCHHHHHHHHHHcCC-----EEEEECccchhhhhcccCC
Confidence 7777778899999999998 4554 66676655 3999999999999999999 9999999864433211111
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
..+ ..+|+++.++||++.+ ++.|+++++ +++.+.+...... ...++.......++++++.....+++++
T Consensus 213 ~~~---~~~di~~~s~sK~l~g-~~~G~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~aa~~~a~~~~~~~~~~~ 282 (417)
T 3n0l_A 213 SPF---PYAHVVSSTTHKTLRG-PRGGIIMTNDEELAKKINSAIFP------GIQGGPLMHVIAAKAVGFKFNLSDEWKV 282 (417)
T ss_dssp CCT---TTCSEEEEESSTTTCS-CSCEEEEESCHHHHHHHHHHHTT------TTCSSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred Ccc---ccceEEEeeCccccCC-CCeeEEEECCHHHHHHHhhhhCC------cccCCcHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 1379999999999965 457999998 4555544221100 1122222222334445555544567788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC----cHHHh-----hceeec-----------ccCCEEEEEE
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ----DEEFV-----RRWQLA-----------CQGNIAHVVV 427 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~----~~~~~-----~~~~l~-----------~~~~~lRv~~ 427 (476)
+.++..++++++.+.|++.|+..... ...+++.+..+. ...+. +++.+. .....+|+++
T Consensus 283 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~ 362 (417)
T 3n0l_A 283 YAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGT 362 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecC
Confidence 99999999999999999977654432 234555555431 12221 133221 1125688875
Q ss_pred c----CCCCHHHHHHHHHHHHHHHHH
Q 011842 428 M----PNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 428 ~----~~~T~edid~~~~~l~~~~~~ 449 (476)
. ...|+++|+++++.|.++.+.
T Consensus 363 ~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 363 PALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 4 346899999999999888653
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=191.16 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=186.6
Q ss_pred HHHHH-HHHcCCCCCcccEEEcCCchhHHHHHHHHH-HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-CCCccC
Q 011842 144 VLDWF-ARLWELENNEYWGYITNCGTEGNLHGILVG-REVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-ISGEID 220 (476)
Q Consensus 144 ~~~~l-a~l~g~~~~~~~g~~t~ggt~An~~al~aa-~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~~g~~D 220 (476)
+++.+ ++++|.. . ..++|+|||+|+..++.++ .. ||+.|+++.++|.++..+++..|++++.++++ .++.+|
T Consensus 41 l~~~~~a~~~g~~-~--~~v~~~sgt~al~~al~~l~~~--~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d 115 (377)
T 3ju7_A 41 FEQTIMSGFFQNR-G--AVTTVANATLGLMAAIQLKKRK--KGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMD 115 (377)
T ss_dssp HHHHHHHHTSTTC-S--EEEEESCHHHHHHHHHHHHSCT--TCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred HHHHHHHHHhCCC-C--eEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence 34446 7778822 1 3899999999999998876 44 99999999999999999999999999999998 568999
Q ss_pred HHHHHHHH-HcC--CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC-cc
Q 011842 221 CADFKAKL-LQN--KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF-KK 296 (476)
Q Consensus 221 ~~~Le~~l-~~~--~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~-~~ 296 (476)
+++|++++ +++ ++ +|+ +++++|.+.|+++|.++|+ ||+ ++|+|++|+.+....... +.. ..
T Consensus 116 ~~~l~~~i~~~~~~tk---~v~---~~~~~G~~~~~~~i~~la~-~~~-----~vi~D~a~a~g~~~~~~~---~g~~~~ 180 (377)
T 3ju7_A 116 KTVLWDKIEELKEEVA---IVV---PYATFGSWMNLEEYEELEK-KGV-----PVVVDAAPGFGLMNGGMH---YGQDFS 180 (377)
T ss_dssp HHHHHHHHHHHGGGEE---EEC---CBCGGGBCCCCHHHHHHHH-TTC-----CBEEECTTCTTCEETTEE---TTTTCS
T ss_pred HHHHHHHHhcCCCCce---EEE---EECCCCCccCHHHHHHHHh-cCC-----EEEEECCCccCCeECCEe---ccCCCC
Confidence 99999998 554 43 554 4557899999999999999 999 999999997543321111 100 01
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCC--CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
.++++++++||++++ ...|+++++++ +.+.+.....+-.. ......+.+.....+..+..+.. .+.+.++.++.
T Consensus 181 d~~~~S~~~~K~l~~-g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--l~~l~~~~~~~ 257 (377)
T 3ju7_A 181 GMIIYSFHATKPFGI-GEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIAT--MKKWDDKLKER 257 (377)
T ss_dssp SEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHH--HHTHHHHHHHH
T ss_pred cEEEEECCCCCcCCC-CCcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHH--HHHHHHHHHHH
Confidence 256677778999997 46777777654 33332211111000 00111222222334544444443 36778889999
Q ss_pred HHHHHHHHHHHHhcCCe--EeecCC-----eeEEEEecCC---cHHHhhce-----e------ecc--------------
Q 011842 374 LRNAHYLKDRLLDAGIS--AMLNEL-----SSTVVFERPQ---DEEFVRRW-----Q------LAC-------------- 418 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~--~~~~~~-----~~iv~f~~~~---~~~~~~~~-----~------l~~-------------- 418 (476)
.++++++.+.|++.+.. .+.++. ..++.+..++ .+++.+.+ . .++
T Consensus 258 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~ 337 (377)
T 3ju7_A 258 TRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDL 337 (377)
T ss_dssp HHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCC
T ss_pred HHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCC
Confidence 99999999999987631 111111 1233455443 23332111 1 111
Q ss_pred ------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 ------QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
....+|+.+++.+|++|++++++.|+++...
T Consensus 338 p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 338 TRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0257899999999999999999999877643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-20 Score=188.87 Aligned_cols=270 Identities=15% Similarity=0.088 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~ 214 (476)
....++++.+++++|.+ + .+++++||+|+..++.++.. +++.|+++.++|.+.... ++..|++++.++.+
T Consensus 52 ~~~~~l~~~la~~~~~~-~---~i~~~sGt~a~~~~~~~~~~--~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (386)
T 1cs1_A 52 PTRDVVQRALAELEGGA-G---AVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 125 (386)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred ccHHHHHHHHHHHhCCC-c---EEEeCCHHHHHHHHHHHHhC--CCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC
Confidence 44456667778888876 2 45556669999999888754 889999999999985543 46679999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++++++++ +|+++++++++|.+.|+++|.++|++||+ ++++|++|+++.... . +
T Consensus 126 -----d~~~l~~~i~~~~~---~v~~~~~~nptG~~~~l~~i~~l~~~~~~-----~li~De~~~~~~~~~--~---~-- 185 (386)
T 1cs1_A 126 -----DEQALRAALAEKPK---LVLVESPSNPLLRVVDIAKICHLAREVGA-----VSVVDNTFLSPALQN--P---L-- 185 (386)
T ss_dssp -----CHHHHHHHHHTCCS---EEEEECSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTCC--G---G--
T ss_pred -----CHHHHHHhhccCCc---EEEEeCCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCCcccccCC--c---c--
Confidence 89999999987654 78888999999999999999999999999 999999998765431 0 1
Q ss_pred cccccEEEEcCCCCCCCCCCc--eeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPC--GVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~--G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
...+|+++.++||+++.|.+. |++++++ ++.+.+....... .++ ...+.++++++.+ +.+.++.+
T Consensus 186 ~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~---~~~~~~~~~~~~l--~~~~~~~~ 253 (386)
T 1cs1_A 186 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVT---GGAFDSYLLLRGL--RTLVPRME 253 (386)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCB---CCHHHHHHHHHHH--TTHHHHHH
T ss_pred ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCC---CCHHHHHHHHhcc--cHHHHHHH
Confidence 123799999999999877653 9999987 5655543211110 111 1234455544433 34667777
Q ss_pred HHHHHHHHHHHHHHhcCCeE-e-ec----------------CCeeEEEEecCCc-HHH---hh--ceeecc---------
Q 011842 372 KCLRNAHYLKDRLLDAGISA-M-LN----------------ELSSTVVFERPQD-EEF---VR--RWQLAC--------- 418 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~-~-~~----------------~~~~iv~f~~~~~-~~~---~~--~~~l~~--------- 418 (476)
+..++++++.+.|++.+... . .+ ...+++.|..++. +.+ .+ ++.+..
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~sl 333 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESL 333 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCccee
Confidence 88888999999998865321 1 11 1256777776532 222 11 111210
Q ss_pred ----------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 ----------------------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 ----------------------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+.+|+++...+++++|+.|.++|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 334 ISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp EEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1378999999999999999999988765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=198.23 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~ 214 (476)
...+++++.+++++|.+. .++++||++|+..++.+... ||+.|+++.+.|.+....+ +..|++++.++.+
T Consensus 82 p~~~~le~~lA~l~g~~~----~i~~ssGt~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 82 LTHFSLQQAMCELEGGAG----CVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHTTCC--TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455567777888888752 67789999999998887654 8999999999998876554 4569999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccccccccccCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
|+++|+++|++++ .+|++.+++|++|.+.|+++|+++|++ ||+ ++|+|++|+.++.. . + +
T Consensus 156 -----d~~~le~ai~~~t---klV~~e~~~NptG~v~dl~~I~~la~~~~~g~-----~livD~a~a~~~~~--~--p-~ 217 (415)
T 2fq6_A 156 -----IGADIVKHLQPNT---KIVFLESPGSITMEVHDVPAIVAAVRSVVPDA-----IIMIDNTWAAGVLF--K--A-L 217 (415)
T ss_dssp -----CGGGGGGGCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHCTTC-----EEEEECTTTTTTSS--C--G-G
T ss_pred -----CHHHHHHhhccCC---cEEEEECCCCCCCEeecHHHHHHHHHhhcCCC-----EEEEECCCcccccC--C--c-c
Confidence 8899999987655 488889999999999999999999999 999 99999999854321 0 0 1
Q ss_pred CCcccccEEEEcCCCCCCCCCC--ceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMP--CGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
...+|+++.|+||+++.+.+ .|+++.++++++.+...... .++.. .+...|..++. .+.+..++
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~--------~G~~~--~~~~a~~~~~~--l~~l~~r~ 283 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL--------MGQMV--DADTAYITSRG--LRTLGVRL 283 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH--------TTCCC--CHHHHHHHHHH--HHHHHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHh--------cCCCC--CHHHHHHHHhh--hhHHHHHH
Confidence 12489999999999996543 68999887765544221111 12211 13444544443 34567778
Q ss_pred HHHHHHHHHHHHHHHhcCCeE-e-ec----------------CCeeEEEEecCC---c---HHHhhceee----------
Q 011842 371 QKCLRNAHYLKDRLLDAGISA-M-LN----------------ELSSTVVFERPQ---D---EEFVRRWQL---------- 416 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~-~-~~----------------~~~~iv~f~~~~---~---~~~~~~~~l---------- 416 (476)
++..++++.+.+.|++.+... + .+ ...+++.|..++ . ..+.+.+.+
T Consensus 284 ~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~ 363 (415)
T 2fq6_A 284 RQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGY 363 (415)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCC
Confidence 888889999999998875322 2 12 135678888764 1 123332210
Q ss_pred --------c-------------ccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 417 --------A-------------CQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 417 --------~-------------~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+ ...+.+|+++...+++++|+.|.++|++
T Consensus 364 ~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 364 ESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred ceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 0136899999999999999999998864
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=189.90 Aligned_cols=266 Identities=14% Similarity=0.113 Sum_probs=184.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~~g~ 218 (476)
++++.+++++|.+ + .+++++||+|+..++.++.. |++.|+++.++|.++...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~---~i~~~sG~~a~~~~~~~~~~--~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A---CAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC-e---EEEeCChHHHHHHHHHHhcC--CCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 3556678888886 2 56666779999999887754 8899999999999987665 457999999986
Q ss_pred cCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-hCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 219 IDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 219 ~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~-~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
+|+++|++++++++ .+|++++++|++|.+.|+++|.++|++ ||+ ++++|++|+.+.... . + ...
T Consensus 71 ~d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~-----~li~D~a~~~~~~~~--~---~--~~~ 135 (331)
T 1pff_A 71 AVPGNIEKHLKPNT---RIVYFETPANPTLKVIDIEDAVKQARKQKDI-----LVIVDNTFASPILTN--P---L--DLG 135 (331)
T ss_dssp TSTTHHHHTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHTTSSSC-----EEEEECTTTHHHHCC--G---G--GGT
T ss_pred CCHHHHHHhhcCCC---eEEEEECCCCCcCcccCHHHHHHHHhhhcCC-----EEEEECCCcccccCC--h---h--hcC
Confidence 38889999886543 488889999999999999999999999 999 999999998654421 0 1 123
Q ss_pred ccEEEEcCCCCCCCCCC--ceeEEeeh-hhhhhhcCCccc-cCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 298 IGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEY-LASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p~~--~G~l~~~~-~~~~~l~~~~~y-l~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
+|+++.|+||+++.|.+ +|++++++ ++.+.+.....+ . .++. ..+.+|+++..+ +.+..+.++.
T Consensus 136 ~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~-------~~~~---~~~~~~~~~~~l--~~~~~~~~~~ 203 (331)
T 1pff_A 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDIT-------GAII---SPHDAWLITRGT--LTLDMRVKRA 203 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCC-------CCCC---CHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhc-------CCCC---CHHHHHHHHcCc--chHHHHHHHH
Confidence 89999999999987765 89999998 776655432221 1 1111 234444443332 2344455556
Q ss_pred HHHHHHHHHHHHhcCC-eE-e------------e----cCCeeEEEEecCCcHHH---hhceee---cc-----------
Q 011842 374 LRNAHYLKDRLLDAGI-SA-M------------L----NELSSTVVFERPQDEEF---VRRWQL---AC----------- 418 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~-~~-~------------~----~~~~~iv~f~~~~~~~~---~~~~~l---~~----------- 418 (476)
.++++.+.+.|++.+. .. + . +...+++.|..++.+.+ .++..+ ..
T Consensus 204 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~ 283 (331)
T 1pff_A 204 AENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQH 283 (331)
T ss_dssp HHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEEC
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcceeeec
Confidence 6667777777765421 11 0 0 01246777876543222 222111 10
Q ss_pred -------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 419 -------------------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 419 -------------------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+.+|+++...+|+++|++++++|+++
T Consensus 284 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 284 PASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred chhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 1378999999999999999999998753
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=197.13 Aligned_cols=284 Identities=9% Similarity=0.026 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCC---------
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM--------- 206 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~--------- 206 (476)
+..++++++.+|+.+.++.+ +.++++|+|+++++.. +..... |++.|++++++|.++...++.+|.
T Consensus 99 g~~~l~~~ia~~~~~~~~~~--~~~i~~t~G~~~al~~-l~~l~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 173 (432)
T 3ei9_A 99 GAKPLRAAIAKTFYGGLGIG--DDDVFVSDGAKCDISR-LQVMFG--SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQ 173 (432)
T ss_dssp CCHHHHHHHHHHHHTTTTCC--GGGEEEESCHHHHHHH-HHHHHC--TTCCEEEEESCCTHHHHHHHHHTCSCCEETTTT
T ss_pred CCHHHHHHHHHHHHccCCCC--cceEEECCChHHHHHH-HHHHcC--CCCEEEEeCCCCHHHHHHHHHcCCccccccccc
Confidence 45789999999988655554 3569999999999876 444444 899999999999999999998884
Q ss_pred ---eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 207 ---ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 207 ---~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
+++.++++.++.++.+ |++ .++ +.+|+++++.|++|.+. ++++|+++|++||+ ++++|++|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-l~~--~~~---~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~-----~li~Dea~~~ 242 (432)
T 3ei9_A 174 KYGNIEYMRCTPENGFFPD-LST--VGR---TDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGS-----IIVYDSAYAM 242 (432)
T ss_dssp EETTCEEEECCGGGTTSCC-GGG--CCC---CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGG
T ss_pred ccCceEEeccCcccCCcCC-hhh--CCC---CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCc-----EEEEccchHh
Confidence 6888888754332222 222 122 33777789999999885 47788888999999 9999999987
Q ss_pred ccccccccCCCCCC--cccccEEEEcCCCCCC-CCCCceeEEeehhh--------hhhhcCCccccCCCCCcccCCCCCh
Q 011842 281 LMMPFVKKAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITRMEH--------INVLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 281 ~~~~~~~~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~--------~~~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
+.... ...+.... ....+++..+++|+++ .++++|+++++++. .+.+.....+. ..+ .
T Consensus 243 ~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~ 311 (432)
T 3ei9_A 243 YMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC-------FNG---A 311 (432)
T ss_dssp GCCSS-CCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHS-------CCC---S
T ss_pred hccCC-CCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccc-------cCC---C
Confidence 65432 11111111 1235688899999986 78999999998876 33332111110 011 2
Q ss_pred hHHHHHHHHHHhC---hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHH----hh--ceeec-
Q 011842 350 APIFLWYTLNRKG---YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEF----VR--RWQLA- 417 (476)
Q Consensus 350 ~~l~~~~~l~~~g---~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~----~~--~~~l~- 417 (476)
..+.+.+++..+. .+.+++..++..++++++.+.|++.|+....++.++++.+..+. ..++ .+ ++.+.
T Consensus 312 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~ 391 (432)
T 3ei9_A 312 SNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTP 391 (432)
T ss_dssp CHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEE
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeC
Confidence 2455555555543 23467788888999999999999998765555566777777653 2222 22 33332
Q ss_pred ------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 418 ------CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 418 ------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
...+.+|+++ .+++++|+..++.|++-.+
T Consensus 392 g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~~~ 426 (432)
T 3ei9_A 392 GSGFGPGGEGFVRVSA--FGHRENILEACRRFKQLYK 426 (432)
T ss_dssp GGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred chHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHhh
Confidence 1257899986 5699999999999976543
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=199.80 Aligned_cols=294 Identities=12% Similarity=-0.001 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc--cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY--WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~--~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+..+...++. .+++|+|||+|+..++.......|++.|+++.++|.++...++..|++++.+|+
T Consensus 71 g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 150 (397)
T 3fsl_A 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPW 150 (397)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECC
T ss_pred chHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEee
Confidence 456888888888865444211123 589999999999988654332348999999999999999999999999999998
Q ss_pred --CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCccccccccc-c
Q 011842 214 --LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-K 287 (476)
Q Consensus 214 --~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~ 287 (476)
++++.+|+++|++++.+.+.+..+++++++.|+||.+ +++++|+++|++||+ ++++|++|+.+..... .
T Consensus 151 ~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~ 225 (397)
T 3fsl_A 151 YDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-----IPFLDIAYQGFGAGMEED 225 (397)
T ss_dssp EETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTSSSCTTGG
T ss_pred eeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCE-----EEEEecCchhhccCcccc
Confidence 4578899999999998643344578888999999999 557799999999999 9999999987654311 1
Q ss_pred cCCCCCC--cccccEEEEcCCCCCC-CCCCceeEEee---hhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 288 KAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQITR---MEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 288 ~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l~~~---~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
..+...+ .....++..|++|.++ .++++|++++. .+.++.+... ..+... + ..+.+ .+.+.++...
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~---~~~~~~~~~~ 298 (397)
T 3fsl_A 226 AYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRR---N-YSSPP---NFGAQVVAAV 298 (397)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHT---T-TSSCC---SHHHHHHHHH
T ss_pred cHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHh---c-cCCCC---HHHHHHHHHH
Confidence 1000111 1123467788999987 67889999752 2333322110 011000 0 11111 1222222222
Q ss_pred hC--------hhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCcHHH---hh--ceeecccCCEE
Q 011842 361 KG--------YKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQDEEF---VR--RWQLACQGNIA 423 (476)
Q Consensus 361 ~g--------~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~~~~---~~--~~~l~~~~~~l 423 (476)
+. .+.+++..++..++++++.+.|++. ++....+.....+++..+ .+.+ .+ +..+...+
T Consensus 299 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~--- 374 (397)
T 3fsl_A 299 LNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-AAQVDRLREEFGVYLIASG--- 374 (397)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC-HHHHHHHHHTTCEECCTTC---
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC-HHHHHHHHHhCCEEECCCC---
Confidence 22 3446777888899999999999987 343333333333333332 2222 22 22333222
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~ 446 (476)
|+++.. .|.++|++++++|+++
T Consensus 375 Ris~~~-~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 375 RMCVAG-LNTANVQRVAKAFAAV 396 (397)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHH
T ss_pred eEEEEe-cCHhhHHHHHHHHHhh
Confidence 888753 3667799999999865
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=189.44 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=181.2
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh----CCC-cEEEecCCCchHHHH-HHHHcCCe--------
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV----FPD-GILYASRESHYSVFK-AARMYRME-------- 207 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~----~p~-~~Vl~s~~~H~S~~~-~~~~~G~~-------- 207 (476)
.++++++++++|++ ..+++|+|||+|+..++.+++.. .|+ +.|++++++|..+.. +....+..
T Consensus 73 ~~l~~~la~~~g~~---~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T 2eh6_A 73 EELAHKLVKHFWTE---GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP 149 (375)
T ss_dssp HHHHHHHHHTSSSC---EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred HHHHHHHHhhcCCC---CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence 45667788888883 24999999999999998765321 367 889998888655433 33332221
Q ss_pred ----EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 208 ----CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 208 ----v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
+..++. .|+++|+++++++ +.+|+++.+.+++|.+.| +++|.++|++||+ ++|+|++|+
T Consensus 150 ~~~~~~~~~~-----~d~~~l~~~l~~~---~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~-----~li~De~~~ 216 (375)
T 2eh6_A 150 LVPGFSYAKL-----NDIDSVYKLLDEE---TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDV-----LLIIDEVQT 216 (375)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCCTT---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTC-----EEEEECTTT
T ss_pred CCCCceeCCC-----chHHHHHHHhcCC---eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCC-----EEEEecccc
Confidence 344443 4899999888643 447888888999999988 9999999999999 999999998
Q ss_pred cccccccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 280 GLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
++... .... .+... ...|++++| |++++|+++|++++++++++.+... .+. .++ + ...+.+++++
T Consensus 217 ~~~~~-~~~~-~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~-~~~----~~~-~----~~~~~~~~~~ 282 (375)
T 2eh6_A 217 GIGRT-GEFY-AYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPG-SHG----STF-G----GNPLACRAGT 282 (375)
T ss_dssp TTTTT-SSSS-GGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTT-SCC----CSS-T----TCHHHHHHHH
T ss_pred CCCCC-Ccch-hhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCC-CCC----CCC-C----CCHHHHHHHH
Confidence 53221 1110 01111 126888666 8888899999999998876655331 110 111 1 1234444433
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-cHHHh-----hceeec-ccCCEEEEEEcCCC
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-DEEFV-----RRWQLA-CQGNIAHVVVMPNV 431 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~l~-~~~~~lRv~~~~~~ 431 (476)
..+.. +.+..++..++++++.+.|++.+.... ++..+++.+..+. ..++. +++.+. ...+.+|++++..+
T Consensus 283 ~~l~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~ 359 (375)
T 2eh6_A 283 VVVDE--VEKLLPHVREVGNYFKEKLKELGKGKV-KGRGLMLGLELERECKDYVLKALEKGLLINCTAGKVLRFLPPLII 359 (375)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHTTSSEE-EEETTEEEEECSSCCHHHHHHHHHTTEECEEETTTEEEECCCTTC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEEEEEEEcCcHHHHHHHHHHCCCEEecCCCCEEEEECCCCC
Confidence 33311 126778888899999999998775332 3344566666653 23332 233332 34678999998899
Q ss_pred CHHHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELIEN 446 (476)
Q Consensus 432 T~edid~~~~~l~~~ 446 (476)
|++++++++++|+++
T Consensus 360 ~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 360 QKEHIDRAISVLREI 374 (375)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999865
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=192.28 Aligned_cols=292 Identities=10% Similarity=-0.045 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH--HHHHHHHhhCC---------CcEEEecCCCchHHHHHHHHc
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL--HGILVGREVFP---------DGILYASRESHYSVFKAARMY 204 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~--~al~aa~~~~p---------~~~Vl~s~~~H~S~~~~~~~~ 204 (476)
+..+++++ ++++++++++ .+++|+|+++++. .++.+.....| ++.|+++.++|.++...++..
T Consensus 71 g~~~lr~~----ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 144 (423)
T 3ez1_A 71 GLPSARAL----FAGYLDVKAE--NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL 144 (423)
T ss_dssp CCHHHHHH----HHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred ChHHHHHH----HHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence 34556555 5556677653 5999999999997 67766654224 589999999999999999999
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEe-eCCCccccccCHH---HHHHHH-HHhCCCCCceEEEEecCcc
Q 011842 205 RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVN-IGTTVKGAVDDLD---LVIQTL-EESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 205 G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t-~gtt~tG~id~l~---~I~~ia-~~~g~~~~~~~lhvD~a~~ 279 (476)
|++++.+|++++| +|+++|++++.+.. ++.+|+++ ++.|+||.+.+.+ +|+++| ++||+ ++++|++|+
T Consensus 145 g~~~~~v~~~~~g-~d~~~l~~~l~~~~-~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~-----~li~De~y~ 217 (423)
T 3ez1_A 145 GFELLTVDMQSDG-PDVDAVERLAGTDP-SVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF-----TIFADDAYR 217 (423)
T ss_dssp TCEEEEEEEETTE-ECHHHHHHHHHSCT-TEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC-----EEEEECTTS
T ss_pred CCEEEeccCCCCC-CCHHHHHHHHhhCC-CceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC-----EEEEECCcc
Confidence 9999999998665 99999999996322 23456544 7899999998766 888888 89999 999999998
Q ss_pred cccccc-c--ccCCCCCC-----cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 280 GLMMPF-V--KKAPKVSF-----KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 280 g~~~~~-~--~~~~~~~~-----~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
...+.. . ...+.+.. ....+++..|++|+++.++++|+++.++++++.+.....+.. .+. ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~-------~~~---~~ 287 (423)
T 3ez1_A 218 VHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQS-------IGP---NK 287 (423)
T ss_dssp SCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSC-------SCC---CH
T ss_pred hhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhc-------cCC---CH
Confidence 533221 1 11111111 112567888999988889999999999887665532222110 111 12
Q ss_pred HHHHHHHHHhCh------hcHHHHHHHHHHHHHHHHHHHH----hcC-CeEee-cCCeeEEEEecCC--cHHHh-----h
Q 011842 352 IFLWYTLNRKGY------KGFQKEVQKCLRNAHYLKDRLL----DAG-ISAML-NELSSTVVFERPQ--DEEFV-----R 412 (476)
Q Consensus 352 l~~~~~l~~~g~------~g~~~~~~~~~~~a~~l~~~L~----~~g-~~~~~-~~~~~iv~f~~~~--~~~~~-----~ 412 (476)
+.++++...+.. +.+++..+...++.+.+.+.|. +.| ...+. +...+++.+..+. ...+. +
T Consensus 288 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~ 367 (423)
T 3ez1_A 288 VEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAA 367 (423)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHC
Confidence 334433333322 2233344444445555555554 355 33333 3445666666553 22222 2
Q ss_pred ceeecc-----------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 413 RWQLAC-----------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 413 ~~~l~~-----------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+..+.. ..+.+|+++... |+++|+.+++.|.++.++..
T Consensus 368 gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 368 GVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp TEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 333321 247899988544 99999999999999887654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-20 Score=188.46 Aligned_cols=287 Identities=13% Similarity=0.078 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHH--HcCC--eEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAAR--MYRM--ECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~--~~G~--~v~~v~~ 213 (476)
.+++..++++++++|.+. ..++++|||+|+..++.++.. |++.|++++++|.+ +...+. ..|. .++.++.
T Consensus 78 ~~~~~a~~~~~~~~~~~~---~~v~~~~Gs~a~~~al~~~~~--~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (425)
T 3ecd_A 78 EVEALAIERVKRLFNAGH---ANVQPHSGAQANGAVMLALAK--PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV 152 (425)
T ss_dssp HHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHCC--TTCEEEEECC------------------CEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCC---ceeecCchHHHHHHHHHHccC--CCCEEEEcccccccceecchhhhhcccceeeeecCC
Confidence 445555688999999874 135689999999999888754 89999999999988 323322 4455 4556666
Q ss_pred C-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 214 L-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+ .++.+|+++|++++.+ +++ +|+++++.+ |...++++|.++|++||+ ++|+|++|+.+.......
T Consensus 153 ~~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~~--~~~~~l~~i~~l~~~~~~-----~li~De~~~~g~~~~~~~--- 219 (425)
T 3ecd_A 153 SRDTMLIDYDQVEALAQQHKPS---LIIAGFSAY--PRKLDFARFRAIADSVGA-----KLMVDMAHIAGVIAAGRH--- 219 (425)
T ss_dssp CTTTSSCCHHHHHHHHHHHCCS---EEEEECSCC--CSCCCHHHHHHHHHHHTC-----EEEEECGGGHHHHHTTSS---
T ss_pred CcccCccCHHHHHHHHhhcCCc---EEEEccccC--CCcCCHHHHHHHHHHcCC-----EEEEECcChHhhhhcccc---
Confidence 5 3478999999999974 454 666665544 788999999999999999 999999976443322221
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
......+|+++.++||++++| ++|+++.+++ +.+.+... .+ ....++.......++++++.....+++++..
T Consensus 220 ~~~~~~~di~~~s~sK~l~g~-~~g~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ 292 (425)
T 3ecd_A 220 ANPVEHAHVVTSTTHKTLRGP-RGGFVLTNDEEIAKKINSA-VF-----PGLQGGPLMHVIAGKAVAFGEALTDDFKTYI 292 (425)
T ss_dssp CCGGGTCSEEEEESSGGGCCC-SCEEEEESCHHHHHHHHHH-HC----------CCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cCchhcCcEEEecCCcccCCC-CcEEEEeCCHHHHHHHHhh-hC-----ccccCCccHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111123799999999999654 6799998854 44333210 01 0111222222233444555554456778899
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC---c-HHHh-----hceeec----c-------cCCEEEEE---
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ---D-EEFV-----RRWQLA----C-------QGNIAHVV--- 426 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~---~-~~~~-----~~~~l~----~-------~~~~lRv~--- 426 (476)
++..++++++.+.|++.|+....+ ...+++.+..+. + ..+. +++.+. . ..+.+|++
T Consensus 293 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~ 372 (425)
T 3ecd_A 293 DRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPA 372 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHH
T ss_pred HHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchh
Confidence 999999999999999988765443 245566665432 1 2221 233332 1 12478998
Q ss_pred -EcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 427 -VMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 427 -~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
....+++++|+++++.|+++.+..
T Consensus 373 ~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 373 GTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred heeccCCHHHHHHHHHHHHHHHhcc
Confidence 455567999999999999988765
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=200.28 Aligned_cols=294 Identities=10% Similarity=-0.004 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+..|.+.++.++++ |+||++|+..++.......||+.|+++.++|.++...++..|++++.+|.
T Consensus 74 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~ 153 (412)
T 1yaa_A 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPY 153 (412)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEEC
T ss_pred CcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEee
Confidence 4568888888888655553211235888 99999999988544332238999999999999999999999999999998
Q ss_pred -CC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc--
Q 011842 214 -LI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-- 286 (476)
Q Consensus 214 -~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-- 286 (476)
++ ++.+|+++|++++.+.+....++++++++|+||.+.+ +++|+++|++||+ ++++|++|+++.+...
T Consensus 154 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~ 228 (412)
T 1yaa_A 154 WANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH-----IALFDTAYQGFATGDLDK 228 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTTSSSCHHH
T ss_pred ecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEecccccccCCcccc
Confidence 53 6789999999999865322345666899999999854 7789999999999 9999999976543210
Q ss_pred ccCCCCCCcc-cc----cEEEEcCCCCCCC-CCCceeEE--e-----ehh----hhhhhcCCccccCCCCCcccCCCCCh
Q 011842 287 KKAPKVSFKK-PI----GSVSVSGHKFVGC-PMPCGVQI--T-----RME----HINVLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 287 ~~~~~~~~~~-~~----Dsi~~s~hK~l~~-p~~~G~l~--~-----~~~----~~~~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
...+..++.. .. ++++.+++|.++. ++++|+++ . +.+ +++.+.....+. ..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~~--- 298 (412)
T 1yaa_A 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSE-------VSNP--- 298 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTT-------TSSC---
T ss_pred hhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhc-------cCCC---
Confidence 1100001111 12 4667889999885 67799998 6 444 444332211110 0111
Q ss_pred hHHHHHHHHHHhC--------hhcHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeEEEEecCCcHHH---h--h
Q 011842 350 APIFLWYTLNRKG--------YKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEF---V--R 412 (476)
Q Consensus 350 ~~l~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~iv~f~~~~~~~~---~--~ 412 (476)
..+.++++...+. .+.+++..++..++++++.+.|++.+ +.. .++..+++.|...+...+ . +
T Consensus 299 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (412)
T 1yaa_A 299 PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDH-IVNQCGMFSFTGLTPQMVKRLEETH 377 (412)
T ss_dssp CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTH-HHHCCSSEEECCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeee-eccCceEEEeeCCCHHHHHHHHHhC
Confidence 1233333333332 13567778888889999999999876 433 334444444432222222 1 1
Q ss_pred ceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 413 RWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 ~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++.+.. .+|+++.. +|++++++++++|+++.+.
T Consensus 378 gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 378 AVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp CEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred CEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence 222222 57998873 5999999999999988753
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=187.52 Aligned_cols=282 Identities=15% Similarity=0.074 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-----hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-----EVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-----~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
..++++.+++++|.+ ..+++++||+|+..++.+++ ...+++.|+++.++|.++..+++..|++++.+++++
T Consensus 36 ~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~ 111 (390)
T 3b8x_A 36 VKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI 111 (390)
T ss_dssp HHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc
Confidence 344555677777875 28899999999999998873 123789999999999999999999999999999986
Q ss_pred C-CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 216 S-GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 216 ~-g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+ +.+|+++|+++|++++ .+|++++ ++|...|+++|.++|++||+ ++|+|++|+.+..+.... +..
T Consensus 112 ~~~~~d~~~l~~~i~~~~---~~v~~~~---~~g~~~~~~~i~~l~~~~~~-----~li~D~a~~~g~~~~~~~---~g~ 177 (390)
T 3b8x_A 112 NTLNIDIESLKEAVTDST---KAILTVN---LLGNPNNFDEINKIIGGRDI-----ILLEDNCESMGATFNNKC---AGT 177 (390)
T ss_dssp TTCSBCHHHHHHHCCTTE---EEEEEEC---GGGCCCCHHHHHHHHTTSCC-----EEEEECTTCTTCEETTEE---TTS
T ss_pred cccCcCHHHHHHHhCcCC---eEEEEEC---CccChhhHHHHHHHHHHcCC-----EEEEECcCcccCEECCcc---ccc
Confidence 5 8999999999997644 3666653 56889999999999999999 999999998544332211 111
Q ss_pred cccccEEEEcCCCCCCCCCCceeEEeeh-hhhhhh---cCCc---c---------------ccCCCCCcccCCCCChhHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMPCGVQITRM-EHINVL---SSNV---E---------------YLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~~G~l~~~~-~~~~~l---~~~~---~---------------yl~~~~~~~~~sr~~~~~l 352 (476)
...+.+++..+.|.+.+|.+ |++++++ ++.+.+ .... + |.........|.+.....+
T Consensus 178 ~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 256 (390)
T 3b8x_A 178 FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEM 256 (390)
T ss_dssp SSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHH
T ss_pred ccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHH
Confidence 11123444333444554555 8888886 443322 1100 0 0000000011222223455
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--CeeE--EEEecC-----CcHHHhh-----ceeec-
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--LSST--VVFERP-----QDEEFVR-----RWQLA- 417 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~i--v~f~~~-----~~~~~~~-----~~~l~- 417 (476)
..+.++..+ +.+++..++..++++++.+.|++.+...+..+ .++. +.+..+ ..+.+.+ ++.+.
T Consensus 257 ~aa~~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~ 334 (390)
T 3b8x_A 257 SGAIGIEQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP 334 (390)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence 555555543 56778889999999999999998743333322 2322 333333 2222221 11110
Q ss_pred ------c-c----------------------CCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 418 ------C-Q----------------------GNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 418 ------~-~----------------------~~~lRv~~~~~~T~edid~~~~~l 443 (476)
| . .+.+|+++++.+|++|||+++++|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 335 IVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp STTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred ecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 0 0 136899999999999999999876
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=195.81 Aligned_cols=295 Identities=12% Similarity=0.037 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC---cccEEE--cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHH----HcCC
Q 011842 136 HSRQFEVGVLDWFARLWELENN---EYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR----MYRM 206 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~---~~~g~~--t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~----~~G~ 206 (476)
+..++++++.+++ +|.+.. +.++++ |+|||+|+..++.......|++.|++++++|.++...++ ..|+
T Consensus 95 G~~~lr~~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~ 171 (448)
T 3meb_A 95 GFPLFLEAAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKV 171 (448)
T ss_dssp CCHHHHHHHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTS
T ss_pred chHHHHHHHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCC
Confidence 4567877777776 366521 235888 999999998754332223489999999999999999999 8999
Q ss_pred eEEEEeC-CCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 207 ECVKVDC-LIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 207 ~v~~v~~-~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
+++.+|+ +++ +.+|+++|++++.+......+++++++.|+||.+.+ +++|+++|++||+ ++++|++|.+
T Consensus 172 ~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~-----~li~Deay~~ 246 (448)
T 3meb_A 172 PYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKH-----IAFFDSAYQG 246 (448)
T ss_dssp CCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTT
T ss_pred eEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCC-----EEEEeccccc
Confidence 9999998 654 789999999999864333457788889999999865 6669999999999 9999999987
Q ss_pred ccccccc-cCCCCC-C-ccc-ccEEEEcCCCCCC-CCCCceeE--Ee--------eh-----hhhhhhcCCccccCCCCC
Q 011842 281 LMMPFVK-KAPKVS-F-KKP-IGSVSVSGHKFVG-CPMPCGVQ--IT--------RM-----EHINVLSSNVEYLASRDA 340 (476)
Q Consensus 281 ~~~~~~~-~~~~~~-~-~~~-~Dsi~~s~hK~l~-~p~~~G~l--~~--------~~-----~~~~~l~~~~~yl~~~~~ 340 (476)
+...... ....+. + ... -.+++.|++|.++ .++++|++ ++ ++ ++++.+.....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----- 321 (448)
T 3meb_A 247 FATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKT----- 321 (448)
T ss_dssp TSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred ccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcc-----
Confidence 6543110 000000 0 011 2356888999887 57889998 66 44 3333332111111
Q ss_pred cccCCCCChhHHHHHHHHHHhCh--------hcHHHHHHHHHHHHHHHHHHHHhcCCe--------EeecCCeeEEEEec
Q 011842 341 TIMGSRNGHAPIFLWYTLNRKGY--------KGFQKEVQKCLRNAHYLKDRLLDAGIS--------AMLNELSSTVVFER 404 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~~l~~~g~--------~g~~~~~~~~~~~a~~l~~~L~~~g~~--------~~~~~~~~iv~f~~ 404 (476)
..+ ...+.++++...+.. +.+++..++..+++++|.+.|++.+.. ....+...++.|..
T Consensus 322 --~~~---~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 396 (448)
T 3meb_A 322 --WSM---SAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTG 396 (448)
T ss_dssp --TSS---CCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECC
T ss_pred --cCC---ccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecC
Confidence 001 123444444444432 336677788889999999999987422 12223333344432
Q ss_pred CCcH---HHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 405 PQDE---EFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 405 ~~~~---~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
-..+ .+.++..+....+..|+++.. .|.++|++++++|.++.++
T Consensus 397 ~~~~~~~~ll~~~gV~v~~G~gRis~a~-~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 397 LTPEHVDYLKEKWSIYLVKAGGRMSMCG-LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCHHHHHHHHHHHCEEECSGGGEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCEEEeCCCcEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 2221 122222222221113888753 4666799999999998763
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=197.26 Aligned_cols=299 Identities=11% Similarity=-0.007 Sum_probs=193.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhhCCC-----cEEEecCCCchHHHHHHHHcCCe-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREVFPD-----GILYASRESHYSVFKAARMYRME- 207 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~~p~-----~~Vl~s~~~H~S~~~~~~~~G~~- 207 (476)
+..++++++.+++....|.+.+...+++ |+||++|+..++..+....|+ +.|+++.++|.++...++..|++
T Consensus 75 g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 154 (412)
T 1ajs_A 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKD 154 (412)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCce
Confidence 4568888887777544443211234889 999999999987544333388 89999999999999999999999
Q ss_pred EEEEeCC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 208 CVKVDCL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 208 v~~v~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
++.+|.+ .++.+|+++|++++.+...+..+++++++.|+||.+. ++++|+++|++||+ ++++|++|.++.
T Consensus 155 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~y~~~~ 229 (412)
T 1ajs_A 155 IRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL-----FPFFDSAYQGFA 229 (412)
T ss_dssp EEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTTTT
T ss_pred eEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEEccccccc
Confidence 9999984 4678999999999986433345777789999999984 57789999999999 999999987654
Q ss_pred ccc--cccCCCCCCcc-c-ccEEEEcCCCCCCC-CCCceeEEe---ehhhhh----hhcCCccccCCCCCcccCCCCChh
Q 011842 283 MPF--VKKAPKVSFKK-P-IGSVSVSGHKFVGC-PMPCGVQIT---RMEHIN----VLSSNVEYLASRDATIMGSRNGHA 350 (476)
Q Consensus 283 ~~~--~~~~~~~~~~~-~-~Dsi~~s~hK~l~~-p~~~G~l~~---~~~~~~----~l~~~~~yl~~~~~~~~~sr~~~~ 350 (476)
... ....+...+.. . -+++..+++|.++. ++++|++++ +++.++ .+.....+ +..+ .+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~ 302 (412)
T 1ajs_A 230 SGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRV------TWSN-PPAQG 302 (412)
T ss_dssp TSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT------TTSS-CCSHH
T ss_pred CCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhc------ccCC-CChHH
Confidence 421 01100000111 1 23778899998886 778999999 665322 22110111 1111 12122
Q ss_pred HHHHHHHHHHhC-----hhcHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeEEEEecCCcHHH---hhceeecc
Q 011842 351 PIFLWYTLNRKG-----YKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEF---VRRWQLAC 418 (476)
Q Consensus 351 ~l~~~~~l~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~iv~f~~~~~~~~---~~~~~l~~ 418 (476)
...+..+++... .+.+++..++..++++++.+.|++.+ +.. ..+...++.|...+...+ .++..+..
T Consensus 303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gv~v 381 (412)
T 1ajs_A 303 ARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNH-ITDQIGMFSFTGLNPKQVEYLINQKHIYL 381 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHH-HHHCCSSEEECCCCHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeE-EcCCCceEEEeCCCHHHHHHHHHhCCEEe
Confidence 222222332211 23567788888999999999999876 432 233333333432222211 11112211
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.. .+|++++. +|++++++++++|+++.++
T Consensus 382 ~~-~~Ris~~~-~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 382 LP-SGRINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp CT-TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred cC-CcEEEeee-CCHHHHHHHHHHHHHHHHh
Confidence 11 26988873 5899999999999988754
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=185.73 Aligned_cols=267 Identities=13% Similarity=0.009 Sum_probs=187.8
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC-CCCCccCH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC-LISGEIDC 221 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~-~~~g~~D~ 221 (476)
++++++++++|.+++ .+++|+|+|+|+..++.+.. ++.|+++.++|.++...++..|++++.+|+ ++++.+++
T Consensus 54 ~lr~~la~~~~~~~~--~i~~t~g~~~al~~~~~~l~----gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 127 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNN--AILVTNGPTAAFYQIAQAFR----GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF 127 (350)
T ss_dssp HHHHHHHHHTTCCGG--GEEEESHHHHHHHHHHHHTT----TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC
T ss_pred HHHHHHHHHhCcCHH--HEEEcCCHHHHHHHHHHHHC----CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc
Confidence 456667788888643 59999999999998887764 889999999999999999999999999999 65455655
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC-CCCCceEEEEecCcccccccccccCCCCCCcc-ccc
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG-FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIG 299 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g-~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~D 299 (476)
++++ +|++++++|++|.+.|+++|.++++.++ . ++++|++|+.+........ ..... ..+
T Consensus 128 --------~~~~---~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-----~li~Dea~~~~~~~~~~~~--~~~~~~~~~ 189 (350)
T 3fkd_A 128 --------SNMD---FCWLCNPNNPDGRLLQRTEILRLLNDHPDT-----TFVLDQSYVSFTTEEVIRP--ADIKGRKNL 189 (350)
T ss_dssp --------TTCS---EEEEESSCTTTCCCCCHHHHHHHHHHCTTS-----EEEEECTTTTSCSSCCCCG--GGGTTCSSE
T ss_pred --------CCCC---EEEEeCCCCCcCCCCCHHHHHHHHHhCCCC-----EEEEECchhhhccCcchhh--HHhhcCCCE
Confidence 3343 7778899999999999999999999987 6 9999999976543221111 11111 245
Q ss_pred EEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc-HHHHHHHHHHHH
Q 011842 300 SVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG-FQKEVQKCLRNA 377 (476)
Q Consensus 300 si~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g-~~~~~~~~~~~a 377 (476)
++..|++|+++ .++++|++++++++++.+...... .+ ...+.++++...+.... +.+.+++..+++
T Consensus 190 i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (350)
T 3fkd_A 190 VMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP---------WA---VNALAIEAAKFILIHPAQFTLPIRKWQRNT 257 (350)
T ss_dssp EEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT---------TC---SCHHHHHHHHHHHHCTTTTCCCHHHHHHHH
T ss_pred EEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC---------CC---CCHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 77889999887 778999999987776665432211 11 12344444444442222 333444445888
Q ss_pred HHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh------hceeecc-------cCCEEEEEEcCCCCHHHHHHHHHH
Q 011842 378 HYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV------RRWQLAC-------QGNIAHVVVMPNVTIDKLDDFLNE 442 (476)
Q Consensus 378 ~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~------~~~~l~~-------~~~~lRv~~~~~~T~edid~~~~~ 442 (476)
+++.+.|++.+...+.++.++++.+..+. ..++. ++..+.. ..+.+|+++. +.+++|+++++
T Consensus 258 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~a 334 (350)
T 3fkd_A 258 VDFITALNRLDGVEVHPSGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKA 334 (350)
T ss_dssp HHHHHHHHHSTTEEECCCSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEECCCCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHH
Confidence 99999999884444555666666666653 22322 2333321 1578999875 89999999999
Q ss_pred HHHHHH
Q 011842 443 LIENRS 448 (476)
Q Consensus 443 l~~~~~ 448 (476)
|+++.+
T Consensus 335 l~~~~~ 340 (350)
T 3fkd_A 335 LETFLE 340 (350)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-20 Score=188.35 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~ 214 (476)
....++++++++++|.+ ..+++++|++|+..++.++.. +++.|+++.+.|.+.... ++..|++++.++.+
T Consensus 59 ~~~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~~~~~--~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 132 (389)
T 3acz_A 59 PTVEQFEEMVCSIEGAA----GSAAFGSGMGAISSSTLAFLQ--KGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS 132 (389)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHTTTCC--TTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 45566777888888886 277888899999988877644 899999999999987665 57789999999874
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|++++ .+|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+... .. ++
T Consensus 133 -----d~~~l~~~i~~~~---~~v~~~~~~nptG~~~~l~~i~~~~~~~~~-----~livD~~~~~~~~~--~~---~~- 193 (389)
T 3acz_A 133 -----DVEKVKAAWKPNT---KMVYLESPANPTCKVSDIKGIAVVCHERGA-----RLVVDATFTSPCFL--KP---LE- 193 (389)
T ss_dssp -----CHHHHHHTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTC-----EEEEECTTTCTTTC--CG---GG-
T ss_pred -----CHHHHHHhcCCCC---eEEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCcccccc--Cc---cc-
Confidence 8999999987654 488889999999999999999999999999 99999999866431 11 22
Q ss_pred cccccEEEEcCCCCCCCCCC--ceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPMP--CGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~~--~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..+|+++.|+||++++|.. +|++++++ ++++.+.....+. ++. ..++..|++++.+ +.+..+++
T Consensus 194 -~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~--------g~~--~~~~~~~~~~~~l--~~l~~r~~ 260 (389)
T 3acz_A 194 -LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA--------GSL--MAPMDAFLCARGM--KTLPIRMQ 260 (389)
T ss_dssp -TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--------CCC--CCHHHHHHHHHHH--TTHHHHHH
T ss_pred -cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHcCc--cHHHHHHH
Confidence 2489999999999987765 59999998 7765553211111 111 1245566666554 45666778
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 011842 372 KCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~ 389 (476)
+..++++.+.+.|++.+.
T Consensus 261 ~~~~~~~~l~~~l~~~~~ 278 (389)
T 3acz_A 261 IHMENGLKVAKFLEQHEK 278 (389)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 888888999999988653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=197.67 Aligned_cols=291 Identities=12% Similarity=0.002 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++.+..+.+.++..+++ |+||++|+..++.+++...|++.|+++.++|.++...++..|++++.+|.
T Consensus 70 g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 149 (396)
T 2q7w_A 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAY 149 (396)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEec
Confidence 3468888888777543221101124777 99999999998877654348999999999999999999999999999998
Q ss_pred C--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc-c
Q 011842 214 L--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-K 287 (476)
Q Consensus 214 ~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~ 287 (476)
+ +++.+|+++|++++.+.+.+..+++++++.|+||.+.+ +++|+++|++||+ ++++|++|+++..... .
T Consensus 150 ~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~ 224 (396)
T 2q7w_A 150 YDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW-----LPLFDFAYQGFARGLEED 224 (396)
T ss_dssp EETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTTSSSCHHHH
T ss_pred ccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEecccccccCCccch
Confidence 5 56889999999999764323457777899999999854 6689999999999 9999999987644210 1
Q ss_pred cCCCCCCcc-c-ccEEEEcCCCCCC-CCCCceeEEe---ehh----hhhhhcCCccccCCCCCcccCCCCChhHHHHHHH
Q 011842 288 KAPKVSFKK-P-IGSVSVSGHKFVG-CPMPCGVQIT---RME----HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT 357 (476)
Q Consensus 288 ~~~~~~~~~-~-~Dsi~~s~hK~l~-~p~~~G~l~~---~~~----~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~ 357 (476)
..+...+.. . .++++.+++|+++ .++++|++++ +++ +.+.+.....+ +.. + ...+.++++
T Consensus 225 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~---~~~~~~~a~ 294 (396)
T 2q7w_A 225 AEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRA------NYS-N---PPAHGASVV 294 (396)
T ss_dssp THHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHT------TTS-S---CCHHHHHHH
T ss_pred hHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhh------ccC-C---CCcHHHHHH
Confidence 000000111 1 3467889999998 6788999997 443 33322110001 001 1 123444444
Q ss_pred HHHhCh--------hcHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeEEEEecCCcHHH---h--hceeecccC
Q 011842 358 LNRKGY--------KGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEF---V--RRWQLACQG 420 (476)
Q Consensus 358 l~~~g~--------~g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~iv~f~~~~~~~~---~--~~~~l~~~~ 420 (476)
...+.. +.+++..++..++++++.+.|++.+ +. +.++..+++.|...+...+ . +++.+..
T Consensus 295 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~-- 371 (396)
T 2q7w_A 295 ATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFS-FIIKQNGMFSFSGLTKEQVLRLREEFGVYAVA-- 371 (396)
T ss_dssp HHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCT-HHHHCCSSEEECCCCHHHHHHHHHHHCEECCT--
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-eecCCCceEEEecCCHHHHHHHHHhcCeeecC--
Confidence 444432 3456667788889999999999886 33 2233333334432222211 1 2222222
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
.+|+++.. .|++++++++++|+++
T Consensus 372 -~~Ris~~~-~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 -SGRVNVAG-MTPDNMAPLCEAIVAV 395 (396)
T ss_dssp -TCEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred -CceEEEee-cCHHHHHHHHHHHHhc
Confidence 26998874 4999999999999865
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-20 Score=189.33 Aligned_cols=283 Identities=11% Similarity=0.037 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHH-HHHHHHcC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSV-FKAARMYR------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~-~~~~~~~G------ 205 (476)
+...++++++++++|.+ .+++|+|||+|+..++.+++.. ..++.|++.++.|... ..+....+
T Consensus 81 ~~~~~l~~~la~~~~~~----~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~ 156 (406)
T 4adb_A 81 EPVLRLAKKLIDATFAD----RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQ 156 (406)
T ss_dssp HHHHHHHHHHHHHSSCS----EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTG
T ss_pred HHHHHHHHHHHhhCCCC----eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccc
Confidence 55677888899999865 3999999999999999887652 2336677666666554 34433333
Q ss_pred ------CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc-----cCHHHHHHHHHHhCCCCCceEEEE
Q 011842 206 ------MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV-----DDLDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 206 ------~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i-----d~l~~I~~ia~~~g~~~~~~~lhv 274 (476)
.++..+|.+ |+++|++++.++ +.+|+++ +.+++|.+ +++++|.++|++||+ ++|+
T Consensus 157 ~~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~-----~li~ 222 (406)
T 4adb_A 157 DFAPLPADIRHAAYN-----DINSASALIDDS---TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNA-----LLIF 222 (406)
T ss_dssp GGCSCCSSEEEECTT-----CHHHHHTTCSTT---EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTC-----EEEE
T ss_pred cCCCCCCCceEeCCC-----cHHHHHHHhcCC---eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 245555544 899999988643 3477777 77787754 579999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++.... .... .+... ..|++++ +|++++++++|+++.++++++.+...... .+ .+. ..+.
T Consensus 223 De~~~~~~~~g-~~~~-~~~~~~~~d~~t~--sK~~~~G~r~G~~~~~~~~~~~~~~~~~~-----~~--~~~---~~~~ 288 (406)
T 4adb_A 223 DEVQTGVGRTG-ELYA-YMHYGVTPDLLTT--AKALGGGFPVGALLATEECARVMTVGTHG-----TT--YGG---NPLA 288 (406)
T ss_dssp ECTTTTTTTTS-SSSH-HHHHTCCCSEEEE--CGGGGTTSCCEEEEECHHHHHTCCTTSSC-----CS--STT---CHHH
T ss_pred eccccCCCccc-hhHH-HHhcCCCCCEEEe--chhhcCCCCeEEEEEcHHHHhhhccCCcC-----CC--CCC---CHHH
Confidence 99997543221 1100 01111 2577754 89998888999999998877655322111 11 111 1334
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCC----eEeecCCeeEEEEecCC-----cHHHh-----hceee-cc
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGI----SAMLNELSSTVVFERPQ-----DEEFV-----RRWQL-AC 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~----~~~~~~~~~iv~f~~~~-----~~~~~-----~~~~l-~~ 418 (476)
+++++..+.....++..++..++++++.+.|++.+. .........++.+..+. ..++. +++.+ +.
T Consensus 289 ~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 368 (406)
T 4adb_A 289 SAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA 368 (406)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec
Confidence 443333331111167778888899999999887531 11111223455555443 22332 23333 33
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
..+.+|++++..+|+++|++++++|+++.+++.++
T Consensus 369 ~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 403 (406)
T 4adb_A 369 GGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVSR 403 (406)
T ss_dssp STTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999998877643
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=192.08 Aligned_cols=282 Identities=13% Similarity=0.037 Sum_probs=188.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-CccC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-GEID 220 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g~~D 220 (476)
.++++.+++++|.+ .+++|+|||+|+..++.++. ..|++.|+++.++|.++..+++..|++++.++++++ +.+|
T Consensus 38 ~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d 112 (367)
T 3nyt_A 38 TELEDRLADFVGAK----YCISCANGTDALQIVQMALG-VGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLD 112 (367)
T ss_dssp HHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred HHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence 34455577777875 38999999999999998873 238999999999999999999999999999999865 8999
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
+++|+++|++++ .+|+ +++++|...|+++|.++|++||+ ++|+|++|+.+......... .+ .|+
T Consensus 113 ~~~l~~~i~~~~---~~v~---~~~~~G~~~~~~~i~~la~~~~~-----~li~D~a~~~g~~~~~~~~~--~~---~di 176 (367)
T 3nyt_A 113 PQLLEAAITPRT---KAII---PVSLYGQCADFDAINAIASKYGI-----PVIEDAAQSFGASYKGKRSC--NL---STV 176 (367)
T ss_dssp GGGTGGGCCTTE---EEEC---CBCGGGCCCCHHHHHHHHHHTTC-----CBEEECTTTTTCEETTEETT--SS---SSE
T ss_pred HHHHHHhcCcCC---cEEE---eeCCccChhhHHHHHHHHHHcCC-----EEEEECccccCCeECCeecc--CC---CCE
Confidence 999999986543 3554 55688999999999999999999 99999999744321111111 11 277
Q ss_pred EEEc--CCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCC--CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 301 VSVS--GHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRD--ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 301 i~~s--~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~--~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
+++| +||+++++...|+++.+++ +.+.+.....+-.... ....+.......+..++++..+ +.+++..++..+
T Consensus 177 ~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~ 254 (367)
T 3nyt_A 177 ACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKL--EIFEEEIALRQK 254 (367)
T ss_dssp EEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHH--HTHHHHHHHHHH
T ss_pred EEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 7777 5899987334778887654 4433321111100000 0011112122344444444433 456778888899
Q ss_pred HHHHHHHHHHhcCCeEeecC-C----eeEEEEecCCcHHHhh-----ceee------cc-------------------cC
Q 011842 376 NAHYLKDRLLDAGISAMLNE-L----SSTVVFERPQDEEFVR-----RWQL------AC-------------------QG 420 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~-~----~~iv~f~~~~~~~~~~-----~~~l------~~-------------------~~ 420 (476)
+++++.+.|++.++.....+ . ..++.+..++.+.+.+ ++.+ +. ..
T Consensus 255 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (367)
T 3nyt_A 255 VAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAAT 334 (367)
T ss_dssp HHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHh
Confidence 99999999999875433221 1 1233444443333221 1111 10 02
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+|+.+++.+|++||+++++.|++.
T Consensus 335 ~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 335 QVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred CeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-20 Score=189.10 Aligned_cols=290 Identities=9% Similarity=-0.079 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH--HHHHHHHhhCC------------CcEEEecCCCchHHHHHH
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNL--HGILVGREVFP------------DGILYASRESHYSVFKAA 201 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~--~al~aa~~~~p------------~~~Vl~s~~~H~S~~~~~ 201 (476)
+..++++++.+| ++++++ ++++|+|++++++ ..+.+... + ++.|+++.++|.++...+
T Consensus 77 G~~~lr~~ia~~----~~~~~~--~i~~t~G~~~al~l~~~~~~l~~--~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~ 148 (422)
T 3d6k_A 77 GIADIRELWAEA----LGLPAD--LVVAQDGSSLNIMFDLISWSYTW--GNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT 148 (422)
T ss_dssp CCHHHHHHHHHH----HTCCGG--GEEECSSCHHHHHHHHHHHHHHH--CCTTCSSCGGGSSCCEEEEEESCCHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCChh--HEEEecchHHHHHHHHHHHHhcC--cccccccccccCCCCEEEEeCCccHHHHHHH
Confidence 355677765555 477643 5999999999973 44444443 3 347999999999999999
Q ss_pred HHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEE-EeeCCCccccccCHH---HHHHHHH-HhCCCCCceEEEEec
Q 011842 202 RMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIIN-VNIGTTVKGAVDDLD---LVIQTLE-ESGFTQDRFYIHCDG 276 (476)
Q Consensus 202 ~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv-~t~gtt~tG~id~l~---~I~~ia~-~~g~~~~~~~lhvD~ 276 (476)
+..|++++.+|++++| +|+++|++++.+. ++.+|+ ++++.|+||.+.+.+ +|+++|+ +||+ ++++|+
T Consensus 149 ~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~--~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~-----~li~De 220 (422)
T 3d6k_A 149 EHFGFEMINVPMTDEG-PDMGVVRELVKDP--QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDF-----RIVWDN 220 (422)
T ss_dssp HHHTCEEEEEEEETTE-ECHHHHHHHHTST--TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTC-----EEEEEC
T ss_pred HHcCCEEEecCCCCCC-CCHHHHHHHHhcC--CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCC-----EEEEEC
Confidence 9999999999997665 9999999999652 233555 578899999998866 7777787 8999 999999
Q ss_pred Cccc-ccccccc-cCCCCCC-----cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCCh
Q 011842 277 ALFG-LMMPFVK-KAPKVSF-----KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 277 a~~g-~~~~~~~-~~~~~~~-----~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~ 349 (476)
+|+. .+..... ..+..+. ....+++..+++|+++.++++|++++++++++.+.....+. ..+.
T Consensus 221 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~~~~~~~-------~~~~--- 290 (422)
T 3d6k_A 221 AYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVR-------GIGP--- 290 (422)
T ss_dssp TTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHH-------CSCC---
T ss_pred CccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHHHHHHhh-------cCCC---
Confidence 9973 2211111 1111110 11246778889999777789999999988766553222111 1111
Q ss_pred hHHHHHHHHHHhCh-h----cHHHHHHHHHHHHHHHHHHHHh----cCCeEe-ecCCeeEEEEecCC--cHHHh-----h
Q 011842 350 APIFLWYTLNRKGY-K----GFQKEVQKCLRNAHYLKDRLLD----AGISAM-LNELSSTVVFERPQ--DEEFV-----R 412 (476)
Q Consensus 350 ~~l~~~~~l~~~g~-~----g~~~~~~~~~~~a~~l~~~L~~----~g~~~~-~~~~~~iv~f~~~~--~~~~~-----~ 412 (476)
..+.++++...+.. . .+++..+++.++++++.+.|++ .|...+ .+...+.+.+..+. ...+. +
T Consensus 291 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~ 370 (422)
T 3d6k_A 291 NKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEA 370 (422)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHC
Confidence 24555555555543 2 2344445555566667776654 444333 33345666666653 22222 2
Q ss_pred ceeecc-----------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 413 RWQLAC-----------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 413 ~~~l~~-----------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+..+.. ..+.+|+++.. +|+++++++++.|+++.+++.+
T Consensus 371 gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 371 GIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp TEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 233321 13678998877 8999999999999998877643
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=192.03 Aligned_cols=288 Identities=13% Similarity=0.083 Sum_probs=186.9
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc-hHHHHHHHHcCCeEEEEeCCC------
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH-YSVFKAARMYRMECVKVDCLI------ 215 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H-~S~~~~~~~~G~~v~~v~~~~------ 215 (476)
++++.+++++|.+ .+++|+|||+|+..++.++.. ||+ +++.++| .++..+++..|++++.+++++
T Consensus 79 ~l~~~la~~~~~~----~~~~~~~gt~a~~~al~~l~~--~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~ 150 (456)
T 2ez2_A 79 HLERTVQELFGFK----HIVPTHQGRGAENLLSQLAIK--PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL 150 (456)
T ss_dssp HHHHHHHHHHCCS----EEEEESSHHHHHHHHHHHHCC--TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC
T ss_pred HHHHHHHHHhCCC----cEEEeCCcHHHHHHHHHHhCC--CCC--EeccccccchhHHHHHHcCCEEEEecccccccccc
Confidence 3444566667765 389999999999999988854 788 6677888 888889999999999998863
Q ss_pred ----CCccCHHHHHHHHHcCC-CCcEEEEEeeCCC-ccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc-----
Q 011842 216 ----SGEIDCADFKAKLLQNK-DKPAIINVNIGTT-VKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL----- 281 (476)
Q Consensus 216 ----~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt-~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~----- 281 (476)
++.+|+++|+++|++++ ..+.+|+++++.+ ++|.+.+ +++|+++|++||+ ++|+|++|+.+
T Consensus 151 ~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i-----~li~De~~~~g~~~~~ 225 (456)
T 2ez2_A 151 NIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGI-----KVFYDATRCVENAYFI 225 (456)
T ss_dssp CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTC-----CEEEECTTHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCC-----eEEEEccccccccccc
Confidence 26899999999998765 2235778887877 8998866 9999999999999 99999999753
Q ss_pred ----cccccccCCCC--CCcccccEEEEcCCCCCCCCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 282 ----MMPFVKKAPKV--SFKKPIGSVSVSGHKFVGCPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 282 ----~~~~~~~~~~~--~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
..........+ ......|++++|+||+++.| .+|+++.+ +++++.+.....+..+ ..+..+ .+.. .+..
T Consensus 226 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~a 301 (456)
T 2ez2_A 226 KEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEG-MPSYGG-LAGR-DMEA 301 (456)
T ss_dssp HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTC-CTTTTT-CCHH-HHHH
T ss_pred cccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccC-cccccC-cchh-HHHH
Confidence 11111100000 00122688888899998865 68888884 5555443221111100 000111 1111 1211
Q ss_pred HHHHHHhChhcH-HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEec----C--CcHHH-----hh------ceee
Q 011842 355 WYTLNRKGYKGF-QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER----P--QDEEF-----VR------RWQL 416 (476)
Q Consensus 355 ~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~----~--~~~~~-----~~------~~~l 416 (476)
+++... +.+ ++..++..++++++.+.|++.|+....+...+++.+.. + +..++ .+ +..+
T Consensus 302 -~a~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~ 378 (456)
T 2ez2_A 302 -MAIGLR--EAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRS 378 (456)
T ss_dssp -HHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEEC
T ss_pred -HHHHHH--HHhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeee
Confidence 122221 222 46677778888999999988776544444455555543 2 12222 21 2221
Q ss_pred -ccc-----------------CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Q 011842 417 -ACQ-----------------GNIAHVVVMPN-VTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 417 -~~~-----------------~~~lRv~~~~~-~T~edid~~~~~l~~~~~~~ 450 (476)
+.. .+.+|+++... +|+++|++++++|+++.++.
T Consensus 379 ~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 379 MERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp EEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred ecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 211 26789998766 89999999999999987653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=190.21 Aligned_cols=278 Identities=13% Similarity=0.087 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC----C-CcEEEecCCC-chHHHHHHHHcCCe-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF----P-DGILYASRES-HYSVFKAARMYRME----- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~----p-~~~Vl~s~~~-H~S~~~~~~~~G~~----- 207 (476)
+...++++++++++|.+ .+++|+|||+|+..++.+++... + ++.|++.++. |.++..+++..|.+
T Consensus 82 ~~~~~l~~~la~~~g~~----~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~ 157 (397)
T 2ord_A 82 RPQMELAELLSKNTFGG----KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKP 157 (397)
T ss_dssp HHHHHHHHHHHHTTTSC----EEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGG
T ss_pred HHHHHHHHHHHHhcCCC----eEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccc
Confidence 56667778888888843 38999999999999998876421 3 3455555544 56666677788876
Q ss_pred -------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc----ccCHHHHHHHHHHhCCCCCceEEEEec
Q 011842 208 -------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGA----VDDLDLVIQTLEESGFTQDRFYIHCDG 276 (476)
Q Consensus 208 -------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~----id~l~~I~~ia~~~g~~~~~~~lhvD~ 276 (476)
++.+|.+ |+++|+++++++ +.+|+++++++++|. .+++++|+++|++||+ ++++|+
T Consensus 158 ~~p~~~~~~~~~~~-----d~~~l~~~l~~~---~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~-----~li~De 224 (397)
T 2ord_A 158 FEPLVPGFEYFEFN-----NVEDLRRKMSED---VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDA-----LLVFDE 224 (397)
T ss_dssp GCSCCTTEEEECTT-----CHHHHHHHCCTT---EEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTC-----EEEEEC
T ss_pred cCCCCCCeeEecCC-----CHHHHHHHhhcC---eEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-----EEEEEe
Confidence 7777764 899999998643 458888889999998 3789999999999999 999999
Q ss_pred CcccccccccccCCCCC-CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 277 ALFGLMMPFVKKAPKVS-FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 277 a~~g~~~~~~~~~~~~~-~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
+|+++... ..... +. .....|++++ +|++++|+++|+++++++++ .+... . ...++ +.+........
T Consensus 225 ~~~~~~~~-g~~~~-~~~~~~~~d~~s~--sK~~~~G~r~G~~~~~~~~~-~l~~~-~----~~~~~--~~~~~~~~a~~ 292 (397)
T 2ord_A 225 VQCGMGRT-GKLFA-YQKYGVVPDVLTT--AKGLGGGVPIGAVIVNERAN-VLEPG-D----HGTTF--GGNPLACRAGV 292 (397)
T ss_dssp TTTTTTTT-SSSSH-HHHHTCCCSEEEE--CGGGGTTSCCEEEEECSTTC-CCCTT-S----SCCSS--TTCHHHHHHHH
T ss_pred cccCCccC-ccchh-hhhhCCCCCeeee--ccccCCCcCeEEEEEchHhc-ccCCC-C----cCCCC--CCCHHHHHHHH
Confidence 99754321 11110 00 0112576644 69999889999999998764 33211 0 01111 11212222233
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc--CCeE--eecCCeeEEEEecCC---cHHHh-----hceeec-ccCCE
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA--GISA--MLNELSSTVVFERPQ---DEEFV-----RRWQLA-CQGNI 422 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--g~~~--~~~~~~~iv~f~~~~---~~~~~-----~~~~l~-~~~~~ 422 (476)
++++.+.. ++..++..++++++.+.|++. ++.. ..++..+++.+..+. ..++. +++.+. ...+.
T Consensus 293 ~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~ 369 (397)
T 2ord_A 293 TVIKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGNNT 369 (397)
T ss_dssp HHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETTTE
T ss_pred HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCCCCE
Confidence 44444332 456777888889999998875 2321 122334556666543 23332 233332 23578
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+|++++..+|++++++++++|+++.+
T Consensus 370 iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 370 IRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 99998888999999999999988764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-20 Score=189.59 Aligned_cols=287 Identities=13% Similarity=0.082 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH---HHHHHcC--CeEEEEe
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF---KAARMYR--MECVKVD 212 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~---~~~~~~G--~~v~~v~ 212 (476)
..+++.+++++++++|.+.. -+++++|++|+..++.++.. |++.|+++.++|.++. ......| ...+.++
T Consensus 75 ~~~~~~~~~~la~~~~~~~~---~v~~~sGs~a~~~a~~~~~~--~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 149 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFGADYA---NVQPHSGSQANFAVYTALLQ--PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYG 149 (420)
T ss_dssp HHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHCC--TTCEEEEEEEC------------CHHHHSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCc---eeEecCcHHHHHHHHHHhcC--CCCEEEecchhhcceeccchhhhhcccceeEEecc
Confidence 46677778999999999642 34456669999999888765 9999999999998843 2222333 3555667
Q ss_pred CCCCCccCHHHHHHHHHcC-CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 213 CLISGEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.+.++.+|+++|++++.++ ++ +|+++++++ |...|+++|.++|++||+ ++++|++|+.+........
T Consensus 150 ~~~~~~~d~~~l~~~i~~~~~~---~v~~~~~~~--~~~~~l~~l~~l~~~~~~-----~li~De~~~~~~~~~~~~~-- 217 (420)
T 3gbx_A 150 IDESGKIDYDEMAKLAKEHKPK---MIIGGFSAY--SGVVDWAKMREIADSIGA-----YLFVDMAHVAGLIAAGVYP-- 217 (420)
T ss_dssp ECTTCSCCHHHHHHHHHHHCCS---EEEECCTTC--CSCCCHHHHHHHHHHTTC-----EEEEECTTTHHHHHTTSSC--
T ss_pred CCccCCcCHHHHHHHHHhcCCe---EEEEecCcc--CCccCHHHHHHHHHHcCC-----EEEEECCcchhceecccCC--
Confidence 7777889999999999874 43 777766554 468899999999999999 9999999875443222111
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeeh---hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRM---EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~---~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
.. ...+|+++.++||++++|. .|+++.++ ++.+.+.. +... ...++.......++++++.....+++++
T Consensus 218 ~~-~~~~di~~~s~sK~~~g~~-gg~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~a~~~a~~~~~~~~~~~ 289 (420)
T 3gbx_A 218 NP-VPHAHVVTTTTHKTLAGPR-GGLILAKGGDEELYKKLNS---AVFP---SAQGGPLMHVIAGKAVALKEAMEPEFKV 289 (420)
T ss_dssp CS-TTTSSEEEEESSGGGCSCS-CEEEEESSCCHHHHHHHHH---HHC-------CCCCHHHHHHHHHHHHHTTSHHHHH
T ss_pred cc-cccCCEEEeecccCCCCCC-ceEEEEcCCcHHHHHHhhh---hcCC---CCCCCcchhHHHHHHHHHHHHHhHhHHH
Confidence 11 1238999999999997555 48888887 55443321 1110 0112222222334444555544567788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC---c-HHH---h--hceeecc-----------cCCEEEEEE
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ---D-EEF---V--RRWQLAC-----------QGNIAHVVV 427 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~---~-~~~---~--~~~~l~~-----------~~~~lRv~~ 427 (476)
+.++..++++++.+.|++.|+..+.+ ..++++.+..+. + ..+ . +++.+.. ....+|+++
T Consensus 290 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~ 369 (420)
T 3gbx_A 290 YQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGS 369 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEec
Confidence 99999999999999999988765443 345566665432 1 222 1 2333322 124599987
Q ss_pred cCC----CCHHHHHHHHHHHHHHHHH
Q 011842 428 MPN----VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 428 ~~~----~T~edid~~~~~l~~~~~~ 449 (476)
... .++++|+++++.|+++.+.
T Consensus 370 ~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 370 PAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred chhcccCCCHHHHHHHHHHHHHHHhC
Confidence 543 5799999999999887653
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-21 Score=194.66 Aligned_cols=291 Identities=12% Similarity=0.016 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEE--cCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYI--TNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~--t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+..++++++.+++... +.++ ..+++ |+||++|+..++.+++...|++.|+++.++|.++...++..|++++.+|.
T Consensus 70 g~~~lr~~la~~~~~~-~~~~--~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 146 (394)
T 2ay1_A 70 GEPEFQKAMGELILGD-GLKS--ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRY 146 (394)
T ss_dssp CCHHHHHHHHHHHHGG-GCCG--GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEEC
T ss_pred CcHHHHHHHHHHHhCC-CCCc--ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEec
Confidence 3468888887776422 2232 35888 99999999999887765448899999999999999999999999999998
Q ss_pred C--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccccc-c
Q 011842 214 L--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV-K 287 (476)
Q Consensus 214 ~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~-~ 287 (476)
+ .++.+|+++|++++.+.+.+..+++++++.|+||.+.+ +++|+++|++||+ ++++|++|+++..... .
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~-----~li~De~~~~~~~~~~~~ 221 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA-----LPLIDLAYQGFGDGLEED 221 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEECCTTSSSCHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCC-----EEEEecCccccccCcccc
Confidence 5 56789999999999865333456777899999999865 6688999999999 9999999987554210 0
Q ss_pred cCCCCCCcc-cc-cEEEEcCCCCCC-CCCCceeEEe---ehhhhhhhcCCcc-ccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 288 KAPKVSFKK-PI-GSVSVSGHKFVG-CPMPCGVQIT---RMEHINVLSSNVE-YLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 288 ~~~~~~~~~-~~-Dsi~~s~hK~l~-~p~~~G~l~~---~~~~~~~l~~~~~-yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
..+...+.. .. +++..+++|+++ .++++|++++ ++++++.+..... ... .+..+ .+ .+.++++.+.
T Consensus 222 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~-~~---~~~~~a~~~~ 294 (394)
T 2ay1_A 222 AAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNR---QTYSF-PP---FHGAKIVSTV 294 (394)
T ss_dssp HHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH---TTTSS-CC---CHHHHHHHHH
T ss_pred hHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHh---hhcCC-CC---hHHHHHHHHH
Confidence 000000111 12 356778999997 6788999998 4543322211000 000 01111 12 2233333333
Q ss_pred hC--------hhcHHHHHHHHHHHHHHHHHHHHhcC----CeEeecCCeeEEEEecCCcHHH---h--hceeecccCCEE
Q 011842 361 KG--------YKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEF---V--RRWQLACQGNIA 423 (476)
Q Consensus 361 ~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g----~~~~~~~~~~iv~f~~~~~~~~---~--~~~~l~~~~~~l 423 (476)
+. .+.+++..++..++++++.+.|++.+ +....+...+++.+..+ ...+ . +++.+.. .+
T Consensus 295 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~gi~v~~---~~ 370 (394)
T 2ay1_A 295 LTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-PEQVKRIKEEFGIYMVG---DS 370 (394)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-HHHHHHHHHHHCEECCT---TC
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC-HHHHHHHHHhCCEEecC---CC
Confidence 21 23567778888889999999998875 33333333444443333 2222 1 1222222 26
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~ 446 (476)
|+++. .+|+++|++++++|+++
T Consensus 371 Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 371 RINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred eEEee-cCCHhhHHHHHHHHHHc
Confidence 99877 57999999999999875
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=185.41 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH----cCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM----YRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~----~G~~v~~v~~~ 214 (476)
...+++.+++++++|.+. .++++||++|+..++.++.. ||+.|+++.+.|.+....++. +|++++.+|.+
T Consensus 81 p~~~~l~~~la~~~g~~~----~~~~~sG~~Ai~~al~~l~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 154 (414)
T 3ndn_A 81 PTVSVFEERLRLIEGAPA----AFATASGMAAVFTSLGALLG--AGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD 154 (414)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHTTCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC
Confidence 566778888999998742 78999999999988887754 899999999999987766644 89999999986
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|++++.++++ +|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+.... ..
T Consensus 155 -----d~~~l~~ai~~~t~---~v~le~p~NptG~~~~l~~i~~la~~~g~-----~livDe~~~~~~~~~-------~~ 214 (414)
T 3ndn_A 155 -----DLSQWERALSVPTQ---AVFFETPSNPMQSLVDIAAVTELAHAAGA-----KVVLDNVFATPLLQQ-------GF 214 (414)
T ss_dssp -----CHHHHHHHTSSCCS---EEEEESSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTHHHHCC-------CG
T ss_pred -----CHHHHHHhcCCCCe---EEEEECCCCCCCccccHHHHHHHHHHcCC-----EEEEECCCcccccCC-------ch
Confidence 89999999987665 88889999999999999999999999999 999999998443210 11
Q ss_pred cccccEEEEcCCCCCCCC--CCceeEEeehhhhh-hhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCP--MPCGVQITRMEHIN-VLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~-~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..++|+++.|++|+++.+ ..+|+++.+++.+. .+......+ ++. ..++..|.+++. .+.+..+++
T Consensus 215 ~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~--------g~~--~~~~~a~~~~~~--l~~l~~r~~ 282 (414)
T 3ndn_A 215 PLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHT--------GPA--MSAFNAWVLLKG--LETLAIRVQ 282 (414)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHH--------CCC--CCHHHHHHHHHH--GGGHHHHHH
T ss_pred hcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHc--------CCC--CCHHHHHHHHHH--HHHHHHHHH
Confidence 223799999999999853 34899999887543 332111111 111 124555655553 466788888
Q ss_pred HHHHHHHHHHHHHHhcCCe
Q 011842 372 KCLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~ 390 (476)
+..++++++.+.|++.+..
T Consensus 283 ~~~~~a~~l~~~L~~~p~v 301 (414)
T 3ndn_A 283 HSNASAQRIAEFLNGHPSV 301 (414)
T ss_dssp HHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHhcCCCE
Confidence 9999999999999987643
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-20 Score=185.83 Aligned_cols=279 Identities=14% Similarity=0.079 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCCCchHHH-HHHHHc--------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRESHYSVF-KAARMY-------- 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~~H~S~~-~~~~~~-------- 204 (476)
+..+++.+++++++|.+ .+++|+|||+|+..++.+++.. .+++.|++.++.|+... .+....
T Consensus 78 ~~~~~l~~~la~~~~~~----~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 153 (395)
T 3nx3_A 78 ENIAAAAKNLAKASALE----RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKP 153 (395)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGG
T ss_pred HHHHHHHHHHHHhcCCC----eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccc
Confidence 66778888899988842 4999999999999999988754 35677887777764432 222221
Q ss_pred ----CCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEec
Q 011842 205 ----RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDG 276 (476)
Q Consensus 205 ----G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~ 276 (476)
+.++..+|.+ |+++|+++++++ +.+|+++...+++|.+.+ +++|.++|++||+ ++|+|+
T Consensus 154 ~~~~~~~~~~~~~~-----d~~~l~~~l~~~---~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~De 220 (395)
T 3nx3_A 154 FKPLISGVKFAKYN-----DISSVEKLVNEK---TCAIILESVQGEGGINPANKDFYKALRKLCDEKDI-----LLIADE 220 (395)
T ss_dssp GCSCCSCEEEECTT-----CHHHHHTTCCTT---EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTC-----EEEEEC
T ss_pred cCCCCCCcEEeCCC-----CHHHHHHhccCC---eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCC-----EEEEEe
Confidence 2356666654 899999988643 347777777788899877 9999999999999 999999
Q ss_pred CcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 277 ALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 277 a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
+|.++........ .+... ..|+++++ |.++.++++|++++++++ .+.+.... + ..++.+ .++.+
T Consensus 221 v~~~~g~~g~~~~--~~~~~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~-~----~~~~~~-----~~~~~ 286 (395)
T 3nx3_A 221 IQCGMGRSGKFFA--YEHAQILPDIMTSA--KALGCGLSVGAFVINQKVASNSLEAGD-H----GSTYGG-----NPLVC 286 (395)
T ss_dssp TTTTTTTTSSSSG--GGGGTCCCSEEEEC--GGGTTTSCCEEEEECHHHHHHHSCTTC-C----SSCBSC-----CHHHH
T ss_pred cccCCCcCCcchh--HHhcCCCCCEEEec--ccccCCCceEEEEEchhhhhhhcCCcc-c----CCCCCC-----CHHHH
Confidence 9976422111000 11111 25777654 877778999999999987 66653211 0 011111 23444
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEecCC---cHHHh-----hceee-cccCC
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFERPQ---DEEFV-----RRWQL-ACQGN 421 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l-~~~~~ 421 (476)
++++..+..-.-++..++..++.+++++.|++ .+.....++..+++.+..+. ...+. ++..+ +...+
T Consensus 287 ~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 366 (395)
T 3nx3_A 287 AGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCGEN 366 (395)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCCCC
Confidence 44443332111134556666666667666655 34333333334555565543 22222 23333 33468
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+|++++..+|+++|++++++|+++.+
T Consensus 367 ~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 367 DLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=186.86 Aligned_cols=292 Identities=12% Similarity=0.030 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCCCch-HHHHHHHHcC-------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRESHY-SVFKAARMYR------- 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~~H~-S~~~~~~~~G------- 205 (476)
....++.+.++++++.+.+ ++++|+|||+|+..++.+++.. .|++.|++.+++|. +...++...|
T Consensus 86 ~~~~~l~~~la~~~~~~~~--~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 163 (429)
T 1s0a_A 86 APAIELCRKLVAMTPQPLE--CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS 163 (429)
T ss_dssp HHHHHHHHHHHHHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred HHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcc
Confidence 3445666778888887543 5999999999999999876531 15778888776544 3333333322
Q ss_pred ------CeEEEEeCCC------CCccCHHHHHHHHHcCCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHhCCCCC
Q 011842 206 ------MECVKVDCLI------SGEIDCADFKAKLLQNKDKPAIINVNIG-TTVKGAVDD----LDLVIQTLEESGFTQD 268 (476)
Q Consensus 206 ------~~v~~v~~~~------~g~~D~~~Le~~l~~~~~~p~~vv~t~g-tt~tG~id~----l~~I~~ia~~~g~~~~ 268 (476)
.+++.++.+. .+.+|+++|+++|++...++.+|+++.. .+++|.+.| +++|.++|++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~--- 240 (429)
T 1s0a_A 164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI--- 240 (429)
T ss_dssp GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC---
T ss_pred cccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCC---
Confidence 1355565531 2468999999999753223346666555 688998777 9999999999999
Q ss_pred ceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc--cccCCCCCcccC
Q 011842 269 RFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV--EYLASRDATIMG 344 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~--~yl~~~~~~~~~ 344 (476)
++|+|++|+++.... ... .++... ..|+++++ |+++.| +++|++++++++++.+.... .+.. ..++
T Consensus 241 --~li~De~~~~~g~~g-~~~-~~~~~~~~~d~~t~s--K~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~--~~t~-- 310 (429)
T 1s0a_A 241 --LLIADEIATGFGRTG-KLF-ACEHAEIAPDILCLG--KALTGGTMTLSATLTTREVAETISNGEAGCFMH--GPTF-- 310 (429)
T ss_dssp --EEEEECTTTTTTTTS-SSS-GGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSC--CCTT--
T ss_pred --EEEEeehhhCCcccc-hHH-HhhhcCCCCCEEEec--ccccCCCccceEEEeCHHHHHHhhcCCCccccc--CCCC--
Confidence 999999997542211 100 011111 26777654 888878 89999999988766654311 1100 0111
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---CeEeecCCeeEEEEecCC---cHHHh-----hc
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---ISAMLNELSSTVVFERPQ---DEEFV-----RR 413 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~iv~f~~~~---~~~~~-----~~ 413 (476)
+.+.....+..++++.+.. ++..++..+++++|.++|++.+ .....++..+++.+..+. ...+. ++
T Consensus 311 ~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~G 387 (429)
T 1s0a_A 311 MGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQG 387 (429)
T ss_dssp TTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCC
Confidence 1111222223334443322 2456777888999999998752 222222233455555542 22232 23
Q ss_pred eeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 414 WQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 414 ~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+.+...++.+|++++..+|++||++++++|+++.+
T Consensus 388 i~v~~~~~~iRis~~~~~t~e~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 388 VWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422 (429)
T ss_dssp EECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTS
T ss_pred CEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 34433457899999889999999999999988753
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=197.35 Aligned_cols=303 Identities=13% Similarity=0.040 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHHHHHH-cC-CCCC-cccEEEcCCchhHHHHHHHHHHh---hCCCcEEEecCCCchHHHHHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARL-WE-LENN-EYWGYITNCGTEGNLHGILVGRE---VFPDGILYASRESHYSVFKAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l-~g-~~~~-~~~g~~t~ggt~An~~al~aa~~---~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~ 209 (476)
+..++++++.+++.+. .+ .+.. +..+++|+|+|+|+..++.+... ..|++.|+++.++|.++..+++..|++++
T Consensus 139 g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~ 218 (533)
T 3f6t_A 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELV 218 (533)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEE
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEE
Confidence 5679999999999777 23 3332 24699999999999988876311 23889999999999999999999999999
Q ss_pred EEeCC----CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHH---HHHHHHH-HhCCCCCceEEEEecCcccc
Q 011842 210 KVDCL----ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLD---LVIQTLE-ESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 210 ~v~~~----~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~---~I~~ia~-~~g~~~~~~~lhvD~a~~g~ 281 (476)
.++++ .++.+|+++|++++.+++ .+|++++++|++|.+.+.+ +|+++|+ +||+ ++++|++|+.+
T Consensus 219 ~v~~~~~~~~~~~~d~~~l~~~l~~~~---k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~-----~li~De~y~~~ 290 (533)
T 3f6t_A 219 EVDLHSYEKNDWEIEPNEIEKLKDPSI---KALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKL-----MIISDEVYGAF 290 (533)
T ss_dssp EECCCEETTTTSEECHHHHHHHSCTTE---EEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTC-----EEEEECTTGGG
T ss_pred EEEecCCcccCCCCCHHHHHHHhCCCC---eEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCC-----EEEEcCCcccc
Confidence 99985 357899999999986544 4777889999999997655 8888888 6899 99999999865
Q ss_pred cccccccCCCCCCcccccEEEEcCCCCCC-CCCCceeEEeehh-----hhhhhcC---------------Cc---ccc--
Q 011842 282 MMPFVKKAPKVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRME-----HINVLSS---------------NV---EYL-- 335 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~-----~~~~l~~---------------~~---~yl-- 335 (476)
..... +........++++.|++|.++ .++++|+++++++ +++.+.. .+ .++
T Consensus 291 ~~~~~---~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~r 367 (533)
T 3f6t_A 291 VPNFK---SIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDR 367 (533)
T ss_dssp STTCC---CHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHH
T ss_pred ccCcc---CHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHH
Confidence 54211 101111225688899999886 6788999999876 3332210 00 000
Q ss_pred -----CCCCCcccCCCCChhHHHHHH----HHHHh--------ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-
Q 011842 336 -----ASRDATIMGSRNGHAPIFLWY----TLNRK--------GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS- 397 (476)
Q Consensus 336 -----~~~~~~~~~sr~~~~~l~~~~----~l~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~- 397 (476)
.........+. ....+.+ ++..+ ....+++..+++.+++++|.+.|. .++.. ..+..
T Consensus 368 l~~~~~~~~~~~~~~~---~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~-~~~~~g 442 (533)
T 3f6t_A 368 LCADSRSIGLYHTAGL---STPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDE-TDTNTH 442 (533)
T ss_dssp HHHHHTTTTTGGGCSC---CHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCC-STTBCC
T ss_pred HHHHHHHHHHhcccCC---ChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCccc-cCCCce
Confidence 00000011111 1222222 33333 224467777888889999999997 66532 33333
Q ss_pred eEEEEecC-------------------CcHHHh----h--ceeecc------cCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 398 STVVFERP-------------------QDEEFV----R--RWQLAC------QGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 398 ~iv~f~~~-------------------~~~~~~----~--~~~l~~------~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
..+.+..+ .+.++. + +..+.. ..+.+|+++. ..++++|+.+++.|.++
T Consensus 443 ~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~ 521 (533)
T 3f6t_A 443 YYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLEL 521 (533)
T ss_dssp SEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHH
T ss_pred EEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHH
Confidence 33333322 111221 1 222211 1468999884 46899999999999999
Q ss_pred HHHHHhcCC
Q 011842 447 RSTWYEDGK 455 (476)
Q Consensus 447 ~~~~~~~~~ 455 (476)
.+++.+..+
T Consensus 522 l~~~~~~~~ 530 (533)
T 3f6t_A 522 LKEYYEEFK 530 (533)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 988876554
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=187.93 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=178.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc--EEEecCCCchHHHH---HHHHcCCeEEEEeCCCC
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG--ILYASRESHYSVFK---AARMYRMECVKVDCLIS 216 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~--~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~~~~ 216 (476)
.++++++++++|.+. .++++|||+|+..++.++.. +++ +|+++...|++... .+...|++++.++. ++
T Consensus 50 ~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~~--~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~ 122 (357)
T 3lws_A 50 EPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWSD--ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-AD 122 (357)
T ss_dssp HHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHHH--HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TT
T ss_pred HHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHhh--cCCCcEEEecccceeeeeccchhhhccCcEEEEecC-CC
Confidence 345566788888753 57778999999999988776 555 89999999987654 45667999988885 46
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCcc-ccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVK-GAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~t-G~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+.+|+++|+++. ++ .+|+++++++++ |.+.+ +++|+++|++||+ |+|+|++|......... ....
T Consensus 123 ~~~d~~~l~~~~--~~---~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~-----~li~D~a~~~~~~~~~~-~~~~ 191 (357)
T 3lws_A 123 RLMTLDEIKALP--DI---ACLLLELPQREIGGVAPAFSELETISRYCRERGI-----RLHLDGARLFEMLPYYE-KTAA 191 (357)
T ss_dssp SCCCHHHHHTCC--SC---SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTC-----EEEEEETTHHHHHHHHT-CCHH
T ss_pred CCcCHHHHhcCc--Cc---ceEEEEcccccCCceeCCHHHHHHHHHHHHHcCC-----EEEEECchhhhhhhhcC-CChH
Confidence 789999999872 23 378888898887 88764 9999999999999 99999998622111100 0001
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCC-hhHHHHHHHHHHhChhcHHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNG-HAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~-~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
.+...+|+++.++||++++|.+ |+++.++++++.+.......... .+.. ..+.....+++. ..+.++
T Consensus 192 ~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~-----~~~~~~ 259 (357)
T 3lws_A 192 EIAGLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGGD------LISLYPYIVSADYYYEL-----RKDRMG 259 (357)
T ss_dssp HHHTTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC------CSCCHHHHHHHHHHHHH-----HTTCHH
T ss_pred HHHhcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcCC------cccchHHHHHHHHHHHH-----HHHHHH
Confidence 1112368889999999977777 88888887765553211111100 0111 111111222322 223345
Q ss_pred HHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEecCCc-----HHHh-----hceeecc------cCCEEEEEEcCC---
Q 011842 372 KCLRNAHYLKDRLLDAGISAM--LNELSSTVVFERPQD-----EEFV-----RRWQLAC------QGNIAHVVVMPN--- 430 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~~~~-----~~~~-----~~~~l~~------~~~~lRv~~~~~--- 430 (476)
+..++++++.+.|++.+...+ .++.++++.+..+.. ..+. +++.+.. ....+|+++...
T Consensus 260 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~ 339 (357)
T 3lws_A 260 QYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGE 339 (357)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGG
T ss_pred HHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhh
Confidence 567788899999999843333 355677777766542 2222 2222221 123788887644
Q ss_pred CCHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIEN 446 (476)
Q Consensus 431 ~T~edid~~~~~l~~~ 446 (476)
.+.++++..++.|.++
T Consensus 340 ~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 340 LDQQTRDAGFARLRQA 355 (357)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 5788888888887664
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-19 Score=194.18 Aligned_cols=294 Identities=12% Similarity=0.067 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC-C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS-G 217 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~-g 217 (476)
....++.+.+|+++|.+. ..++++|+|.||..++.+... |||.|+++++.|.|+..++++.|++++.++.+.+ .
T Consensus 195 g~i~eaE~~lA~~fGa~~---a~~v~nGts~An~~ai~al~~--pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~ 269 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR---SYMVTNGTSTANKIVGMYSAP--AGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAY 269 (715)
T ss_dssp THHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHCC--TTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTT
T ss_pred HHHHHHHHHHHHHhCCCC---ceEECcHHHHHHHHHHHHhCC--CCCEEEECCCccHHHHHHHHHcCCEEEEEecccccc
Confidence 445567777899999974 255566668999998888876 9999999999999999999999999999987532 2
Q ss_pred ----cc-----CHHHHHHHHHcC--CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc--c
Q 011842 218 ----EI-----DCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM--P 284 (476)
Q Consensus 218 ----~~-----D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~--~ 284 (476)
.+ |+++|+++|.++ +++|.+++++++ |++|.+.|+++|+++|+++ ++++|+||++++. +
T Consensus 270 gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~-------~livDEAH~~~~~f~~ 341 (715)
T 3n75_A 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK-------SIHFDSAWVPYTNFSP 341 (715)
T ss_dssp CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCS-------EEEEECTTCTTGGGSG
T ss_pred ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcC-------cEEEccccccccccCC
Confidence 24 899999999865 345667888888 8999999999999999643 4799999986542 2
Q ss_pred ccccCCCCCCcccccEE---EEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 285 FVKKAPKVSFKKPIGSV---SVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 285 ~~~~~~~~~~~~~~Dsi---~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
.......+.....+|.+ +.|+||+++++.++|+++++++. ...+.....++.+ .|.+.....++-++++.
T Consensus 342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~S------TSpsy~~~AsldaA~~~ 415 (715)
T 3n75_A 342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTT------TSPHYGIVASTETAAAM 415 (715)
T ss_dssp GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSC------SSCCHHHHHHHHHHHHH
T ss_pred ccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcC------CCchHHHHHHHHHHHHH
Confidence 22111112221125654 89999999998899999998752 1112111122211 12221222233344555
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcC-------CeEeecC------------------------------CeeEEEEe
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAG-------ISAMLNE------------------------------LSSTVVFE 403 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g-------~~~~~~~------------------------------~~~iv~f~ 403 (476)
+....-+++++++.+++++|++.|++.+ +..+.++ .+- +.+.
T Consensus 416 ~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~K-l~i~ 494 (715)
T 3n75_A 416 MKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK-VTLL 494 (715)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTE-EEEE
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeE-EEEE
Confidence 4322235688999999999999998763 1221111 001 1122
Q ss_pred cCC------------c----HHHhhceeec---ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 404 RPQ------------D----EEFVRRWQLA---CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 404 ~~~------------~----~~~~~~~~l~---~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.++ + .+++++..+. +..+.+-+.+++..|++++++++++|.++.+.+.+
T Consensus 495 ~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~~ 562 (715)
T 3n75_A 495 TPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDL 562 (715)
T ss_dssp CSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 221 0 1122222332 23466777789999999999999999998765543
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=190.29 Aligned_cols=269 Identities=14% Similarity=0.130 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
....++++.+++++|.+ ..+++++||+|+..++. ... +++.|+++.+.|.+... .++..|++++.+|++
T Consensus 55 ~~~~~lr~~la~~~g~~----~~i~~~sGt~a~~~al~-~~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 127 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ----YGLAFSSGSATTATILQ-SLP--QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL 127 (393)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHH-TSC--SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH
T ss_pred hhHHHHHHHHHHHhCCC----cEEEECChHHHHHHHHH-HcC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC
Confidence 44556777888999886 26677777999999988 543 88999999999986544 345669999999876
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh----CCCCCceEEEEecCcccccccccccCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES----GFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~----g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
| ++|+++|++++ .+|++++++|++|.+.|+++|+++|++| |+ ++|+|++|+.+... ..
T Consensus 128 -----d-~~l~~~i~~~t---~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~-----~livD~a~~~~~~~--~~-- 189 (393)
T 1n8p_A 128 -----L-NDLPQLIKENT---KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDV-----ILVVDNTFLSPYIS--NP-- 189 (393)
T ss_dssp -----H-HHHHHHSCSSE---EEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTC-----EEEEECTTTHHHHC--CG--
T ss_pred -----h-HHHHHhcccCc---eEEEEECCCCCcceecCHHHHHHHHHHhCCCCCC-----EEEEeCCccccccC--CH--
Confidence 7 89999886544 4888889999999999999999999999 99 99999999866542 11
Q ss_pred CCCCcccccEEEEcCCCCCCCC-CCc-eeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCP-MPC-GVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p-~~~-G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
+. ..+|+++.|+||+++.+ +++ |+++++ +++++.+...... .+++. .....|+++..+ +.+.
T Consensus 190 -~~--~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~--------~g~~~--~~~~~~~~~~~l--~~~~ 254 (393)
T 1n8p_A 190 -LN--FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA--------IGAIP--SPFDAWLTHRGL--KTLH 254 (393)
T ss_dssp -GG--GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--------HCCCC--CHHHHHHHHHHH--TTHH
T ss_pred -HH--cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh--------cCCCC--CHHHHHHHHhcc--chHH
Confidence 11 13899999999999843 236 888886 4555544321111 11221 134444444433 4467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-eE-e-ec---------------C--C-eeEEEEecCCc----HHHhhceee-----c
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGI-SA-M-LN---------------E--L-SSTVVFERPQD----EEFVRRWQL-----A 417 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~-~~-~-~~---------------~--~-~~iv~f~~~~~----~~~~~~~~l-----~ 417 (476)
..+++..++++.+.+.|++.+. .. + .+ + . .+++.|..++. ..+...+.+ +
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s 334 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAES 334 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCC
Confidence 7778888888999999988754 21 2 11 1 2 56788877642 122222210 0
Q ss_pred --------------c--------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 418 --------------C--------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 418 --------------~--------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
. ..+.+|+++...+|+++|+.+.++|+++.
T Consensus 335 ~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 335 LGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp CCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 0 02689999999999999999999998753
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=183.77 Aligned_cols=294 Identities=11% Similarity=-0.015 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRM------ 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~------ 206 (476)
+...++.++++++++.+.+ ++++|+||++|+..++.+++.. .+++.|++.++.|+.+...+..++.
T Consensus 72 ~~~~~l~~~la~~~~~~~~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 149 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTF--RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRE 149 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------
T ss_pred HHHHHHHHHHHHhCCCCCC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccc
Confidence 6777888999999987654 5999999999999999988753 3467888888877665543333322
Q ss_pred ---------eEEEEeCCCC---CccCHHHHHHHHHcCC-CCcEEEEEeeCCC-ccccccC----HHHHHHHHHHhCCCCC
Q 011842 207 ---------ECVKVDCLIS---GEIDCADFKAKLLQNK-DKPAIINVNIGTT-VKGAVDD----LDLVIQTLEESGFTQD 268 (476)
Q Consensus 207 ---------~v~~v~~~~~---g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt-~tG~id~----l~~I~~ia~~~g~~~~ 268 (476)
++..+|.+.. +..|+++|+++|++.. +.+.+|+++...+ ++|.+.+ +++|.++|++||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~--- 226 (430)
T 3i4j_A 150 LYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGI--- 226 (430)
T ss_dssp ------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTC---
T ss_pred ccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCC---
Confidence 3444554432 4568899999997532 2334666666567 8888777 9999999999999
Q ss_pred ceEEEEecCcccccccccccCCCCCCc-c-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc-cccCCCCCcccC
Q 011842 269 RFYIHCDGALFGLMMPFVKKAPKVSFK-K-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV-EYLASRDATIMG 344 (476)
Q Consensus 269 ~~~lhvD~a~~g~~~~~~~~~~~~~~~-~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~ 344 (476)
++|+|++|.++.... ... ..... . ..|.++++ |.++.+ +++|++++++++++.+.... .+... .++.
T Consensus 227 --~li~DEv~~~~~~~g-~~~-~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~--~t~~- 297 (430)
T 3i4j_A 227 --IFIADEVMSGMGRCG-SPL-ALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG--FTYA- 297 (430)
T ss_dssp --EEEEECTTTTTTTTS-SSS-GGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCC--CTTT-
T ss_pred --EEEEechhhCCCccc-chh-hhhhhcCCCCcEEEEc--ccccCCccccEEEEECHHHHHHHhccCCccccc--CCCC-
Confidence 999999998653221 110 01111 1 25677654 988888 99999999988776664321 11111 1111
Q ss_pred CCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEecCCc------------H
Q 011842 345 SRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFERPQD------------E 408 (476)
Q Consensus 345 sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~~~~------------~ 408 (476)
..++.+.+++..+..-.-++.+++..++.+++++.|++ .+.....++..+++.+..++. .
T Consensus 298 ----~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 3i4j_A 298 ----GHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIAS 373 (430)
T ss_dssp ----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHH
T ss_pred ----CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHH
Confidence 12344444444432111134556666666666666655 343333333344444443210 1
Q ss_pred HHh-----hceee-cc-------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 409 EFV-----RRWQL-AC-------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 409 ~~~-----~~~~l-~~-------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++. ++..+ +. .++.+|++++..+|+++|++++++|+++.++.
T Consensus 374 ~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 374 RIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp HHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 221 23333 22 25789998888899999999999999988754
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=188.91 Aligned_cols=292 Identities=15% Similarity=0.158 Sum_probs=182.4
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--CCCcE---EEecCCCc-hHHHHHHHHcCCeEEEEeCC--
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--FPDGI---LYASRESH-YSVFKAARMYRMECVKVDCL-- 214 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~---Vl~s~~~H-~S~~~~~~~~G~~v~~v~~~-- 214 (476)
++++++++++|.+ .+++|+|||+|+..++.+++.. .||+. |+++ ..| .++..++...|++++.++.+
T Consensus 80 ~l~~~la~~~~~~----~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 154 (467)
T 1ax4_A 80 DLKDKAKELFNYD----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEKA 154 (467)
T ss_dssp HHHHHHHHHHCCC----EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGGG
T ss_pred HHHHHHHHHcCCC----cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccchhhHHHhccCCceeccccccc
Confidence 4455667777764 3999999999999999988652 16776 7777 555 55577788889988876542
Q ss_pred --------CCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCcc-ccc---cCHHHHHHHHHHhCCCCCceEEEEecCccc-
Q 011842 215 --------ISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVK-GAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFG- 280 (476)
Q Consensus 215 --------~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~t-G~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g- 280 (476)
.++.+|+++|+++|++.+ .++.+|+++.+++++ |.+ +++++|+++|++||+ |+|+|++++.
T Consensus 155 ~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi-----~li~De~~~~~ 229 (467)
T 1ax4_A 155 FDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI-----FVVMDSARFCE 229 (467)
T ss_dssp GCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-----CEEEECTTHHH
T ss_pred ccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCC-----EEEEEchhhhh
Confidence 146799999999998632 234588888889999 665 568899999999999 9999999753
Q ss_pred ccc-c-----ccccCCCCCCc----ccccEEEEcCCCCCCCCCCceeEEee-h-hhhhhhcCCccccCCCCCcccCCCCC
Q 011842 281 LMM-P-----FVKKAPKVSFK----KPIGSVSVSGHKFVGCPMPCGVQITR-M-EHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 281 ~~~-~-----~~~~~~~~~~~----~~~Dsi~~s~hK~l~~p~~~G~l~~~-~-~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
+.+ . .....+..+.. ..+|++++++||+++.|.| |+++.+ + ++++.+.....+..+ ....++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~--~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEG--FVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTC--STTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccccc--ccccCCccc
Confidence 111 0 00000000111 2378999999999986633 666666 4 555443211111110 001122221
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-------cCC----cHHHhh-----
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-------RPQ----DEEFVR----- 412 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-------~~~----~~~~~~----- 412 (476)
.....+..++.... + ++.+++..++++++.+.|++.++....+..+..+.+. .+. ..++.+
T Consensus 307 ~~~~a~~~~l~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 383 (467)
T 1ax4_A 307 RDMAAMVQGLEEGT-E--EEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLE 383 (467)
T ss_dssp HHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh-h--hhHHHHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHh
Confidence 11112222343321 1 2345555677888999998866654444455666666 321 122222
Q ss_pred -ceeecc------------c------CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Q 011842 413 -RWQLAC------------Q------GNIAHVVVMPN-VTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 413 -~~~l~~------------~------~~~lRv~~~~~-~T~edid~~~~~l~~~~~~~ 450 (476)
+..+.. . .+.+|+++... +|++||+++++.|+++.++.
T Consensus 384 ~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 384 SGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp HCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 222211 1 26899988744 89999999999999988764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=190.70 Aligned_cols=285 Identities=15% Similarity=0.078 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHH--HHH--cCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKA--ARM--YRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~--~~~--~G~~v~~v~~ 213 (476)
.++...++++++++|.+. ..+++++||+||..++.+++. ||+.|+++.++|.+ +... ... .+..++.++.
T Consensus 91 ~~e~~a~~~la~~~g~~~---~~v~~~sGs~a~~~a~~~~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 165 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEF---ANVQPHSGAQANAAVLHALMS--PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV 165 (447)
T ss_dssp HHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHCC--TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCc---eEEEeCCHHHHHHHHHHHhcC--CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc
Confidence 344444499999999874 133388999999999988876 99999999999866 2111 112 2445666776
Q ss_pred C-CCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 214 L-ISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 214 ~-~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+ +++.+|+++|++++.+ +++ +|+++.+.++++. ++++|.++|++||+ ++|+|++|+.+........
T Consensus 166 ~~~~~~~d~~~l~~~i~~~~~~---~i~~~~~~~~~~~--~l~~i~~l~~~~g~-----lli~Dea~~~g~~~~g~~~-- 233 (447)
T 3h7f_A 166 DPATHLIDMDAVRATALEFRPK---VIIAGWSAYPRVL--DFAAFRSIADEVGA-----KLLVDMAHFAGLVAAGLHP-- 233 (447)
T ss_dssp CTTTCSCCHHHHHHHHHHHCCS---EEEEECSSCCSCC--CHHHHHHHHHHHTC-----EEEEECTTTHHHHHTTSSC--
T ss_pred CcccCCcCHHHHHHHHHhcCCe---EEEEcCCCCCCcc--CHHHHHHHHHHcCC-----EEEEECCchhhhhcCCCCC--
Confidence 6 4678999999999965 343 6667666666554 99999999999999 9999999864332211111
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC-ccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN-VEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~-~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.....+|+++.++||++++ ++.|+++.++++.+.+... ..+ ..++.......++.+++.......+++..
T Consensus 234 -~~~~~~di~~~s~sK~l~G-~~gG~i~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ 304 (447)
T 3h7f_A 234 -SPVPHADVVSTTVHKTLGG-GRSGLIVGKQQYAKAINSAVFPG-------QQGGPLMHVIAGKAVALKIAATPEFADRQ 304 (447)
T ss_dssp -CSTTTCSEEEEESSGGGCC-CSCEEEEECGGGHHHHHHHHTTT-------TCSSCCHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred -CCCCCCcEEEecCCcCCCC-CCeEEEEECHHHHHHHhhhcCCc-------ccCCccHHHHHHHHHHHHHhhCHHHHHHH
Confidence 1113479999999999975 4569999988765544221 111 12222222234444555554455778899
Q ss_pred HHHHHHHHHHHHHHHhc-----CCeEeec-CCeeEEEEecCC---c-HH---Hh-h-ceeec-----------ccCCEEE
Q 011842 371 QKCLRNAHYLKDRLLDA-----GISAMLN-ELSSTVVFERPQ---D-EE---FV-R-RWQLA-----------CQGNIAH 424 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~-----g~~~~~~-~~~~iv~f~~~~---~-~~---~~-~-~~~l~-----------~~~~~lR 424 (476)
++..++++++.+.|++. |+..+.. ..++++.+.... + .. .. + ++.+. ...+.+|
T Consensus 305 ~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lR 384 (447)
T 3h7f_A 305 RRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLR 384 (447)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCcee
Confidence 99999999999999988 7765442 345555555432 1 11 11 1 33322 1235688
Q ss_pred EEEcC----CCCHHHHHHHHHHHHHHHHH
Q 011842 425 VVVMP----NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 425 v~~~~----~~T~edid~~~~~l~~~~~~ 449 (476)
+++.. ..|++||+++++.|.++.+.
T Consensus 385 ig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 385 IGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp EECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 87543 37899999999999988754
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-19 Score=181.64 Aligned_cols=290 Identities=13% Similarity=0.024 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHc-CCCCCcccEEEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCc-hHHHHHHHHcCCe--------
Q 011842 139 QFEVGVLDWFARLW-ELENNEYWGYITNCGTEGNLHGILVGREV-FPDGILYASRESH-YSVFKAARMYRME-------- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~-g~~~~~~~g~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H-~S~~~~~~~~G~~-------- 207 (476)
....++++.+++++ | + .+..+++|+||++|+..++..++.. .++ .|++.+++| .++..++...|.+
T Consensus 84 ~~~~~l~~~la~~~~~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~ 160 (426)
T 1sff_A 84 EPYLELCEIMNQKVPG-D-FAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMG 160 (426)
T ss_dssp HHHHHHHHHHHHHSSC-S-SCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred HHHHHHHHHHHHhCCc-c-cccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccC
Confidence 44556667777877 5 2 2245999999999999998854322 255 566655555 4555666666653
Q ss_pred -----EEEEeCCC-----CCccCHHHHHHHHHcC--CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceE
Q 011842 208 -----CVKVDCLI-----SGEIDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFY 271 (476)
Q Consensus 208 -----v~~v~~~~-----~g~~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~ 271 (476)
++.+|.+. ++.+|+++|++++++. ..++.+|+++...+.+|.+.+ +++|.++|++||+ +
T Consensus 161 ~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~-----~ 235 (426)
T 1sff_A 161 LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-----M 235 (426)
T ss_dssp CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-----E
T ss_pred CCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCC-----E
Confidence 77777753 2358999999999742 123446666543334997777 9999999999999 9
Q ss_pred EEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChh
Q 011842 272 IHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHA 350 (476)
Q Consensus 272 lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~ 350 (476)
+++|++|+++.... ... .++... .+|++ +++|+++.++++|++++++++++.+.... + ..+ .+.+...
T Consensus 236 li~De~~~~~~~~g-~~~-~~~~~~~~~di~--s~sK~~~~GlriG~~~~~~~~~~~l~~~~-~----~~~--~~~~~~~ 304 (426)
T 1sff_A 236 LIADEVQSGAGRTG-TLF-AMEQMGVAPDLT--TFAKSIAGGFPLAGVTGRAEVMDAVAPGG-L----GGT--YAGNPIA 304 (426)
T ss_dssp EEEECTTTTTTTTS-SSS-GGGGTTSCCSEE--EECGGGGTSSCCEEEEEEHHHHTTSCTTS-B----CCS--SSSCHHH
T ss_pred EEEechhhccCccc-chh-hhhhcCCCCCEE--EEcccccCCCceEEEEEcHHHHhhhccCC-c----CcC--CCCCHHH
Confidence 99999998643211 110 011111 26766 45699987788999999988766553210 1 011 1111122
Q ss_pred HHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecC--------C---cHHHh----
Q 011842 351 PIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERP--------Q---DEEFV---- 411 (476)
Q Consensus 351 ~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~--------~---~~~~~---- 411 (476)
...+.++++.+..+ +..++..++++++.++|++. +......+..+++.+..+ . ..++.
T Consensus 305 ~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 381 (426)
T 1sff_A 305 CVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARAR 381 (426)
T ss_dssp HHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHH
Confidence 23333444444222 35667777888888888764 322222233456665542 1 12222
Q ss_pred -hceeec-cc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 412 -RRWQLA-CQ--GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 412 -~~~~l~-~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+++.+. .. .+.+|++++..+|+++|++++++|+++.+++
T Consensus 382 ~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 382 DKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp HTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 233332 22 4789999988999999999999999987654
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=188.52 Aligned_cols=267 Identities=13% Similarity=0.099 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~~~ 216 (476)
..++++.+++++|.+ ..+++++|++|+..++. ... +++.|+++++.|.+.... ++..|++++.++.+
T Consensus 69 ~~~l~~~la~~~g~~----~~i~~~sG~~ai~~~~~-l~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 139 (403)
T 3cog_A 69 RNCLEKAVAALDGAK----YCLAFASGLAATVTITH-LLK--AGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-- 139 (403)
T ss_dssp HHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHT-TSC--TTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred HHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHH-HhC--CCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC--
Confidence 344555677777875 25666677899888877 443 899999999999875443 45679999999986
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC-CCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG-FTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g-~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|+++|+++|++++ .+|++++++|++|.+.|+++|+++|++|| + ++++|++|+.+... . .++
T Consensus 140 ---d~~~l~~~i~~~t---~~v~~~~p~nptG~~~~l~~i~~la~~~g~~-----~livD~~~~~~~~~--~---~~~-- 201 (403)
T 3cog_A 140 ---KIKLLEAAITPET---KLVWIETPTNPTQKVIDIEGCAHIVHKHGDI-----ILVVDNTFMSPYFQ--R---PLA-- 201 (403)
T ss_dssp ---SHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHTSSSCC-----EEEEECTTTCTTTC--C---TTT--
T ss_pred ---CHHHHHHhcCcCC---eEEEEECCCCCCCeeeCHHHHHHHHHHcCCC-----EEEEECCCcccccC--C---ccc--
Confidence 8999999987654 48888999999999999999999999999 9 99999999876531 1 122
Q ss_pred ccccEEEEcCCCCCCCCCC--ceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMP--CGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~--~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
..+|+++.|+||++++|.+ +|+++++ +++.+.+....... ..+ ...+.+|++++.+ +.+..++++
T Consensus 202 ~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~-------g~~---~~~~~~~~~~~~l--~~l~~r~~~ 269 (403)
T 3cog_A 202 LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL-------GAV---PSPIDCYLCNRGL--KTLHVRMEK 269 (403)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH-------CCC---CCHHHHHHHHHHH--TTHHHHHHH
T ss_pred cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc-------CCC---CCHHHHHHHHhhh--hHHHHHHHH
Confidence 2489999999999997764 6999986 45555443211111 111 1245666666544 345666777
Q ss_pred HHHHHHHHHHHHHhcCCeE--------------eecC----CeeEEEEecCCc-H---HHhhceee---c----------
Q 011842 373 CLRNAHYLKDRLLDAGISA--------------MLNE----LSSTVVFERPQD-E---EFVRRWQL---A---------- 417 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~--------------~~~~----~~~iv~f~~~~~-~---~~~~~~~l---~---------- 417 (476)
..+++..+.+.|++.+... +..+ ..+++.|..++. . .+.+...+ .
T Consensus 270 ~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~ 349 (403)
T 3cog_A 270 HFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLA 349 (403)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceee
Confidence 7778877888877653211 1111 256777776532 1 22322221 0
Q ss_pred --c----------------c--CCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 418 --C----------------Q--GNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 418 --~----------------~--~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+ . .+.+|+++...+++++|++|.++|+++
T Consensus 350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 0 1 368999999999999999888888765
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=190.48 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHcCCCCCcccEEE---cCCchhHHHHHHHHHHhhCCCcEEEecC-CCchHHHHH----------HHHcCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYI---TNCGTEGNLHGILVGREVFPDGILYASR-ESHYSVFKA----------ARMYRM 206 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~---t~ggt~An~~al~aa~~~~p~~~Vl~s~-~~H~S~~~~----------~~~~G~ 206 (476)
.+++.+.+++++|.+. .++ |+|||+||..++.+... ||+.|++++ +.|..+... ++..|+
T Consensus 61 ~~~Le~~lA~l~g~e~----alv~p~~~sGt~Ai~~al~all~--~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~ 134 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA----ALVRPQIISGTHAISTVLFGILR--PDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHI 134 (409)
T ss_dssp HHHHHHHHHHHHTCSE----EEEETTSCSHHHHHHHHHHHHCC--TTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTC
T ss_pred HHHHHHHHHHHhCCCc----EEEECCCccHHHHHHHHHHHhcC--CCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCC
Confidence 4455667889999864 455 89999999999888765 999999998 888877643 456799
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCccc
Q 011842 207 ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNI----GTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 207 ~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~----gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g 280 (476)
+++.++++++|.+|+++|++++++++ .+|++++ +++++|.+.|+++|+++|++ ||+ ++|+|++|+.
T Consensus 135 ~~~~v~~~~~g~~d~e~l~~ai~~~t---klV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~-----~livD~a~~~ 206 (409)
T 3jzl_A 135 GYSSVPLLENGDVDFPRIAKKMTPKT---KMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEV-----IVFVDNCYGE 206 (409)
T ss_dssp EEEECCCCTTSCCCHHHHHHHCCTTE---EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC-----EEEEECTTCT
T ss_pred EEEEeCCCCCCCcCHHHHHHhccCCC---eEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCC-----EEEEeCCccc
Confidence 99999998889999999999997654 4888888 99999999999999999999 999 9999999986
Q ss_pred ccccccccCCCCCCcccccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcC--CccccCCCCCcccCCCCChhHHHHHH
Q 011842 281 LMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSS--NVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
++... .. . ...+|+++.|+||+++++. ..|+++.++++++.+.. ...++... .+..... .|+
T Consensus 207 ~~~~~-~p---~--~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~----~g~~~~~----~~~ 272 (409)
T 3jzl_A 207 FVEYQ-EP---P--EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGRE----AGASLYS----LLE 272 (409)
T ss_dssp TTSSC-CS---G--GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGG----CCCCTTC----HHH
T ss_pred ccccC-Cc---c--ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccccc----ccccHHH----HHH
Confidence 55321 10 1 1248999999999998653 35888888877766533 11222110 1111111 123
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-----EEEEecCC
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-----TVVFERPQ 406 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-----iv~f~~~~ 406 (476)
+++. ......++++..++++++.+.|++.|+.+ .+..+. ++.|..++
T Consensus 273 ~l~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i~l~~ 324 (409)
T 3jzl_A 273 MYQG--FFLAPHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSVSFHN 324 (409)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEEECSC
T ss_pred HHHH--HhhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEEEeCC
Confidence 3332 24456788899999999999999999865 433333 66677654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-19 Score=182.42 Aligned_cols=287 Identities=11% Similarity=0.026 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHHHHHcC-CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCe-EEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWE-LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRME-CVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g-~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~-v~~v~~ 213 (476)
+..++++++.+++. .| ++ ...+++|+|+++++..++. +.. |++.|+++.++|.++...++..|++ ++.+|+
T Consensus 76 g~~~lr~~la~~l~--~g~~~--~~~v~~~~G~~~al~~~~~-~~~--~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 76 GLPALRQKLSEDFY--RGFVD--AKEIFISDGAKVDLFRLLS-FFG--PNQTVAIQDPSYPAYLDIARLTGAKEIIALPC 148 (400)
T ss_dssp CCHHHHHHHHHTTS--TTSSC--GGGEEEESCHHHHHHHHHH-HHC--SSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCCC--HHHEEEccChHHHHHHHHH-HcC--CCCEEEECCCCcHHHHHHHHHcCCcceEeccc
Confidence 34567766555532 46 44 3469999999999887543 333 8899999999999999999999998 999998
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++++.++.+ +++. + ++.+|+++++.|+||.+.| +++|+++|++||+ ++++|++|+.+........+
T Consensus 149 ~~~~~~~~~-l~~~--~---~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~~~~~~~ 217 (400)
T 3asa_A 149 LQENAFFPE-FPED--T---HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEI-----LILFDAAYSTFISDPSLPKS 217 (400)
T ss_dssp CGGGTTCCC-CCTT--C---CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTGGGCCCTTSCSS
T ss_pred chhcCcccC-hhhc--c---CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEEchhhhhhcCCCCCCc
Confidence 754333321 2221 2 2347777889999999976 6778999999999 99999999865432111111
Q ss_pred CCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhh-------hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 291 KVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEH-------INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 291 ~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~-------~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
...... ..+++..+++|+++ .++++|++++++++ ++.+...... ...++.+ .+.+.++...
T Consensus 218 ~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~a~~~~ 288 (400)
T 3asa_A 218 IFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLS------TTFNGAS---IPAQEAGVAG 288 (400)
T ss_dssp GGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHH------HHCCCCC---HHHHHHHHHH
T ss_pred hhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhc------cCccCCC---hHHHHHHHHH
Confidence 111111 13577899999996 77889999998876 3322110000 0011122 2333333333
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-cCC---cHH----Hh-h-ceeecc-------cCCEE
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-RPQ---DEE----FV-R-RWQLAC-------QGNIA 423 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-~~~---~~~----~~-~-~~~l~~-------~~~~l 423 (476)
+....+++..++..++++++.+.|++.|+....++.++++.+. .+. ..+ +. + ++.+.. ..+.+
T Consensus 289 l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 289 LSILPQLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 3222466777888889999999999988755444456677777 552 112 22 1 343321 24679
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
|+++ .+|+++|+++++.|+++.++..
T Consensus 369 Ris~--~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 369 RFSS--LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp EEEC--CSCHHHHHHHHHHHHC------
T ss_pred EEEe--eCCHHHHHHHHHHHHHHHHhhh
Confidence 9984 5789999999999998876654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=189.56 Aligned_cols=237 Identities=11% Similarity=0.081 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEE---cCCchhHHHHHHHHHHhhCCCcEEEecC-CCchHHH-----------HHHHHcC
Q 011842 141 EVGVLDWFARLWELENNEYWGYI---TNCGTEGNLHGILVGREVFPDGILYASR-ESHYSVF-----------KAARMYR 205 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~---t~ggt~An~~al~aa~~~~p~~~Vl~s~-~~H~S~~-----------~~~~~~G 205 (476)
..++.+.+++++|.+. .++ ++|||+||..++.+... ||+.|++++ +.|.... ..++..|
T Consensus 75 ~~~Le~~lA~l~g~e~----alv~p~~~sGt~Ai~~al~all~--pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 148 (427)
T 3i16_A 75 RDSLDAVYARVFNTES----ALVRPHFVNGTHALGAALFGNLR--PGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG 148 (427)
T ss_dssp HHHHHHHHHHHHTCSE----EEEETTCCSHHHHHHHHHHHHCC--TTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT
T ss_pred HHHHHHHHHHHhCCcc----eEEeCCCccHHHHHHHHHHHHhC--CCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC
Confidence 4455567899999864 455 89999999999888765 999999998 8887665 3445679
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcc
Q 011842 206 MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNI----GTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALF 279 (476)
Q Consensus 206 ~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~----gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~ 279 (476)
++++.++++++|.+|+++|++++.+. .++.+|++++ +++++|.+.|+++|+++|++ ||+ +++||++|+
T Consensus 149 ~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~-----~livD~a~~ 222 (427)
T 3i16_A 149 INYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDI-----ICFVDNCYG 222 (427)
T ss_dssp CEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTS-----EEEEECTTT
T ss_pred CEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCC-----EEEEECCCc
Confidence 99999999888999999999999831 1234888887 89999999999999999999 999 999999998
Q ss_pred cccccccccCCCCCCcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcC--CccccCCCCCcccCCCCChhHHHHH
Q 011842 280 GLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSS--NVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
.+.+... .....+|+++.|+||+++++ ...|+++.++++++.+.. ....+. ...+.. .. ..|
T Consensus 223 ~~~~~~~------p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g-----~~~~~~-~~--~a~ 288 (427)
T 3i16_A 223 EFMDTKE------PTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIG-----GECGST-FG--VVR 288 (427)
T ss_dssp TTSSSSC------GGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTG-----GGCCCC-TT--CHH
T ss_pred cccccCC------ccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccC-----ccCCcc-HH--HHH
Confidence 6653210 01124899999999999853 456999999887766543 111111 011110 11 123
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-----EEEEecCC
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-----TVVFERPQ 406 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-----iv~f~~~~ 406 (476)
.+++. ...+..++++..+++.++.+.|++.|+.+ .+..+. ++.|...+
T Consensus 289 ~~l~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~~~~~~~~i~~i~l~~ 341 (427)
T 3i16_A 289 SMYQG--LFLAPHISMEALKGAILCSRIMELAGFEV-MPKYDEKRSDIIQSIKFND 341 (427)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCEEEECSS
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCCCCCCccEEEEEEECC
Confidence 33332 34557788999999999999999999865 443444 77777754
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=184.33 Aligned_cols=281 Identities=12% Similarity=0.029 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-----CC-cEEEecCCCc-hHHHHHHHHcCCe----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-----PD-GILYASRESH-YSVFKAARMYRME---- 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-----p~-~~Vl~s~~~H-~S~~~~~~~~G~~---- 207 (476)
+...++++++++++|.+ .+++|+||++|+..++.+++... ++ +.|++.+++| .+...+....|.+
T Consensus 99 ~~~~~l~~~la~~~g~~----~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~ 174 (420)
T 2pb2_A 99 EPALRLGRKLIDATFAE----RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSD 174 (420)
T ss_dssp HHHHHHHHHHHHHSSCS----EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHhhCCCC----eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccc
Confidence 66777888899988853 39999999999999999887521 44 4676666654 4445555555653
Q ss_pred --------EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc----ccCHHHHHHHHHHhCCCCCceEEEEe
Q 011842 208 --------CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGA----VDDLDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 208 --------v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~----id~l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
+..+|.+ |+++|+++|+++ +.+|+++.+.++.|. .+++++|.++|++||+ ++++|
T Consensus 175 ~~~p~~~~~~~~~~~-----d~~~le~~i~~~---~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi-----~lI~D 241 (420)
T 2pb2_A 175 GFGPKPADIIHVPFN-----DLHAVKAVMDDH---TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA-----LLVFD 241 (420)
T ss_dssp TSSSCCSCEEEECTT-----CHHHHHHHCCTT---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTC-----EEEEE
T ss_pred cCCCCCCCeEEecCC-----CHHHHHHHhccC---ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCC-----EEEEE
Confidence 5666653 899999998753 347777766666665 3689999999999999 99999
Q ss_pred cCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 276 GALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 276 ~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
++|.++... ..... ++... ..|+++ ++|++++++++|++++++++++.+.... ...++.+ +.......
T Consensus 242 ev~~g~~~~-g~~~~-~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~l~~~l~~~~-----~~~t~~~--~~~~~aa~ 310 (420)
T 2pb2_A 242 EVQCGMGRT-GDLFA-YMHYGVTPDILT--SAKALGGGFPVSAMLTTQEIASAFHVGS-----HGSTYGG--NPLACAVA 310 (420)
T ss_dssp CTTTTTTTT-SSSSH-HHHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTCC---------CCEECC--CHHHHHHH
T ss_pred cCCcCcccC-CcHHH-HHhcCCCCCeEE--ecccccCCCceEEEEEhHHHHHhhcCCC-----cCcccCc--CHHHHHHH
Confidence 999754321 11100 01111 267775 4699998899999999988765543210 0112221 11222233
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC-----cHHHh-----hceeec-cc
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ-----DEEFV-----RRWQLA-CQ 419 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~-----~~~~~-----~~~~l~-~~ 419 (476)
.++++.+.. ++..++..+++++|.+.|++. +.....++..+++.+..+. ..++. +++.+. ..
T Consensus 311 ~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~ 387 (420)
T 2pb2_A 311 GAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG 387 (420)
T ss_dssp HHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC
Confidence 344444432 467788888999999998775 3222223334555555432 22232 233333 33
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.+.+|++++..+|++||++++++|+++.+++
T Consensus 388 ~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 388 ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999888899999999999999987654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-19 Score=182.92 Aligned_cols=293 Identities=13% Similarity=0.026 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCC-cEEEecCCCchHHHHHHHHcCCe---------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPD-GILYASRESHYSVFKAARMYRME--------- 207 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~-~~Vl~s~~~H~S~~~~~~~~G~~--------- 207 (476)
.++..+++++++++++...+ ...++|+||++|+..++.+++...++ .+|+.+...|.+...+..+.|..
T Consensus 85 ~~~~~~l~~~la~~~~~~~~-~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 163 (439)
T 3dxv_A 85 NAPAVTLAERLLASFPGEGT-HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD 163 (439)
T ss_dssp EHHHHHHHHHHHHTTTCTTT-EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred CHHHHHHHHHHHHhCCCCCC-CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence 47788899999999865431 25999999999999999987643344 45555555555555555444432
Q ss_pred -----EEEEeCCCCCcc-----CHHHHHHHHH-cCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEE
Q 011842 208 -----CVKVDCLISGEI-----DCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYI 272 (476)
Q Consensus 208 -----v~~v~~~~~g~~-----D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~l 272 (476)
+..+|.+..+.- |+++|+++|. ..+..+.+|+++...+++|.+.| +++|.++|++||+ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~l 238 (439)
T 3dxv_A 164 GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI-----LV 238 (439)
T ss_dssp CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-----EE
T ss_pred CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC-----EE
Confidence 233444322222 7999999994 33344567777777888999988 9999999999999 99
Q ss_pred EEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 273 HCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 273 hvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
++|++|+++.... ... ..+... ..|.++ +.|.+++++++|+++.++++++.+.... + ..++ . .+
T Consensus 239 i~DE~~~g~g~~g-~~~-~~~~~~~~~di~s--~sK~~~~G~riG~~~~~~~~~~~~~~~~-~----~~t~-~-----~~ 303 (439)
T 3dxv_A 239 VCDEVKVGLARSG-RLH-CFEHEGFVPDILV--LGKGLGGGLPLSAVIAPAEILDCASAFA-M----QTLH-G-----NP 303 (439)
T ss_dssp EEECTTTCTTTTS-SSS-GGGGTTCCCSEEE--ECGGGGTTSCCEEEEEEHHHHTSCSSSS-C----CTTT-T-----CH
T ss_pred EEeccccCCCcCc-hhh-HHHhcCCCCCEEE--EcchhcCCcceEEEEECHHHHhhhcCCC-c----CCCc-c-----cH
Confidence 9999998642211 110 011111 257664 4598888889999999988776553221 0 1112 1 23
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEec--------CCc---HHH-----h
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFER--------PQD---EEF-----V 411 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~--------~~~---~~~-----~ 411 (476)
+.+.+++..+....-++.+++..++.+++++.|++. +.....++..+++.+.. +.. ..+ .
T Consensus 304 ~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (439)
T 3dxv_A 304 ISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQ 383 (439)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHH
Confidence 444444443321111445666777777777777663 43333333344444433 221 112 1
Q ss_pred hceeec-cc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 412 RRWQLA-CQ--GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 412 ~~~~l~-~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++..+. .. ++.+|++++..+|+++|++++++|+++.+++.
T Consensus 384 ~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 384 LGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp HTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred CCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 233332 22 37899999999999999999999999887654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=179.18 Aligned_cols=262 Identities=11% Similarity=0.049 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHcC---CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 138 RQFEVGVLDWFARLWE---LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g---~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
.++++++ +++++ +++ ..+++|+|+++++..++.++ |+.|+++ ++|.++...++..|++++.+|++
T Consensus 59 ~~lr~~l----a~~~~~~~~~~--~~v~~~~G~~~al~~~~~~~-----gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~ 126 (335)
T 1uu1_A 59 EELIEKI----LSYLDTDFLSK--NNVSVGNGADEIIYVMMLMF-----DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT 126 (335)
T ss_dssp HHHHHHH----HHHHTCSSCCG--GGEEEESSHHHHHHHHHHHS-----SEEEECS-SSCHHHHHHHHHHTCEEEECCCC
T ss_pred HHHHHHH----HHHcCCCCCCH--HHEEEcCChHHHHHHHHHHh-----CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC
Confidence 3555554 44555 543 35999999999999888765 7899999 99999999999999999999998
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+++.+|+++| ++ +.+|++++++|++|.+.|.++|.++++.+| ++++|++|+.+... +.+..
T Consensus 127 ~~~~~d~~~l-----~~---~~~v~l~~p~nptG~~~~~~~l~~l~~~~~------~li~De~~~~~~~~-----~~~~~ 187 (335)
T 1uu1_A 127 KDLRIPEVNV-----GE---GDVVFIPNPNNPTGHVFEREEIERILKTGA------FVALDEAYYEFHGE-----SYVDF 187 (335)
T ss_dssp TTSCCCCCCC-----CT---TEEEEEESSCTTTCCCCCHHHHHHHHHTTC------EEEEECTTHHHHCC-----CCGGG
T ss_pred CCCCCCHHHc-----CC---CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC------EEEEECcchhhcch-----hHHHH
Confidence 7778888877 23 347777899999999999999999999873 79999999854321 11111
Q ss_pred -c-ccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh-hcHHHHH
Q 011842 295 -K-KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY-KGFQKEV 370 (476)
Q Consensus 295 -~-~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~-~g~~~~~ 370 (476)
. ...+++..+++|+++ .++++|++++++++++.+...... .+. ..+.++++...+.. +.+++..
T Consensus 188 ~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~---~~~~~~~~~~~l~~~~~~~~~~ 255 (335)
T 1uu1_A 188 LKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP---------FNV---SYVSQMFAKVALDHREIFEERT 255 (335)
T ss_dssp GGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT---------TCS---CHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC---------CCc---CHHHHHHHHHHhCCHHHHHHHH
Confidence 1 125688899999997 667899999988776655321110 122 23444444444322 3567788
Q ss_pred HHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC--cHHHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 371 QKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ--DEEFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~--~~~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
++..++++++.+.|++.|+. +.++.++++.+..+. ..++. +++.+....+.+|+++. +.+|+++++++|
T Consensus 256 ~~~~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l 331 (335)
T 1uu1_A 256 KFIVEERERMKSALREMGYR-ITDSRGNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILREL 331 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-BCCCCSSEEEEECCTHHHHHHHHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcE-EcCCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHH
Confidence 88899999999999988764 345556677777664 22232 23334334578999874 478899999998
Q ss_pred HHH
Q 011842 444 IEN 446 (476)
Q Consensus 444 ~~~ 446 (476)
+++
T Consensus 332 ~~~ 334 (335)
T 1uu1_A 332 EVF 334 (335)
T ss_dssp HCC
T ss_pred Hhh
Confidence 753
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=188.33 Aligned_cols=267 Identities=12% Similarity=0.080 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~ 214 (476)
...+++++++++++|.+ ..+++++|++|+..++. .. .||+.|+++++.|.++... ++..|++++.++.+
T Consensus 133 ~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-LI--KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-TS--CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-Hh--CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 47888999999999975 27888899998876654 32 4899999999999988754 56679999999875
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|.+++ .+|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+... . .++
T Consensus 206 -----d~~~l~~~i~~~t---k~v~l~~p~NptG~v~~l~~i~~la~~~gi-----~livDea~~~g~~~--~---~~~- 266 (464)
T 1ibj_A 206 -----KLDEVAAAIGPQT---KLVWLESPTNPRQQISDIRKISEMAHAQGA-----LVLVDNSIMSPVLS--R---PLE- 266 (464)
T ss_dssp -----SHHHHHHHCCSSE---EEEEECSSCTTTCCCCCHHHHHHHHHTTTC-----EEEEECTTTCTTTC--C---GGG-
T ss_pred -----CHHHHHHHhccCc---eEEEEeCCCCCCCEeecHHHHHHHHHHcCC-----EEEEECCCcccccC--C---hhh-
Confidence 8999999987544 488899999999999999999999999999 99999999754321 0 012
Q ss_pred cccccEEEEcCCCCCCCCC--CceeEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCPM--PCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..+|+++.++||++++|. ++|++++++ ++.+.+.....+.. ++ ...+.+|+++..+ +.+..+++
T Consensus 267 -~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g-------~~---~~~~~~~a~~~al--~~~~~r~~ 333 (464)
T 1ibj_A 267 -LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEG-------SG---LAPFDCWLCLRGI--KTMALRIE 333 (464)
T ss_dssp -TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTT-------CB---CCHHHHHHHHHHH--TTHHHHHH
T ss_pred -cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcC-------CC---CCHHHHHHHHhch--hhHHHHHH
Confidence 237999999999998765 459999986 55555432111111 11 1245666666554 33444455
Q ss_pred HHHHHHHHHHHHHHhcC--------------CeEeecC----CeeEEEEecCCc---HHHhhcee-----ecc-------
Q 011842 372 KCLRNAHYLKDRLLDAG--------------ISAMLNE----LSSTVVFERPQD---EEFVRRWQ-----LAC------- 418 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g--------------~~~~~~~----~~~iv~f~~~~~---~~~~~~~~-----l~~------- 418 (476)
+..+++..+.+.|++.+ ...+..+ ..+++.|..++. ..+.+.+. +..
T Consensus 334 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~ 413 (464)
T 1ibj_A 334 KQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLI 413 (464)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceee
Confidence 55555555566665542 1111122 145788877532 12333221 100
Q ss_pred ---------------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 ---------------------QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ---------------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|+++.. ||+++++++|+++.+
T Consensus 414 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 414 SMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp ECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 02578988875 899999999988764
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=188.62 Aligned_cols=289 Identities=12% Similarity=0.112 Sum_probs=174.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC-----C----cEEEecCCCchH-HHHHHHHcCCeEEEE-
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP-----D----GILYASRESHYS-VFKAARMYRMECVKV- 211 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p-----~----~~Vl~s~~~H~S-~~~~~~~~G~~v~~v- 211 (476)
++++++++++|.+ .+++|+|||+||..++.+++. + | +.|+++ ..|+. +.......|+.++..
T Consensus 78 ~l~~~la~~~~~~----~v~~t~~gt~A~~~al~~~~~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~ 150 (467)
T 2oqx_A 78 ALAESVKNIFGYQ----YTIPTHQGRGAEQIYIPVLIK--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCTVRNVY 150 (467)
T ss_dssp HHHHHHHHHHCCS----EEEEEC--CCSHHHHHHHHHH--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCEEEECB
T ss_pred HHHHHHHHHhCcC----cEEEcCCcHHHHHHHHHHHhc--cccccCCCCccceEEec-ccccccchhhhhccCcceeecc
Confidence 4455677777764 399999999999999999876 4 5 777776 56744 344445566665443
Q ss_pred -----eCC----CCCccCHHHHHHHHHcCC-CCcEEEEEeeCCCcc-ccc---cCHHHHHHHHHHhCCCCCceEEEEecC
Q 011842 212 -----DCL----ISGEIDCADFKAKLLQNK-DKPAIINVNIGTTVK-GAV---DDLDLVIQTLEESGFTQDRFYIHCDGA 277 (476)
Q Consensus 212 -----~~~----~~g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~t-G~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a 277 (476)
+.+ .++.+|+++|+++|++.. .++.+|+++.+++++ |.+ +++++|+++|++||+ |+|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi-----~li~D~a 225 (467)
T 2oqx_A 151 IKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI-----PVVMDSA 225 (467)
T ss_dssp CTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC-----CEEEECT
T ss_pred ccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEch
Confidence 222 346799999999998521 123378788888887 665 568999999999999 9999988
Q ss_pred ccc-cccc------ccccCCCCCCc----ccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCcccc--CCCCCccc
Q 011842 278 LFG-LMMP------FVKKAPKVSFK----KPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYL--ASRDATIM 343 (476)
Q Consensus 278 ~~g-~~~~------~~~~~~~~~~~----~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl--~~~~~~~~ 343 (476)
|+. ..+. ...+.....+. ..+|++++++||+++.|.+ |+++.+++ +++.+.....+. ... ....
T Consensus 226 ~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 303 (467)
T 2oqx_A 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEG-FPTY 303 (467)
T ss_dssp THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTS-SCCC
T ss_pred hhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCC-cccc
Confidence 755 2210 00011001111 2378889999999987644 67777766 332221111111 110 0001
Q ss_pred CCCCChhHHHHHHHHHHhChhcH-HHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC------CcHHH-----h
Q 011842 344 GSRNGHAPIFLWYTLNRKGYKGF-QKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP------QDEEF-----V 411 (476)
Q Consensus 344 ~sr~~~~~l~~~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~------~~~~~-----~ 411 (476)
++.. . ..+. ++...-.+.+ ++.+++..++++++.+.|++.++... +....++.+..+ +..++ .
T Consensus 304 ~~~~-~--~~~~-al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 378 (467)
T 2oqx_A 304 GGLE-G--GAME-RLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALA 378 (467)
T ss_dssp CCCC-H--HHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHH
T ss_pred cchh-h--hHHH-HHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHH
Confidence 1221 1 1111 1211001111 23455667888999999988876555 545566666542 11111 2
Q ss_pred h------ceeecc-c-----------------CCEEEEEEcCC-CCHHHHHHHHHHHHHHHHHH
Q 011842 412 R------RWQLAC-Q-----------------GNIAHVVVMPN-VTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 412 ~------~~~l~~-~-----------------~~~lRv~~~~~-~T~edid~~~~~l~~~~~~~ 450 (476)
+ +..+.. . .+.+|+++... +|+++|+++++.|+++.++.
T Consensus 379 ~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 379 CELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp HHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 2 222211 1 16899998888 99999999999999987653
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=178.98 Aligned_cols=291 Identities=10% Similarity=0.034 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh---C---CCcEEEecCCCchHHHHHHHHcCC-----
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV---F---PDGILYASRESHYSVFKAARMYRM----- 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~---~---p~~~Vl~s~~~H~S~~~~~~~~G~----- 206 (476)
.+...+++++++++++.+.+ ++||+|||+||..++.+++.. . +++.|++.+++|......+..++.
T Consensus 90 ~~~~~~la~~l~~~~~~~~~---v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 90 HEPAIKLAEKLNEWLGGEYV---IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp EHHHHHHHHHHHHHHTSCEE---EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred CHHHHHHHHHHHHhCCCCce---EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 37778889999999886532 899999999999999998843 3 567777777776544333333321
Q ss_pred --------eEEEEeCCCCC------------ccCHHHHHHHHH-cCCCCcEEEEEeeC-CCccccccC----HHHHHHHH
Q 011842 207 --------ECVKVDCLISG------------EIDCADFKAKLL-QNKDKPAIINVNIG-TTVKGAVDD----LDLVIQTL 260 (476)
Q Consensus 207 --------~v~~v~~~~~g------------~~D~~~Le~~l~-~~~~~p~~vv~t~g-tt~tG~id~----l~~I~~ia 260 (476)
.+..++..... ..++++|+++|+ ....++.+|+++.. .+ +|.+.| +++|.++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 23444432111 112899999997 32233456777666 68 998876 99999999
Q ss_pred HHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcC---Ccccc
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSS---NVEYL 335 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~---~~~yl 335 (476)
++||+ ++++|++|.++........ .+... ..|+++++ |.++.+ +++|++++++++++.+.. ...++
T Consensus 246 ~~~~~-----llI~DEv~~g~g~~g~~~~--~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~ 316 (452)
T 3n5m_A 246 QKHGA-----LLISDEVICGFGRTGKAFG--FMNYDVKPDIITMA--KGITSAYLPLSATAVKREIYEAFKGKGEYEFFR 316 (452)
T ss_dssp HHHTC-----EEEEECTTTTTTTTSSSSG--GGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCC
T ss_pred HHcCC-----EEEEecchhCCCcccccch--hhhcCCCCCEEeec--ccccCCCcceEEEEECHHHHHHHhhccCCCCcc
Confidence 99999 9999999986532211000 11111 26777654 888878 999999999988777643 11121
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEec---CC--
Q 011842 336 ASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFER---PQ-- 406 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~---~~-- 406 (476)
.. .++ ...++.+.+++..+..-.-++.+++..++.+++++.|++. +......+...++.+.. ..
T Consensus 317 ~~--~t~-----~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~ 389 (452)
T 3n5m_A 317 HI--NTF-----GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389 (452)
T ss_dssp CC--CSS-----TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTT
T ss_pred cc--CCC-----CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCccc
Confidence 11 111 1224555555444421111345666677777777777653 33322222222333322 11
Q ss_pred ----c---HHH-----hhceeec-cc------CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 407 ----D---EEF-----VRRWQLA-CQ------GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 407 ----~---~~~-----~~~~~l~-~~------~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
. ..+ .++..+. .. .+.+|++++..+|+++|++++++|+++.+
T Consensus 390 ~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 390 EPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 0 112 1233332 22 47899998899999999999999988764
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-19 Score=181.98 Aligned_cols=223 Identities=15% Similarity=0.088 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEE-eC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKV-DC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v-~~ 213 (476)
....++++.+++++|.+. .+++++||+|+..++.++.. +++.|+++..+|.+....+ +..|++++.+ +.
T Consensus 58 ~~~~~l~~~la~~~g~~~----~v~~~sGt~A~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGKA----ALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred hHHHHHHHHHHHHhCCCc----eEEecCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 344566677888888762 56677789999999887754 8999999999999987765 7789999999 76
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCc-ccccccccccCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGAL-FGLMMPFVKKAPKV 292 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~-~g~~~~~~~~~~~~ 292 (476)
+ |+++|+++|++++ .+|++++++|++|.+.|+++|+++|++||+ ++++|++| +.+.. . .. +
T Consensus 132 ~-----d~~~l~~~i~~~~---~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~-----~livD~~~~~~g~~-~-~~---~ 193 (421)
T 2ctz_A 132 E-----RPEEFLALTDEKT---RAWWVESIGNPALNIPDLEALAQAAREKGV-----ALIVDNTFGMGGYL-L-RP---L 193 (421)
T ss_dssp C-----CHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTC-----EEEEECGGGGGGTS-C-CG---G
T ss_pred C-----CHHHHHHhhccCC---eEEEEECCCCCCCcccCHHHHHHHHHHcCC-----EEEEECCccccccc-C-Cc---c
Confidence 5 8999999997654 488889999999999999999999999999 99999999 64421 1 11 1
Q ss_pred CCcccccEEEEcCCCCCCCCC-CceeEEeeh-h--h----hhhhcC-CccccCCCC-----------------CcccCCC
Q 011842 293 SFKKPIGSVSVSGHKFVGCPM-PCGVQITRM-E--H----INVLSS-NVEYLASRD-----------------ATIMGSR 346 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~-~~G~l~~~~-~--~----~~~l~~-~~~yl~~~~-----------------~~~~~sr 346 (476)
...+|+++.|+||+++.|. ++|++++++ + + .+.+.. ...|..... ....+.+
T Consensus 194 --~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~ 271 (421)
T 2ctz_A 194 --AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp --GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred --ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence 1238999999999999755 578777752 1 2 122211 011100000 0001111
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeE
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~ 391 (476)
..++..|..+.. .+.+..++++..++++++.+.|++.+...
T Consensus 272 --~~~~~a~~~~~~--l~~l~~r~~~~~~~a~~l~~~L~~~p~v~ 312 (421)
T 2ctz_A 272 --LGPFEAWVVLLG--METLSLRAERHVENTLHLAHWLLEQPQVA 312 (421)
T ss_dssp --CCHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred --CCHHHHHHHHcC--cchHHHHHHHHHHhHHHHHHHHHhCCCee
Confidence 224455554443 35566778888899999999999975433
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-18 Score=178.29 Aligned_cols=282 Identities=12% Similarity=0.022 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-------CCC-cEEEecCCCch-HHHHHHHHcC----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-------FPD-GILYASRESHY-SVFKAARMYR---- 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-------~p~-~~Vl~s~~~H~-S~~~~~~~~G---- 205 (476)
+...++.+.+++++|.+ .+++|+|||+||..++.+++.. .++ +.|++.+++|. +...++.+.|
T Consensus 107 ~~~~~l~~~la~~~g~~----~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~ 182 (433)
T 1z7d_A 107 VPLGICERYLTNLLGYD----KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKC 182 (433)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------
T ss_pred HHHHHHHHHHHhhcCCC----eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccc
Confidence 55666777788888753 3899999999999999988742 245 77777776654 4444444444
Q ss_pred --------CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHhCCCCCceEEE
Q 011842 206 --------MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD----DLDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 206 --------~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id----~l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+++.+|.+ |+++|+++|+. .++.+|+++...+++|.+. ++++|.++|++||+ +++
T Consensus 183 ~~~~~p~~~~v~~~~~~-----d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----llI 250 (433)
T 1z7d_A 183 TSNFGPFAPQFSKVPYD-----DLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV-----LFV 250 (433)
T ss_dssp ---------CEEEECTT-----CHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-----EEE
T ss_pred cccCCCCCCCeEEeCCC-----CHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 345666654 89999999952 2344666665566788765 79999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.++... .... .++... ..|+++ +.|+++++ +++|++++++++++.+.... ...++.+ +....
T Consensus 251 ~DEv~~g~g~~-g~~~-~~~~~~~~~di~t--~sK~l~~G~~~~G~v~~~~~~~~~l~~~~-----~~~t~~~--~~~~~ 319 (433)
T 1z7d_A 251 ADEVQTGLGRT-GKLL-CVHHYNVKPDVIL--LGKALSGGHYPISAVLANDDIMLVIKPGE-----HGSTYGG--NPLAA 319 (433)
T ss_dssp EECTTTTTTTT-SSSS-GGGGGTCCCSEEE--ECGGGGTTSSCCEEEEECHHHHTTCCTTC-----CCCTTTT--CHHHH
T ss_pred EecCccCCCcC-Ccch-hhHhcCCCCCEEE--ECccccCCCCCeEEEEECHHHHhhhcccc-----ccccCCC--CHHHH
Confidence 99999763221 1110 011111 267774 45999987 78999999988766553210 0112211 11122
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc--CCe--EeecCCeeEEEEecCC----cHHHh-----hceeec-
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA--GIS--AMLNELSSTVVFERPQ----DEEFV-----RRWQLA- 417 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~--g~~--~~~~~~~~iv~f~~~~----~~~~~-----~~~~l~- 417 (476)
....++++.+.. ++..++..++++++.+.|++. ++. ...++..+++.+..+. ...+. +++.+.
T Consensus 320 aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~ 396 (433)
T 1z7d_A 320 SICVEALNVLIN---EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRD 396 (433)
T ss_dssp HHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEec
Confidence 223334443322 246677788889999998875 432 1222334555555442 22232 233333
Q ss_pred ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 418 ~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
...+.+|++++..+|++||++++++|+++.+++
T Consensus 397 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 397 VHDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp ETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 346789999888899999999999999987664
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=178.50 Aligned_cols=279 Identities=11% Similarity=0.073 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc--EEEecCCCchHHHH---HHHHcCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG--ILYASRESHYSVFK---AARMYRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~--~Vl~s~~~H~S~~~---~~~~~G~~v~~v~~ 213 (476)
....++++++++++|.+. .++++|||+|+..++.++.. +++ +|+++...|++... .+...|++++.++.
T Consensus 48 ~~~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~~~--~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIWAD--RKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT 121 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHHH--HHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHHh--cCCCcEEEEeccceeeehhcchHHHhcCceEEecCC
Confidence 455567778888888864 47778999999999988876 444 47788888876642 23567999999987
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcc-ccccCHH---HHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVK-GAVDDLD---LVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~t-G~id~l~---~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+++.+|+++|+++ .+++ .+|+++++++++ |.+.|++ +|+++|++||+ |+|+|++|..+..... ..
T Consensus 122 -~~~~~d~~~l~~~-~~~~---~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~-----~li~D~a~~~~~~~~~-~~ 190 (359)
T 3pj0_A 122 -ANQLLTIDDIKSL-REPV---SSVLIELPQREIGGQLPAFEELEKISEYCHEQGI-----SLHLDGARLWEITPFY-QK 190 (359)
T ss_dssp -TTSCCCHHHHHTC-SSCC---SEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTC-----EEEEEETTCGGGHHHH-TC
T ss_pred -cCCCcCHHHHHhc-cCCc---eEEEEEecccCCCcccCCHHHHHHHHHHHHHcCC-----EEEEECcchhcchhhh-CC
Confidence 4689999999988 4333 488888887777 6876654 55999999999 9999999864332111 00
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCC-hhHHHHHHHHHHhChhcHHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNG-HAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~-~~~l~~~~~l~~~g~~g~~~ 368 (476)
....+...+|+++.++||+++.|.+ |+++.++++++.+......... ..... ..+.....++... .+
T Consensus 191 ~~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~~l~~~-----~~ 258 (359)
T 3pj0_A 191 SAEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGG------DLISLYPYILSADYYFEKR-----IG 258 (359)
T ss_dssp CHHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTC------CCSCCHHHHHHHHHHHHHH-----GG
T ss_pred CHHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCC------CcchhHHHHHHHHHHHHHH-----HH
Confidence 0011123478999999999988865 7777777776655321111110 00111 1111122223221 24
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCeEe-ecCCeeEEEEecCCc-----HHHh-----hceeecc-------cCCEEEEEEcC
Q 011842 369 EVQKCLRNAHYLKDRLLDA-GISAM-LNELSSTVVFERPQD-----EEFV-----RRWQLAC-------QGNIAHVVVMP 429 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~-g~~~~-~~~~~~iv~f~~~~~-----~~~~-----~~~~l~~-------~~~~lRv~~~~ 429 (476)
.+++..++++++.+.|++. |+... .++.++.+++..+.. ..+. ++..+.. ...++|+++..
T Consensus 259 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~ 338 (359)
T 3pj0_A 259 KMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGD 338 (359)
T ss_dssp GHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCT
T ss_pred HhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecC
Confidence 4556778889999999997 54433 345677777765432 1222 2232221 12467887754
Q ss_pred C---CCHHHHHHHHHHHHHH
Q 011842 430 N---VTIDKLDDFLNELIEN 446 (476)
Q Consensus 430 ~---~T~edid~~~~~l~~~ 446 (476)
. .+.++++..++.|.+.
T Consensus 339 ~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 339 AFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp TGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHhc
Confidence 4 4788888888777653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-18 Score=173.86 Aligned_cols=295 Identities=9% Similarity=-0.008 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh---CC---CcEEEecCCCchHHHHHHHHc-C------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV---FP---DGILYASRESHYSVFKAARMY-R------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~---~p---~~~Vl~s~~~H~S~~~~~~~~-G------ 205 (476)
+...++.++++++++.+. ..++||+|||+|+..|+.+++.. .. ++.|++.+++|+.....+..+ |
T Consensus 87 ~~~~~la~~l~~~~~~~~--~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 164 (448)
T 3dod_A 87 VPATQLAETLIDISPKKL--TRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHH 164 (448)
T ss_dssp HHHHHHHHHHHHHSCTTE--EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC---------------------
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccc
Confidence 677788899999986543 35999999999999999998863 22 478888887765443322222 2
Q ss_pred ------CeEEEEeCCCCCc-----------cCHHHHHHHHHcCCCCcEEEEEeeCC-CccccccC----HHHHHHHHHHh
Q 011842 206 ------MECVKVDCLISGE-----------IDCADFKAKLLQNKDKPAIINVNIGT-TVKGAVDD----LDLVIQTLEES 263 (476)
Q Consensus 206 ------~~v~~v~~~~~g~-----------~D~~~Le~~l~~~~~~p~~vv~t~gt-t~tG~id~----l~~I~~ia~~~ 263 (476)
..+..+|.+...+ .|+++|+++|.+...++.+|+++... ++.|.+.+ +++|.++|++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~ 244 (448)
T 3dod_A 165 VYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY 244 (448)
T ss_dssp --------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT
T ss_pred cccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh
Confidence 1234455443222 35899999998433334466665555 78887766 99999999999
Q ss_pred CCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCC-CceeEEeehhhhhhhcCC---cc-ccCC
Q 011842 264 GFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSN---VE-YLAS 337 (476)
Q Consensus 264 g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~-~~G~l~~~~~~~~~l~~~---~~-yl~~ 337 (476)
|+ +|++|++|.++........ ..... ..|+++++ |.++.++ ++|+++.++++++.+... .. +..
T Consensus 245 ~~-----~lI~DEv~~g~g~~g~~~a--~~~~~~~~di~t~s--K~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~- 314 (448)
T 3dod_A 245 DV-----LMIVDEVATGFGRTGKMFA--CEHENVQPDLMAAG--KGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFH- 314 (448)
T ss_dssp TC-----EEEEECTTTTTTTTSSSSG--GGGGTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCC-
T ss_pred CC-----EEEEeccccCCCcccchhh--hhhcCCCCCEEEec--ccccCCcCceEEEEECHHHHHHhhhccccCCcccc-
Confidence 99 9999999986432211100 11111 25777654 9888885 999999999887766431 00 110
Q ss_pred CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh---cCCeEeecCCeeEEEEecCCc-------
Q 011842 338 RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD---AGISAMLNELSSTVVFERPQD------- 407 (476)
Q Consensus 338 ~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~---~g~~~~~~~~~~iv~f~~~~~------- 407 (476)
..++. ..++.+.+++..+..-.-++.+++..++.+++++.|++ .+......+...++.+..+.+
T Consensus 315 -~~t~~-----~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 388 (448)
T 3dod_A 315 -GHSYT-----GNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPY 388 (448)
T ss_dssp -CCTTT-----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCC
T ss_pred -cCCCC-----cCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCccccccc
Confidence 01111 12344444444432111134566666677777777765 332222222233444443321
Q ss_pred -------HHHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 -------EEFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 -------~~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+. ++..+...++.+|++++..+|+++|++++++|+++.+++.
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1221 2333434468999999999999999999999999988765
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=181.87 Aligned_cols=283 Identities=11% Similarity=0.041 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCC---CchHHHHHHHHcCCeEEEEeCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRE---SHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~---~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
..+++++.+++++++|.++ +...++|+|||+|+..++.++ ||+.|+++.+ .|+++...++..|++++.+
T Consensus 57 ~~~~~~~~~~~a~~~g~~~-~~~~~~~~ggt~a~~~~~~~~----~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v--- 128 (374)
T 2aeu_A 57 SYFAEKVNEYGLKHLGGDE-NDKCVGFNRTSSAILATILAL----KPKKVIHYLPELPGHPSIERSCKIVNAKYFES--- 128 (374)
T ss_dssp HHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHH----CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---
T ss_pred hHHHHHHHHHHHHHhCCCC-cceEEEEcChHHHHHHHHHhC----CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---
Confidence 4667888888999999852 234899999999999998865 8899999999 4566556788889998888
Q ss_pred CCCccCHHHHHHHHHcCCCCcEE-EEEeeCCCccc-cccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAI-INVNIGTTVKG-AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~-vv~t~gtt~tG-~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~~ 291 (476)
.|+++|+++ .+ ++.+ |+++++++++| ...++++|.++|++||+ ++|+|++|+.+.. +.... ..
T Consensus 129 ----~d~~~l~~~-~~---~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~-----~li~De~~~~~~~~~~~~~-~~ 194 (374)
T 2aeu_A 129 ----DKVGEILNK-ID---KDTLVIITGSTMDLKVIELENFKKVINTAKNKEA-----IVFVDDASGARVRLLFNQP-PA 194 (374)
T ss_dssp ----SCHHHHHTT-CC---TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTC-----CEEEECTTHHHHHHHTTCC-CH
T ss_pred ----CCHHHHHhc-CC---CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCC-----EEEEECCcccccccccccC-Cc
Confidence 288999887 33 3447 88888999999 89999999999999999 9999999976531 11110 00
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
. ...+|+++.|+||++++ +++|+++.++++++.+.....+. ..+.+......+..++..+..+.+++..+
T Consensus 195 ~--~~~~di~~~S~sK~l~g-~~~G~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 264 (374)
T 2aeu_A 195 L--KLGADLVVTSTDKLMEG-PRGGLLAGKKELVDKIYIEGTKF-------GLEAQPPLLAGIYRALKNFNLERIRKAFE 264 (374)
T ss_dssp H--HHTCSEEEEETTSSSSS-CSCEEEEEEHHHHHHHHHHHHTT-------TCBCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred c--ccCCcEEEecCcccccC-cceEEEEECHHHHHHHHHhhccc-------cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 11368999999999774 69999999988766553222111 11111111222223333332112222222
Q ss_pred HHHHH----HHHHHHHHHhc----CCeEeecCCeeEEEEe-cCCcH----------HHh--hceeec------ccCCEEE
Q 011842 372 KCLRN----AHYLKDRLLDA----GISAMLNELSSTVVFE-RPQDE----------EFV--RRWQLA------CQGNIAH 424 (476)
Q Consensus 372 ~~~~~----a~~l~~~L~~~----g~~~~~~~~~~iv~f~-~~~~~----------~~~--~~~~l~------~~~~~lR 424 (476)
+...+ .+.|.+.|... |+....++...++.+. .+... .+. ++..+. ...+.+|
T Consensus 265 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lR 344 (374)
T 2aeu_A 265 RAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLR 344 (374)
T ss_dssp HHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEE
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEE
Confidence 22222 24444444432 3322223333333332 22110 111 233331 1235799
Q ss_pred EEEcC-CCCHHHHHHHHHHHHHHHHHHHh
Q 011842 425 VVVMP-NVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 425 v~~~~-~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++++. ..+++++++++++|+++.+++++
T Consensus 345 i~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 345 IDLTSRDAERIDDNYIIKAIVESIKMAFK 373 (374)
T ss_dssp EETTSGGGGGSCHHHHHHHHHHHHHHHTC
T ss_pred EEcCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99864 44555699999999999887653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-22 Score=203.44 Aligned_cols=291 Identities=9% Similarity=-0.000 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-C
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-I 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-~ 215 (476)
..++++++.+++.+.+|.+.+...+++|+|+++|+..++.++.. +++.|++..++|.++...++..|++++.+|.+ .
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 145 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTK--EGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEE 145 (392)
Confidence 45888999999998888543334689999999999999888765 88999999999999999999999999999985 3
Q ss_pred C--CccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 216 S--GEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 ~--g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
+ +.+|+++|++++. .++ .+|+++++.+++|.+.+ +++|+++|++||+ ++++|++|+.+.+......
T Consensus 146 ~g~~~~d~~~l~~~l~~~~~---~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~-----~li~De~~~~~~~~g~~~~ 217 (392)
T 3b1d_A 146 NGLFQIDFEQLENDIVENDV---KLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHV-----ILVSDEIHQDLTLFGHEHV 217 (392)
Confidence 2 4589999999997 333 36667889999999865 9999999999999 9999999987665322221
Q ss_pred CCCCCc---ccccEEEEcCCCCCC-CCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--C
Q 011842 290 PKVSFK---KPIGSVSVSGHKFVG-CPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--G 362 (476)
Q Consensus 290 ~~~~~~---~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g 362 (476)
+...+. ...+++..+++|+++ .++++|+++++++ +++.+....... ++ ++. ..+.++++...+ +
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~-----~~-~~~---~~~~~~a~~~~l~~~ 288 (392)
T 3b1d_A 218 SFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN-----NH-HEV---SSLGYIATETAYRYG 288 (392)
Confidence 112221 124577788999997 7889999998765 655543221111 00 111 123333333322 2
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHh-cCCeEeecCCeeEEE-EecCC----cHHHhh------ceeecc-------cCCEE
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLD-AGISAMLNELSSTVV-FERPQ----DEEFVR------RWQLAC-------QGNIA 423 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~iv~-f~~~~----~~~~~~------~~~l~~-------~~~~l 423 (476)
.+.+++..++..++++++.+.|++ .+...+.++..+++. +..+. ..++.+ ++.+.. ..+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~i 368 (392)
T 3b1d_A 289 KPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHA 368 (392)
Confidence 344667777888888999999887 432233344444443 44432 122222 222211 23578
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 424 HVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 424 Rv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
|+++.. ++++|+.+++.|.++.+
T Consensus 369 Ri~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 369 RLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 888653 68999999999887653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=182.24 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHcCCCCCcccEEE---cCCchhHHHHHHHHHHhhCCCcEEEecC-CCchHHH-----------HHHHHcC
Q 011842 141 EVGVLDWFARLWELENNEYWGYI---TNCGTEGNLHGILVGREVFPDGILYASR-ESHYSVF-----------KAARMYR 205 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~---t~ggt~An~~al~aa~~~~p~~~Vl~s~-~~H~S~~-----------~~~~~~G 205 (476)
.+++.+.+++++|.+. .++ ++|||+||..++.+... |||.|++++ +.|.... ..++..|
T Consensus 76 ~~~Le~~lA~l~g~e~----alv~p~~~sGt~A~~~al~all~--pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G 149 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES----AFVRPHFVNGTHAIGAALFGNLR--PNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG 149 (427)
T ss_dssp HHHHHHHHHHHHTCSE----EEEETTCCSHHHHHHHHHHHTCC--TTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT
T ss_pred HHHHHHHHHHHhCCCc----eEEeCCCCcHHHHHHHHHHHhcC--CCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC
Confidence 4555677889999864 466 89999999998887765 999999998 7776554 3445679
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcc
Q 011842 206 MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNI----GTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALF 279 (476)
Q Consensus 206 ~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~----gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~ 279 (476)
++++.++. +++.+|+++|++++.+.. ++.+|++++ +++++|.+.|+++|+++|++ ||+ ++++|++|+
T Consensus 150 ~~~~~v~~-~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~-----~livD~a~~ 222 (427)
T 3hvy_A 150 VKYKMVDL-KDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV-----IVFVDNCYG 222 (427)
T ss_dssp CEEEECCC-BTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS-----EEEEECTTC
T ss_pred CEEEEecC-CCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC-----EEEEECCcc
Confidence 99999998 688999999999998311 234888888 89999999999999999999 899 999999998
Q ss_pred cccccccccCCCCCCcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcCC--ccccCCCCCcccCCCCChhHHHHH
Q 011842 280 GLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSSN--VEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~~--~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
.+.+.. . .....+|+++.|+||+++++ ...|+++.++++++.+... ...+. ...+.... ..|
T Consensus 223 ~~~~~~-~-----p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g-----~~~~~~~~---~a~ 288 (427)
T 3hvy_A 223 EFVEEK-E-----PTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIG-----GECGSTFG---VMR 288 (427)
T ss_dssp TTTSSS-C-----GGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTG-----GGCCCCTT---CHH
T ss_pred ccccCC-C-----CcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcc-----cccCCCHH---HHH
Confidence 665321 1 11123899999999999863 3458999988877665331 11111 01111111 123
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-----EEEEecCC
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-----TVVFERPQ 406 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-----iv~f~~~~ 406 (476)
.+++. ......++++..+++.++.+.|++.|+.+ .+..+. ++.|...+
T Consensus 289 ~~~~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~~~~~~~li~~~~l~~ 341 (427)
T 3hvy_A 289 SLYEG--LFMAPHVTIEAVKGAVFCARIMELAGFDV-LPKYNDKRTDIIQAIKFND 341 (427)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSEEEEECSS
T ss_pred HHHHh--HhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCCCCCCceEEEEEeCCC
Confidence 33332 24456788899999999999999999865 433333 77777654
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=180.80 Aligned_cols=280 Identities=11% Similarity=0.004 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-------CCC-cEEEecCCC-chHHHHHHHHcC----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-------FPD-GILYASRES-HYSVFKAARMYR---- 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-------~p~-~~Vl~s~~~-H~S~~~~~~~~G---- 205 (476)
+...++.+++++++|.+ .+++|+||++|+..++.+++.. .++ +.|++.+++ |.+...++...|
T Consensus 118 ~~~~~l~~~la~~~g~~----~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~ 193 (439)
T 2oat_A 118 NVLGEYEEYITKLFNYH----KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS 193 (439)
T ss_dssp SSHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhc
Confidence 34455666777777743 3899999999999999988742 144 666666655 455555555555
Q ss_pred --------CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc----CHHHHHHHHHHhCCCCCceEEE
Q 011842 206 --------MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD----DLDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 206 --------~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id----~l~~I~~ia~~~g~~~~~~~lh 273 (476)
.+++.+|.+ |+++|+++|+. .++.+|+++...+++|.+. ++++|.++|++||+ +++
T Consensus 194 ~~~~~p~~~~v~~~~~~-----d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gi-----llI 261 (439)
T 2oat_A 194 YDGFGPFMPGFDIIPYN-----DLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV-----LFI 261 (439)
T ss_dssp HTTSCSCCTTEEEECSS-----CHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC-----EEE
T ss_pred ccCCCCCCCCeEEeCCC-----CHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEE
Confidence 467777764 89999999952 2344666665566788765 79999999999999 999
Q ss_pred EecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 274 CDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+|++|.++... .... .++... ..|++ +++|+++++ +++|++++++++++.+.... ...++.++ ....
T Consensus 262 ~DEv~~g~g~~-g~~~-~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~-----~~~t~~~~--~~~~ 330 (439)
T 2oat_A 262 ADEIQTGLART-GRWL-AVDYENVRPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGE-----HGSTYGGN--PLGC 330 (439)
T ss_dssp EECTTTTTTTT-SSSS-GGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTS-----SCCSSTTC--HHHH
T ss_pred EeccccCCccC-Ccch-hHHHhCCCCcEE--EecccccCCCCCeEEEEECHHHHhccCCCC-----cccCCCcC--HHHH
Confidence 99999653221 1110 011111 26776 456999877 78999999988766553210 01122211 1222
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe--ecCCeeEEEEecCC-----cHHHh-----hceeec-c
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM--LNELSSTVVFERPQ-----DEEFV-----RRWQLA-C 418 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~--~~~~~~iv~f~~~~-----~~~~~-----~~~~l~-~ 418 (476)
....++++.+.. ++..++..+++++|.+.|++.++..+ .++..+++.+..+. ..++. +++.+. .
T Consensus 331 aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~ 407 (439)
T 2oat_A 331 RVAIAALEVLEE---ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT 407 (439)
T ss_dssp HHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS
T ss_pred HHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC
Confidence 223344444322 24667788899999999988754321 22233455555442 22232 233333 3
Q ss_pred cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|++++..+|++||++++++|+++.+
T Consensus 408 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 408 HGDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp SSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 357899998889999999999999998764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-19 Score=181.05 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
...+++++++++++|.+. .+++++|++|+..++.+... |++.|+++++.|.+... .++..|++++.++.+
T Consensus 82 p~~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 82 PTVEDLEQRLKNLTGALG----VLALGSGMAAISTAILTLAR--AGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 455667777888898863 67888899999999888755 89999999999988776 667889999999986
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|+++|+++|.+++ .+|++++++|++|.+.|+++|+++|++||+ ++++|++|+.+.... . .
T Consensus 156 -----d~~~l~~ai~~~t---~~v~~e~p~NptG~~~dl~~i~~la~~~g~-----~livD~a~~~~~~~~--~-----~ 215 (430)
T 3ri6_A 156 -----DSLAVEHACDETT---KLLFLETISNPQLQVADLEALSKVVHAKGI-----PLVVDTTMTPPYLLE--A-----K 215 (430)
T ss_dssp -----CHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHTTTC-----CEEEECTTSCTTTCC--G-----G
T ss_pred -----CHHHHHHhhCCCC---eEEEEECCCCCCCeecCHHHHHHHHHHcCC-----EEEEECCCcccccCC--h-----H
Confidence 8999999997654 488899999999999999999999999999 999999998544311 0 1
Q ss_pred cccccEEEEcCCCCCCCC--CCceeEEeehh--hh---------hhhcCCccccCC---CCCcccCCCCChhHHHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCP--MPCGVQITRME--HI---------NVLSSNVEYLAS---RDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~--~~---------~~l~~~~~yl~~---~~~~~~~sr~~~~~l~~~~~l 358 (476)
..++|+++.|++|++++| .-.|+++.+.. +. +.+. ...|+.. ......++. ..++..|..+
T Consensus 216 ~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g-~~~~i~~~~~~~~~~~g~~--~~~~~a~l~l 292 (430)
T 3ri6_A 216 RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG-PMAFLYKARKEVFQNLGPS--LSPHNAYLQS 292 (430)
T ss_dssp GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHG-GGHHHHHHHHTHHHHHCCC--CCHHHHHHHH
T ss_pred HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhc-hhhHHHHHHHHHHHhcCCC--CCHHHHHHHH
Confidence 123899999999999865 24556654332 20 0000 0000000 000011221 2245555554
Q ss_pred HHhChhcHHHHHHHHHHHHHHHHHHHHhcCCe-EeecCC----------------ee-EEEEecCC
Q 011842 359 NRKGYKGFQKEVQKCLRNAHYLKDRLLDAGIS-AMLNEL----------------SS-TVVFERPQ 406 (476)
Q Consensus 359 ~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~-~~~~~~----------------~~-iv~f~~~~ 406 (476)
+ +.+.+..++++..++++++.+.|++.+.. .+..|. .. ++.|..++
T Consensus 293 ~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~ 356 (430)
T 3ri6_A 293 L--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES 356 (430)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred h--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC
Confidence 4 34667888899999999999999987643 343332 33 88888764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=181.89 Aligned_cols=294 Identities=12% Similarity=-0.043 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHc--------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMY-------- 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~-------- 204 (476)
+...+++++++++++.+.+ .++||+|||+||..|+.+++.. ..++.|++.+.+|......+..+
T Consensus 118 ~~~~~L~e~la~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 195 (457)
T 3tfu_A 118 EPAARLAKLLVDITPAGLD--TVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMH 195 (457)
T ss_dssp HHHHHHHHHHHHHSSTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----
T ss_pred HHHHHHHHHHHHhCCCCcC--EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccc
Confidence 5667888899999976543 4999999999999999998763 23446666555543322222222
Q ss_pred ------CCeEEEEeCC--CCCccCHHHHHHHHHcCCCCcEEEEEee-CCCccccccC----HHHHHHHHHHhCCCCCceE
Q 011842 205 ------RMECVKVDCL--ISGEIDCADFKAKLLQNKDKPAIINVNI-GTTVKGAVDD----LDLVIQTLEESGFTQDRFY 271 (476)
Q Consensus 205 ------G~~v~~v~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~-gtt~tG~id~----l~~I~~ia~~~g~~~~~~~ 271 (476)
...+..++.. ..+..|+++|+++|++...++.+|+++. ..+++|.+.| +++|.++|++||+ +
T Consensus 196 ~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gi-----l 270 (457)
T 3tfu_A 196 SLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV-----L 270 (457)
T ss_dssp ------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTC-----E
T ss_pred ccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCC-----E
Confidence 1133444432 2234689999999985433445777776 6788898866 9999999999999 9
Q ss_pred EEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcC--CccccCCCCCcccCCCC
Q 011842 272 IHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSS--NVEYLASRDATIMGSRN 347 (476)
Q Consensus 272 lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~ 347 (476)
+++|++|.++.... ... .++... ..|++++ .|.++++ +++|++++++++.+.+.. ...+... .++.
T Consensus 271 lI~DEv~~g~gr~G-~~~-a~~~~~~~pdiit~--sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~--~t~~---- 340 (457)
T 3tfu_A 271 LIFDEIATGFGRTG-ALF-AADHAGVSPDIMCV--GKALTGGYLSLAATLCTADVAHTISAGAAGALMHG--PTFM---- 340 (457)
T ss_dssp EEEECTTTTTTTTS-SSS-THHHHTCCCSEEEE--CGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCC--CTTT----
T ss_pred EEEEcCccCCcccc-chh-HhHhcCCCceEEEE--ChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEe--cCCC----
Confidence 99999997643211 110 001111 2677755 4888877 599999999988776631 1111111 1111
Q ss_pred ChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---CeEeecCCeeEEEEecCC---cHHHh-----hceee
Q 011842 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---ISAMLNELSSTVVFERPQ---DEEFV-----RRWQL 416 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l 416 (476)
..++.+.+++..+..-.-++..++..++.+++++.|++.. .........+++.+..+. ..++. +++.+
T Consensus 341 -~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v 419 (457)
T 3tfu_A 341 -ANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWL 419 (457)
T ss_dssp -TCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEEC
T ss_pred -cCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEE
Confidence 1234444444433211112456677778888999888752 222222234455555432 12222 34444
Q ss_pred cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 417 ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 417 ~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
...++.+|+++...+|++||++++++|+++.+++
T Consensus 420 ~~~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 420 RPFRNLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp CCBTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4556889988888899999999999999988754
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=179.07 Aligned_cols=290 Identities=13% Similarity=0.026 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch-HHHHHHHHcC-----------C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SVFKAARMYR-----------M 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~-S~~~~~~~~G-----------~ 206 (476)
+...++.+.++++++.+.+ .+++|+||++|+..++.+++....++.|++.+++|. +...+....+ .
T Consensus 85 ~~~~~l~~~la~~~~~~~~--~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 162 (433)
T 1zod_A 85 RPVVDLATRLANITPPGLD--RALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAV 162 (433)
T ss_dssp HHHHHHHHHHHHHSCTTCC--EEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCT
T ss_pred HHHHHHHHHHHHhCCCCcC--EEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCC
Confidence 5566777888888887643 599999999999999988764224566776666543 3333332211 2
Q ss_pred eEEEEeCCCC------------CccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCc
Q 011842 207 ECVKVDCLIS------------GEIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDR 269 (476)
Q Consensus 207 ~v~~v~~~~~------------g~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~ 269 (476)
.++.++.... +.+|+++|+++|++.. .++.+|+++...+++|.+.+ +++|.++|++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~---- 238 (433)
T 1zod_A 163 GSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM---- 238 (433)
T ss_dssp TEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC----
T ss_pred CceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC----
Confidence 4455554211 1357999999997521 23446666544577897766 9999999999999
Q ss_pred eEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCC
Q 011842 270 FYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 270 ~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
++++|++|+++.... ... .++... ..|++++ .|+++.++++|++++++++++.+... .+.. ..++.+
T Consensus 239 -~li~DEv~~~~g~~g-~~~-~~~~~~~~~di~s~--sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~--~~t~~~---- 306 (433)
T 1zod_A 239 -LLILDEAQTGVGRTG-TMF-ACQRDGVTPDILTL--SKTLGAGLPLAAIVTSAAIEERAHEL-GYLF--YTTHVS---- 306 (433)
T ss_dssp -EEEEECTTTTTTTTS-SSS-THHHHTCCCSEEEE--CHHHHTTSSCEEEEECHHHHHHHHHT-TCCC--CCTTTT----
T ss_pred -EEEEeccccCCCcCc-hHh-HHhhcCCCCCEEEe--cccccCCCCeeEEEEhHHHHHhhccC-CCCC--CCCCCc----
Confidence 999999998643211 100 011111 2566654 48887789999999998877665321 1110 011111
Q ss_pred hhHHHHHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC-----------cHHH
Q 011842 349 HAPIFLWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ-----------DEEF 410 (476)
Q Consensus 349 ~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~-----------~~~~ 410 (476)
.++.+.+ +++.+..+ +..++..+++++++++|++. +.....++..+++.+..+. ...+
T Consensus 307 -~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 382 (433)
T 1zod_A 307 -DPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 382 (433)
T ss_dssp -CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHH
Confidence 2333333 33333222 35667777888888888764 4322223333444444321 1222
Q ss_pred h-----hceeeccc---C--CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 411 V-----RRWQLACQ---G--NIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 411 ~-----~~~~l~~~---~--~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. +++.+... + +.+|++++..+|+++|++++++|+++.+++
T Consensus 383 ~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 383 TRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp HHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 2 23333222 2 789999888999999999999999887653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=181.20 Aligned_cols=290 Identities=11% Similarity=0.006 Sum_probs=186.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC---cccE--EEcCCchhHHHHHHHHHHhh-CCCcEEEecCCCchHHHHHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENN---EYWG--YITNCGTEGNLHGILVGREV-FPDGILYASRESHYSVFKAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~---~~~g--~~t~ggt~An~~al~aa~~~-~p~~~Vl~s~~~H~S~~~~~~~~G~~v~ 209 (476)
+..++++++.+|+. |.... +... ..|.||++|+..+..+++.. .+|+.|++++++|.++...++..|++++
T Consensus 80 g~~~lr~~ia~~~~---~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 156 (409)
T 4eu1_A 80 GIASFVEEAQKLCF---GPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELT 156 (409)
T ss_dssp CCHHHHHHHHHHHH---CSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHc---CCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEE
Confidence 45688888888773 44310 1224 45899999988765544322 3789999999999999999999999999
Q ss_pred EEeCC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 210 KVDCL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 210 ~v~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
.+|++ +++.+|+++|++++.+..+...+++++++.|+||.+.+ +++|+++|++||+ ++++|++|+.+.+.
T Consensus 157 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~-----~li~De~y~~~~~~ 231 (409)
T 4eu1_A 157 PYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNH-----IPFVDMAYQGFATG 231 (409)
T ss_dssp EECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTTTTS
T ss_pred EEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCc-----EEEEeccccccccC
Confidence 99983 46789999999999864334457777899999999876 5669999999999 99999999876543
Q ss_pred cc--ccCCCCCC--cccccEEEEcCCCCCC-CCCCceeE--Eeeh-h----hhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 285 FV--KKAPKVSF--KKPIGSVSVSGHKFVG-CPMPCGVQ--ITRM-E----HINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 285 ~~--~~~~~~~~--~~~~Dsi~~s~hK~l~-~p~~~G~l--~~~~-~----~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
.. ...+...+ ...-.++..+++|.++ .++++|++ ++.+ + +.+.+.....+. ..+. ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~-------~~~~---~~~ 301 (409)
T 4eu1_A 232 QLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPM-------YNNP---PLY 301 (409)
T ss_dssp CHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH-------HSSC---CHH
T ss_pred CcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh-------cCCC---ChH
Confidence 21 00000000 0112356678889886 67899997 5544 4 333332111110 1111 134
Q ss_pred HHHHHHHHhC--------hhcHHHHHHHHHHHHHHHHHHHHhcCC---eEeecCCeeEEEEecCCcH---HHhh--ceee
Q 011842 353 FLWYTLNRKG--------YKGFQKEVQKCLRNAHYLKDRLLDAGI---SAMLNELSSTVVFERPQDE---EFVR--RWQL 416 (476)
Q Consensus 353 ~~~~~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~iv~f~~~~~~---~~~~--~~~l 416 (476)
.++++...+. .+.+++..++..++++++.+.|++.|. ..+..+..+++.|.....+ .+.+ ++.+
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 381 (409)
T 4eu1_A 302 GAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYM 381 (409)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEE
Confidence 4444443332 234667788889999999999999873 1222344444444322221 1222 2333
Q ss_pred cccCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 417 ACQGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 417 ~~~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
... .|+++.. .|.++|++++++|+++.
T Consensus 382 ~p~---~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 382 TLN---GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp CTT---CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred cCC---CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 322 4887764 45667999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=180.14 Aligned_cols=287 Identities=14% Similarity=0.074 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-CC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G~----------- 206 (476)
+...+++++++++++ +. ..++||+|||+|+..++.+++...+++.|++.+++|..+...+... |.
T Consensus 95 ~~~~~l~~~la~~~~-~~--~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 171 (434)
T 3l44_A 95 ALEVKFAKMLKEAMP-AL--DKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 171 (434)
T ss_dssp HHHHHHHHHHHHHCT-TC--SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred HHHHHHHHHHHHhCC-CC--CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence 455567777888876 32 3599999999999999998876446677877777654432222211 21
Q ss_pred --------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 207 --------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
++..+|.+ |+++|+++|++......+|+++...+++|.+.| +++|.++|++||+ ++|+
T Consensus 172 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~i-----llI~ 241 (434)
T 3l44_A 172 GVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGA-----LVIY 241 (434)
T ss_dssp TCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTC-----EEEE
T ss_pred CCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 23344433 899999999854333456777666777888887 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|.++ ... ... ..+... ..|+++++ |.+++|+++|++++++++++.+........ .++- ...++.
T Consensus 242 DEv~~g~-~~g-~~~-~~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~i~~~~~~~~~~~~------~~t~-~~~~~a 309 (434)
T 3l44_A 242 DEVITAF-RFM-YGG-AQDLLGVTPDLTALG--KVIGGGLPIGAYGGKKEIMEQVAPLGPAYQ------AGTM-AGNPAS 309 (434)
T ss_dssp ECTTTTT-TSS-SSC-HHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHTTBTTTSSBCC------CCTT-TTCHHH
T ss_pred eccccce-ecc-ccH-HHHHcCCCCCeeehh--hhhcCCcCeeeEEEcHHHHHhhccCCCccc------CCCC-CcCHHH
Confidence 9999875 221 110 001111 25666554 888889999999999888766543211110 1111 112344
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecC-------------Cc---HHHh--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERP-------------QD---EEFV-- 411 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~-------------~~---~~~~-- 411 (476)
+.+++..+....-++.+++..++.+++++.|++. +.....+...+++.+... +. ..+.
T Consensus 310 ~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 3l44_A 310 MASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKL 389 (434)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHH
Confidence 4444433321001455666677777777777663 443333333344444331 11 1121
Q ss_pred ---hceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 412 ---RRWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 412 ---~~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++..+. .....+|+ +..+|+++|++++++|+++.+++.+
T Consensus 390 l~~~Gv~v~~~~~~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 390 MLQEGVNLAPSKYEAWFL--TTEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHTTEECCSSTTCCEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEeecCCCcEEE--ecccCHHHHHHHHHHHHHHHHHHHh
Confidence 233332 23345665 5678999999999999999887654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-18 Score=177.45 Aligned_cols=285 Identities=13% Similarity=0.020 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH-HHHHHHcC------------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV-FKAARMYR------------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~-~~~~~~~G------------ 205 (476)
+...++.++++++++ +. ..+++|+|||+|+..++.+++...+++.|++.+.+|+.. ..+....|
T Consensus 92 ~~~~~la~~l~~~~~-~~--~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 168 (427)
T 3fq8_A 92 ALENVLAEMVNDAVP-SI--EMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP 168 (427)
T ss_dssp HHHHHHHHHHHHHST-TC--SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCS
T ss_pred HHHHHHHHHHHHhCC-CC--CEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCC
Confidence 677788899999887 33 359999999999999998776533445566555554332 11111111
Q ss_pred -------CeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 206 -------MECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 206 -------~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
..+..+|.+ |+++|++++++.+.++.+|+++...+++|.+.| +++|.++|++||+ ++++
T Consensus 169 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~ 238 (427)
T 3fq8_A 169 GVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-----LLVF 238 (427)
T ss_dssp SSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTC-----EEEE
T ss_pred CCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 124455543 899999999886555668888777888899988 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++ ....... .+... ..|.++++ |.+++++++|+++.++++++.+.....+... .++. ..++.
T Consensus 239 DEv~~g~-~~g~~~~--~~~~~~~~di~t~s--K~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~--~t~~-----~~~~~ 306 (427)
T 3fq8_A 239 DEVITGF-RIAYGGV--QEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAGPMYQA--GTLS-----GNPLA 306 (427)
T ss_dssp ECTTTBT-TTBTTHH--HHHTTCCCSEEEEC--GGGGTTSSCEEEEECHHHHTTBTTTSSBCCC--CTTT-----TCHHH
T ss_pred ecccccc-ccCcchh--hHhcCCCCChhhhh--hhhhCCcceEEEEEcHHHHHhhccCCCcccc--CCCC-----cCHHH
Confidence 9999865 3211100 00011 25766655 9888889999999998887766432211111 1111 12344
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCc----------------HHHh--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQD----------------EEFV-- 411 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~----------------~~~~-- 411 (476)
+++++..+..-.-++..++..++.+++++.|++. +.....+....++.+..+.. ..+.
T Consensus 307 ~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (427)
T 3fq8_A 307 MTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRG 386 (427)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHH
Confidence 4444433311001345666677777777777653 33222222234444543221 1121
Q ss_pred ---hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 ---RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 ---~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++..+...+ ..|++++..+|+++|++++++|+++.++
T Consensus 387 l~~~Gi~v~~~~-~~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 387 MLEQGIYLAPSQ-FEAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHTTEECCSST-TSCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCcEEecCC-CCCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 222222222 2367778889999999999999988754
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-18 Score=172.66 Aligned_cols=284 Identities=11% Similarity=-0.001 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch-HHHHHHHHcC------------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SVFKAARMYR------------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~-S~~~~~~~~G------------ 205 (476)
+...++.+.+++++|.+. ..++++|+||++|+..++.+++.. +++.|++.++++. +...+....|
T Consensus 86 ~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~~~-~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~ 163 (419)
T 2eo5_A 86 IPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVKNT-GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPF 163 (419)
T ss_dssp HHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHTT-SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCC
T ss_pred HHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHHHh-hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCC
Confidence 445667788899999862 235999999999999999987752 3777777776543 4444443322
Q ss_pred -CeEEEEeCCCCCc----------------cCHHHHH-HHHHcCC--CCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 206 -MECVKVDCLISGE----------------IDCADFK-AKLLQNK--DKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 206 -~~v~~v~~~~~g~----------------~D~~~Le-~~l~~~~--~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+++.+|.+.+.+ +|+++|+ +++++.. .++.+|+++...+++|.+.+ +++|.++|+
T Consensus 164 ~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~ 243 (419)
T 2eo5_A 164 MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAK 243 (419)
T ss_dssp CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHH
Confidence 3577888764422 5789999 9987531 22346666544567898766 999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRD 339 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~ 339 (476)
+||+ ++|+|++|.++.... ... .++... ..|++++ .|.++.| +++|+++++++++ .+ .. .+ .
T Consensus 244 ~~~~-----~li~DE~~~~~g~~g-~~~-~~~~~~~~~d~~t~--sK~~~~G~~riG~~~~~~~~~-~~-~~-~~----~ 307 (419)
T 2eo5_A 244 KYGI-----LLVDDEVQMGLGRTG-KLF-AIENFNTVPDVITL--AKALGGGIMPIGATIFRKDLD-FK-PG-MH----S 307 (419)
T ss_dssp HHTC-----EEEEECTTTTTTTTS-SSS-GGGGGTCCCSEEEE--CGGGGTTTSCCEEEEEEGGGC-CC-----------
T ss_pred HcCC-----EEEEeccccCCccCc-chh-hHHhcCCCCCEEEe--cccccCCccceEEEEEchHhh-cC-Cc-cc----C
Confidence 9999 999999998643221 110 011111 2577654 4888778 9999999998765 44 10 00 0
Q ss_pred CcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc---HHHhh----
Q 011842 340 ATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD---EEFVR---- 412 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~---~~~~~---- 412 (476)
.++ +. ..+.+.+++..+. .+++..++..+++++|.+.|++. +..+ ++..+++.+...++ ..+.+
T Consensus 308 ~t~--~~---n~~~~~aa~aal~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~g~~~~i~~~~~~~~~~~~~~l~~ 378 (419)
T 2eo5_A 308 NTF--GG---NALACAIGSKVID--IVKDLLPHVNEIGKIFAEELQGL-ADDV-RGIGLAWGLEYNEKKVRDRIIGESFK 378 (419)
T ss_dssp -CC--CC---CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTS-SSEE-EEETTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCC--CC---CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-hhhe-EeeeEEEEEEEecCccHHHHHHHHHH
Confidence 111 11 2344444444431 12337788888999999999876 2222 33345666665321 11322
Q ss_pred -ceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 413 -RWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 -~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+..+. ...+.+|++++..+|++++++++++|+++.++
T Consensus 379 ~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 379 RGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp TTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 23332 33578999988899999999999999988654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-18 Score=176.46 Aligned_cols=291 Identities=10% Similarity=0.029 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-H----------HcCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-R----------MYRM 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~----------~~G~ 206 (476)
.++++++.++++++++ +. ..+++|+||++|+..++.+++...+++.|++.+++|..+...+ . ..|+
T Consensus 96 ~~~~~~la~~l~~~~~-~~--~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~ 172 (453)
T 2cy8_A 96 HPLEVRWAERIVAAFP-SI--RKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV 172 (453)
T ss_dssp CHHHHHHHHHHHHHCT-TC--SEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC-------------------------
T ss_pred CHHHHHHHHHHHhhCC-CC--CEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence 3889999999999986 33 3599999999999999998764324455666666655332211 1 1233
Q ss_pred ------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEec
Q 011842 207 ------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDG 276 (476)
Q Consensus 207 ------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~ 276 (476)
.+..++. .|+++|+++|++...++.+|+++...+++|.+.| +++|.++|++||+ +|++|+
T Consensus 173 ~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-----~lI~DE 242 (453)
T 2cy8_A 173 LPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-----LFILDE 242 (453)
T ss_dssp ---CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-----EEEEEC
T ss_pred CccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEEec
Confidence 2444443 3899999999753223446666655567898877 9999999999999 999999
Q ss_pred CcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH
Q 011842 277 ALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW 355 (476)
Q Consensus 277 a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~ 355 (476)
+|+++ ... ... ..+... ..|+++ +.|+++.++++|++++++++++.+..... .....++.....++.++
T Consensus 243 v~~g~-~~g-~~~-~~~~~~~~~di~s--~sK~l~~G~~~G~v~~~~~~~~~l~~~~~-----~~~~~~~t~~~n~~~~a 312 (453)
T 2cy8_A 243 VISGF-RVG-NHG-MQALLDVQPDLTC--LAKASAGGLPGGILGGREDVMGVLSRGSD-----RKVLHQGTFTGNPITAA 312 (453)
T ss_dssp TTTTT-TTC-TTH-HHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTSSSCC--------------CCCCHHHHH
T ss_pred Ccccc-ccC-chh-hhHHhCCCCcEEE--EChhhhCCcceEEEechHHHHHHhccccC-----CCceeCCCCCCCHHHHH
Confidence 99865 221 100 011011 257664 45999888999999999887765543100 00001111011234444
Q ss_pred HHHHHhCh-hcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC------------------c----H
Q 011842 356 YTLNRKGY-KGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ------------------D----E 408 (476)
Q Consensus 356 ~~l~~~g~-~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~------------------~----~ 408 (476)
+++..+.. - .++..++..++++++++.|++. ++....++...++.+..+. + .
T Consensus 313 a~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (453)
T 2cy8_A 313 AAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIA 391 (453)
T ss_dssp HHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHH
T ss_pred HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHH
Confidence 33333321 1 2345677777888888888764 5433234444555555442 1 1
Q ss_pred HHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 409 EFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDGK 455 (476)
Q Consensus 409 ~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~~ 455 (476)
.+. +++.+... . |+.++..+|+++|++++++|+++.+++.++|.
T Consensus 392 ~l~~~l~~~Gv~v~~~-~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~~~~~ 440 (453)
T 2cy8_A 392 AMRMALILEGVDIGGR-G--SVFLSAQHEREHVEHLVTTFDRVLDRLADENL 440 (453)
T ss_dssp HHHHHHHHTTEECBTT-T--EEECCTTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCeEEeCC-C--CEEeeccCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 222 22233221 2 34456788999999999999999988877655
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-18 Score=176.09 Aligned_cols=296 Identities=10% Similarity=0.011 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC------CCcEEEecCCCch-HHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHY-SVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~------p~~~Vl~s~~~H~-S~~~~~~~~G~----- 206 (476)
++..++++.++++++.+. ..+++|+|||+|+..++.+++... +++.|++.+++|. +...++...|.
T Consensus 93 ~~~~~l~~~la~~~~~~~--~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 170 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNL--NHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRK 170 (449)
T ss_dssp HHHHHHHHHHHTTSSTTE--EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHhCCCCC--CEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcc
Confidence 566678888888887653 359999999999999998876521 5677777666554 44445555442
Q ss_pred -------eEEEEeCCCCC-----ccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 207 -------ECVKVDCLISG-----EID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 207 -------~v~~v~~~~~g-----~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
.+..++.+... .+| +++|+++|++.. .++.+|+++...+++|.+.| +++|.++|+
T Consensus 171 ~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~ 250 (449)
T 3a8u_X 171 LFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICN 250 (449)
T ss_dssp TTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH
T ss_pred ccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHH
Confidence 35556543211 246 999999997532 23346666655567998888 999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCC
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRD 339 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~ 339 (476)
+||+ ++++|++|.++.... ... .++... ..|++++ .|+++++ +++|++++++++++.+......-....
T Consensus 251 ~~~~-----~li~Dev~~~~g~~g-~~~-~~~~~~~~~di~s~--sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~ 321 (449)
T 3a8u_X 251 QHNI-----LLVFDEVITGFGRTG-SMF-GADSFGVTPDLMCI--AKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVE 321 (449)
T ss_dssp HHTC-----EEEEECTTTTTTTTS-SSS-HHHHHTCCCSEEEE--CGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCS
T ss_pred HhCC-----EEEEeccccCccccC-cch-hhhhcCCCCCEEEE--cccccCCCCceEEEEECHHHHHHhhccCccccccc
Confidence 9999 999999996532111 100 011111 2576644 4988866 789999999887766543210000000
Q ss_pred CcccCCCCChhHHHHHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---CeEeecCCeeEEEEecCCc---H--
Q 011842 340 ATIMGSRNGHAPIFLWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---ISAMLNELSSTVVFERPQD---E-- 408 (476)
Q Consensus 340 ~~~~~sr~~~~~l~~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~iv~f~~~~~---~-- 408 (476)
.....+-. ..++.+.+ +++.+.. ++..++..++.+++++.|++.+ .....++..+++.+..+.. .
T Consensus 322 ~~~~~t~~-~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 397 (449)
T 3a8u_X 322 FPHGYTYS-AHPVACAAGLAALCLLQK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIV 397 (449)
T ss_dssp SCCCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSH
T ss_pred ccccCCCc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccc
Confidence 00011111 12333333 3333322 2467778888899999998743 2111222345555554421 1
Q ss_pred ---HHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 409 ---EFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 409 ---~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++. +++.+...++.+|++++..+|+++|++++++|+++.++
T Consensus 398 ~~~~~~~~l~~~Gv~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 398 RPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp HHHHHHHHHHHHTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCcEEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 232 23333333488999988899999999999999988764
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=176.53 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-----HHcCCeEEEEeC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-----RMYRMECVKVDC 213 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-----~~~G~~v~~v~~ 213 (476)
....++.+.++++.|.+. .+++++|++|+.. +.... .+++.|+++++.|.+....+ +..|++++.++.
T Consensus 67 p~~~~l~~~la~l~g~~~----~~~~~sG~~Ai~~-~~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 139 (400)
T 3nmy_A 67 PTRFAYERCVAALEGGTR----AFAFASGMAATST-VMELL--DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139 (400)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHH-HHTTS--CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCC----EEEecCHHHHHHH-HHHHc--CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence 445566677888888752 7788888998876 33333 38999999999998655443 335999999987
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+ |+++|+++|.+++ .+|++.+++|++|.+.|+++|+++|++||+ ++++|++|+.+... .. +.
T Consensus 140 ~-----d~~~l~~~i~~~~---~~v~~e~~~np~G~~~~l~~i~~la~~~g~-----~livDe~~~~~~~~--~~---~~ 201 (400)
T 3nmy_A 140 T-----DPAAFKAAIRADT---KMVWIETPTNPMLKLVDIAAIAVIARKHGL-----LTVVDNTFASPMLQ--RP---LS 201 (400)
T ss_dssp T-----SHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTHHHHC--CG---GG
T ss_pred C-----CHHHHHHHhccCC---CEEEEECCCCCCCeeecHHHHHHHHHHcCC-----EEEEECCCcccccC--Ch---hh
Confidence 6 8999999997654 488888999999999999999999999999 99999999754331 00 11
Q ss_pred CcccccEEEEcCCCCCCCC-CC-ce-eEEeeh-hhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCP-MP-CG-VQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKE 369 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p-~~-~G-~l~~~~-~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~ 369 (476)
..+|+++.|++|++++| .. .| ++++++ ++.+.+.....+. +.. ..++..|.+++.+ +.+..+
T Consensus 202 --~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~--------g~~--~~~~~a~~~l~~l--~~l~~r 267 (400)
T 3nmy_A 202 --LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI--------GGV--QGPFDSFLALRGL--KTLPLR 267 (400)
T ss_dssp --GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH--------CCB--CCHHHHHHHHHHH--TTHHHH
T ss_pred --cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc--------CCC--CCHHHHHHHHHhH--hHHHHH
Confidence 24899999999999976 23 35 455544 3444442211111 111 2246666666644 567888
Q ss_pred HHHHHHHHHHHHHHHHhcCCe
Q 011842 370 VQKCLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~ 390 (476)
+++..++++++.+.|++.+..
T Consensus 268 ~~~~~~~a~~l~~~L~~~p~v 288 (400)
T 3nmy_A 268 MRAHCENALALAQWLETHPAI 288 (400)
T ss_dssp HHHHHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHHHHHcCCCE
Confidence 899999999999999987654
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=177.18 Aligned_cols=297 Identities=12% Similarity=0.020 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcc--cEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEY--WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~--~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
|..++++++.+|+.+..+...++. ++++|+|+++|+..++.+.....| +.|++++++|..+...++..|++++.+|+
T Consensus 73 G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 151 (405)
T 3k7y_A 73 GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINF 151 (405)
T ss_dssp SCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECC
T ss_pred CcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEec
Confidence 456999999999866544332222 368999999999998887765457 99999999999999999999999999998
Q ss_pred -CC-CCccCHHHHHHHHHcCCCCcEEEEEeeC-CCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 214 -LI-SGEIDCADFKAKLLQNKDKPAIINVNIG-TTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 214 -~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~g-tt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++ ++.+|++.|++++.+..+ ..+++++.+ .|+||.+-+ +++|+++|++|++ |+++|++|..+......
T Consensus 152 ~~~~~~~~d~~~l~~~l~~~~~-~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~-----~vi~De~Y~~l~~~~~~ 225 (405)
T 3k7y_A 152 FDYNLIDINYDLFLNDLRNIPN-GSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKH-----VIIFDIAYQGFGHTNLE 225 (405)
T ss_dssp EETTTTEECHHHHHHHHHHSCS-SCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCC-----EEEEEESCTTTSSSSTT
T ss_pred cccccCCcCHHHHHHHHHhCCC-CeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCe-----EEEEecCcccccCCCcc
Confidence 33 578999999999986321 236667655 799999854 7788999999999 99999999876542111
Q ss_pred -c-CCCCCCc-cc-ccEEEEcCCCCCC-CCCCceeEEe--e-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHH
Q 011842 288 -K-APKVSFK-KP-IGSVSVSGHKFVG-CPMPCGVQIT--R-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLN 359 (476)
Q Consensus 288 -~-~~~~~~~-~~-~Dsi~~s~hK~l~-~p~~~G~l~~--~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~ 359 (476)
. .+...+. .. --++..|+.|.++ +++++|++++ . .++++.+......+.. .... +. ..+.+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~---~~~~q~~~~~ 299 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVR--KFYS-SP---VIHTNRILCQ 299 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHH--TTTS-SC---CHHHHHHHHH
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHh--cccC-CC---cHHHHHHHHH
Confidence 0 0000000 11 1245677889876 8999999864 3 3333322110000000 0000 11 1233333332
Q ss_pred HhC--------hhcHHHHHHHHHHHHHHHHHHHH----hcCC---eEeecCCeeEEEEe-cCCcHHHhhce---eecccC
Q 011842 360 RKG--------YKGFQKEVQKCLRNAHYLKDRLL----DAGI---SAMLNELSSTVVFE-RPQDEEFVRRW---QLACQG 420 (476)
Q Consensus 360 ~~g--------~~g~~~~~~~~~~~a~~l~~~L~----~~g~---~~~~~~~~~iv~f~-~~~~~~~~~~~---~l~~~~ 420 (476)
.+. .+.++++.++..++++++.+.|+ +.|. ..+.++..+.++|. .+. ++...+ .+....
T Consensus 300 ~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~--~~~~~L~~~gV~v~p 377 (405)
T 3k7y_A 300 LLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA--KIAEHLKTHHIYIIN 377 (405)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG--GGTTTTTTTTEECCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH--HHHHHHHHCCEeecC
Confidence 221 12345556777889999999999 7763 23344555444443 322 223222 111111
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+ -|+++. ..++++|+.++++|.++.++
T Consensus 378 ~-~Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 378 N-GRINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp T-SEEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred C-CeEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 1 187664 45789999999999988764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=175.93 Aligned_cols=280 Identities=15% Similarity=0.063 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch-HHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~-S~~~~~~~~G~----------- 206 (476)
+...++.++++++++ .. ..++||+|||+|+..++.+++...+++.|++.+..|+ +...+....+.
T Consensus 93 ~~~~~la~~l~~~~~-~~--~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 169 (429)
T 4e77_A 93 EMEVKMAQLVTDLVP-TM--DMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP 169 (429)
T ss_dssp HHHHHHHHHHHHHST-TC--SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred HHHHHHHHHHHhhCC-CC--CEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence 566677788888886 32 3499999999999999998775434555655555543 33322211111
Q ss_pred --------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 207 --------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
.+..++.+ |+++|++++++....+.+|+++...+..|.+.| +++|.++|++||+ ++|+
T Consensus 170 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~-----lli~ 239 (429)
T 4e77_A 170 GVPTDFAKHTLTCTYN-----DLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGA-----LLII 239 (429)
T ss_dssp TSCGGGGTTEEEECTT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-----EEEE
T ss_pred CCCCccCCceeecCCC-----CHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 22333332 899999999875444456666555666788877 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++ ....... .+... ..|.++++ |.+++++++|+++.++++++.+....... .++.....++.
T Consensus 240 DEv~~g~-r~g~~~~--~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~~~~~l~~~~~~~-------~~~t~~~~~~~ 307 (429)
T 4e77_A 240 DEVMTGF-RVALAGA--QDYYHVIPDLTCLG--KIIGGGMPVGAFGGRREVMNALAPTGPVY-------QAGTLSGNPIA 307 (429)
T ss_dssp EETTTBT-TTBTTCH--HHHTTCCCSEEEEE--GGGGTTSCCEEEEECHHHHTTBTTTSSBC-------C--CCCCCHHH
T ss_pred eccccCc-ccCcchH--HHhcCCCCCeeeec--ccccCCCCeEEEEECHHHHHHhccCCCcc-------ccCCCCCCHHH
Confidence 9999865 3211100 01011 24766554 98888899999999988876654321111 11111112344
Q ss_pred HHHH---HHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCCc-----------------HH
Q 011842 354 LWYT---LNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQD-----------------EE 409 (476)
Q Consensus 354 ~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~~-----------------~~ 409 (476)
++++ ++.+.. ++.+++..++.+++++.|++. ++....+...+++.+..+.+ ..
T Consensus 308 ~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
T 4e77_A 308 MAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKR 384 (429)
T ss_dssp HHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHH
Confidence 4433 443322 345666666777777777653 54333333344555554332 22
Q ss_pred Hh-----hceeecc-cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 410 FV-----RRWQLAC-QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 410 ~~-----~~~~l~~-~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+. ++..+.. ... |++++..+|++||++++++|+++.+
T Consensus 385 ~~~~l~~~Gi~v~~~~~~--~~~~~~~~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 385 FFHLMLEEGVYLAPSAFE--AGFMSLAHSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp HHHHHHHTTEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCeEEeecCCC--CEEEeccCCHHHHHHHHHHHHHHHH
Confidence 22 2222222 223 4445678899999999999998764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-19 Score=181.40 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecC-CCchHHHHHHH----------HcCCe
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASR-ESHYSVFKAAR----------MYRME 207 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~-~~H~S~~~~~~----------~~G~~ 207 (476)
..++++.+++++++|.+..... +++++||+||..++.+... |++.|++++ +.|.++...++ ..|++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~-i~~~sGt~Ai~~al~al~~--~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~ 141 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVR-PQIISGTHAISTALFGILR--PGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG 141 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCB-TTSCSHHHHHHHHHHTTCC--TTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred hhHHHHHHHHHHHhCCCccccc-ceeeCHHHHHHHHHHHhCC--CCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence 3477888899999999753211 1245889999999877655 899999998 89998886664 36999
Q ss_pred EEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEee----CCCccccccCHHHHHHHHHH--hCCCCCceEEEEecCcccc
Q 011842 208 CVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNI----GTTVKGAVDDLDLVIQTLEE--SGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 208 v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~----gtt~tG~id~l~~I~~ia~~--~g~~~~~~~lhvD~a~~g~ 281 (476)
++.++.++++.+|+++|+++|++++ .+|+++. +++++|.+.++++|+++|++ ||+ ++++|++|+.+
T Consensus 142 ~~~v~~~~~~~~d~e~l~~~l~~~t---k~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~-----~livDea~~~~ 213 (431)
T 3ht4_A 142 YNAVPLTEGGLVDFEAVAAAIHSNT---KMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDV-----VVFVDNCYGEF 213 (431)
T ss_dssp EEECCBCTTSSBCHHHHHHHCCTTE---EEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTC-----EEEEECTTCTT
T ss_pred EEEeCCCCCCCcCHHHHHhhcCCCC---eEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCC-----EEEEeCCChhh
Confidence 9999998889999999999997654 4777776 78889999999999999999 999 99999999876
Q ss_pred cccccccCCCCCCcccccEEEEcCCCCCCC---CCCceeEEeehhhhhhhcC--CccccCCCCCcccCCCCChhHHHHHH
Q 011842 282 MMPFVKKAPKVSFKKPIGSVSVSGHKFVGC---PMPCGVQITRMEHINVLSS--NVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 282 ~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~---p~~~G~l~~~~~~~~~l~~--~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
..... . .. ..+|+++.|+||++++ |.+ |+++.++++++.+.. ....+.. . .+..... .|.
T Consensus 214 ~~~~~-~---~~--~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~g~---~-~~~~~~~----~~~ 278 (431)
T 3ht4_A 214 IEEQE-P---CH--VGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGIGA---E-AGASLYS----LQE 278 (431)
T ss_dssp SSSCC-G---GG--TTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTTTT---S-CSCCCSC----SHH
T ss_pred ccCCC-c---cc--cCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCccc---c-cCccHHH----HHH
Confidence 54211 1 11 1379999999999765 444 999998887665532 1111110 0 1111110 111
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-----EEEEecCC
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-----TVVFERPQ 406 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-----iv~f~~~~ 406 (476)
+++. ...+..++++..++++++.+.|++.|+.+ .+..+. ++.+..++
T Consensus 279 ~~~~--l~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~~~~~~~~li~~i~l~~ 330 (431)
T 3ht4_A 279 MYQG--FFLAPHVAGQALKGAIFTAAFLEKLGMNT-SPAWNAPRTDLIQSVQFDD 330 (431)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESCTTSCCSSSCCEEECCC
T ss_pred HHhH--hhhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCCCCCCCccEEEEEEeCC
Confidence 2221 23456788889999999999999999865 332222 56666654
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-18 Score=175.36 Aligned_cols=297 Identities=10% Similarity=-0.029 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHc-CC----
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMY-RM---- 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~-G~---- 206 (476)
.+...++.++++++++.+.+ .++||+||++||..|+.+++.. ..++.|++.+.+|......+..+ |.
T Consensus 96 ~~~~~~la~~l~~~~~~~~~--~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~ 173 (476)
T 3i5t_A 96 TSPAARLAEKIATLTPGDLN--RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNW 173 (476)
T ss_dssp CHHHHHHHHHHHTTSSTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGC
T ss_pred CHHHHHHHHHHHhcCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhc
Confidence 37778899999999875543 4999999999999999999864 23556666666654433333222 21
Q ss_pred --------eEEEEeCCC--CC-ccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 --------ECVKVDCLI--SG-EID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 --------~v~~v~~~~--~g-~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..++... .. ..| +++|+++|.+.. ..+.+|+++...++.|.+.+ +++|.++|++
T Consensus 174 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~ 253 (476)
T 3i5t_A 174 PNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEK 253 (476)
T ss_dssp TTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred cccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 233444221 11 112 789999997532 33457777777888887665 9999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccC-C-CCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc----ccc
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKA-P-KVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV----EYL 335 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~-~-~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~----~yl 335 (476)
||+ ++++|++|.++........ . .+. ...|+++++ |.++.+ +++|++++++++++.+.... .+.
T Consensus 254 ~gi-----llI~DEv~~g~gr~G~~~~~~~~~~--v~pdi~t~s--K~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~ 324 (476)
T 3i5t_A 254 HDI-----LYISDEVVTGFGRCGEWFASEKVFG--VVPDIITFA--KGVTSGYVPLGGLAISEAVLARISGENAKGSWFT 324 (476)
T ss_dssp TTC-----EEEEECTTTTTTTTSSSCHHHHTTC--CCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEEC
T ss_pred cCC-----EEEEEecccCCccccCceeeecccC--CCcchhhhh--hhhcCCCcCeEEEEECHHHHHHHhcCCccccccc
Confidence 999 9999999986532211000 0 111 125777765 999888 89999999998877664321 111
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---CeEeecCCeeEEEEecCCc-----
Q 011842 336 ASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---ISAMLNELSSTVVFERPQD----- 407 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~iv~f~~~~~----- 407 (476)
.. .++. ..++.+.+++..+..-.-++.+++..++.+++++.|++.+ ......+...++.+....+
T Consensus 325 ~~--~t~~-----~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~ 397 (476)
T 3i5t_A 325 NG--YTYS-----NQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRAD 397 (476)
T ss_dssp CC--CTTT-----TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----
T ss_pred cc--CCCC-----cCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccc
Confidence 10 1111 1245555555444211114567777888888999888653 2222223333444443221
Q ss_pred ---------HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 408 ---------EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 408 ---------~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+ .+++.+...++.+|+++...+|+++|++++++|+++.+++.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 398 GTAEDKAFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSA 456 (476)
T ss_dssp CCHHHHHHHHHHHHHHHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHCCCEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 123333334588999888889999999999999999887754
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=177.26 Aligned_cols=283 Identities=13% Similarity=0.049 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch-HHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHY-SVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~-S~~~~~~~~G~----------- 206 (476)
....+++++++++++ +. ..++||+|||+||..++.+++...+++.|++.+.+|. +...+....|.
T Consensus 93 ~~~~~l~~~la~~~~-~~--~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 169 (429)
T 3k28_A 93 EIENKLAKLVIERVP-SI--EIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP 169 (429)
T ss_dssp HHHHHHHHHHHHHST-TC--SEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred HHHHHHHHHHHHhCC-CC--CEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence 445566677888775 22 3499999999999999998876435566666555543 33222222222
Q ss_pred --------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 207 --------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
+++.+|.+ |+++|++++++....+.+|+++...+++|.+.| +++|.++|++||+ ++|+
T Consensus 170 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~-----~li~ 239 (429)
T 3k28_A 170 GVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGA-----LLIF 239 (429)
T ss_dssp TCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTC-----EEEE
T ss_pred CCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 23334433 899999999854334457777766777888888 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|.++ ....... .+... ..|.++++ |.++.++++|++++++++++.+....... .++.....++.
T Consensus 240 DEv~~g~-~~g~~~~--~~~~~~~~di~t~s--K~~~~G~~iG~~~~~~~~~~~~~~~~~~~-------~~~t~~~~~~a 307 (429)
T 3k28_A 240 DEVMTGF-RVAYNCG--QGYYGVTPDLTCLG--KVIGGGLPVGAYGGKAEIMRQVAPSGPIY-------QAGTLSGNPLA 307 (429)
T ss_dssp ECTTTTT-TSSTTHH--HHHHTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTSSBC-------CCCTTTTCHHH
T ss_pred ecccccc-ccCcchH--HHHhCCCCceehhh--hhhcCCCCeEEEEEcHHHHhhhccCCCcc-------ccCCCCCChHH
Confidence 9999765 3211000 00011 25666654 88888899999999988876654321111 11111122455
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC------------c----HHHh--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ------------D----EEFV-- 411 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~------------~----~~~~-- 411 (476)
+.+++..+.... ++.+++..++++++++.|++. +.....+...+++.|.... + ..+.
T Consensus 308 ~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (429)
T 3k28_A 308 MAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYRE 386 (429)
T ss_dssp HHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHH
Confidence 555555543222 678888888889998888774 4322223333444444321 0 1121
Q ss_pred ---hceee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 ---RRWQL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 ---~~~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
++..+ +...+.+|+ +..+|++++++++++|+++.++
T Consensus 387 l~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 387 MVEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp HHHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHHHHHH
Confidence 22333 223455665 5678999999999999988764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=174.17 Aligned_cols=295 Identities=9% Similarity=-0.013 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHH-HHHHHcC------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVF-KAARMYR------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~-~~~~~~G------ 205 (476)
+...++.++++++++.+. ..++||+||++||..++.+++.. -+++.|++.+.+|+... .+....|
T Consensus 95 ~~~~~la~~l~~~~~~~~--~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 172 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGM--SRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHN 172 (460)
T ss_dssp HHHHHHHHHHHHHSCTTE--EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTT
T ss_pred HHHHHHHHHHHhhCCCCc--CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCccccc
Confidence 677788889999876553 35999999999999999998853 24567777666654433 3322222
Q ss_pred ------CeEEEEeCCC-----CCccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHH
Q 011842 206 ------MECVKVDCLI-----SGEID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLE 261 (476)
Q Consensus 206 ------~~v~~v~~~~-----~g~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~ 261 (476)
..+..++... +..++ +++|+++|++.. +.+.+|+++...+++|.+.+ +++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~ 252 (460)
T 3gju_A 173 AFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLK 252 (460)
T ss_dssp TTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred ccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence 1355565321 11233 689999987422 23457777766777888766 999999999
Q ss_pred HhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCC----cccc
Q 011842 262 ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSN----VEYL 335 (476)
Q Consensus 262 ~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~----~~yl 335 (476)
+||+ ++++|++|.++........ .+... ..|+++++ |.++.+ +++|++++++++++.+... ..+.
T Consensus 253 ~~~~-----llI~DEv~~g~gr~g~~~~--~~~~~~~pdi~t~s--K~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~ 323 (460)
T 3gju_A 253 KYDV-----LLVADEVVTGFGRLGTMFG--SDHYGIKPDLITIA--KGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLG 323 (460)
T ss_dssp HTTC-----EEEEECTTTTTTTTSSSCH--HHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred HcCC-----EEEEeccccCCCcccccch--HhhcCCCCCeeeee--hhhcCCCCCeEEEEECHHHHHHHhcccccccccc
Confidence 9999 9999999986532110000 01011 25777655 998877 7999999999877666311 1111
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHH----HhcCCeEeecCCeeEEEEecCCc----
Q 011842 336 ASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRL----LDAGISAMLNELSSTVVFERPQD---- 407 (476)
Q Consensus 336 ~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~g~~~~~~~~~~iv~f~~~~~---- 407 (476)
. ..++.+ .++.+.+++..+..-.-++.+++..++.+++++.| ++.+......+...++.+....+
T Consensus 324 ~--~~t~~~-----~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~ 396 (460)
T 3gju_A 324 H--GWTYSA-----HPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDR 396 (460)
T ss_dssp C--CCTTTT-----CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTT
T ss_pred c--CCCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCcccc
Confidence 0 011111 23444444444321111234455555555555555 44444333333334444443211
Q ss_pred ----------HHHh-----hceeeccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 ----------EEFV-----RRWQLACQ--GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 ----------~~~~-----~~~~l~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+. ++..+... .+.+|++++..+|+++|++++++|+++.++..
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 397 VFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp BCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1111 23333322 38899988889999999999999999987754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-18 Score=175.85 Aligned_cols=290 Identities=9% Similarity=-0.009 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHcC-CCCCcccEEEcCCchhHHHHHHHHHHhhC-----------C-CcEEEecCCCchHHHH-HHHH-
Q 011842 139 QFEVGVLDWFARLWE-LENNEYWGYITNCGTEGNLHGILVGREVF-----------P-DGILYASRESHYSVFK-AARM- 203 (476)
Q Consensus 139 ~le~~~~~~la~l~g-~~~~~~~g~~t~ggt~An~~al~aa~~~~-----------p-~~~Vl~s~~~H~S~~~-~~~~- 203 (476)
+...++.+.++++++ .+. ..++||+|||+||..++.+++... | ++.|++.+++|..... +...
T Consensus 101 ~~~~~la~~la~~~~~~~~--~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~ 178 (449)
T 2cjg_A 101 VAMARFVETFARVLGDPAL--PHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLT 178 (449)
T ss_dssp HHHHHHHHHHHHHHCCTTC--CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTC
T ss_pred HHHHHHHHHHHHhcCCCCC--CEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhc
Confidence 455667777888886 332 359999999999999998776311 2 7788888876644322 1111
Q ss_pred -------cCC-----eEEEEeCCC--CC--------ccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHH
Q 011842 204 -------YRM-----ECVKVDCLI--SG--------EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVI 257 (476)
Q Consensus 204 -------~G~-----~v~~v~~~~--~g--------~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~ 257 (476)
.+. +++.+|.+. .. ..|+++|+++|.+.+.++.+|+++...+++|.+.+ +++|.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~ 258 (449)
T 2cjg_A 179 NTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMR 258 (449)
T ss_dssp CSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHH
T ss_pred CCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHH
Confidence 122 566677653 11 36778899999754334457777665788998777 99999
Q ss_pred HHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccC
Q 011842 258 QTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA 336 (476)
Q Consensus 258 ~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~ 336 (476)
++|++||+ ++++|++|+++.... ... .+.... ..|+++++ |++ ++|++++++++++.+... ++.
T Consensus 259 ~l~~~~g~-----lli~DEv~~g~g~~g-~~~-~~~~~~~~~di~t~s--K~l----~iG~~~~~~~~~~~l~~~--~~~ 323 (449)
T 2cjg_A 259 ELCDEFDA-----LLIFDEVQTGCGLTG-TAW-AYQQLDVAPDIVAFG--KKT----QVCGVMAGRRVDEVADNV--FAV 323 (449)
T ss_dssp HHHHHTTC-----EEEEECTTTTTTTTS-SSS-THHHHTCCCSEEEEC--GGG----SSEEEEECGGGGGSTTCT--TTS
T ss_pred HHHHHCCc-----EEEEeccccCCCccC-cce-eecccCCCceEEEec--Ccc----cEEEEEECHHHhhhhhhc--ccC
Confidence 99999999 999999998643221 110 011111 25777654 887 589999998876543210 110
Q ss_pred C--CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CC-eEeecCCeeEEEEecCCc--
Q 011842 337 S--RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GI-SAMLNELSSTVVFERPQD-- 407 (476)
Q Consensus 337 ~--~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~-~~~~~~~~~iv~f~~~~~-- 407 (476)
. ...++.+ ..+.+.+++..+..-.-++..++..++++++++.|++. +. .....+..+++.+..+..
T Consensus 324 ~~~~~~t~~~-----n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 398 (449)
T 2cjg_A 324 PSRLNSTWGG-----NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD 398 (449)
T ss_dssp TTSSCCSSSS-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHH
T ss_pred CcccccCCCC-----CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHH
Confidence 0 0011211 23444444333311001346677788889999998864 32 222333445666766542
Q ss_pred -HHHh-----hceee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 408 -EEFV-----RRWQL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 408 -~~~~-----~~~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
.++. +++.+ +...+.+|++++..+|+++|+++++.|+++.+++
T Consensus 399 ~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 399 RDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp HHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2222 23333 2335799999999999999999999999887653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-18 Score=176.01 Aligned_cols=293 Identities=11% Similarity=0.070 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHH-HHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVF-KAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~-~~~~~~G~----- 206 (476)
+...++.++++++++.+.+ .++|++||++||..|+.+++.. -+++.|++.+.+|.... .+....|.
T Consensus 99 ~~~~~lae~l~~~~~~~~~--~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~ 176 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLN--HVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHA 176 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEE--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCC--EEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhcc
Confidence 6677788889998866433 4999999999999999999863 13556666665554332 22222221
Q ss_pred ------eEEEEeCCC-----CCccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 ------ECVKVDCLI-----SGEID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 ------~v~~v~~~~-----~g~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
.+..++... ++ +| +++|+++|.+.. .++.+|+++...++.|.+.| +++|.++|++
T Consensus 177 ~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~ 255 (472)
T 3hmu_A 177 QSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDK 255 (472)
T ss_dssp TTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHH
T ss_pred ccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHH
Confidence 345555321 11 34 788999987432 23457777766778888887 9999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDA 340 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~ 340 (476)
||+ ++++|++|.++........ .... ...|+++++ |.++.+ +++|++++++++++.+.. ..+.. ..
T Consensus 256 ~gi-----llI~DEv~~gfgr~G~~~a--~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~i~~~~~~-~~~~~--~~ 323 (472)
T 3hmu_A 256 YDI-----LLIADEVICGFGRTGNWFG--TQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGK-DEFNH--GY 323 (472)
T ss_dssp TTC-----EEEEECTTTTTTTTSSSCH--HHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTT-SCBCC--CC
T ss_pred cCC-----EEEEEccccCCcccCccch--hHHhCCCCceeeec--hhhhcCCcceEEEEECHHHHHhccc-CCccc--cC
Confidence 999 9999999986532110000 0001 126777765 988766 799999999988777621 11110 01
Q ss_pred cccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH-HHHHHHHHHHHhc---CCeEeecCCeeEEEEecCCc---------
Q 011842 341 TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL-RNAHYLKDRLLDA---GISAMLNELSSTVVFERPQD--------- 407 (476)
Q Consensus 341 ~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~~~L~~~---g~~~~~~~~~~iv~f~~~~~--------- 407 (476)
++.+ .++.+.+++..+..-.-++.+++.. ++.+++++.|++. +......+...++.|....+
T Consensus 324 t~~~-----np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~ 398 (472)
T 3hmu_A 324 TYSG-----HPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFAS 398 (472)
T ss_dssp TTTT-----CHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSS
T ss_pred CCCC-----CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccc
Confidence 1121 2445555554442111134567777 7888888888764 22222223334444443211
Q ss_pred ------HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 ------EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 ------~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+ .+++.+...++.+|++....+|+++||+++++|+++.++..
T Consensus 399 ~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 399 EPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp CTTHHHHHHHHHHHHTTBCCEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 12333333348999998889999999999999998876553
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=176.30 Aligned_cols=283 Identities=15% Similarity=0.087 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH--------------HHc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA--------------RMY 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~--------------~~~ 204 (476)
+++.++.++++++++ .. ..+++|+|||+|+..++.++|...+++.|++.+++|......+ ...
T Consensus 96 ~~~~~l~~~la~~~~-~~--~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 172 (434)
T 2epj_A 96 EAEVLLAEKILGYVK-RG--GMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSA 172 (434)
T ss_dssp HHHHHHHHHHHHHHC-TT--CEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESST
T ss_pred HHHHHHHHHHHHhCC-CC--CEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCC
Confidence 666778888888884 22 2489999999999999998764334555555555554322111 012
Q ss_pred CC------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 205 RM------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 205 G~------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
|+ ++..+|.+ |+++|+++|++...++.+|+++...+++|.+.| +++|.++|++||+ ++++
T Consensus 173 g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~-----~lI~ 242 (434)
T 2epj_A 173 GVPEAVARLTLVTPYN-----DVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGA-----LLIL 242 (434)
T ss_dssp TCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTC-----EEEE
T ss_pred CCCCcccCceEecCCC-----CHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCC-----EEEE
Confidence 43 35666653 899999999753223456766655677899888 9999999999999 9999
Q ss_pred ecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|++|+++ ... ... ..+... ..|++++ +|+++.++++|++++++++++.+.....+.. ..++. ..++.
T Consensus 243 DEv~~g~-~~g-~~~-~~~~~~~~~di~s~--sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~--~~t~~-----~~~~~ 310 (434)
T 2epj_A 243 DEVVTGF-RLG-LEG-AQGYFNIEGDIIVL--GKIIGGGFPVGAVAGSREVMSLLTPQGKVFN--AGTFN-----AHPIT 310 (434)
T ss_dssp EETTTTT-TSS-TTH-HHHHHTCCCSEEEE--EGGGGTTSSCEEEEECHHHHTTBTTTSSBCC--CCTTT-----TCHHH
T ss_pred Ecchhce-eCC-cch-hhHHhCCCCCeeee--cchhcCCcceeeeeecHHHHHhhccCCCccc--CCCCC-----cCHHH
Confidence 9999865 211 100 000001 2576644 5988888899999999887765543111100 01111 12333
Q ss_pred HHH---HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC----------------cHHH
Q 011842 354 LWY---TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ----------------DEEF 410 (476)
Q Consensus 354 ~~~---~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~----------------~~~~ 410 (476)
+.+ +++.+.. ++..++..++++++.+.|++. ++....++..+++.+..+. ...+
T Consensus 311 ~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (434)
T 2epj_A 311 MAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKL 387 (434)
T ss_dssp HHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHH
Confidence 333 3333322 345677778888888888774 6533223334455555432 1122
Q ss_pred h-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 411 V-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 411 ~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. +++.+...+ ..|++++..+|+++|++++++|+++.+++
T Consensus 388 ~~~l~~~Gv~v~~~~-~~~~~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 388 HEEMLRRGVFIAPSN-LEAVFTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHTTEECCSST-TSCEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeccC-CCcEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 2 222232222 12455667889999999999999987765
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=173.51 Aligned_cols=295 Identities=11% Similarity=0.004 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------CCCcEEEecCCCchHHHHHHHHcCC-----
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRM----- 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~p~~~Vl~s~~~H~S~~~~~~~~G~----- 206 (476)
.+...++.++++++++.+.+ .++||+||++||..++.+++.. .+++.|++.+++|......+..++.
T Consensus 93 ~~~~~~la~~l~~~~~~~~~--~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 170 (459)
T 4a6r_A 93 HPAVVELSSLLAEVTPAGFD--RVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMH 170 (459)
T ss_dssp CHHHHHHHHHHHHHSCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC
T ss_pred CHHHHHHHHHHHHhCCCCCC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhc
Confidence 36778889999999877544 4999999999999999998863 1467777777766544333333221
Q ss_pred --------eEEEEeCCC-----CCccC--------HHHHHHHHHcCC-CCcEEEEEeeCCCccccccC----HHHHHHHH
Q 011842 207 --------ECVKVDCLI-----SGEID--------CADFKAKLLQNK-DKPAIINVNIGTTVKGAVDD----LDLVIQTL 260 (476)
Q Consensus 207 --------~v~~v~~~~-----~g~~D--------~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~----l~~I~~ia 260 (476)
.+..++... +. +| +++|+++|.+.. ..+.+|+++...++.|.+.+ +++|.++|
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~ 249 (459)
T 4a6r_A 171 EQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERIC 249 (459)
T ss_dssp ---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHH
Confidence 344455321 12 44 889999987532 23456767666777788777 99999999
Q ss_pred HHhCCCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCC
Q 011842 261 EESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASR 338 (476)
Q Consensus 261 ~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~ 338 (476)
++||+ ++++|++|.++........ ..... ..|+++++ |.++.+ +++|++++++++++.+.....+..
T Consensus 250 ~~~~~-----llI~DEv~~g~gr~G~~~~--~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~-- 318 (459)
T 4a6r_A 250 RKYDV-----LLVADEVICGFGRTGEWFG--HQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLIAGGDFNH-- 318 (459)
T ss_dssp HHTTC-----EEEEECTTTTTTTTSSSSH--HHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHCTTHH--
T ss_pred HHcCC-----EEEEeccccCCCcccccch--HhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhhcCCCccc--
Confidence 99999 9999999986532211000 01111 25777765 888766 799999999887766531101100
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH-HHHHHHHHHH----HhcCCeEeecCCeeEEEEecCCc------
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL-RNAHYLKDRL----LDAGISAMLNELSSTVVFERPQD------ 407 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~-~~a~~l~~~L----~~~g~~~~~~~~~~iv~f~~~~~------ 407 (476)
..++.++ ++.+.+++..+..-.-++.+++.. ++.+++++.| .+.+......+..+++.+....+
T Consensus 319 ~~t~~~~-----~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 393 (459)
T 4a6r_A 319 GFTYSGH-----PVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKREL 393 (459)
T ss_dssp HHHHCSC-----HHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBC
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccccc
Confidence 0111211 344444444432101123445555 5556666665 33343333333334444443211
Q ss_pred --------HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 408 --------EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 408 --------~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+ .++..+...++.+|++++..+|+++|+.++++|+++.++..
T Consensus 394 ~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 394 FPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp CSSTTHHHHHHHHHHHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHCCeEEecCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 12333333358999998889999999999999999887764
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-17 Score=169.55 Aligned_cols=291 Identities=14% Similarity=0.081 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-C-----------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-R----------- 205 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G----------- 205 (476)
.+.+.++.++++++++.+. ....+||+|||+||..|+.+++....++.|++.+.+|......+..+ +
T Consensus 103 ~~~~~~la~~l~~~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~ 181 (451)
T 3oks_A 103 YEGYVAVCEQLNRLTPVRG-DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGP 181 (451)
T ss_dssp CHHHHHHHHHHHHHSSCCS-SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCS
T ss_pred CHHHHHHHHHHHHhCCcCC-CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCC
Confidence 3677788899999987442 23599999999999999999886435567777666654433332222 1
Q ss_pred --CeEEEEeCCCC-------------CccCHHHHHHHHHcC--CCCcEEEEEeeCCCccccccC----HHHHHHHHHHhC
Q 011842 206 --MECVKVDCLIS-------------GEIDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESG 264 (476)
Q Consensus 206 --~~v~~v~~~~~-------------g~~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g 264 (476)
..+..+|.... +.-+++.+++.|++. .+.+.+|+++...++.|.+.+ +++|.++|++||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g 261 (451)
T 3oks_A 182 FAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKND 261 (451)
T ss_dssp CCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcC
Confidence 14566665411 112456666666541 223445655544556677766 999999999999
Q ss_pred CCCCceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCccc
Q 011842 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIM 343 (476)
Q Consensus 265 ~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~ 343 (476)
+ ++++|++|.++.... ... ..+... ..|+++++ |.++.++++|++++++++++.+.... + ..++.
T Consensus 262 ~-----~lI~DEv~~g~g~~g-~~~-~~~~~~~~pdi~t~s--K~l~~G~~iG~v~~~~~~~~~~~~~~-~----~~t~~ 327 (451)
T 3oks_A 262 V-----VFIADEVQTGFARTG-AMF-ACEHEGIDPDLIVTA--KGIAGGLPLSAVTGRAEIMDSPHVSG-L----GGTYG 327 (451)
T ss_dssp C-----EEEEECTTTTTTTTS-SSS-GGGGGTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTCSCTTS-B----CCSSS
T ss_pred C-----EEEEEecccCCCccc-cch-hhhhcCCCCCeeeeh--hhhhCCcceEEEEECHHHHhhhcCCC-c----CCCCC
Confidence 9 999999998653221 110 011111 25777554 99888999999999988776553211 0 01111
Q ss_pred CCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEec-------CCc---HH
Q 011842 344 GSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFER-------PQD---EE 409 (476)
Q Consensus 344 ~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~-------~~~---~~ 409 (476)
..++.+++++..+..-.-++.+++..++.+++++.|++. +......+...++.+.. +.. ..
T Consensus 328 -----~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 402 (451)
T 3oks_A 328 -----GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKA 402 (451)
T ss_dssp -----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHH
Confidence 124555554444421111245566666777777776653 43332233233444432 221 11
Q ss_pred H-----hhceee-ccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 410 F-----VRRWQL-ACQ--GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 410 ~-----~~~~~l-~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+ .++..+ ++. ++.+|++++..+|+++|++++++|+++.+
T Consensus 403 ~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 403 LCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp HHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2 123333 222 37899999999999999999999998765
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=171.79 Aligned_cols=292 Identities=14% Similarity=0.073 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH-HHHHHcCC----------
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF-KAARMYRM---------- 206 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~-~~~~~~G~---------- 206 (476)
.+...+++++++++++.+. ...++||+|||+||..|+.+++...+++.|++.+.+|.... .+..+.+.
T Consensus 106 ~~~~~~la~~l~~~~~~~~-~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 184 (453)
T 4ffc_A 106 YEQYVQVAELLNALTPGDH-DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGP 184 (453)
T ss_dssp CHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CHHHHHHHHHHHHhCCCCC-CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCC
Confidence 3777788999999987542 23599999999999999998875435566666666654333 33222221
Q ss_pred ---eEEEEeCCC----CCccC--------HHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCC
Q 011842 207 ---ECVKVDCLI----SGEID--------CADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQ 267 (476)
Q Consensus 207 ---~v~~v~~~~----~g~~D--------~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~ 267 (476)
.+..+|... ...++ ++.|++.+.. +.+.+|+++...++.|.+.+ +++|.++|++||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~--~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~-- 260 (453)
T 4ffc_A 185 FAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA--QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV-- 260 (453)
T ss_dssp CCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG--GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC--
T ss_pred CCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC--CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC--
Confidence 456666541 11122 3444444422 22345555444555566655 9999999999999
Q ss_pred CceEEEEecCcccccccccccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCC
Q 011842 268 DRFYIHCDGALFGLMMPFVKKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSR 346 (476)
Q Consensus 268 ~~~~lhvD~a~~g~~~~~~~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr 346 (476)
++++|++|.++.... ... ..+... ..|+++++ |.++.++++|++++++++++.+..... ..++.+
T Consensus 261 ---llI~DEv~~g~g~~g-~~~-a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~i~~~~~~~~~-----~~t~~~-- 326 (453)
T 4ffc_A 261 ---VFIADEVQTGFARTG-AWF-ASEHEGIVPDIVTMA--KGIAGGMPLSAVTGRAELMDAVYAGGL-----GGTYGG-- 326 (453)
T ss_dssp ---EEEEECTTTTTTTTS-SSS-THHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTTSS-----CCSSSS--
T ss_pred ---EEEEecCccCCCccc-ccc-hhhhcCCCcchHhhh--hhhcCCcCeEEEEECHHHHhhhcccCc-----CCCCCc--
Confidence 999999997653221 110 011111 25777654 988888999999999887765532110 011121
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeEEEEec-------CCc---HHH--
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSSTVVFER-------PQD---EEF-- 410 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~iv~f~~-------~~~---~~~-- 410 (476)
.++.+.+++..+....-++.+++..++.+++++.|++ .+..........++.+.. +.. ..+
T Consensus 327 ---~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (453)
T 4ffc_A 327 ---NPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAA 403 (453)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHH
Confidence 2344544444432111124556666666677766655 343322223233444432 111 111
Q ss_pred ---hhceee-ccc--CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 411 ---VRRWQL-ACQ--GNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 411 ---~~~~~l-~~~--~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.++..+ +.. ++.+|++++..+|+++|++++++|+++.+++.
T Consensus 404 ~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 404 EALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp HHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 123333 222 37899999999999999999999999987654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=175.05 Aligned_cols=303 Identities=10% Similarity=-0.032 Sum_probs=187.9
Q ss_pred hHHHHHHHH-HHHHHHcCC--CC-CcccEEEcCCchhHHHHHHHHHH--h-hCCCcEEEecCCCchHHHHHHHHc--CCe
Q 011842 137 SRQFEVGVL-DWFARLWEL--EN-NEYWGYITNCGTEGNLHGILVGR--E-VFPDGILYASRESHYSVFKAARMY--RME 207 (476)
Q Consensus 137 ~~~le~~~~-~~la~l~g~--~~-~~~~g~~t~ggt~An~~al~aa~--~-~~p~~~Vl~s~~~H~S~~~~~~~~--G~~ 207 (476)
..++++++. .|+.+..+. +. +..++++|+|+++++..++.+.. . ..||+.|++++++|..+..++.+. |++
T Consensus 140 ~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~ 219 (546)
T 2zy4_A 140 MLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALE 219 (546)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCE
T ss_pred CHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcE
Confidence 346666644 566665543 11 23569999999999998887632 1 138999999999999999887665 578
Q ss_pred EEEEeCCCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHH--HHhCCCCCceEEEEecCccc
Q 011842 208 CVKVDCLIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTL--EESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 208 v~~v~~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia--~~~g~~~~~~~lhvD~a~~g 280 (476)
++.++++++ +.+|+++|++.+..+ +.+|++++++|+||.+-+ +++|+++| ++||+ +|++|++|+.
T Consensus 220 ~~~v~~~~~~~~~~d~~~l~~~~~~~---~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~-----~ii~De~y~~ 291 (546)
T 2zy4_A 220 EVAINADPSLNWQYPDSELDKLKDPA---IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDL-----MILTDDVYGT 291 (546)
T ss_dssp EEEEECBGGGTTBCCHHHHGGGGSTT---EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTC-----EEEEECTTGG
T ss_pred EEEEecCcccCCCCCHHHHHHhhCCC---CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCc-----EEEEeCcchh
Confidence 899998653 469999998876433 347777899999999866 66788888 77899 9999999986
Q ss_pred ccccccccCCCCCCcccccEEEEcCCCCCC-CCCCceeEEeehh-hhhhhcCC----------ccccC---C--------
Q 011842 281 LMMPFVKKAPKVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRME-HINVLSSN----------VEYLA---S-------- 337 (476)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~-~~~~l~~~----------~~yl~---~-------- 337 (476)
+... ..+........+++..|++|+++ +++++|+++++++ +++.+... ..|-. .
T Consensus 292 ~~~~---~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~ 368 (546)
T 2zy4_A 292 FADD---FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFID 368 (546)
T ss_dssp GSTT---CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHH
T ss_pred hccc---CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhh
Confidence 6532 11111111124678889999985 6789999999875 55443110 00100 0
Q ss_pred ------CC-CcccCCCCChhHHHHHH-----HHHHh--ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCee-EEEE
Q 011842 338 ------RD-ATIMGSRNGHAPIFLWY-----TLNRK--GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSS-TVVF 402 (476)
Q Consensus 338 ------~~-~~~~~sr~~~~~l~~~~-----~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-iv~f 402 (476)
.. ....+. +...+.+.+ ....+ +..-.++..+.+.++++++.+.|. .++. ..++..+ ++.+
T Consensus 369 ~~~~~~~~~~~~~~~--~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~-~~~~~~~~~l~~ 444 (546)
T 2zy4_A 369 RLVADSRAVALNHTA--GLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPL-RDENAVDYYTLI 444 (546)
T ss_dssp HHHHHTTTTTTGGGC--SSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCC-CCTTBCCSEEEE
T ss_pred hhhhhhHHHHhhccC--CCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCcc-cCCCCeeEEEEE
Confidence 00 000000 011122221 11222 122345556666667777777774 4432 2233444 3444
Q ss_pred ecCC-------------------cHHHh------hceee-cc-----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 403 ERPQ-------------------DEEFV------RRWQL-AC-----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 403 ~~~~-------------------~~~~~------~~~~l-~~-----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
..+. +.++. .+..+ +. ..+.+|+++. ..++++++++++.|+++.++++
T Consensus 445 ~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 445 DLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp EHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 4321 11111 12222 21 2367999886 4589999999999999988887
Q ss_pred hcCC
Q 011842 452 EDGK 455 (476)
Q Consensus 452 ~~~~ 455 (476)
+.++
T Consensus 524 ~~~~ 527 (546)
T 2zy4_A 524 AEYS 527 (546)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 6555
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=172.16 Aligned_cols=269 Identities=11% Similarity=0.028 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCc----EEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 138 RQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDG----ILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~----~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
.++++++.+|+. ..|.+.++ .++++|+|+++++..++.+..+ ||+ .|++++++|.++...++..|++++.++
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~--~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 147 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALSS--LARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWE 147 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH--TSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEE
T ss_pred HHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhcC--CCCCCcceEEEcCCCchhHHHHHHHcCCeEEEec
Confidence 689999998887 45765433 4699999999999999888876 888 999999999999999999999999888
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC--CCCCceEEEEecCcccccccccccCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG--FTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g--~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
++.++ ++ . .++.+|++++++|+||.+.+ +|++ ++|+ + ++++|++|+.. +.+
T Consensus 148 ~d~~~-l~--------~---~~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~-----~ii~De~y~~~------~~~ 200 (391)
T 3bwn_A 148 GDAWG-FD--------K---KGPYIELVTSPNNPDGTIRE--TVVN--RPDDDEA-----KVIHDFAYYWP------HYT 200 (391)
T ss_dssp EESTT-CC--------C---CSCEEEEEESSCTTTCCCCC--CCC-------CCC-----EEEEECTTCST------TTS
T ss_pred CCHHH-cC--------C---CCCEEEEECCCCCCCchhHH--HHHH--HhhcCCC-----EEEEeCCCCCC------CCC
Confidence 76432 21 1 23457778999999999976 4544 2255 8 99999999731 111
Q ss_pred CCCCcccccEEEEcCCCCCC-CCCCceeEEe-ehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC------
Q 011842 291 KVSFKKPIGSVSVSGHKFVG-CPMPCGVQIT-RMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG------ 362 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~-~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g------ 362 (476)
.+......+++..|++|.++ .++++|++++ ++++++.+.....+.. .+. ..+.++++...+.
T Consensus 201 ~l~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~-------~~~---~~~~q~a~~~~l~~~~~~~ 270 (391)
T 3bwn_A 201 PITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNS-------IGV---SKESQVRTAKILNVLKETC 270 (391)
T ss_dssp CCCCCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHH-------SSC---CHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccc-------cCC---CHHHHHHHHHHHhCcchhc
Confidence 12222235788899999885 6789999998 6666655533222211 111 1233333333331
Q ss_pred ------hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-Ce-------------eEEEEecCCcH---HHh--hceeec
Q 011842 363 ------YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LS-------------STVVFERPQDE---EFV--RRWQLA 417 (476)
Q Consensus 363 ------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~-------------~iv~f~~~~~~---~~~--~~~~l~ 417 (476)
.+.+++..+++.++++++.+.|++.+...+..+ .+ ..+.+..+..+ ... ++..+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~ 350 (391)
T 3bwn_A 271 KSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSR 350 (391)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECE
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEc
Confidence 234677888888999999999998743333222 22 24455554321 122 223332
Q ss_pred ----c--cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 418 ----C--QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 418 ----~--~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+ ..+.+|+++. +++++|+++++.|+++.+
T Consensus 351 pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 351 AGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp EGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred cCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 1 2468999887 489999999999987653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=168.20 Aligned_cols=280 Identities=14% Similarity=0.087 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH-H-------------Hc
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA-R-------------MY 204 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~-~-------------~~ 204 (476)
+++.++.++++++++ +. ..+++|+||++|+..++.++|...+++.|++.+++|+.+...+ . ..
T Consensus 92 ~~~~~l~~~l~~~~~-~~--~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 168 (424)
T 2e7u_A 92 PLEVALAKKVKRAYP-FV--DLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA 168 (424)
T ss_dssp HHHHHHHHHHHHHCT-TC--CEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred HHHHHHHHHHHHhCC-CC--CEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence 667778888888885 32 3489999999999999998654334455666666554432211 1 12
Q ss_pred CC------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 205 RM------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 205 G~------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
|+ ++..+|.+ |+++|++++++..+++.+|+++...+++|.+.| +++|.++ ++||+ ++++
T Consensus 169 g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~-----~lI~ 237 (424)
T 2e7u_A 169 GVPEEYAKLTLVLEYN-----DPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGV-----LLIA 237 (424)
T ss_dssp TCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTC-----EEEE
T ss_pred CCCCccCCceEeCCCC-----CHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCC-----EEEE
Confidence 32 35555543 899999999753223346666544555898877 9999999 99999 9999
Q ss_pred ecCcccccccccccCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHH
Q 011842 275 DGALFGLMMPFVKKAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 275 D~a~~g~~~~~~~~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l 352 (476)
|++|+++ ....... .+.. ...|++ +++|+++.++++|++++++++++.+.... .+.. .++. ..++
T Consensus 238 DEv~~g~-~~g~~~~--~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~---~t~~-----~~~~ 304 (424)
T 2e7u_A 238 DEVMTGF-RLAFGGA--TELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQA---GTLS-----GNPL 304 (424)
T ss_dssp ECTTTTT-TSSTTHH--HHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCC---CTTC-----SCHH
T ss_pred ecCcccc-ccchhHH--HHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccCCcccC---CCCC-----CCHH
Confidence 9999865 2211000 0100 125765 45699988899999999988776654311 1110 1111 1233
Q ss_pred HHHHHHHHhChhc-HHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC-------------c---HHHh
Q 011842 353 FLWYTLNRKGYKG-FQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ-------------D---EEFV 411 (476)
Q Consensus 353 ~~~~~l~~~g~~g-~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~-------------~---~~~~ 411 (476)
.+.+++..+..-. .++..++..++++++++.|++. ++....++..+++.+..+. . ..+.
T Consensus 305 ~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 305 AMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 4433333331111 1456778888888898888774 6532223334455565543 0 1122
Q ss_pred h-----ceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 412 R-----RWQLACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 412 ~-----~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+ ++.+...+ ..|+.++..+|+++|++++++|+++
T Consensus 385 ~~l~~~Gv~v~~~~-~~~~~~~~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 385 HGLLDRGIYWPPSN-FEAAFLSVAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHTTTEECCSSS-SSCEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccC-CCceEeeccCCHHHHHHHHHHHHHh
Confidence 1 22222221 1245566788999999999999865
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=160.43 Aligned_cols=302 Identities=9% Similarity=0.009 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhh--CCCcEEEecCCCchHHHHHHHHcCCeE-EE
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARMYRMEC-VK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~--~p~~~Vl~s~~~H~S~~~~~~~~G~~v-~~ 210 (476)
|..++++++.+++ +|-. ......+.|.|||.|...++..+... .|++.|+++++++.++...++..|++. ..
T Consensus 88 G~p~lr~aia~~~---~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~ 164 (420)
T 4h51_A 88 GYQPFIDEAVKII---YGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICT 164 (420)
T ss_dssp CCHHHHHHHHHHH---HC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEE
T ss_pred ChHHHHHHHHHHh---cCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEe
Confidence 5668888887765 3322 12223556899999998887766543 389999999999999999999999974 44
Q ss_pred EeCC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
.+.. .++.+|.+.+.+.+...+++..+++.+.+.|+||.+ +.+++|+++|+++++ ++++|++|.++.+..
T Consensus 165 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~-----~~~~D~~Y~~~~~~~ 239 (420)
T 4h51_A 165 YAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHH-----QVFFDSAYQGYASGS 239 (420)
T ss_dssp EECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTTTTTSC
T ss_pred eccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCc-----eEeeehhhhhhccCC
Confidence 4432 356789999999998776666677788889999998 458899999999999 999999998765432
Q ss_pred cccCC--CCCC-ccc-ccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 286 VKKAP--KVSF-KKP-IGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 286 ~~~~~--~~~~-~~~-~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
..... ...+ ... --+++.|+.| +.+.+|++|++.+..+..+........+.....+...+. +...+..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~---p~~~a~~~~~~ 316 (420)
T 4h51_A 240 LDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCP---PAHGARLAHLI 316 (420)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSC---CHHHHHHHHHH
T ss_pred cccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcc---hHHHHHHHHHH
Confidence 11110 0000 011 1234456667 667899999999876533221110000000000000111 12222222222
Q ss_pred hC--------hhcHHHHHHHHHHHHHHHHHHHHhcCCeE---eecCCeeEEEEecCCcH--HHhhceee--cccCCEEEE
Q 011842 361 KG--------YKGFQKEVQKCLRNAHYLKDRLLDAGISA---MLNELSSTVVFERPQDE--EFVRRWQL--ACQGNIAHV 425 (476)
Q Consensus 361 ~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv~f~~~~~~--~~~~~~~l--~~~~~~lRv 425 (476)
+. .+.++.+.++..++++.|.+.|++.|... ...+..+.++|..-.++ +.+++..+ ..++ ||
T Consensus 317 l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L~e~~Vy~~~~g---Ri 393 (420)
T 4h51_A 317 LSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEYCQNHNIFITVSG---RA 393 (420)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHTTEECCTTC---EE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHHHHHhCCEEEcCCC---EE
Confidence 21 23456667778889999999999876321 11222333344322222 12333333 2222 88
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
++. ..|.+.|+++.++|.++.+.+.|
T Consensus 394 s~A-gl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 394 NMA-GLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp EGG-GCCHHHHHHHHHHHHHHHC----
T ss_pred Eec-cCCHHHHHHHHHHHHHHHHHhhc
Confidence 764 47899999999999999887664
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-15 Score=151.82 Aligned_cols=296 Identities=15% Similarity=0.114 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccE--EEcCCchhHHHHHHHHHHhhCCCcEEEecCCCch---HHH-----HHHHHcCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRESHY---SVF-----KAARMYRM 206 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g--~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~---S~~-----~~~~~~G~ 206 (476)
..++|..+.+...++||++.. .|+ +-..+|+.||+.+..+..+ |+|.|+.-+..|. +.- ......|.
T Consensus 98 vD~iE~la~~rak~lF~a~~A-~w~VNVQP~SGs~AN~avy~All~--PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~ 174 (490)
T 3ou5_A 98 VDEIELLCQRRALEAFDLDPA-QWGVNVQPYSGSPANLAVYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSI 174 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT-TEEEECCCSSHHHHHHHHHHHHCC---CCCEECBC-----------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcc-ccCCCCCcCCHHHHHHHHHHHHcC--CCCEEEecccCCCCcccccccCCCcccccccc
Confidence 468999999999999999864 354 3456999999999999887 9999998777643 322 11223343
Q ss_pred --eEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 207 --ECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 207 --~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
+.+.++++ +++.+|+|.+++...+. +|.+|++ |.+..-..-|++++.+||++.|+ +|++|.||-.+.+
T Consensus 175 ~~~~~~Y~vd~~t~~IDyd~~~~~A~~~--kPklIi~--G~SaY~r~id~~~~reIAd~vGA-----~Lm~DmAHiaGLV 245 (490)
T 3ou5_A 175 FFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIA--GTSAYARLIDYARMREVCDEVKA-----HLLADMAHISGLV 245 (490)
T ss_dssp -----CBCEETTTTEECHHHHHHHHHHH--CCSEEEE--CCSSCCSCCCHHHHHHHHHHHTC-----EEEEECGGGHHHH
T ss_pred cccccccccCCCCCcccHHHHHHHHhhc--CCCeEEE--CCccCccccCHHHHHHHHhhccc-----EEEechhhhhhhh
Confidence 45555666 46899999999988765 3447766 65555667899999999999999 9999999965544
Q ss_pred cccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhh---cCCccccCCC------CCcccCCCCChhHHHH
Q 011842 284 PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL---SSNVEYLASR------DATIMGSRNGHAPIFL 354 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l---~~~~~yl~~~------~~~~~~sr~~~~~l~~ 354 (476)
....+..++. .+|+++.+.||.|.+| +.|+++++++..... .....|-... =+.++|+...+...+.
T Consensus 246 A~g~~psP~~---~ADvVTtTTHKTLrGP-rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAk 321 (490)
T 3ou5_A 246 AAKVIPSPFK---HADIVTTTTHKTLRGA-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAV 321 (490)
T ss_dssp HTTSSCCGGG---TCSEEEEESSSTTCSC-SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHH
T ss_pred cccccCCccc---cceEEeccccccccCC-CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHH
Confidence 4444433333 3899999999999965 578888887421000 0000000000 0223444443444445
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC----cH---HHhhcee-------ecc-
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ----DE---EFVRRWQ-------LAC- 418 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~----~~---~~~~~~~-------l~~- 418 (476)
..+++......++++.++..+||+.|.+.|.+.|+.++... .+..+.+...+ .. ..+.+.. +|.
T Consensus 322 AVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D 401 (490)
T 3ou5_A 322 AVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD 401 (490)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC
Confidence 55555544567899999999999999999999999876532 24555555321 11 2222211 222
Q ss_pred ----cCCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 419 ----QGNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ----~~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
....+|+.+ +....++|++++.+.|.+++.
T Consensus 402 ~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 402 RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 235789974 566789999999999988664
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=160.21 Aligned_cols=270 Identities=11% Similarity=0.017 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH--------HhhCCCcEEEecCCCchHHHHHHHHcCCeE
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG--------REVFPDGILYASRESHYSVFKAARMYRMEC 208 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa--------~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v 208 (476)
..++++++.+++.+..+...++..+++|+|+++++..++.+. .+ ||+.|+++.+.|.++...++..|+++
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~~ 179 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDA--PESKVVAHAPFYPVFREQTKYFDKKG 179 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTS--CCEEEEECSSCCHHHHHHHHHSCBTT
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCC--CCCEEEEeCCCcccHHHHHHHcCCee
Confidence 358999999998876554323346999999999999998887 44 89999999999999999999999987
Q ss_pred EEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 209 VKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 209 ~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+.+ .+|+++|++++.++ +.+|++++++|+||.+-+ + + ++ ++ +.+.|+++.. + .
T Consensus 180 ~~~------~~d~~~l~~~~~~~---~k~v~l~~p~NPtG~~~~-~-~---l~--~~-----~~i~d~~~~~---~---~ 232 (427)
T 2hox_A 180 YVW------AGNAANYVNVSNPE---QYIEMVTSPNNPEGLLRH-A-V---IK--GC-----KSIYDMVYYW---P---H 232 (427)
T ss_dssp EEE------EEEGGGGTTCSCGG---GEEEEEESSCTTTCCCCC-C-S---ST--TC-----EEEEECTTCS---T---T
T ss_pred eee------cCCHHHHHHhhcCC---ceEEEEcCCCCCcccccH-H-H---Hc--CC-----CEEEeecccC---C---C
Confidence 643 45788888777543 347788899999999988 3 2 22 56 7888888642 1 1
Q ss_pred CCCCCCcccccEEEEcCCCCCC-CCCCceeEEee-hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC----
Q 011842 289 APKVSFKKPIGSVSVSGHKFVG-CPMPCGVQITR-MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG---- 362 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~-~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g---- 362 (476)
.+...+....+++..|++|.++ .++++|+++++ +++++.+.....+.. .+. ..+.++++...+.
T Consensus 233 ~s~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~-------~~~---~~~~q~a~~~~L~~~~~ 302 (427)
T 2hox_A 233 YTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNT-------EGT---PRETQLRSLKVLKEVVA 302 (427)
T ss_dssp TSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHT-------SSC---CHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcC-------CCC---CHHHHHHHHHHhhcchh
Confidence 1112222236889999999886 66889999996 566655533222210 011 1233333333321
Q ss_pred ---------hhcHHHHHHHHHHHHHHHHHHHHhc-CCeE--e------------ecCCeeEEEEecCC-cH----HHh--
Q 011842 363 ---------YKGFQKEVQKCLRNAHYLKDRLLDA-GISA--M------------LNELSSTVVFERPQ-DE----EFV-- 411 (476)
Q Consensus 363 ---------~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~--~------------~~~~~~iv~f~~~~-~~----~~~-- 411 (476)
.+-+++..+++.+++++|.+.|++. |+.. + .++..+.+.+..+. .. .+.
T Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~ 382 (427)
T 2hox_A 303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQN 382 (427)
T ss_dssp HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHH
Confidence 1234556677888999999999987 4322 1 12224555556553 11 222
Q ss_pred hceeecc------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 412 RRWQLAC------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 412 ~~~~l~~------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+++.+.. ..+.+|+++. +++++|+.+++.|.++.
T Consensus 383 ~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~ 422 (427)
T 2hox_A 383 GRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMV 422 (427)
T ss_dssp TTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred CCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 2333321 2468999987 48999999999998765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=157.20 Aligned_cols=283 Identities=12% Similarity=0.025 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh------C-----------------CC---cEEEecC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV------F-----------------PD---GILYASR 191 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~------~-----------------p~---~~Vl~s~ 191 (476)
.++++++.++++++++...+ .++||+|||+||..|+.+++.. . |+ +.|++.+
T Consensus 109 ~~l~~~la~~l~~~~~~~~~--~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~ 186 (472)
T 1ohv_A 109 ENFVEKLRESLLSVAPKGMS--QLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFM 186 (472)
T ss_dssp TTHHHHHHHTGGGGCCTTCC--EEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCcC--EEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEEC
Confidence 47888888877777654332 4999999999999999998622 0 23 5666655
Q ss_pred CC-chHHHHHHHHcCCeE-----------EEEeCCC-CC-------------ccCHHHHHHHHHcCC---CCcEEEEEee
Q 011842 192 ES-HYSVFKAARMYRMEC-----------VKVDCLI-SG-------------EIDCADFKAKLLQNK---DKPAIINVNI 242 (476)
Q Consensus 192 ~~-H~S~~~~~~~~G~~v-----------~~v~~~~-~g-------------~~D~~~Le~~l~~~~---~~p~~vv~t~ 242 (476)
.. |.+...+..+.|... ..++... .. ..|+++|+++|++.. .++.+|+++.
T Consensus 187 ~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~ 266 (472)
T 1ohv_A 187 GAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP 266 (472)
T ss_dssp TCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcC
Confidence 54 444444444444211 1122210 00 237899999997621 1345777776
Q ss_pred CCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccccc-C-CCCCCcccccEEEEcCCCC-CCCCCCc
Q 011842 243 GTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK-A-PKVSFKKPIGSVSVSGHKF-VGCPMPC 315 (476)
Q Consensus 243 gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~-~-~~~~~~~~~Dsi~~s~hK~-l~~p~~~ 315 (476)
..+++|.+.| +++|.++|++||+ ++|+|++|.++... ... . ..+.....+|+++++ |+ ++ .
T Consensus 267 v~~~~G~~~~~~~~l~~l~~l~~~~g~-----lli~DEv~~g~g~~-g~~~~~~~~gv~~~~Di~t~s--K~~l~----G 334 (472)
T 1ohv_A 267 IQSEGGDNHASDDFFRKLRDISRKHGC-----AFLVDEVQTGGGST-GKFWAHEHWGLDDPADVMTFS--KKMMT----G 334 (472)
T ss_dssp SBCTTTCBCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTTTTT-SSSSGGGGGCCSSCCSEEEEC--GGGSS----E
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHhCC-----EEEEeCcccCCCCC-CCchhccccCCCCCCCEEEEc--ccccc----C
Confidence 6788999877 9999999999999 99999999753221 110 0 001111126877665 98 44 2
Q ss_pred eeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHH---HHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----C
Q 011842 316 GVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----G 388 (476)
Q Consensus 316 G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g 388 (476)
|+++ +.++ ..+ ...+. ..++.+ .++.+. ++++.+.. ++..++..+++++|+++|++. +
T Consensus 335 G~~~-~~~~-~~~--~~~~~---~~T~~~-----~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~ 399 (472)
T 1ohv_A 335 GFFH-KEEF-RPN--APYRI---FNTWLG-----DPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYP 399 (472)
T ss_dssp EEEE-CGGG-SCS--SSSSS---CCSSSS-----CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CccC-chhh-ccc--ccccc---cCccCc-----cHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6655 5443 111 11010 011111 133333 33443322 245677788888898888775 2
Q ss_pred C-eEeecCCeeEEEEecCCc---HHHhh-----ceeec-ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 389 I-SAMLNELSSTVVFERPQD---EEFVR-----RWQLA-CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 389 ~-~~~~~~~~~iv~f~~~~~---~~~~~-----~~~l~-~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
. .....+...++.|..+.. ..+.+ ++.+. ...+.+|++++..+|++|||+++++|+++.++
T Consensus 400 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 400 QFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp TTCEEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcEEeecCCceEEEEEeCChhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 111223345666665432 22222 33333 33579999999999999999999999987653
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-14 Score=150.54 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEec-CCCchHHHHHHHH-----cCCeEEEEe
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYAS-RESHYSVFKAARM-----YRMECVKVD 212 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s-~~~H~S~~~~~~~-----~G~~v~~v~ 212 (476)
.++.++.+.+++++.-- ....|+++||+||..|++++|....+..|+.- ..-|......... .......+|
T Consensus 127 ~~~~~lae~l~~~~p~~---~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p 203 (454)
T 4ao9_A 127 LLEGRLARLICERFPQI---EQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLP 203 (454)
T ss_dssp SSHHHHHHHHHHHSTTC---SEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCC---CEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCC
Confidence 44556667777777422 23899999999999999999875444555544 4444322111000 112355566
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.+ |++.+++.|++.......|++.-..+..|.+.| +++|.++|++||+ ++++|+++.|-.......
T Consensus 204 ~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~-----lLI~DEV~tGR~G~~~a~ 273 (454)
T 4ao9_A 204 YN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGA-----LLVFDEVMTSRLAPHGLA 273 (454)
T ss_dssp TT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTC-----EEEEECTTGGGGSTTCHH
T ss_pred Cc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCC-----EEEEECCCcCCCccccch
Confidence 55 899999999987655566777655777788877 9999999999999 999999996422211100
Q ss_pred CCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCc-cccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNV-EYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 289 ~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~-~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
. .+.+ ..|.+++. |.++.++++|+++.+.+.++.+.... .+.. ..|+.+ .+++..++++.+..-.-+
T Consensus 274 e-~~gv--~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~~~~h--~~T~~g-----nPla~AAala~L~~l~~~ 341 (454)
T 4ao9_A 274 N-KLGI--RSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTGPLAH--SGTFNN-----NVMTMAAGYAGLTKLFTP 341 (454)
T ss_dssp H-HHTC--CCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTCSCCC--CCTTTT-----CHHHHHHHHHHHHHTSCH
T ss_pred h-ccCC--CCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccCCccc--cCCCCC-----CHHHHHHHHHHHHHHhcc
Confidence 0 0111 25888766 98988899999999999877664321 1111 112222 234444444333211114
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCeE-eecCCeeE-EEEecCC----------cHHH---------hhceeecccCCE
Q 011842 368 KEVQKCLRNAHYLKDRLLDA----GISA-MLNELSST-VVFERPQ----------DEEF---------VRRWQLACQGNI 422 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~----g~~~-~~~~~~~i-v~f~~~~----------~~~~---------~~~~~l~~~~~~ 422 (476)
+..++..++.++|+++|++. ++.. +...++.+ +.|...+ +..+ .++..+...+
T Consensus 342 ~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-- 419 (454)
T 4ao9_A 342 EAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--
Confidence 56677777888888887663 4321 11112211 1221111 1111 1222333322
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++.++.-+|++|||+++++|++++.+.
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 355667789999999999999998764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-17 Score=170.51 Aligned_cols=282 Identities=14% Similarity=0.063 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHcC-CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHH---HHcCC--eEEE
Q 011842 138 RQFEVGVLDWFARLWE-LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAA---RMYRM--ECVK 210 (476)
Q Consensus 138 ~~le~~~~~~la~l~g-~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~---~~~G~--~v~~ 210 (476)
.+.+.++.+.++++++ .+ ..++++|||+||..|+.++|....++.|++.+.+|.. ...+. ...|+ .+..
T Consensus 139 ~~~~~~Lae~L~~~~p~~~----~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~ 214 (465)
T 2yky_A 139 TENEALFAEAVCDRFPSID----LVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVL 214 (465)
Confidence 3666777788888884 32 3889999999999999998754344666666555433 33222 12233 3344
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
+|.+ |+++|+++|++...++.+|+++...+++|.+.| +++|.++|++||+ ++++|++|+ +.. .
T Consensus 215 ~~~~-----d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~-----llI~DEv~~-~r~--g 281 (465)
T 2yky_A 215 GVYN-----DVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGA-----LLIFDEVMT-SRL--S 281 (465)
Confidence 4433 889999999753333446666655666897766 9999999999999 999999998 421 1
Q ss_pred ccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC---CccccCCCCCcccCCCCChhHHHHHHHHHHhC
Q 011842 287 KKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS---NVEYLASRDATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 287 ~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~---~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
... .++... ..|++ ++.|+++.++++|++++++++++.+.. ...+.. .++.+. ++.+.+++..+.
T Consensus 282 ~~~-a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~---~T~~~n-----pla~aAa~aaL~ 350 (465)
T 2yky_A 282 GGG-AQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHA---GTFNNN-----ILTMSAGHAALT 350 (465)
Confidence 110 011111 25665 456999988999999999887766543 111111 122222 333433333331
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhc----CCeEeecCCeeEEEEecCC------------cHHHhhce---------eec
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDA----GISAMLNELSSTVVFERPQ------------DEEFVRRW---------QLA 417 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~------------~~~~~~~~---------~l~ 417 (476)
.-.-+...++..++.++|+++|++. +.....+....++.+..++ +.+....+ .+.
T Consensus 351 ~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~ 430 (465)
T 2yky_A 351 QIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA 430 (465)
Confidence 1111346677778888888888775 2211122333444443322 00111111 111
Q ss_pred ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 418 CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 418 ~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+. .. ++..+|++|||+++++|+++.+++
T Consensus 431 p~~~--~~-~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 431 PRGM--YA-LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 1110 11 455689999999999999887654
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-10 Score=118.65 Aligned_cols=288 Identities=14% Similarity=0.069 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCc-hHHHHHHHHcC------------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESH-YSVFKAARMYR------------ 205 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H-~S~~~~~~~~G------------ 205 (476)
+.+.++.+.+.++...+. ....+|+++||+||-.|++.+|....+..|+.-+.+| .....+....+
T Consensus 107 ~~~~~lae~L~~~~p~~~-~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~ 185 (456)
T 4atq_A 107 EGYVAVTEQLNRLTPGDH-AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPF 185 (456)
T ss_dssp HHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSC
T ss_pred HHHHHHHHHHHHhCCCCC-CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCc
Confidence 555567788888875431 1247899999999999999999865566666655554 33222222221
Q ss_pred -CeEEEEeCCC-----C-CccCHHHHHHHHHc-----CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCc
Q 011842 206 -MECVKVDCLI-----S-GEIDCADFKAKLLQ-----NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDR 269 (476)
Q Consensus 206 -~~v~~v~~~~-----~-g~~D~~~Le~~l~~-----~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~ 269 (476)
-.+..+|... . ..-+.+.+++.++. .......|++.-.....|.+.| +++|.++|++||+
T Consensus 186 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gi---- 261 (456)
T 4atq_A 186 APEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGI---- 261 (456)
T ss_dssp CSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC----
T ss_pred cccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCC----
Confidence 1355566431 1 12234444444432 2234456666544556676654 9999999999999
Q ss_pred eEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCC
Q 011842 270 FYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 270 ~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
++++|+++.|+.-.+.-.. ..+.+ ..|.++++ |.++.+.++|.++.+++..+.+... . ...|+.+.
T Consensus 262 -llI~DEV~tG~GRtG~~~a~e~~gv--~PDivt~g--K~lggg~P~~av~~~~~i~~~~~~~--~---~~~Tf~gn--- 328 (456)
T 4atq_A 262 -VFIADEVQSGFCRTGEWFAVDHEGV--VPDIITMA--KGIAGGLPLSAITGRADLLDAVHPG--G---LGGTYGGN--- 328 (456)
T ss_dssp -EEEEECTTTTTTTTSSSSGGGGTTC--CCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTT--S---SCCSSSSC---
T ss_pred -ceEecccccccCCccccccccccCC--CCchhhhh--hcccCcCCceeeEecHHHHhccccc--C---CCCCCCCC---
Confidence 9999999977422110000 00111 26988876 8788889999999999877655321 1 11233332
Q ss_pred hhHHHHHHH---HHHhChhcHHHHHHHHHHHHHHHHHHHHhc----CC---eE---eecCCeeE-EEEecCC----cHHH
Q 011842 349 HAPIFLWYT---LNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----GI---SA---MLNELSST-VVFERPQ----DEEF 410 (476)
Q Consensus 349 ~~~l~~~~~---l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g~---~~---~~~~~~~i-v~f~~~~----~~~~ 410 (476)
+++..++ |+.+..++ ..++..++.++|.++|++. +. .. +...+..+ +-|..+. +.++
T Consensus 329 --pla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~ 403 (456)
T 4atq_A 329 --PVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAEL 403 (456)
T ss_dssp --HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHH
T ss_pred --hHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHH
Confidence 3444444 44443333 4556666677777777653 11 00 11111111 1232221 1111
Q ss_pred ---------hhceee-cc--cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 ---------VRRWQL-AC--QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 ---------~~~~~l-~~--~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+ ++ .++.+|+.....+|+++||.++++|+++++.
T Consensus 404 ~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 404 TKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 233333 22 3578998877788999999999999998764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=120.24 Aligned_cols=297 Identities=15% Similarity=0.102 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CC-CcEEEecCCC-chHHHHHHHHcCC-----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FP-DGILYASRES-HYSVFKAARMYRM----- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p-~~~Vl~s~~~-H~S~~~~~~~~G~----- 206 (476)
+.+.++.+.|.++...+.+ ..+|+++||+||-.|++++|.. .+ +..|+.-+.+ |.....++...|-
T Consensus 111 ~~~~~lAe~L~~~~p~~~~--~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~ 188 (473)
T 4e3q_A 111 DQTVMLSEKLVEVSPFDSG--RVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV 188 (473)
T ss_dssp HHHHHHHHHHHHHSSCSSC--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGG
T ss_pred HHHHHHHHHHHhhCCCCcc--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccc
Confidence 5566778888888865433 3899999999999999998753 12 3345544444 4333333333221
Q ss_pred ------eEEEEeCC------CCCcc-------CHHHHHHHHHcC-CCCcEEEEEeeCCCccccccC----HHHHHHHHHH
Q 011842 207 ------ECVKVDCL------ISGEI-------DCADFKAKLLQN-KDKPAIINVNIGTTVKGAVDD----LDLVIQTLEE 262 (476)
Q Consensus 207 ------~v~~v~~~------~~g~~-------D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~ 262 (476)
....++.. ..+.. ..++|++.|.+. .+....|++.-....-|.+.| +++|.++|++
T Consensus 189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~ 268 (473)
T 4e3q_A 189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK 268 (473)
T ss_dssp GTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred cCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence 23344332 11111 234566666543 334455666544555676644 8999999999
Q ss_pred hCCCCCceEEEEecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccC--CC
Q 011842 263 SGFTQDRFYIHCDGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLA--SR 338 (476)
Q Consensus 263 ~g~~~~~~~lhvD~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~--~~ 338 (476)
||+ ++++|+++.|+--...-.. ..+.+ ..|.+++. |.++.+ .++|.++++++..+.+........ ..
T Consensus 269 ~gi-----lLI~DEV~tGfGRtG~~fa~e~~gv--~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h 339 (473)
T 4e3q_A 269 YDI-----PVISDEVICGFGRTGNTWGCVTYDF--TPDAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPH 339 (473)
T ss_dssp TTC-----CEEEECTTTSSSTTSSSCHHHHTTC--CCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCC
T ss_pred cce-----EEeccCccccCCcccchhHHHhcCC--CCChHHhc--ccccCCCCCcccccccHHHHHHhcccccccccccc
Confidence 999 9999999977521110000 00111 26888766 888777 799999999997665532111100 00
Q ss_pred CCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC---Ce-EeecCCeeEEEEec--CC------
Q 011842 339 DATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG---IS-AMLNELSSTVVFER--PQ------ 406 (476)
Q Consensus 339 ~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g---~~-~~~~~~~~iv~f~~--~~------ 406 (476)
..|+.+ .+++..++++.+..-.-++.+++..++.++|.++|+++. .. .+...+ .+..+.. +.
T Consensus 340 g~T~~G-----npla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~G-l~~gielv~~~~~~~~~ 413 (473)
T 4e3q_A 340 GFTASG-----HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIG-FMWALEAVKDKASKTPF 413 (473)
T ss_dssp CCTTTT-----CHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCC
T ss_pred CCCCCC-----CcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecc-eEEEEEEecCccccccc
Confidence 112222 234444444443211113355666778888888887742 11 111111 1222221 10
Q ss_pred c------HHH-----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 407 D------EEF-----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 407 ~------~~~-----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+ ..+ .+++.+...++.+|+.....+|+++||.+++.|++++++..+
T Consensus 414 ~~~~~~~~~~~~~~~~~Gll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 414 DGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp CGGGCHHHHHHHHHHHTTEECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 123334445678887766678999999999999999887654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=135.95 Aligned_cols=297 Identities=8% Similarity=-0.026 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH-hh--C------------CCcEEE-ecCCCchHHHHHHH
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR-EV--F------------PDGILY-ASRESHYSVFKAAR 202 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~-~~--~------------p~~~Vl-~s~~~H~S~~~~~~ 202 (476)
+...++.+.|+++.+-+. -...+|+++||+||-.|+.+++ .. . .+..|| .....|.+...++.
T Consensus 424 ~~~~~Lae~L~~~~p~~~-l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals 502 (831)
T 4a0g_A 424 EPALKCAELLLDGVGKGW-ASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAME 502 (831)
T ss_dssp HHHHHHHHHHHHTTTTTT-CCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-CCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeee
Confidence 444467777888776320 1238999999999999999984 22 1 123444 45555666666655
Q ss_pred HcCCe---------------E-------------EEEeCCCCC---------ccC------------------HHHHHHH
Q 011842 203 MYRME---------------C-------------VKVDCLISG---------EID------------------CADFKAK 227 (476)
Q Consensus 203 ~~G~~---------------v-------------~~v~~~~~g---------~~D------------------~~~Le~~ 227 (476)
..|.. . ..++..... .-| .++|++.
T Consensus 503 ~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 582 (831)
T 4a0g_A 503 AQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKH 582 (831)
T ss_dssp TSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred ccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHH
Confidence 54421 0 112221100 001 2677777
Q ss_pred HHc-----CCCCcEEEEEeeC-CCccccccC----HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccc
Q 011842 228 LLQ-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKP 297 (476)
Q Consensus 228 l~~-----~~~~p~~vv~t~g-tt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~ 297 (476)
|++ .......|++... .+..|.+.+ +++|.++|++||+ ++++|+++.|+............+ -.
T Consensus 583 l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gi-----lLI~DEV~tGfGRtG~~fa~e~~g-v~ 656 (831)
T 4a0g_A 583 LQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKI-----PVIFDEVFTGFWRLGVETTTELLG-CK 656 (831)
T ss_dssp C---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTC-----CEEEECTTTTTTTTSBSSTHHHHS-SC
T ss_pred HHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCC-----eEEEEcCccccccCCCchhhHhcC-CC
Confidence 763 2333445555432 456666654 9999999999999 999999987642211000000001 12
Q ss_pred ccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccc-cCCCCCcccCCCCChhHHHHHHHHHH---hChhcHHHHH--
Q 011842 298 IGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEY-LASRDATIMGSRNGHAPIFLWYTLNR---KGYKGFQKEV-- 370 (476)
Q Consensus 298 ~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~y-l~~~~~~~~~sr~~~~~l~~~~~l~~---~g~~g~~~~~-- 370 (476)
.|+++++ |.++++ +++|++++++++.+.+...... .+....|+.+ .++...++++. +..+.+.+.+
T Consensus 657 PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g-----~Pla~Aaala~L~~i~~~~l~~~~~~ 729 (831)
T 4a0g_A 657 PDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSA-----HAMGCATAAKAIQWFKDPETNHNITS 729 (831)
T ss_dssp CSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTT-----CHHHHHHHHHHHHHHHCTTTCTTBCT
T ss_pred CcEEEEe--cccccCccCcEEEEECHHHHHHHhcccccccceeecCCcc-----cHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5877654 988877 6899999999987766432110 0000112222 23444444433 3222221111
Q ss_pred --HHHHH-HHHHHHHHHHhcCCeEeecCCeeEEEEecCCc-----------HHH-----hhceeecccCCEEEEEEcCCC
Q 011842 371 --QKCLR-NAHYLKDRLLDAGISAMLNELSSTVVFERPQD-----------EEF-----VRRWQLACQGNIAHVVVMPNV 431 (476)
Q Consensus 371 --~~~~~-~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~-----------~~~-----~~~~~l~~~~~~lRv~~~~~~ 431 (476)
++..+ +.+.+.+.+++.+..........++.+....+ ..+ .+++.+...++.+|++..+.+
T Consensus 730 ~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~ 809 (831)
T 4a0g_A 730 QGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCT 809 (831)
T ss_dssp TSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCC
Confidence 11110 11234455556554322222222333332110 111 234444455789999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011842 432 TIDKLDDFLNELIENRST 449 (476)
Q Consensus 432 T~edid~~~~~l~~~~~~ 449 (476)
|++|||+++++|.++.++
T Consensus 810 t~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 810 SPEICRRLLTKLYKRLGE 827 (831)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 476 | ||||
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 2e-30 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 1e-27 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 1e-19 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 121 bits (303), Expect = 2e-30
Identities = 60/426 (14%), Positives = 126/426 (29%), Gaps = 70/426 (16%)
Query: 81 MAGVLARYRKTLMERTKH-----HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGV 135
+L K +M H Y LA + +I +G + S
Sbjct: 53 FEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPA-- 110
Query: 136 HSRQFEVGVLDWFARLWEL-------ENNEYWGYITNCGTEGNLHGILVGRE-------- 180
+ E ++DW ++ +L E E G I +E L +L R
Sbjct: 111 -CTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169
Query: 181 ---------VFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFK---AKL 228
V + YAS ++H SV +A + ++ + + + + +
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229
Query: 229 LQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288
P + +GTT + D+L V E ++H D A G +
Sbjct: 230 KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI-----WLHVDAAYAGSAFICPEF 284
Query: 289 APKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDA-------- 340
++ + S + + HK++ C + + ++ + + +
Sbjct: 285 RHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT 344
Query: 341 -----TIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE 395
+ R + + +W+ G KG Q ++K ++ +H + +L + E
Sbjct: 345 DYRHWQLPLGRRFRS-LKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE 403
Query: 396 -LSSTVVFERPQDEEFVRRW-QLACQGNIAHV--------------VVMPNVTIDKLDDF 439
V F + + H+ + V +
Sbjct: 404 VTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLA 463
Query: 440 LNELIE 445
+
Sbjct: 464 WEHIRG 469
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 112 bits (280), Expect = 1e-27
Identities = 71/354 (20%), Positives = 116/354 (32%), Gaps = 48/354 (13%)
Query: 137 SRQFEVGVLDWFARLWEL---ENNEYWGYITNCGTEGNLHGILVGREVF----------P 183
S ++ ++ A LW +N + G T +E + G + + +
Sbjct: 91 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT 150
Query: 184 DGILYASRESHYSVFKAARMYRMECVKVDC-LISGEIDCADFKAKLLQNKDKPAIINVNI 242
D K AR + +E ++ +D + +
Sbjct: 151 DKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC---DENTIGVVPTF 207
Query: 243 GTTVKGAVDDLDLVIQTLEESGFTQDR-FYIHCDGALFGLMMPFVKKAPKVSFKKP-IGS 300
G T G + + L++ +H D A G + PFV F+ P + S
Sbjct: 208 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKS 267
Query: 301 VSVSGHKFVGCPMPCGVQITRMEHI--NVLSSNVEYLASRDAT--IMGSRNGHAPIFLWY 356
+S SGHKF P+ CG I R E L NV+YL + T I SR I +Y
Sbjct: 268 ISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYY 327
Query: 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG----ISAMLNELSSTVVFERPQDEEFV- 411
R G +G+ K + A YL D + G I + V + +D E
Sbjct: 328 EFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG 387
Query: 412 ------------RRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIE 445
R WQ+ A + ++ +D + L +
Sbjct: 388 YTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKA 441
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.5 bits (218), Expect = 1e-19
Identities = 29/254 (11%), Positives = 66/254 (25%), Gaps = 19/254 (7%)
Query: 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYS 196
+ ++ +L + + + L R P + R S
Sbjct: 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKS 152
Query: 197 VFKAARMYRMECVKVDCLISGEIDCAD----FKAKLLQNKDKPAIINVNIGTTVKGAVDD 252
FK+ E V ++ ++ G+ D + ++ D
Sbjct: 153 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR 212
Query: 253 LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCP 312
L+ + + A + + + I + S K P
Sbjct: 213 LEELAVICANYD-----IPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP 267
Query: 313 MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372
+ + N ++ G + + + TL G G++K +++
Sbjct: 268 VGGAIIAGF---------NEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKE 318
Query: 373 CLRNAHYLKDRLLD 386
YL +L
Sbjct: 319 RKEMFVYLSTQLKK 332
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 476 | |||
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 100.0 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.97 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.97 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.97 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.97 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.95 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.95 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.95 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.94 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.93 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.93 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.92 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.91 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.91 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.9 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.9 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.9 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.9 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.9 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.89 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.89 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.89 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.89 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.89 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.89 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.88 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.88 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.87 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.86 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.86 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.85 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.85 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.83 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.82 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.81 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.8 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.79 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.79 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.79 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.77 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.77 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.77 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.76 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.76 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.75 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.74 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.74 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.74 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.73 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.73 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.72 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.7 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.7 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.69 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.69 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.68 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.66 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.65 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.64 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.64 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.63 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.61 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.6 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.6 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.57 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.56 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.53 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.53 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.5 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.49 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.48 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.48 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.48 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.43 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.41 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.4 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.33 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.3 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.14 |
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=3.2e-54 Score=447.93 Aligned_cols=380 Identities=17% Similarity=0.225 Sum_probs=316.7
Q ss_pred ccccCCCcccc----ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcc------hHHHHHHHHHhhCCCCCCcccC
Q 011842 62 FSVTEPEADDE----FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFD------YGALAQLQHFSINNLGDPFIES 131 (476)
Q Consensus 62 ~~~~~p~~~~~----~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~------~~~l~~~l~~~~n~~g~~~~~~ 131 (476)
....+|+++.. .+|+.|.+.+++++++.+.+.++.+ +|+||+++++. ++.+++++...+|+++..|..+
T Consensus 30 ~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~-~~~~P~f~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~s 108 (476)
T d1js3a_ 30 YPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVT-HWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAAS 108 (476)
T ss_dssp SCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCC-CTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGC
T ss_pred CCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCC-CCCCCCeeEeCCCCCCHHHHHHHHHHHhhcccccchhhh
Confidence 33445655543 7899999999999999999988875 78899998874 6889999999999999999888
Q ss_pred ccchhhHHHHHHHHHHHHHHcCCCCC-------cccEEEcCCchhHHHHHHHHHHhhC-----------------CCcEE
Q 011842 132 NYGVHSRQFEVGVLDWFARLWELENN-------EYWGYITNCGTEGNLHGILVGREVF-----------------PDGIL 187 (476)
Q Consensus 132 ~~~~~~~~le~~~~~~la~l~g~~~~-------~~~g~~t~ggt~An~~al~aa~~~~-----------------p~~~V 187 (476)
| ..+++|+++.+|+++++|++.. ..+|++|+|||+||++|+++||++. +..+|
T Consensus 109 p---~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv 185 (476)
T d1js3a_ 109 P---ACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (476)
T ss_dssp H---HHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred h---hHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEE
Confidence 7 5789999999999999999742 3578999999999999999998741 23589
Q ss_pred EecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC---CCCcEEEEEeeCCCccccccCHHHHHHHHHHhC
Q 011842 188 YASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN---KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG 264 (476)
Q Consensus 188 l~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~---~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g 264 (476)
|+++.+|||+.|+++++|++++.||++++++||+++|+++|+++ +..|++|++|.|||.+|.+|||++|+++|++||
T Consensus 186 ~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~ 265 (476)
T d1js3a_ 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265 (476)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTT
T ss_pred EecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999864 567899999999999999999999999999999
Q ss_pred CCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCC-----
Q 011842 265 FTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLAS----- 337 (476)
Q Consensus 265 ~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~----- 337 (476)
+ |+||||||||+..++.++...+.+.+.+||+++++|||+++|++||++++|++. ...+.....|+..
T Consensus 266 ~-----wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 266 I-----WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp C-----EEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C
T ss_pred c-----EEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccc
Confidence 9 999999999998888777777888888999999999999999999999999863 3444444445432
Q ss_pred ------CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEe-ecCCeeEEEEecCCcHHH
Q 011842 338 ------RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAM-LNELSSTVVFERPQDEEF 410 (476)
Q Consensus 338 ------~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~iv~f~~~~~~~~ 410 (476)
.+.++.+||+ +.++++|.+++.+|.+|+++++++..+++++|.+.|++.+.+.+ .+|..++|+|+..+.+.+
T Consensus 341 ~~~~~~~~~~~~~sr~-~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~ 419 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGL 419 (476)
T ss_dssp CSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHH
T ss_pred cccccccccccccchh-hHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHH
Confidence 2356889997 45799999999999999999999999999999999999865554 466789999997543332
Q ss_pred ----hhce------ee-cc---cCCEEEEEE-cCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 411 ----VRRW------QL-AC---QGNIAHVVV-MPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 411 ----~~~~------~l-~~---~~~~lRv~~-~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
.+++ .+ ++ +..++|+++ ++.+|++|||.+++.|+++.+++.
T Consensus 420 n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 420 NEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp HHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 2211 11 11 234789875 599999999999999999998764
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-46 Score=383.96 Aligned_cols=376 Identities=20% Similarity=0.203 Sum_probs=303.7
Q ss_pred CCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcC-CcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHH
Q 011842 67 PEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNL-DFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVL 145 (476)
Q Consensus 67 p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~-~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~ 145 (476)
+......+|+++..++.+...+.+.+....+..+++..+. .+..+.+.+++...+|.+...+..+| .++++|.++.
T Consensus 23 ~~~~~~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~~~P---~~~~lE~~~v 99 (450)
T d1pmma_ 23 TIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYP---QSAAIDLRCV 99 (450)
T ss_dssp SCCCCSSCCCSCCCHHHHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTCTTTSH---HHHHHHHHHH
T ss_pred cccccccCCccCCCHHHHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCCcccCc---cHHHHHHHHH
Confidence 3344457899999999999998887655433345555543 23346788999999997766676666 6789999999
Q ss_pred HHHHHHcCCCCC---cccEEEcCCchhHHHHHHHHHHhhC----------CCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 146 DWFARLWELENN---EYWGYITNCGTEGNLHGILVGREVF----------PDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 146 ~~la~l~g~~~~---~~~g~~t~ggt~An~~al~aa~~~~----------p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
+|+++|+|++.. ...|++|+|||+||++|++++|++. ....++++..+|+|+.|+++++|++++.||
T Consensus 100 ~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~ 179 (450)
T d1pmma_ 100 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIP 179 (450)
T ss_dssp HHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEee
Confidence 999999999742 3469999999999999999998741 234577888899999999999999999999
Q ss_pred CCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH------HhCCCCCceEEEEecCcccccccc
Q 011842 213 CLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE------ESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 213 ~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~------~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+++ ++.||+++|++++++++ ++|+++.|+|.+|.+||+++|.++|+ ++|+ |+||||||+|++.|+
T Consensus 180 ~~~~~~~~d~~~L~~~i~~~t---~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i-----~lHVDAA~gG~~~p~ 251 (450)
T d1pmma_ 180 MRPGQLFMDPKRMIEACDENT---IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDI-----DMHIDAASGGFLAPF 251 (450)
T ss_dssp CBTTBCSCCHHHHHHHCCTTE---EEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCC-----CEEEECTTGGGTHHH
T ss_pred ecCCCCcCcHHHHHHHhhhCc---eEEEeeeeeccCCCccccchhhHHHHHHHHHhccCc-----EEEeehhhccceeee
Confidence 986 59999999999998765 58999999999999999999998865 4678 999999999998877
Q ss_pred cccCCCCCC-cccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHH
Q 011842 286 VKKAPKVSF-KKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 286 ~~~~~~~~~-~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
......+++ .+++|||++|+|||+++|.+||++++|++. ...+...+.|+... +.++.+||++..++++|+.++.
T Consensus 252 ~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~ 331 (450)
T d1pmma_ 252 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR 331 (450)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHH
T ss_pred echhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhh
Confidence 665544554 356999999999999999999999999873 24455566777643 3678899998888899999999
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-----CCeeEEEEecCCc-------HHH-----hhceeecc-----
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-----ELSSTVVFERPQD-------EEF-----VRRWQLAC----- 418 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-----~~~~iv~f~~~~~-------~~~-----~~~~~l~~----- 418 (476)
+|.+|+++++++..+++++|.++|++.+.+.+.. +..++|+|+..+. .++ .++|.++.
T Consensus 332 ~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~ 411 (450)
T d1pmma_ 332 LGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGG 411 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCC
Confidence 9999999999999999999999999988655542 2357899986421 111 24566532
Q ss_pred ---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 419 ---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 419 ---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
....+|+++++++|++++|+|+++|+++.+.+.++
T Consensus 412 ~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 412 EATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 12578999999999999999999999999998875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-32 Score=283.77 Aligned_cols=364 Identities=11% Similarity=0.002 Sum_probs=253.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCc-------ccCcc---chhhHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPF-------IESNY---GVHSRQFEV 142 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~-------~~~~~---~~~~~~le~ 142 (476)
.+|+.|.+.++|+..+.+......+.++++............+++......+..+. ...+. +....++|.
T Consensus 18 ~lP~~G~~~~~i~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 97 (445)
T d3bc8a1 18 KCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITN 97 (445)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHHhccCCcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchHHHHHHH
Confidence 68899999999998888776555444443322111111112223332222222211 11111 112457999
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHH-HHHHHhhC-CCcEEEecCCCchHHHHHHHHcCCeEEEEeC---CCCC
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHG-ILVGREVF-PDGILYASRESHYSVFKAARMYRMECVKVDC---LISG 217 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~a-l~aa~~~~-p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~---~~~g 217 (476)
++.+|+++++|++. ...+++|+|||++++.+ +.+++.+. ++++||+++.+|+|+.++++++|++.+.|++ ++++
T Consensus 98 ~~~~~~~~l~g~~~-~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~~~ 176 (445)
T d3bc8a1 98 SLVLNVIKLAGVHS-VASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDEL 176 (445)
T ss_dssp HHHHHHHHHHTCTT-CCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEE
T ss_pred HHHHHHHHHhCCCc-ccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCccc
Confidence 99999999999985 35688999999776654 44454443 5679999999999999999999999888753 5678
Q ss_pred ccCHHHHHHHHHcCC-CCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc-
Q 011842 218 EIDCADFKAKLLQNK-DKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK- 295 (476)
Q Consensus 218 ~~D~~~Le~~l~~~~-~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~- 295 (476)
.+|+++|+++|.+.+ ..+.+|+++++++++|.++|+++|+++|++||+ |+|+|+||+++........ ...+.
T Consensus 177 ~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~-----~l~vD~a~~~~~~~~~~~~-~~~~~~ 250 (445)
T d3bc8a1 177 RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDI-----PHVVNNAYGLQSSKCMHLI-QQGARV 250 (445)
T ss_dssp ECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-----CEEEECTTTTTCHHHHHHH-HHHHHH
T ss_pred ccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCC-----cEEEEccchhhhhhccccc-hhccCc
Confidence 999999999998753 245688899999999999999999999999999 9999999987654322211 12222
Q ss_pred ccccEEEEcCCCCCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCL 374 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~ 374 (476)
..+|++++++||++++|.++|++++++.. .+.+.. ...+++++...+.+|+++..++..++.+..++..
T Consensus 251 ~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 320 (445)
T d3bc8a1 251 GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK----------MYPGRASASPSLDVLITLLSLGCSGYRKLLKERK 320 (445)
T ss_dssp SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH----------HSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEecCccccccCCCCceeeeCChHHHHHHHH----------HHhhcccCcchHHHHHHHHHHhhhcchhhHHHHH
Confidence 24899999999999999999999998763 333211 1234455567889999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CCeEeecCC-eeEEEEec--CC-----c-HHH---hhceeec---------------------
Q 011842 375 RNAHYLKDRLLDA----GISAMLNEL-SSTVVFER--PQ-----D-EEF---VRRWQLA--------------------- 417 (476)
Q Consensus 375 ~~a~~l~~~L~~~----g~~~~~~~~-~~iv~f~~--~~-----~-~~~---~~~~~l~--------------------- 417 (476)
++++++.++|++. +...+..+. ....++.. .. + ..+ ...+.+.
T Consensus 321 ~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~ 400 (445)
T d3bc8a1 321 EMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGF 400 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEEETT
T ss_pred HHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhhhhc
Confidence 9999999998764 444333222 22222221 11 1 111 1111110
Q ss_pred ---c---cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Q 011842 418 ---C---QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYED 453 (476)
Q Consensus 418 ---~---~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~ 453 (476)
+ ....+|+.++.++|+||||+|+++|+++.+.+.|.
T Consensus 401 g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 401 MSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp TTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 0 02458999999999999999999999999988764
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.6e-30 Score=260.51 Aligned_cols=298 Identities=13% Similarity=0.047 Sum_probs=232.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH--hhCCCcEEEecCCCchHH----HHHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR--EVFPDGILYASRESHYSV----FKAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~--~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~ 209 (476)
.+.+..+++++.+++++|...+ ..+++|+|+|+|+...+.... ...+++.|+++..+|+|. ...++..|++++
T Consensus 63 ~~~~~~e~~R~~ia~~l~~~~~-~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~ 141 (405)
T d1jf9a_ 63 QATEKMENVRKRASLFINARSA-EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELR 141 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCG-GGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCc-ccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEE
Confidence 3456777889999999997642 459999999999887776532 335889999999999884 455566799999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|++++|.+|++.+++++.++|+ +|++++.++.+|.+.|+++|+++|+++|+ ++++|++|+.+..+
T Consensus 142 ~~~~~~~g~~~~~~~~~~i~~~t~---lv~~~~v~~~tG~~~pi~~i~~~~~~~g~-----~~~vD~~q~~g~~~----- 208 (405)
T d1jf9a_ 142 VIPLNPDGTLQLETLPTLFDEKTR---LLAITHVSNVLGTENPLAEMITLAHQHGA-----KVLVDGAQAVMHHP----- 208 (405)
T ss_dssp EECBCTTSCBCGGGHHHHCCTTEE---EEEEESBCTTTCCBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSC-----
T ss_pred EECCCCCCcCCHHHHHHhccCCcE---EEEEecCCCcccccCchHHhhhHHHHcCC-----eeecccceeccccc-----
Confidence 999999999999999998877665 99999999999999999999999999999 99999999988877
Q ss_pred CCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccC------CC--------CCc-ccCCCCChhHHH
Q 011842 290 PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA------SR--------DAT-IMGSRNGHAPIF 353 (476)
Q Consensus 290 ~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~------~~--------~~~-~~~sr~~~~~l~ 353 (476)
+++.+. +|++++++|||+ +|.|+|+++++++.++.+.....+.. .. ... -.|+++....++
T Consensus 209 --id~~~~~~D~~~~s~hK~~-Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~ 285 (405)
T d1jf9a_ 209 --VDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIG 285 (405)
T ss_dssp --CCHHHHTCSEEEEEGGGTT-SCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHH
T ss_pred --cchhhcCCceeeccccccc-cCCCceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHH
Confidence 565554 999999999996 59999999999987654422111100 00 011 236776666677
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--eeEEEEecCC--cHHHh-----hceeec----c--
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--SSTVVFERPQ--DEEFV-----RRWQLA----C-- 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~iv~f~~~~--~~~~~-----~~~~l~----~-- 418 (476)
+..+++.+...|++++.++...+.+++.+.++..+......+. .+++.|..+. ...+. +++.+. |
T Consensus 286 l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~ 365 (405)
T d1jf9a_ 286 LGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAM 365 (405)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhh
Confidence 7788887777788999999999999999999998876665443 5788888764 22221 223222 1
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+.+|+|++.++|.+|||+|+++|+++.+-+
T Consensus 366 ~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~~ 404 (405)
T d1jf9a_ 366 PLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 404 (405)
T ss_dssp HHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 13679999999999999999999999998754
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.97 E-value=6e-31 Score=269.95 Aligned_cols=355 Identities=14% Similarity=0.044 Sum_probs=244.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHhcccccccCCC----CcCCcchHHHHHHH---HHhhCCCCCCcccCcc---chhhHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKHHLGYP----YNLDFDYGALAQLQ---HFSINNLGDPFIESNY---GVHSRQFEV 142 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p----~~~~~~~~~l~~~l---~~~~n~~g~~~~~~~~---~~~~~~le~ 142 (476)
.+|+.|.+..++...+.+......+.+.+.- .........+.... .......++-....+. +.....++.
T Consensus 37 ~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 116 (434)
T d2z67a1 37 KIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTN 116 (434)
T ss_dssp SCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCcccccccccccceecccchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHH
Confidence 5899999999999999887665544322210 00011112222211 1111111111111111 123457888
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCc-hhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC---CCCCc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCG-TEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC---LISGE 218 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~gg-t~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~---~~~g~ 218 (476)
++..|+.+++|.+.. +.++++| ++++..++.+.|...+++.||+++..|+|+.++++++|++.+.|++ +.++.
T Consensus 117 ~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~ 193 (434)
T d2z67a1 117 KILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 193 (434)
T ss_dssp HHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred HHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccC
Confidence 899999999999753 4455444 5555666666666668899999999999999999999999887764 45688
Q ss_pred cCHHHHHHHHHcC--CCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 219 IDCADFKAKLLQN--KDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 219 ~D~~~Le~~l~~~--~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+|+++|+++|+++ .+.+.+|+++.++++.|.++|+++|+++|++||+ |+|||+||+++........ ...+..
T Consensus 194 ~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~-----~l~vD~a~g~~~~~~~~~~-~~~~~~ 267 (434)
T d2z67a1 194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI-----PHIINGAYAIQNNYYLEKL-KKAFKY 267 (434)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTC-----CEEEECTTTTTCHHHHHHH-HHHHTS
T ss_pred CCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCC-----eEEEeccchhhhhhccccc-cccccC
Confidence 9999999999864 3345688899999999999999999999999999 9999999986543211111 011223
Q ss_pred cccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
++|++++++||++++|.++|+++++++ +++.+.. +..++++...+..+|+++..++.+++++..++..+
T Consensus 268 ~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~ 337 (434)
T d2z67a1 268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL----------SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKN 337 (434)
T ss_dssp CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT----------TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCccccccCCCccccccCcHHHHHHHHh----------hcccccccchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 599999999999999999999999876 3444322 12344455678889999999999999999999999
Q ss_pred HHHHHHHHHHhc----CCeEeecCCeeEEEEecCC-cHHHh-----hcee---e--c-----------ccCCEEEEEEcC
Q 011842 376 NAHYLKDRLLDA----GISAMLNELSSTVVFERPQ-DEEFV-----RRWQ---L--A-----------CQGNIAHVVVMP 429 (476)
Q Consensus 376 ~a~~l~~~L~~~----g~~~~~~~~~~iv~f~~~~-~~~~~-----~~~~---l--~-----------~~~~~lRv~~~~ 429 (476)
+++|+.++|++. +...+.++....+++.... ...+. +++. + + ...+.+|++++.
T Consensus 338 ~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~ 417 (434)
T d2z67a1 338 SKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAI 417 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCT
T ss_pred HHHHHHHHHHHhhhhcCceecCCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeEEEecCC
Confidence 999999999874 4433333444444444332 22221 1111 1 0 112679999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIEN 446 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~ 446 (476)
.+|+||||+|+++|+++
T Consensus 418 ~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 418 GVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp TCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 99999999999999863
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.97 E-value=7.1e-30 Score=254.78 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--C
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI--S 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~--~ 216 (476)
.+.+.+.+.+++++|.+. +++|+|||+||+.++.+..+ |||+|++++++|+|+..+++..|++++.+|++. +
T Consensus 47 ~l~~~~~~~~A~~~g~e~----~~~t~g~t~a~~~~~~al~~--~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~ 120 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCDV----ARVTNGAREAKFAVMHSLAK--KDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120 (364)
T ss_dssp CHHHHHHTHHHHHTTSSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT
T ss_pred HHHHHHHHHHHHHhCcCE----EEEECcHHHHHHHHHHHHhC--CCcEEEeecccccccchHHHhccceEEEeeeccccc
Confidence 366677888999999863 88999999999999998876 999999999999999999999999999999863 5
Q ss_pred CccCHHHHHHHHHcCCC--CcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 217 GEIDCADFKAKLLQNKD--KPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~--~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
+.+|+++|+++|++.++ .+.+|++++++|++|.+.|+++|+++|++||+ ++|+|+||+.+.++ .+.
T Consensus 121 ~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i-----~livD~a~~~g~~~-------~~~ 188 (364)
T d2e7ja1 121 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV-----PLLVNGAYAIGRMP-------VSL 188 (364)
T ss_dssp CCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTC-----CEEEECTTTBTTBC-------CCH
T ss_pred cccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccc-----hhhccccchhhhhh-------hcc
Confidence 78999999999987654 35678889999999999999999999999999 99999999876665 343
Q ss_pred cc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 295 KK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 295 ~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
.+ .+|++++|+||++++|.++|+++.+++.++.+.. ...|.........++..+.....+.+++.... +. .+...+
T Consensus 189 ~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~ 266 (364)
T d2e7ja1 189 KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVR-ER-IKRWDE 266 (364)
T ss_dssp HHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHH-HH-GGGHHH
T ss_pred cccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHH-HH-HHHHHH
Confidence 33 3899999999999999899999999887654422 22232221122233333343344444443321 11 122344
Q ss_pred HHHHHHHHHHHHHhcCCeEeecC--CeeEEEEecCCcHHHh----------------hcee-eccc-CCEEEEEEcCCCC
Q 011842 373 CLRNAHYLKDRLLDAGISAMLNE--LSSTVVFERPQDEEFV----------------RRWQ-LACQ-GNIAHVVVMPNVT 432 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~~~--~~~iv~f~~~~~~~~~----------------~~~~-l~~~-~~~lRv~~~~~~T 432 (476)
..++++++.+.|++.|+..+... ....+++..+...+.. ++.. +... ...+|++ +..+|
T Consensus 267 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t 345 (364)
T d2e7ja1 267 EVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLS 345 (364)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCC
T ss_pred HHHHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCC
Confidence 46788889999999998765432 2344444432211110 0111 1111 2344544 56789
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011842 433 IDKLDDFLNELIENRSTW 450 (476)
Q Consensus 433 ~edid~~~~~l~~~~~~~ 450 (476)
+||||+++++|+++.+++
T Consensus 346 ~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 346 DEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998763
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.97 E-value=3.8e-28 Score=247.12 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=228.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH--HhhCCCcEEEecCCCchHHH----HHHHHcCCeEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG--REVFPDGILYASRESHYSVF----KAARMYRMECV 209 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa--~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~ 209 (476)
...++.+++++.+++++|.+.+ ..+++|+++|+++...+... ....+|++|+++..+|.|.. ..++..|++++
T Consensus 63 ~~~~~~e~aR~~ia~llga~~~-~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~ 141 (408)
T d1t3ia_ 63 RATDAYEAVRNKVAKFINARSP-REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLK 141 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCG-GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCc-ccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEe
Confidence 4456777889999999999853 35888899999987766552 22347899999999998754 45566699999
Q ss_pred EEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 210 KVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 210 ~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
.+|.+.++..|.+.|++++.++++ +|++++.++.+|.+.|+++|.++|+++|+ ++|+|++|+.+..|
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~t~---lv~i~~~~~~tG~~~p~~~i~~~~~~~g~-----~~ivDa~q~~g~~~----- 208 (408)
T d1t3ia_ 142 FVQLDEQESFDLEHFKTLLSEKTK---LVTVVHISNTLGCVNPAEEIAQLAHQAGA-----KVLVDACQSAPHYP----- 208 (408)
T ss_dssp EECBCTTSSBCHHHHHHHCCTTEE---EEEEESBCTTTCBBCCHHHHHHHHHHTTC-----EEEEECTTTTTTSC-----
T ss_pred eeeccccccccHHHhhhccCCCce---EEEEecccccccccCcHHHHhhhhhccCc-----eeeeccceeccccc-----
Confidence 999998999999999999877665 99999999999999999999999999999 99999999988887
Q ss_pred CCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC----------------CCcc-cCCCCChhH
Q 011842 290 PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR----------------DATI-MGSRNGHAP 351 (476)
Q Consensus 290 ~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~----------------~~~~-~~sr~~~~~ 351 (476)
+++.+. +|++++++|||+ +|.|+|+++++++....... +..+. ...+ .|+++....
T Consensus 209 --id~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~~~p---~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~ 282 (408)
T d1t3ia_ 209 --LDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPP---FFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEA 282 (408)
T ss_dssp --CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCC---CSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHH
T ss_pred --ccccccCCceEEecccccc-CCCCccccccchhhhhcCCc---eecCCcccccccccccccCCchhhhcCCcHHHHHH
Confidence 666553 999999999996 58999999999986543321 11110 0112 466665556
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC------CeeEEEEecCC--cHHHh-----hceeecc
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE------LSSTVVFERPQ--DEEFV-----RRWQLAC 418 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~------~~~iv~f~~~~--~~~~~-----~~~~l~~ 418 (476)
+++..+++.+...|.+++.++...+.+++.+.+++.+...+..+ ...+++|..+. ...+. +++.+..
T Consensus 283 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~ 362 (408)
T d1t3ia_ 283 IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRS 362 (408)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEec
Confidence 66777788776778899999999999999999999876554421 24688888764 23322 2233321
Q ss_pred -------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 -------------QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 -------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+.+|+++++++|++|||+|+++|+++.+.
T Consensus 363 G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 363 GHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp SCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1357999999999999999999999998874
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.2e-28 Score=243.30 Aligned_cols=296 Identities=14% Similarity=0.113 Sum_probs=216.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh--hCCCcEEEecCCCchHHHHHHH---HcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE--VFPDGILYASRESHYSVFKAAR---MYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~--~~p~~~Vl~s~~~H~S~~~~~~---~~G~~v~~ 210 (476)
.+.++.+++++.+++++|.+++ .++||+|+|+++..++.+... ..+|++|++++..|.|+....+ ..|++++.
T Consensus 45 ~~~~~~~~~R~~iA~~lg~~~~--~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~ 122 (391)
T d1p3wa_ 45 QAEEAVDIARNQIADLVGADPR--EIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 122 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEE
Confidence 3456667788999999999865 499999999999888776542 3489999999999999765554 45999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+|.++++.+|+++++++|+++|+ +|++++++++||.+.|+++|+++|++||+ ++++|++|+.+..+
T Consensus 123 v~~~~~~~~d~~~~~~~i~~~T~---lv~is~~~n~tG~~~~~~~I~~~~~~~~~-----~~ivD~~~~~g~~~------ 188 (391)
T d1p3wa_ 123 LAPQRNGIIDLKELEAAMRDDTI---LVSIMHVNNEIGVVQDIAAIGEMCRARGI-----IYHVDATQSVGKLP------ 188 (391)
T ss_dssp ECCCTTSCCCHHHHHHHCCTTEE---EEECCSBCTTTCCBCCHHHHHHHHHHHTC-----EEEEECTTTBTTBC------
T ss_pred eCCCCCCeEcHHHHHHhCCCCcE---EEEEECCCCCCeeECCHHHHHHHhccCCc-----EEEEeeccccCCcc------
Confidence 99998999999999999987775 89999999999999999999999999999 99999999887776
Q ss_pred CCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
+++... +|++++++|||++ |.++|+++++++....... .+.... .....++........+...+... .+...
T Consensus 189 -~d~~~~~~D~~~~s~~k~~g-~~g~g~~~~~~~~~~~~~~--~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 263 (391)
T d1p3wa_ 189 -IDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKPRVRIEA--QMHGGGHERGMRSGTLPVHQIVGMGEAYRIA-KEEMA 263 (391)
T ss_dssp -CCTTTSCCSEEEEESTTTTS-CSSCEEEEECBTTBCCCCC--SSCSSCTTTTTSCSCCCHHHHHHHHHHHHHH-HHHHH
T ss_pred -ccchhccccccccccccccC-CCceEEEEEecchhcccCC--cccCCccccCcccCcchhhhhhhhhhhhhHH-HHHhh
Confidence 555544 8999999999965 8899999999876443321 111111 11123333322222222223222 23445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecC----CeeEEEEecCC--cHHHhh---ceeec----c----------------
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNE----LSSTVVFERPQ--DEEFVR---RWQLA----C---------------- 418 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~iv~f~~~~--~~~~~~---~~~l~----~---------------- 418 (476)
+..++..+++.++.+.|.+.+...+... ...++.|..+. ...+.. ++.+. |
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~ 343 (391)
T d1p3wa_ 264 TEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGL 343 (391)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEECBCCCC------CCCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEEEccccccCCccchhHHHHHcCC
Confidence 5667778888999999988876554322 13455555442 222222 22111 0
Q ss_pred ----cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 ----QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 ----~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..+.+|++++.++|.+|||+|+++|+++.+++.+
T Consensus 344 ~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 344 NDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp CHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1257999999999999999999999999988754
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=5.4e-29 Score=250.59 Aligned_cols=296 Identities=14% Similarity=0.079 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEe
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVD 212 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~ 212 (476)
..++..++++.+++++|.+++ .+++|+|+|+|+.+++.+.+. .+++.|++++.+|.|+.. .++..|++++.+|
T Consensus 48 ~~~~~~~~r~~la~~~~~~~~--~i~~~~g~t~a~~~~~~~l~~-~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~ 124 (381)
T d1elua_ 48 IQQLIAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDW-HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP 124 (381)
T ss_dssp HHHHHHHHHHHHHHHTTSCGG--GEEEESSHHHHHHHHHHHSCC-CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCcc--cEEEECChHHHhhhcchhhhh-cCCceEEEeccccceeeeccccccccccccccccc
Confidence 456677889999999999764 499999999999988877543 389999999999988654 4455699999999
Q ss_pred CCCCCcc--CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 213 CLISGEI--DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 213 ~~~~g~~--D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.+..... +.+.+++++.+++ .+++++++++++|.+.|+++|.++|++|+. ..++++|+|++|+.+..+
T Consensus 125 ~~~~~~~~~~~~~l~~~i~~~t---~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~-~~~~~~~vD~~~~~g~~~------ 194 (381)
T d1elua_ 125 VAATLNQGDAAAVLANHLGPKT---RLVILSHLLWNTGQVLPLAEIMAVCRRHQG-NYPVRVLVDGAQSAGSLP------ 194 (381)
T ss_dssp CGGGSSSSCHHHHHHTTCCTTE---EEEEEESBCTTTCCBCCHHHHHHHHHHCCS-SSCCEEEEECTTTBTTBC------
T ss_pred cccccccchHHHHHHhhhcccc---cccccccccccccccchhhHHHHHHhhccc-cccccccccccccccccc------
Confidence 8644332 2445555554444 489999999999999999999999999652 223399999999877666
Q ss_pred CCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCcc------ccCCC---------CCcccCCCCChhHHHH
Q 011842 291 KVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE------YLASR---------DATIMGSRNGHAPIFL 354 (476)
Q Consensus 291 ~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~------yl~~~---------~~~~~~sr~~~~~l~~ 354 (476)
+++.+ .+|++++++|||+++|.|+|+++++++..+.+..... +.... .....++++....+.+
T Consensus 195 -~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~ 273 (381)
T d1elua_ 195 -LDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGL 273 (381)
T ss_dssp -CCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHH
T ss_pred -ccccccccccccccccccccccchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhh
Confidence 45544 3999999999999999999999999887655421100 00000 0112345554555666
Q ss_pred HHHHHHhChhcH-HHHHHHHHHHHHHHHHHHHhcCCeEeec---CCeeEEEEecCCc---HHHh-----hceeec--ccC
Q 011842 355 WYTLNRKGYKGF-QKEVQKCLRNAHYLKDRLLDAGISAMLN---ELSSTVVFERPQD---EEFV-----RRWQLA--CQG 420 (476)
Q Consensus 355 ~~~l~~~g~~g~-~~~~~~~~~~a~~l~~~L~~~g~~~~~~---~~~~iv~f~~~~~---~~~~-----~~~~l~--~~~ 420 (476)
.++++.+...|. +.+.++..++++++.+.|++.+...+.. +.+++++|..++. +.+. +++.+. ...
T Consensus 274 ~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~ 353 (381)
T d1elua_ 274 LAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADP 353 (381)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTT
T ss_pred hhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEecCCC
Confidence 677776655553 5567889999999999999986554432 3457888876432 3332 233332 234
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.+|++++.++|.+|||+|+++|+++
T Consensus 354 ~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 354 DCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999999864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.95 E-value=1.1e-26 Score=233.79 Aligned_cols=328 Identities=14% Similarity=0.055 Sum_probs=229.7
Q ss_pred HHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhH
Q 011842 91 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEG 170 (476)
Q Consensus 91 ~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~A 170 (476)
.+++++++|+| +..++.... .....+...|.....++.-.+...+++++.+.+++++|.+. .+++++|..|
T Consensus 47 ~~~FsSndYLG----L~~~p~v~~-a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~----all~~sG~~A 117 (396)
T d2bwna1 47 ITVWCGNDYLG----MGQHPVVLA-AMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA----ALVFSSAYNA 117 (396)
T ss_dssp EEECSCSCTTS----GGGCHHHHH-HHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE----EEEESCHHHH
T ss_pred EEEEEcccccC----cCCCHHHHH-HHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCc----eeeeecchHH
Confidence 46677888888 444422222 22222222222222233333445788888899999999974 8899999999
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcC-CCCcEEEEEeeCCCcccc
Q 011842 171 NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQN-KDKPAIINVNIGTTVKGA 249 (476)
Q Consensus 171 n~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~-~~~p~~vv~t~gtt~tG~ 249 (476)
|+..+.+.....+++.|+.++..|.|+..++++.+++++.++++ |+++|++.+... +.++.+|++....++.|.
T Consensus 118 n~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd 192 (396)
T d2bwna1 118 NDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGD 192 (396)
T ss_dssp HHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCccc
Confidence 99988876544588999999999999999999999999999987 899999888754 334567777777999999
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEEecCcccccc-cccccCCC-CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhh
Q 011842 250 VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM-PFVKKAPK-VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINV 327 (476)
Q Consensus 250 id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~-~~~~~~~~-~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~ 327 (476)
+.|+++|.+++++||+ +++||+||+.+++ +..++... +.....+|+++.++.|.+++ ..|+++.+.+.++.
T Consensus 193 ~apl~~l~~L~~~y~~-----~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~--~Gg~v~~~~~~i~~ 265 (396)
T d2bwna1 193 FGPIKEICDIAEEFGA-----LTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV--FGGYIAASARMVDA 265 (396)
T ss_dssp BCCHHHHHHHHHHHTC-----EEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS--CCEEEEECHHHHHH
T ss_pred ccccHhHHHHhhhhcc-----eeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccc--cccccchhHHHHHH
Confidence 9999999999999999 9999999996665 33322111 12223489999999999985 35666666666554
Q ss_pred hc-CCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC
Q 011842 328 LS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ 406 (476)
Q Consensus 328 l~-~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~ 406 (476)
+. ....|+++. +-+...+....++++.+.....+++.++++.+.+++++.|.+.|+... +..++|+.+..++
T Consensus 266 l~~~~~~~ifSt------alpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~-~~~spIvpv~ig~ 338 (396)
T d2bwna1 266 VRSYAPGFIFST------SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPII-DHGSHIVPVVIGD 338 (396)
T ss_dssp HHHHCHHHHTSB------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCSSSCEEEECCC
T ss_pred HHhhcchhhhcc------cCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcC-CCCCCEEEEEeCC
Confidence 42 223344332 111111122223444443444566678888899999999999988644 4567888887765
Q ss_pred cH-------HHh--hceee--------cccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 407 DE-------EFV--RRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 407 ~~-------~~~--~~~~l--------~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+. .+. +++.+ +.+..++|++++..+|++|||+++++|+++
T Consensus 339 ~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 339 PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 32 222 24543 234568999999999999999999999875
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2e-25 Score=223.89 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=206.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH--HhhCCCcEEEecCCCchHHHHHH---HHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG--REVFPDGILYASRESHYSVFKAA---RMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa--~~~~p~~~Vl~s~~~H~S~~~~~---~~~G~~v~~ 210 (476)
...++.+++++.+++++|++++ .+++++|+|+++..++.+. ....++++|+++...|.++.... +..|++++.
T Consensus 41 ~~~~~~~~aR~~ia~l~~~~~~--~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~ 118 (376)
T d1eg5a_ 41 EANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--cEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEE
Confidence 4556666789999999999865 4999999999988877653 23347788888888887765444 445999999
Q ss_pred EeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCccccccccccc
Q 011842 211 VDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
+|++++|.+|+++++++|+++++ +|++++.++.+|.+.|+++|.++++.+ +. ++++|++|+.+..|
T Consensus 119 vp~~~~~~id~~~l~~~i~~~t~---lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~-----~~~vD~~q~~g~~~---- 186 (376)
T d1eg5a_ 119 VPVDSRGVVKLEELEKLVDEDTF---LVSIMAANNEVGTIQPVEDVTRIVKKKNKET-----LVHVDAVQTIGKIP---- 186 (376)
T ss_dssp CCBCTTSCBCHHHHHHHCCTTEE---EEEEESBCTTTCBBCCHHHHHHHHHHHCTTC-----EEEEECTTTTTTSC----
T ss_pred EcCCCCCeECHHHHHHhcCCCce---EEEEECCccccceeeeehhhhhhhhhcccCc-----eeEEEeeecccccc----
Confidence 99999999999999999987765 999999999999999999999999776 67 99999999988777
Q ss_pred CCCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC--CCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 289 APKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 289 ~~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~--~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
+++.+. +|++++++|||+ +|.|+|+++++++.. + .+.+.... .....+..+............. ....
T Consensus 187 ---~d~~~~~~D~~~~s~~K~~-gp~G~~~l~~~~~~~--~--~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 257 (376)
T d1eg5a_ 187 ---FSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVP--I--RPLIHGGGQERGLRSGTQNVPGIVGAARAMEI-AVEE 257 (376)
T ss_dssp ---CCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSC--C--CCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH-HHHT
T ss_pred ---ccccccCccceecccceee-cCCCceeEEeccCcc--c--CCcccCCCCcccccCCcccchhhhhHHHHhhc-cccc
Confidence 555443 999999999996 599999999987631 1 11111111 1112233322222222222222 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC--cHHHh-----hceeec----c-------------
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ--DEEFV-----RRWQLA----C------------- 418 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~--~~~~~-----~~~~l~----~------------- 418 (476)
..........+..++.+.|...+........ ..++.+..+. ...+. +++.+. |
T Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~ 337 (376)
T d1eg5a_ 258 LSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDA 337 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHH
T ss_pred hhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCCCHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHH
Confidence 5566667777888899999887665543322 3556666553 22221 122221 0
Q ss_pred -------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 419 -------QGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 -------~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+.+|++++.++|+||||+|+++|+++++
T Consensus 338 ~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 338 MGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp TTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 124699999999999999999999999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-25 Score=225.78 Aligned_cols=300 Identities=12% Similarity=0.086 Sum_probs=226.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEEEe
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKVD 212 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~v~ 212 (476)
....++.+++++.+++++|.+. ++.++||.|||+++..++..... +++.+++....|++.. ..+...+..+..++
T Consensus 48 ~~f~~i~~ea~~~l~~llg~~~-~~~ii~~gsgT~a~~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (388)
T d1h0ca_ 48 KDMYQIMDEIKEGIQYVFQTRN-PLTLVISGSGHCALEAALVNVLE--PGDSFLVGANGIWGQRAVDIGERIGARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC-SEEEEESSCHHHHHHHHHHHHCC--SSCCEEECBSSHHHHHHHHHHHHHC--CBCCB
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-CcEEEEcCcHHHHHHHHHHHhhc--cCCceeeecccceeeeeccccccccccccccc
Confidence 3567899999999999999985 35688999999999999888765 8888888888988754 44455677777777
Q ss_pred CCCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 213 CLISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.+..+.+|.+.+++.+.. +++ +|.+++.+|.+|.+.|+++|+++|++||+ ++++|++++.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~n~tG~i~pi~~i~~~~~~~g~-----~~~vD~~qs~g~~~------- 189 (388)
T d1h0ca_ 125 KDPGGHYTLQEVEEGLAQHKPV---LLFLTHGESSTGVLQPLDGFGELCHRYKC-----LLLVDSVASLGGTP------- 189 (388)
T ss_dssp CCTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHTTTC-----EEEEECTTTTTTSC-------
T ss_pred cCCccccchHHHHHHhccCCcc---eEEEeeeeeccccccCHHHHHHHhhcccc-----cceecccccccccc-------
Confidence 777788999999887765 444 88899999999999999999999999999 99999999987776
Q ss_pred CCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-----CccccC-----------CCCCcccCCCCChhHHHH
Q 011842 292 VSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-----NVEYLA-----------SRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 292 ~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-----~~~yl~-----------~~~~~~~~sr~~~~~l~~ 354 (476)
+++.+. +|++++++|||+++|.++|+++.++..++.+.. ...|+. .......++.+......+
T Consensus 190 ~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 269 (388)
T d1h0ca_ 190 LYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSL 269 (388)
T ss_dssp CCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHH
T ss_pred ccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHH
Confidence 555554 999999999999999999999999876554321 111211 011122334433334445
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCC---cHHHh----hc--eeec----
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQ---DEEFV----RR--WQLA---- 417 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~---~~~~~----~~--~~l~---- 417 (476)
..++..+...|++.+.++..++++++++.+.+.|+..+.+.. ..+++|..|+ ..++. ++ ..+.
T Consensus 270 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~ 349 (388)
T d1h0ca_ 270 RESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLG 349 (388)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCG
T ss_pred HHHHHHHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCch
Confidence 566666666788999999999999999999998876654322 3577888764 23332 22 2222
Q ss_pred -ccCCEEEEE-EcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 418 -CQGNIAHVV-VMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 418 -~~~~~lRv~-~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
..++.+||+ +.+++|.||||+++++|+++.+++.|
T Consensus 350 ~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 350 PSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred hhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 135689999 56889999999999999999988754
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=8.1e-26 Score=227.63 Aligned_cols=324 Identities=12% Similarity=0.028 Sum_probs=225.7
Q ss_pred HHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchh
Q 011842 90 KTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTE 169 (476)
Q Consensus 90 ~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~ 169 (476)
++++..+++|+|....+.....+...+..++.+..+++... +...+..++.+.+++++|.+. .+++++|++
T Consensus 39 ~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~-----g~~~~~~~lE~~LA~~~g~e~----al~~~SG~~ 109 (383)
T d1bs0a_ 39 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVS-----GYSVVHQALEEELAEWLGYSR----ALLFISGFA 109 (383)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTT-----CCCHHHHHHHHHHHHHHTCSE----EEEESCHHH
T ss_pred EEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCcccccc-----CcchHHHHHHHHHHHhcCCCc----eEEecccch
Confidence 35667777888833222111122222233334344433333 334777788888999999874 889999999
Q ss_pred HHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccc
Q 011842 170 GNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGA 249 (476)
Q Consensus 170 An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~ 249 (476)
||..++.+... +++.|++++..|.|+..+++..+.+++.++++ |+++|++.+.+.+....+|++....+++|.
T Consensus 110 an~~~i~al~~--~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~ 182 (383)
T d1bs0a_ 110 ANQAVIAAMMA--KEDRIAADRLSHASLLEAASLSPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGD 182 (383)
T ss_dssp HHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHTSSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCC
T ss_pred hhHHHHHhhcC--CCceEEeeccccHHHhhccccCCCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCc
Confidence 99999988876 89999999999999999999999999999987 999999999887665667878888999999
Q ss_pred ccCHHHHHHHHHHhCCCCCceEEEEecCcccccccc-cccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhh
Q 011842 250 VDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF-VKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVL 328 (476)
Q Consensus 250 id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~-~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l 328 (476)
+.|+++|.++|++||+ +++||+||+.+++.. ........ ....|.+..++.|.+++ ..|++..+.+..+.+
T Consensus 183 i~pl~~l~~l~~~~~~-----~livDeah~~gv~G~~g~G~~~~~-~~~~~~~~~t~~ka~g~--~Gg~v~~~~~~~~~l 254 (383)
T d1bs0a_ 183 SAPLAEIQQVTQQHNG-----WLMVDDAHGTGVIGEQGRGSCWLQ-KVKPELLVVTFGKGFGV--SGAAVLCSSTVADYL 254 (383)
T ss_dssp BCCHHHHHHHHHHTTC-----EEEEECTTTTTTSSGGGCCHHHHT-TCCCSEEEEESSSTTSS--CCEEEEECHHHHHHH
T ss_pred ccchhHHHHHHHhcCc-----EEEeecceeeeecCCcccchHHHc-CCccccccccccccccc--cccccccchhHHHHH
Confidence 9999999999999999 999999999776532 12110011 11256677778898875 356777776665544
Q ss_pred c-CCccccCCCCCcccCCCCChhHH--HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecC
Q 011842 329 S-SNVEYLASRDATIMGSRNGHAPI--FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERP 405 (476)
Q Consensus 329 ~-~~~~yl~~~~~~~~~sr~~~~~l--~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~ 405 (476)
. ....|+++ .+..++. +..++++.+.....+.+.++..++..++.+.|++.|+.. .+..++|+.+..+
T Consensus 255 ~~~~~~~~~s--------~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~-~~~~s~Ii~v~~g 325 (383)
T d1bs0a_ 255 LQFARHLIYS--------TSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTL-ADSCSAIQPLIVG 325 (383)
T ss_dssp HHHCHHHHSS--------BCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEE-CSCCSSBCCEEEE
T ss_pred Hhhchhhhhc--------ccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCCCEEEEEEC
Confidence 2 22334332 2222221 222344444344567788889999999999999999754 3445666655554
Q ss_pred CcH---HH-----hhceee--------cccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 406 QDE---EF-----VRRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 406 ~~~---~~-----~~~~~l--------~~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
+.. .+ .+++.+ +.+...+|++++..+|+||||+++++|..+
T Consensus 326 ~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 326 DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 322 11 234433 233457999999999999999999999865
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.94 E-value=8.1e-26 Score=228.66 Aligned_cols=295 Identities=11% Similarity=0.035 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH----hhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR----EVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~----~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
.++.+++++.+++++|+++++ ++||+++|++++..+.... ...+++.|++++..|++........+.++..++.
T Consensus 69 ~~~~e~~R~~iA~llga~~~e--i~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
T d1qz9a_ 69 RDLSERLGNRLATLIGARDGE--VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY 146 (404)
T ss_dssp GGHHHHHHHHHHTTTTCCTTS--EEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCCc--EEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeece
Confidence 467788999999999999765 9999999999887665322 2346777777777777765444444444444444
Q ss_pred CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 214 LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 214 ~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
+.++..+++.++++|.++|+ +|++++.++.+|.+.|+++|+++|+++|+ ++|||++|+.+..+ ++
T Consensus 147 ~~~~~~~~~~~~~~i~~~T~---lV~i~~v~~~tG~~~pv~~i~~~~~~~~~-----~~~vD~~q~~g~~~-------~~ 211 (404)
T d1qz9a_ 147 TLRLVDSPEELPQAIDQDTA---VVMLTHVNYKTGYMHDMQALTALSHECGA-----LAIWDLAHSAGAVP-------VD 211 (404)
T ss_dssp EEEEESSGGGHHHHCSTTEE---EEEEESBCTTTCBBCCHHHHHHHHHHHTC-----EEEEECTTTTTTSC-------CC
T ss_pred eccccccchhHHHhcCCCce---EEEEecccccccceecHHHHhcccccccc-----ceeEEeeccccccc-------cc
Confidence 44566788899999988775 99999999999999999999999999999 99999999988776 45
Q ss_pred Ccc-cccEEEEcCCCCCCCCCC-ceeEEeehhhhhhhcCCccccCCC--------C--------CcccCCCCChhHHHHH
Q 011842 294 FKK-PIGSVSVSGHKFVGCPMP-CGVQITRMEHINVLSSNVEYLASR--------D--------ATIMGSRNGHAPIFLW 355 (476)
Q Consensus 294 ~~~-~~Dsi~~s~hK~l~~p~~-~G~l~~~~~~~~~l~~~~~yl~~~--------~--------~~~~~sr~~~~~l~~~ 355 (476)
+.. .+|++++++|||++.|.+ +|+++.++.+.+.+........+. . ....++........+.
T Consensus 212 ~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (404)
T d1qz9a_ 212 LHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVE 291 (404)
T ss_dssp HHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHH
T ss_pred cccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHH
Confidence 544 389999999999976555 788888877654432211111000 0 0112333322333444
Q ss_pred HHHHHhChhcHHHHHHHHHHHHHH---HHHHHHh-cCCeEeecCC----eeEEEEecCCcHHHhhce-----eec-ccCC
Q 011842 356 YTLNRKGYKGFQKEVQKCLRNAHY---LKDRLLD-AGISAMLNEL----SSTVVFERPQDEEFVRRW-----QLA-CQGN 421 (476)
Q Consensus 356 ~~l~~~g~~g~~~~~~~~~~~a~~---l~~~L~~-~g~~~~~~~~----~~iv~f~~~~~~~~~~~~-----~l~-~~~~ 421 (476)
.++..+...+...+.++...+.++ +.+.+.. .++.++.+.. ++++.|..++...+.+.+ ... +.++
T Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~ 371 (404)
T d1qz9a_ 292 CGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPR 371 (404)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTT
T ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCCHHHHHHHHHHCCCEEeecCCC
Confidence 555555445555555444444444 4444444 3554443322 478899988765543332 222 3468
Q ss_pred EEEEEEc-CCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVM-PNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~-~~~T~edid~~~~~l~~~~~~ 449 (476)
.+|+++. .++|.+|||+|+++|+++.++
T Consensus 372 ~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 372 IMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999985 589999999999999998875
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1e-25 Score=228.23 Aligned_cols=327 Identities=11% Similarity=0.074 Sum_probs=223.5
Q ss_pred HHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhH
Q 011842 91 TLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEG 170 (476)
Q Consensus 91 ~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~A 170 (476)
++++.+++|+|+.. ++.... .+...+...|..+..++...+...+.+++.+.+++++|.+. .+++++|++|
T Consensus 47 ~l~f~s~dYLGl~~----hp~v~~-a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~----al~~~SG~~A 117 (401)
T d1fc4a_ 47 VINFCANNYLGLAN----HPDLIA-AAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMED----AILYSSCFDA 117 (401)
T ss_dssp EEECCCSCTTSCTT----CHHHHH-HHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSE----EEEESCHHHH
T ss_pred EEEEEccccccccC----CHHHHH-HHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCc----eEEecchhhh
Confidence 45667777888443 322222 22222222222222232222234666777888899999874 8999999999
Q ss_pred HHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHc---CCCCcEEEEEeeCCCcc
Q 011842 171 NLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVK 247 (476)
Q Consensus 171 n~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~t 247 (476)
|..++.+... +++.|+++...|.|+..+++..++++..++++ |++++++++.+ .+....+|++....++.
T Consensus 118 n~~~i~~l~~--~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~ 190 (401)
T d1fc4a_ 118 NGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMD 190 (401)
T ss_dssp HHTTHHHHCC--TTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTT
T ss_pred hHHHHHHhcC--CCcEEEeCCcchHHHHccccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCC
Confidence 9999988765 89999999999999999999999999988876 77777776643 34444567666668899
Q ss_pred ccccCHHHHHHHHHHhCCCCCceEEEEecCccccccc-ccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhh
Q 011842 248 GAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMP-FVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 325 (476)
Q Consensus 248 G~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~-~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~ 325 (476)
|.+.||++|.++|++||+ ++++|+||+++++. ...... .+.....+|+++.++.|.+++ ...|++..+.+.+
T Consensus 191 G~~~~L~~l~~L~~~~~a-----~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg-~~Gg~v~g~~~~~ 264 (401)
T d1fc4a_ 191 GVIANLKGVCDLADKYDA-----LVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGG-ASGGYTAARKEVV 264 (401)
T ss_dssp TEECCHHHHHHHHHHTTE-----EEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS-SSCEEEEECHHHH
T ss_pred CchhhhhHHHHHHhhcCc-----EEEehhhhccccccCCCCccchhccCCCCCeEEEeeccccccc-CCcccccCCHHHH
Confidence 999999999999999999 99999999876552 112111 122223489999999999964 4467777777766
Q ss_pred hhhc-CCccccCCCCCcccCCCCChhHHH--HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEE
Q 011842 326 NVLS-SNVEYLASRDATIMGSRNGHAPIF--LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVF 402 (476)
Q Consensus 326 ~~l~-~~~~yl~~~~~~~~~sr~~~~~l~--~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f 402 (476)
+.+. ....|+++ .+..++.. ...+++.+ ...+++.+++.++.++|++.+.+.++... ...++|+.+
T Consensus 265 ~~l~~~~~~~~~s--------~~l~p~~~~aa~~~l~~~--~~~~~~~~~l~~~~~~~~~~l~~~g~~~~-~~~~pIv~v 333 (401)
T d1fc4a_ 265 EWLRQRSRPYLFS--------NSLAPAIVAASIKVLEMV--EAGSELRDRLWANARQFREQMSAAGFTLA-GADHAIIPV 333 (401)
T ss_dssp HHHHHHCHHHHHS--------CCCCHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEE
T ss_pred HHHHcCChhhhhc--------CCCCHHHHHHHHhhhccc--ccCHHHHHHHHHHHHHHHhhhcccCCccC-CCCCCEEEE
Confidence 5442 22334322 22222222 22223322 33467889999999999999999987543 345677766
Q ss_pred ecCCcH---HH-----hhceee--------cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 403 ERPQDE---EF-----VRRWQL--------ACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 403 ~~~~~~---~~-----~~~~~l--------~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
..++.. .+ .+++.+ +.....+|++++..+|+||||+++++|+++.+++
T Consensus 334 ~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 334 MLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 554432 12 233333 2334679999999999999999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.93 E-value=3.6e-24 Score=216.02 Aligned_cols=331 Identities=10% Similarity=0.046 Sum_probs=233.9
Q ss_pred cccccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchh
Q 011842 57 VHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVH 136 (476)
Q Consensus 57 ~~~~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~ 136 (476)
.+..+|..++|++.. |+.+++.+++.+..+.+ +|+...+
T Consensus 30 ~~vi~l~~G~p~~~~---------p~~v~~a~~~~~~~~~~---~Y~~~~G----------------------------- 68 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNT---------PKHIVEAAKAALEQGKT---RYGPAAG----------------------------- 68 (388)
T ss_dssp CCCEECCCSSCSSCC---------CHHHHHHHHHHHHTTCC---SCCCTTC-----------------------------
T ss_pred CCeEECCCCCCCCCC---------CHHHHHHHHHHHhcCCC---CCCCCCC-----------------------------
Confidence 344666666776644 56677777666654332 4444333
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
..++++++.+|+.+..|+..++.++++|+|+++++..++.+..+ ||+.|++++++|..+...++..|.+++.++.+.
T Consensus 69 ~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~--~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~ 146 (388)
T d1j32a_ 69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE--PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVE 146 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGG
T ss_pred CHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhC--CCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccc
Confidence 35899999999999999886667799999999999999888766 999999999999999999999999999998864
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++.+|+++|++++.+++ .++++++|+|+||.+-+ +++|+++|++||+ ++++|++|+...++...+.+.
T Consensus 147 ~~~~~d~~~l~~~~~~~~---~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~-----~iI~De~Y~~~~~~~~~~~s~ 218 (388)
T d1j32a_ 147 TQFKVSPEQIRQAITPKT---KLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGL-----WVLSDEIYEKILYDDAQHLSI 218 (388)
T ss_dssp GTTCCCHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTCBCTTCCCCCG
T ss_pred cccCCCHHHHHHhCCCCC---eEEEECCCCCCCCcccchhhhhhhhcccccCCe-----EEEchhhhhcccccCCCCCCH
Confidence 35799999999886554 37888899999999855 7888899999999 999999998776654443322
Q ss_pred CCCcc---cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 292 VSFKK---PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 292 ~~~~~---~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
..... .-.++..|++|.++ .++++||++.++++++.+.....+... + .....++++...+ +.+.
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~q~a~~~~~~~~~~~ 288 (388)
T d1j32a_ 219 GAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTS-------N---VCTFAQYGAIAAYENSQDC 288 (388)
T ss_dssp GGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTTTC-------S---CCHHHHHHHHHHHHSCSHH
T ss_pred HHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhhhccc-------c---ccHHHHHHHhhcccchHHH
Confidence 22211 12356677889876 679999999998877655332222111 1 1123333333333 4456
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCC----cHHHh----h--ceee-cc----cCCEEEEEEcC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQ----DEEFV----R--RWQL-AC----QGNIAHVVVMP 429 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~----~~~~~----~--~~~l-~~----~~~~lRv~~~~ 429 (476)
+++..++..++++++.+.|++.+...+..|.. ..+++..+. +.++. + +..+ +. ..+++|+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~- 367 (388)
T d1j32a_ 289 VQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA- 367 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe-
Confidence 78888888899999999999874444444544 444444332 22332 2 2222 21 2478999885
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~~~ 450 (476)
+++++|+..++.|+++.+.+
T Consensus 368 -~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 368 -TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 68899999999999888765
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=1.7e-24 Score=218.01 Aligned_cols=343 Identities=11% Similarity=0.064 Sum_probs=232.4
Q ss_pred CCccceeeec--cCCcccccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhh
Q 011842 44 HKTAEKEIVL--GKNVHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSI 121 (476)
Q Consensus 44 ~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~ 121 (476)
..+++|+++. ....+...|..++|++.. |+.+.+.+.+.+..+.+ +|+...+
T Consensus 10 ~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~---------p~~v~~~~~~a~~~~~~---~Y~~~~G-------------- 63 (388)
T d1gdea_ 10 SASEIRKLFDIAAGMKDVISLGIGEPDFDT---------PQHIKEYAKEALDKGLT---HYGPNIG-------------- 63 (388)
T ss_dssp CCCHHHHHHHHHHHCTTCEECCCCSCCSCC---------CHHHHHHHHHHHHTTCC---SCCCTTC--------------
T ss_pred CccHHHHHHHHHhCCCCeEECCCCCCCCCC---------CHHHHHHHHHHHhcCcc---CCCCCcC--------------
Confidence 3456777763 122334667777776544 56677777766655433 4554443
Q ss_pred CCCCCCcccCccchhhHHHHHHHHHHHHHHcCCC-CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH
Q 011842 122 NNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE-NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA 200 (476)
Q Consensus 122 n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~-~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~ 200 (476)
..++++++.+|+.+..+.. .++.++++|+|+++++..++.+..+ ||+.|++++++|..+...
T Consensus 64 ---------------~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~--~gd~vlv~~P~y~~~~~~ 126 (388)
T d1gdea_ 64 ---------------LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLK--DGEEVLIPTPAFVSYAPA 126 (388)
T ss_dssp ---------------CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCC--TTCEEEEEESCCTTHHHH
T ss_pred ---------------CHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcC--CCCEEEECCCCcHHHHHH
Confidence 3589999999998766653 2334699999999999998887766 999999999999999999
Q ss_pred HHHcCCeEEEEeCCC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEe
Q 011842 201 ARMYRMECVKVDCLI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCD 275 (476)
Q Consensus 201 ~~~~G~~v~~v~~~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD 275 (476)
++.+|++++.+|+++ ++.+|+++|++.+.+++ .++++++++|+||.+- .+++|+++|++|++ +|++|
T Consensus 127 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~-----~vi~D 198 (388)
T d1gdea_ 127 VILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT---RALIINSPCNPTGAVLTKKDLEEIADFVVEHDL-----IVISD 198 (388)
T ss_dssp HHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEE
T ss_pred HHHcCCEEEEeecccccCCCCCHHHHHHhCccCC---eEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCC-----EEEEE
Confidence 999999999999864 45799999999886654 4788889999999994 58889999999999 99999
Q ss_pred cCcccccccccccCCCCCCcc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 276 GALFGLMMPFVKKAPKVSFKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 276 ~a~~g~~~~~~~~~~~~~~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
++|+.+........+...... .-.++..|+.|.++ +++++|+++++++.++.+........ .+ ...+
T Consensus 199 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~~~~-------~~---~~~~ 268 (388)
T d1gdea_ 199 EVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNA-------TC---PVTF 268 (388)
T ss_dssp CTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTT-------CS---CCHH
T ss_pred cCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhcccccc-------cc---cccc
Confidence 999876554333322222221 12356678889776 67999999999886654432221111 11 1123
Q ss_pred HHHHHHHHhCh----hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC----cHHHh----h--ceee-c
Q 011842 353 FLWYTLNRKGY----KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ----DEEFV----R--RWQL-A 417 (476)
Q Consensus 353 ~~~~~l~~~g~----~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~----~~~~~----~--~~~l-~ 417 (476)
.+.++..++.. +.+....++..+....+.+.|...++....+..++.++++.++ ..++. + +..+ +
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~P 348 (388)
T d1gdea_ 269 IQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVP 348 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEE
T ss_pred chhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhccccccCCCceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEe
Confidence 33333333322 2234455566667788888888887765544445555554432 23332 2 2222 1
Q ss_pred ------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 ------CQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 ------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
...+++|+++. ++.|+++..++.|.++.++
T Consensus 349 G~~F~~~~~~~iRis~~--~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 349 GSAFGKAGEGYVRISYA--TAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp GGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred chhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 12478999885 6789999999999887765
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=8.1e-23 Score=203.12 Aligned_cols=296 Identities=14% Similarity=0.085 Sum_probs=202.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH-HHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS-VFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S-~~~~~~~~G~~v~~v~~~ 214 (476)
...++.+++++.+++++|.+++...+++|+|||+++..++..... .++.+++++...+.+ +.......+.....+...
T Consensus 30 ~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (361)
T d1m32a_ 30 YNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCG 108 (361)
T ss_dssp HHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh-hccccceeeehhhhhhHHHHhhhhhccccccccc
Confidence 345677789999999999987554577888999999888776553 234445554444433 334455557766666655
Q ss_pred CCCccCH--HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 215 ISGEIDC--ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 215 ~~g~~D~--~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
.....+. +.+...+.+++ .+|.+++.+|.+|.+.|+++|+++|++||+ ++++|++|+.+..+ +
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~-----~~~vDa~qs~G~~~-------~ 173 (361)
T d1m32a_ 109 EVARPDVQAIDAILNADPTI---SHIAMVHSETTTGMLNPIDEVGALAHRYGK-----TYIVDAMSSFGGIP-------M 173 (361)
T ss_dssp TTSCCCHHHHHHHHHHCTTC---CEEEEESEETTTTEECCHHHHHHHHHHHTC-----EEEEECTTTTTTSC-------C
T ss_pred ccCCccchhhHHHHHhccCc---cceEEEeeecccccchhhhhhhhhhcccce-----eeEeecccccCccc-------c
Confidence 4444343 33333333344 489999999999999999999999999999 99999999988777 5
Q ss_pred CCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC-----------CCCcccCCCCChhHHHHHHHHHH
Q 011842 293 SFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS-----------RDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 293 ~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~-----------~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
++.+. +|++++++|||+++|.|.|+++++++..+.......-... ......++.+....+.+..++..
T Consensus 174 d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 253 (361)
T d1m32a_ 174 DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE 253 (361)
T ss_dssp CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH
T ss_pred cccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHH
Confidence 65554 9999999999999999999999999865543221110000 01122344444444555555555
Q ss_pred hChhc-HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--e-eEEEEecCCc-----HHHh-----hceeec----ccCCE
Q 011842 361 KGYKG-FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--S-STVVFERPQD-----EEFV-----RRWQLA----CQGNI 422 (476)
Q Consensus 361 ~g~~g-~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~iv~f~~~~~-----~~~~-----~~~~l~----~~~~~ 422 (476)
+..++ ......+...+++.+.+.++..|.....++. + .+++|..|.+ .++. +++.+. ..++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~ 333 (361)
T d1m32a_ 254 LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDC 333 (361)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCE
T ss_pred HHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCE
Confidence 54454 4555667778889999999998876544432 2 4566776532 2232 233332 34678
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 423 AHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 423 lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+|++++.++|++|||+|+++|+++.
T Consensus 334 ~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 334 FRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 9999888899999999999999874
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.4e-23 Score=211.00 Aligned_cols=290 Identities=14% Similarity=0.048 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
..++++++.+|+.+..|.+.+..++++|+|+++|+..++.+..+ +|+.|+++.+.|..+...++.+|++++.+|+++
T Consensus 70 ~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~ 147 (382)
T d1b5pa_ 70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILD--PGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPE 147 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred CHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCC--CCCEEEECCCCcHHHHHHHHHhcCeEEEEecccc
Confidence 45999999999999888876667799999999999999888876 899999999999999999999999999999864
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+..+|+++|++++.+++ .+++++++.||||.+- .+++|+++|++||+ ||++|++|+.+.++.....+.
T Consensus 148 ~~~~~d~~~l~~~~~~~~---~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~~~~~~~ 219 (382)
T d1b5pa_ 148 EGFVPDPERVRRAITPRT---KALVVNSPNNPTGAVYPKEVLEALARLAVEHDF-----YLVSDEIYEHLLYEGEHFSPG 219 (382)
T ss_dssp GTTCCCHHHHHTTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBSSSCCCCGG
T ss_pred cccCCCHHHHHHhCCCCC---eEEEECCCCCCcchhCCHHHHHHHHHHHHHcCe-----EEEEEccccceecCCCCCCHH
Confidence 35789999998875544 4777889999999994 48889999999999 999999998776643322221
Q ss_pred CCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcHHH
Q 011842 292 VSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGFQK 368 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~~~ 368 (476)
....+.+ ++..|+.|.++ +++++||++.++++++.+.....+.. .+.+......+...+... ...-.+.
T Consensus 220 ~~~~~~~-i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (382)
T d1b5pa_ 220 RVAPEHT-LTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQST-------TSPDTIAQWATLEALTNQEASRAFVEM 291 (382)
T ss_dssp GTCTTTE-EEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHTTT-------CSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HcCCCCE-EEEecchhhccCcHhheEEEEECHHHHHHHHHHHHhcc-------cCcccccccccccccccccchhHHHHH
Confidence 1222222 44566778775 67999999999887665532211111 111111111111112111 1122344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---c-HHHh-----hceeec-----ccCCEEEEEEcCCCCHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---D-EEFV-----RRWQLA-----CQGNIAHVVVMPNVTID 434 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---~-~~~~-----~~~~l~-----~~~~~lRv~~~~~~T~e 434 (476)
..+....+++.+.+.+.+.|+....+..+..+++..++ + ..+. ++..+. ...+.+|+++. .++|
T Consensus 292 ~~~~~~~~~~~~~~~l~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~--~~~e 369 (382)
T d1b5pa_ 292 AREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEE 369 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHH
T ss_pred HHHHHHhhhhHHHHHHhhcCCeEecCCceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCCCeEEEEEc--CCHH
Confidence 45556667778888888888765545555666666532 2 2222 122221 12368998874 5788
Q ss_pred HHHHHHHHHHHH
Q 011842 435 KLDDFLNELIEN 446 (476)
Q Consensus 435 did~~~~~l~~~ 446 (476)
+|+..++.|.++
T Consensus 370 ~l~~al~rl~~~ 381 (382)
T d1b5pa_ 370 NLRKALERFARV 381 (382)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=6.3e-23 Score=208.77 Aligned_cols=299 Identities=12% Similarity=0.028 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHHHHHcCCC-CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 137 SRQFEVGVLDWFARLWELE-NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~-~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
..++++++++|+.+..|.+ .++.++++|+|+++++..++.+..+ ||+.|+++++.|..+...++..|++++.+|.++
T Consensus 82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~ 159 (420)
T d1vp4a_ 82 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD--DESYCVLDDPAYLGAINAFRQYLANFVVVPLED 159 (420)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhc--cccccccccccccchhHHHHHHhhhcccccccc
Confidence 4599999999999999876 3456799999999999998888776 999999999999999999999999999999875
Q ss_pred CCccCHHHHHHHHHc---C---CCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccc
Q 011842 216 SGEIDCADFKAKLLQ---N---KDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFV 286 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~---~---~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~ 286 (476)
..+|++.++..+.+ . ++...+++++++.|+||.+- .+++|+++|++|++ ++++|++|+.+.+...
T Consensus 160 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i-----~ii~De~y~~l~~~~~ 233 (420)
T d1vp4a_ 160 -DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL-----FIVEDDPYGALRYEGE 233 (420)
T ss_dssp -TEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECSSTTCBCSSC
T ss_pred -cccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccc-----cccccchhhhccccCc
Confidence 45789888877643 1 12224566778899999884 57899999999999 9999999987665432
Q ss_pred ccCCCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC---
Q 011842 287 KKAPKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--- 362 (476)
Q Consensus 287 ~~~~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--- 362 (476)
...+...... ...++..+++|++++++++|+++.++++++.+.....+.. .+.+ .+.++++...+.
T Consensus 234 ~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~~~~~~~-------~~~~---~~~q~~~a~~l~~~~ 303 (420)
T d1vp4a_ 234 TVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSAD-------LCSP---AITHRLAARYLERYD 303 (420)
T ss_dssp CCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHH-------SSCC---HHHHHHHHHHHHHSC
T ss_pred ccccccccccccceeEEeccccccccccccccccccchhhhhhhhhhhhcc-------ccCc---hhhhhhhhhhccccc
Confidence 2221111111 2445677889999999999999999887766533222211 1111 222222222221
Q ss_pred -hhcHHHHHHHHHHHHHHHHHHHHhc-----CCeEeecCCeeEEEEecCC---cHHHh-----hceee-c--------cc
Q 011842 363 -YKGFQKEVQKCLRNAHYLKDRLLDA-----GISAMLNELSSTVVFERPQ---DEEFV-----RRWQL-A--------CQ 419 (476)
Q Consensus 363 -~~g~~~~~~~~~~~a~~l~~~L~~~-----g~~~~~~~~~~iv~f~~~~---~~~~~-----~~~~l-~--------~~ 419 (476)
.+.+++.++...+..+.+.+.|++. |+....+..+..+++..++ ..++. ++..+ + ..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~~~~ 383 (420)
T d1vp4a_ 304 LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEP 383 (420)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCC
T ss_pred ccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCCCCC
Confidence 1234555666666777777777663 4433333445566666653 22222 22322 1 11
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 011842 420 GNIAHVVVMPNVTIDKLDDFLNELIENRSTWYEDG 454 (476)
Q Consensus 420 ~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~~~~ 454 (476)
.+.+|+++. ..+.++++..++.|.++.+++.|..
T Consensus 384 ~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~~ 417 (420)
T d1vp4a_ 384 SPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKEK 417 (420)
T ss_dssp CSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHhh
Confidence 368999874 3578999999999999998887653
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=9.5e-22 Score=197.15 Aligned_cols=302 Identities=12% Similarity=0.041 Sum_probs=220.3
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHh-hCCCcEEEecCCCchHH--HHHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGRE-VFPDGILYASRESHYSV--FKAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~-~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~ 210 (476)
...++.+++.+.++++++.. .+...++||+|||+++..++..... ..|++.|++....|++. ...++..|.....
T Consensus 33 ~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~ 112 (382)
T d2bkwa1 33 EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDV 112 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccc
Confidence 45567777888888888852 2234588999999999998887643 35789999999888874 4556667888777
Q ss_pred EeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhC--CCCCceEEEEecCcccccccccc
Q 011842 211 VDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESG--FTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 211 v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g--~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
+...+ ....+.+.+++++.... +.++.+++..+.+|...|++++.++|++++ + ++|||++++.+..|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~-----~~~vDa~qs~g~~p--- 182 (382)
T d2bkwa1 113 VRPLKIGESVPLELITEKLSQNS--YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPET-----FFVVDAVCSIGCEE--- 182 (382)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSC--CSEEEEESEETTTTEECCHHHHHHHHHHHCTTS-----EEEEECTTTTTTSC---
T ss_pred ccccCCCCccchhHHHHHhhhcc--chheeeeeccccccccccchhhhhhccccccce-----eeeeeccccccccc---
Confidence 76544 44688888888887542 238889999999999999999999999876 7 99999999988887
Q ss_pred cCCCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC------CccccCC-------------CCCcccCCCC
Q 011842 288 KAPKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS------NVEYLAS-------------RDATIMGSRN 347 (476)
Q Consensus 288 ~~~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~------~~~yl~~-------------~~~~~~~sr~ 347 (476)
+++.+. +|++++++|||+++|.|+|+++++++.++.+.. ...|... ......++.+
T Consensus 183 ----id~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~ 258 (382)
T d2bkwa1 183 ----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPP 258 (382)
T ss_dssp ----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred ----ccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCc
Confidence 777664 999999999999999999999999987544321 1122211 1112234555
Q ss_pred ChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcC-CeEee--cCC---eeEEEEecCCcHHHhh-----ceee
Q 011842 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAG-ISAML--NEL---SSTVVFERPQDEEFVR-----RWQL 416 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g-~~~~~--~~~---~~iv~f~~~~~~~~~~-----~~~l 416 (476)
.....++..+++.+..+|..++.++..++++++++.+.+.. ...+. ++. ..+++|..+++.++.+ ++.+
T Consensus 259 ~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i 338 (382)
T d2bkwa1 259 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVI 338 (382)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEE
Confidence 44556677788888788999999999999999999998753 32221 111 2456788876554432 2223
Q ss_pred c------ccCCEEEEE-EcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 417 A------CQGNIAHVV-VMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 417 ~------~~~~~lRv~-~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
. ..++.+||+ +...+|.+|||+++++|+.+...+.
T Consensus 339 ~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 339 AGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp BCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred ECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 2 224679998 4466788999999999987766553
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.90 E-value=1.5e-21 Score=194.84 Aligned_cols=296 Identities=15% Similarity=0.126 Sum_probs=209.7
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEEE
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVKV 211 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~v 211 (476)
+....++.+++++.+++++|.+. .+.++|++|||+++..++..... +++.+++....|++.. ..+...+.....+
T Consensus 46 ~~ef~~i~~~~r~~l~~ll~~~~-~~~i~~~g~gT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (377)
T d1vjoa_ 46 DPAFLALMDEIQSLLRYVWQTEN-PLTIAVSGTGTAAMEATIANAVE--PGDVVLIGVAGYFGNRLVDMAGRYGADVRTI 122 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHHHHHHHHHhccc--cccccceeeechhhhhhhhhhhhhccccccc
Confidence 34567899999999999999975 35678888899999988877765 7888888888887653 4455556666666
Q ss_pred eCCCCCccCHHHHHHHHH-cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 212 DCLISGEIDCADFKAKLL-QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~-~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
....+...+.+..+.... .++. +|.+++.+|.+|.+.|+++|.++|+++|. .+++|++++.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~tg~~~~i~~i~~~~~~~g~-----~~~vDa~~~~g~~~------ 188 (377)
T d1vjoa_ 123 SKPWGEVFSLEELRTALETHRPA---ILALVHAETSTGARQPLEGVGELCREFGT-----LLLVDTVTSLGGVP------ 188 (377)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHHTC-----EEEEECTTTTTTSC------
T ss_pred ccCCCCcccchhhhhhhhcCcce---eeeeeeeeccceeeechhhhhhhhhhccc-----eEEEecchhhhhhh------
Confidence 665555556665555544 4444 78888899999999999999999999999 99999999877666
Q ss_pred CCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-Cc--cccCC---------CCCcccCCCCChhH-HHHHH
Q 011842 291 KVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NV--EYLAS---------RDATIMGSRNGHAP-IFLWY 356 (476)
Q Consensus 291 ~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~--~yl~~---------~~~~~~~sr~~~~~-l~~~~ 356 (476)
+++.+. +|++++++|||+++|.++|+++.++..++.... .. .+... .......+.+.... ..+-.
T Consensus 189 -~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (377)
T d1vjoa_ 189 -IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALRE 267 (377)
T ss_dssp -CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHH
T ss_pred -hcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHH
Confidence 455554 999999999999999999999999876543311 11 11000 00111122222222 22333
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---eeEEEEecCC---cHHHh----h--ceeec-----cc
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---SSTVVFERPQ---DEEFV----R--RWQLA-----CQ 419 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~iv~f~~~~---~~~~~----~--~~~l~-----~~ 419 (476)
++......|.+.+.++..++++++.+.+.+.++..+.++. ..+++|..|+ ..++. + ++.+. ..
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~~~~ 347 (377)
T d1vjoa_ 268 ALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELA 347 (377)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGT
T ss_pred HHhhhhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCccccc
Confidence 4444456788899999999999999999998876654432 3466777763 23332 2 22232 23
Q ss_pred CCEEEEEE-cCCCCHHHHHHHHHHHHHHH
Q 011842 420 GNIAHVVV-MPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 420 ~~~lRv~~-~~~~T~edid~~~~~l~~~~ 447 (476)
++.+||+. ..++|.||||+|+++|+++.
T Consensus 348 ~~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 348 GKVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 57899985 56789999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.90 E-value=3.8e-22 Score=201.68 Aligned_cols=301 Identities=11% Similarity=0.031 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
|..++++++.+|+.+.+|.+.+..++++|+|+++++..++.+..+ +++.|++.+++|..+...+..+|++++.|+.++
T Consensus 72 G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~--~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~ 149 (403)
T d1wsta1 72 GFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLN--PGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDD 149 (403)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhh--cCCccccCCCcchhhhHHHhhccccceeEeecc
Confidence 456999999999999999876666799999999999999888766 899999999999999999999999999999875
Q ss_pred CCc--cCH-HHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 216 SGE--IDC-ADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 ~g~--~D~-~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++. ... +..++.....++...+++.+++.|+||.+- .+++|+++|++|++ +|++|++|+.+.+......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~-----~li~De~y~~l~~~~~~~~ 224 (403)
T d1wsta1 150 KGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDF-----LIVEDGPYSELRYSGEPTP 224 (403)
T ss_dssp TEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCSSCCCC
T ss_pred cCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCc-----eeccccchhheecCCCCCC
Confidence 432 122 222233334455556777788999999885 46789999999999 9999999987665433332
Q ss_pred CCCCCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC--hhcH
Q 011842 290 PKVSFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG--YKGF 366 (476)
Q Consensus 290 ~~~~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g--~~g~ 366 (476)
+...... ....++.|++|++++++++|+++.++++++.+.....+.. ...+ .....+.+++...+ ...+
T Consensus 225 ~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~ 296 (403)
T d1wsta1 225 PIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQSID-------LCTN-TFGQAIAWKYVENGYLDEHI 296 (403)
T ss_dssp CGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHHHHHHH-------SSCC-HHHHHHHHHHHHTTHHHHHH
T ss_pred cccccCCCCcEEEEccccceecCcccccccccchHHHHHHHHHHhhhc-------cccc-cchhhhHHhhhhccccchhH
Confidence 2121212 2446778899999989999999999887654432211110 0111 11111111111111 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCeEeecCCeeEEEEecCCc---HHH-----hhceee-cc--------cCCEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDA---GISAMLNELSSTVVFERPQD---EEF-----VRRWQL-AC--------QGNIAHVV 426 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~---g~~~~~~~~~~iv~f~~~~~---~~~-----~~~~~l-~~--------~~~~lRv~ 426 (476)
++..+....+++.+.+.|.+. ++....+..+..+.+..+.. ..+ .++..+ +. ..+++|++
T Consensus 297 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~ 376 (403)
T d1wsta1 297 PKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLN 376 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEE
Confidence 566677777888888888774 33333344456666666531 111 123333 11 23689998
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 427 VMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
+.. .++++|+..++.|+++.++.+|
T Consensus 377 ~~~-~~~~~l~~al~rl~~~l~~~~k 401 (403)
T d1wsta1 377 FTY-VPEETIREGVRRLAETIKEEMK 401 (403)
T ss_dssp CSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 743 5899999999999999887665
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=1.1e-22 Score=203.06 Aligned_cols=286 Identities=13% Similarity=0.027 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
+..++++++ ++.++++++ ++++|+|+++++..++.+... +++.|+++.+.|..+...++.+|.+++.++++
T Consensus 62 G~~elr~ai----A~~~~~~~~--~Iiit~G~~~al~~~~~~l~~--~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~ 133 (368)
T d1v2da_ 62 GLPALREAL----AEEFAVEPE--SVVVTSGATEALYVLLQSLVG--PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDL 133 (368)
T ss_dssp CCHHHHHHH----HHHHTSCGG--GEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEE
T ss_pred CCHHHHHHH----HhhcccCCc--ceeeccchHHHHHHHhhcccc--ccccccccCCcchhhhhHHHhcCCccceecccc
Confidence 455676664 555788754 599999999999999888766 89999999999999999999999999888874
Q ss_pred --CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 215 --ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 215 --~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
..+.+|++.|++++.+.++ ++++++++|+||.+-+ +++|+++|++||+ ++++|++|+..........
T Consensus 134 ~~~~~~~d~~~l~~~~~~~~~---~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i-----~ii~D~~~~~~~~~~~~~~ 205 (368)
T d1v2da_ 134 TPEGFRLDLSALEKALTPRTR---ALLLNTPMNPTGLVFGERELEAIARLARAHDL-----FLISDEVYDELYYGERPRR 205 (368)
T ss_dssp ETTEEECCHHHHHTTCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBSSSCCCC
T ss_pred ccccccCCHHHHHHhhccCce---EEEEcCCCCcccccCCHHHHHHHHHHHHHcCC-----eeeechhhhhhcccccccc
Confidence 3467999999998876554 7778899999999965 8889999999999 9999999976544322221
Q ss_pred CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHH
Q 011842 290 PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQK 368 (476)
Q Consensus 290 ~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~ 368 (476)
......+...++...+.|+...++++|+++.++++++.+......... ..+. ........++.... .+.+++
T Consensus 206 ~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~q~~~~~~l~~~~~~~~~~~ 278 (368)
T d1v2da_ 206 LREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSF-----SAPT--PLQAGVAEALKLARREGFYEA 278 (368)
T ss_dssp HHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHHHHTS-----SCCH--HHHHHHHHHHHHHHHTTHHHH
T ss_pred cccccccccceeecccccccccccccccccccccccchhhhhhhcccc-----cccc--ccccccccccccccchhhHHH
Confidence 111112233444555567888889999999998876544322211110 1111 11112222232221 234566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc--HHHhh--ceeec---------ccCCEEEEEEcCCCCHHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD--EEFVR--RWQLA---------CQGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~--~~~~~--~~~l~---------~~~~~lRv~~~~~~T~ed 435 (476)
..+...++++++.+.|++.|+....++.++.+++..+.. .++.+ +..+. ...+.+|+++. +++|+
T Consensus 279 ~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~--~~~e~ 356 (368)
T d1v2da_ 279 LREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFC--KTEEE 356 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC--SCHHH
T ss_pred HHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCccHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEec--CCHHH
Confidence 777788899999999999998766556567777777642 23332 22221 12478999875 58999
Q ss_pred HHHHHHHHHHH
Q 011842 436 LDDFLNELIEN 446 (476)
Q Consensus 436 id~~~~~l~~~ 446 (476)
|++.++.|+++
T Consensus 357 i~~ai~rL~~~ 367 (368)
T d1v2da_ 357 LHLALERLGRV 367 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.90 E-value=1.1e-21 Score=202.12 Aligned_cols=302 Identities=15% Similarity=0.083 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHH-HHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-CCeEEE--EeCCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNL-HGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVK--VDCLI 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~-~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G~~v~~--v~~~~ 215 (476)
.-.++.+.+|+++|.+. .+|+++||++++ .++.+... ||++||+++.+|.|+...+..+ +..++. ++.++
T Consensus 67 ~i~eae~~~A~~~ga~~----a~f~~~Gtt~~n~a~i~a~~~--~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 67 PAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVS--NGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp HHHHHHHHHHHHTTCSE----EEEESSHHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred HHHHHHHHHHHHhCCCe----EEEECCchHHHHHHHHHHhcC--CCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 34556778999999864 677777766555 44555554 9999999999999999877766 444333 34454
Q ss_pred CC--------ccCHHHHHHHHHc------CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 216 SG--------EIDCADFKAKLLQ------NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 216 ~g--------~~D~~~Le~~l~~------~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.| .++.+.+++.+.+ .+.++..+++.+.+|+.|.+.|+++|+++|++||+ ++|+|+||+++
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~-----~l~vD~A~~~~ 215 (462)
T d1c4ka2 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCD-----YIEFDSAWVGY 215 (462)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBS-----EEEEECTTCCG
T ss_pred ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCC-----EEEEechhhcc
Confidence 43 3455555444322 12334456666788899999999999999999999 99999999866
Q ss_pred ccccccc--CCCCC-----CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCcc--ccCCC-CCcccCCCCChhH
Q 011842 282 MMPFVKK--APKVS-----FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVE--YLASR-DATIMGSRNGHAP 351 (476)
Q Consensus 282 ~~~~~~~--~~~~~-----~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~--yl~~~-~~~~~~sr~~~~~ 351 (476)
....... ..... ....+|++++|+||+++++.+++++..++..+........ .+... ......+.+....
T Consensus 216 ~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~ 295 (462)
T d1c4ka2 216 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMY 295 (462)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHH
T ss_pred ccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHH
Confidence 5432211 11111 1123799999999999988888888888765432111000 00000 0001122221222
Q ss_pred HHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEee-cCC----------------------------------
Q 011842 352 IFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAML-NEL---------------------------------- 396 (476)
Q Consensus 352 l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~---------------------------------- 396 (476)
..+-++...+.....++.+++..++++++++++++.+..... .+.
T Consensus 296 asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (462)
T d1c4ka2 296 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 375 (462)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcchhcccc
Confidence 233344445545566788899999999999999886532211 000
Q ss_pred ---eeE-------EEEecCC--------------c---HHHhhceeec---ccCCEEEEEEcCCCCHHHHHHHHHHHHHH
Q 011842 397 ---SST-------VVFERPQ--------------D---EEFVRRWQLA---CQGNIAHVVVMPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 397 ---~~i-------v~f~~~~--------------~---~~~~~~~~l~---~~~~~lRv~~~~~~T~edid~~~~~l~~~ 446 (476)
... +.+..+. . .++.+...+. ...+.+|+++++.+|++|||+++++|+++
T Consensus 376 ~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei 455 (462)
T d1c4ka2 376 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQL 455 (462)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 000 1111110 0 0111222221 23468999999999999999999999999
Q ss_pred HHHHHh
Q 011842 447 RSTWYE 452 (476)
Q Consensus 447 ~~~~~~ 452 (476)
.+.+-+
T Consensus 456 ~r~~~~ 461 (462)
T d1c4ka2 456 QRLIEE 461 (462)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 876544
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.89 E-value=3e-21 Score=193.66 Aligned_cols=302 Identities=12% Similarity=0.094 Sum_probs=216.8
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH--HHHHHcCCeEEE
Q 011842 133 YGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF--KAARMYRMECVK 210 (476)
Q Consensus 133 ~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~--~~~~~~G~~v~~ 210 (476)
.+....++.+++++.+++++|.+. ....++|.|||+++..++..+.. +++.+++....|++.. ..+..++...+.
T Consensus 44 r~~ef~~i~~~~r~~L~~ll~~~~-~~~i~~~gsgT~a~ea~~~~l~~--~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~ 120 (388)
T d2ch1a1 44 FHAELFRTMDEVKDGLRYIFQTEN-RATMCVSGSAHAGMEAMLSNLLE--EGDRVLIAVNGIWAERAVEMSERYGADVRT 120 (388)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCC-SCEEEESSCHHHHHHHHHHHHCC--TTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC-CeEEEEcCcHHHHHHHHHHHhcc--ccccccccccccccccchhhhhhhcccccc
Confidence 344677899999999999999974 33455677889998888877765 7888888888887754 455667888888
Q ss_pred EeCCCCCccCHHHHHHHHHc-CCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 211 VDCLISGEIDCADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 211 v~~~~~g~~D~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
++..+....+.+..++.+.. +++ ++.+++.+|.+|.+.|+++|+++|+++|. +++||++++.+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~t~tG~~~~~~~i~~~~~~~~~-----~~~vD~~ss~g~~p----- 187 (388)
T d2ch1a1 121 IEGPPDRPFSLETLARAIELHQPK---CLFLTHGDSSSGLLQPLEGVGQICHQHDC-----LLIVDAVASLCGVP----- 187 (388)
T ss_dssp EECCTTSCCCHHHHHHHHHHHCCS---EEEEESEETTTTEECCCTTHHHHHHHTTC-----EEEEECTTTBTTBC-----
T ss_pred cccccccccchhhhhhhhccCCcc---eeeeeecccccccccchhhhcchhccccc-----eeeeeeeecccccc-----
Confidence 88877777788877777654 343 88899999999999999999999999999 99999999887776
Q ss_pred CCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-----CccccC-----------CCCCcccCCCCChhHH
Q 011842 290 PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-----NVEYLA-----------SRDATIMGSRNGHAPI 352 (476)
Q Consensus 290 ~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-----~~~yl~-----------~~~~~~~~sr~~~~~l 352 (476)
+++.+. +|+++++.|||+++|.++|+++.+++.++.... ...|.. ........+.......
T Consensus 188 --id~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~ 265 (388)
T d2ch1a1 188 --FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIF 265 (388)
T ss_dssp --CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHH
T ss_pred --cchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHH
Confidence 566554 999999999999999999999999876543211 111110 0111122333323334
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC---e-eEEEEecCC---cHHHh----hc--eeecc-
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL---S-STVVFERPQ---DEEFV----RR--WQLAC- 418 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~---~-~iv~f~~~~---~~~~~----~~--~~l~~- 418 (476)
.+..+++.+...+.....++...+..+....+...+........ + .+++|..|+ ..++. ++ +.+..
T Consensus 266 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G 345 (388)
T d2ch1a1 266 ALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGG 345 (388)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCC
Confidence 45556666666777777778788887788888777665443221 2 467788764 23332 22 22322
Q ss_pred ----cCCEEEEE-EcCCCCHHHHHHHHHHHHHHHHHHHh
Q 011842 419 ----QGNIAHVV-VMPNVTIDKLDDFLNELIENRSTWYE 452 (476)
Q Consensus 419 ----~~~~lRv~-~~~~~T~edid~~~~~l~~~~~~~~~ 452 (476)
.++.+||+ +...+|.|||++|+++|+++++....
T Consensus 346 ~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~ 384 (388)
T d2ch1a1 346 LGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 384 (388)
T ss_dssp CGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred CccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 35689999 45677999999999999999887543
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=4.6e-22 Score=200.13 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++.+|+.+..|.+.+..++++|+|+++++..++.+..+ +++.|++..+.++.+...++..|+.++.++.+.+
T Consensus 66 ~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~--~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~ 143 (389)
T d2gb3a1 66 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIAN--PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRME 143 (389)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccccc--CCCeEEEeCCCCccccccccccCccccccccccc
Confidence 45999999999999999876666799999999999998888876 8999999999999999999999999999998754
Q ss_pred C-ccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 217 G-EIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 217 g-~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
+ ..+.+.+...+. .++.++++++++|+||.+- .+++|+++|++|++ +|+.|++|+.............
T Consensus 144 ~~~~~~~~~~~~~~---~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~-----~iI~De~y~~~~~~~~~~~~~~ 215 (389)
T d2gb3a1 144 EGFAIPQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGL-----FLIVDEVYSEIVFRGEFASALS 215 (389)
T ss_dssp GTSCCCTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEECTTTTCBCSSCCCCGGG
T ss_pred cccchhhhhhhhcc---cCccEEEeCCCCccccccchHHHHHHHHhhcccCCE-----EEEEeccccccccccccccccc
Confidence 3 334344443333 3345778889999999885 48899999999999 9999999987665433222112
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhh-hcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--ChhcHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINV-LSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKGFQKE 369 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~-l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g~~~~ 369 (476)
...+...++...++|+...++++|+++++++.+.. ....... ..+. ..+.+.++...+ ....+++.
T Consensus 216 ~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~--------~~~~---~~~~~~~~~~~l~~~~~~~~~~ 284 (389)
T d2gb3a1 216 IESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQG--------RLAP---PLLEQIGSVGLLNLDDSFFDFV 284 (389)
T ss_dssp SCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHH--------SCCC---CHHHHHHHHHHHTCCHHHHHHH
T ss_pred cccccccccccccccccCcccceeeeeccchhHHHHHhhhhhc--------cccc---cccccccccccccccchhcccc
Confidence 22233455666677888888999999998764322 2111111 1111 123333333333 23456777
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC--cHHHhhce---------e--e-cc---------cCCEEEE
Q 011842 370 VQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ--DEEFVRRW---------Q--L-AC---------QGNIAHV 425 (476)
Q Consensus 370 ~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~--~~~~~~~~---------~--l-~~---------~~~~lRv 425 (476)
.++..++++++.+.|++.|+.....| .+..+.++.|. +.++.+++ . + +. ..+.+|+
T Consensus 285 ~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRi 364 (389)
T d2gb3a1 285 RETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRI 364 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEE
T ss_pred cccccccchhhhhhhhhhccccccCCCceEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEE
Confidence 78888899999999999987655444 45666666653 33332211 1 1 11 1368999
Q ss_pred EEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
++. .+++++++.++.|.+..+++
T Consensus 365 s~~--~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 365 ACV--LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEc--CCHHHHHHHHHHHHHHHHHh
Confidence 874 68899999999998887765
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.4e-21 Score=190.94 Aligned_cols=294 Identities=13% Similarity=0.012 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC--
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-- 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-- 215 (476)
.++++++++|+++.+|.+.+..++++|+|+++++..++.+..+ ||+.|+++++.|..+..+++..|.+++.++.+.
T Consensus 38 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 115 (361)
T d1d2fa_ 38 DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQA 115 (361)
T ss_dssp HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc--cccccccccccccchhHHHHhhcceEEeecccccc
Confidence 3788999999999999886667899999999999888887765 999999999999999999999999999888752
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
++.+|++.+++.+.+. ++.+++++++.|+||.+-+ +++|+++|+++|+ ++++|++|+.+.+......+.
T Consensus 116 ~~~~~d~~~~~~~~~~~--~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~-----~lI~De~y~~~~~~~~~~~~~ 188 (361)
T d1d2fa_ 116 DGWFCDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGV-----RVISDEIHMDMVWGEQPHIPW 188 (361)
T ss_dssp SSEECCHHHHHHHHTST--TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTC-----EEEEECTTTTCBCSSSCCCCG
T ss_pred cccccccccchhhcccC--CceeEEecccccccccccchhhhhhhhhhhhhhhe-----eeeeccccccccccccccccc
Confidence 3469999999998653 2347778889999998854 8899999999999 999999998776543332222
Q ss_pred CCCcccccEEEEcCCC-CCCCCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH--hChhcHH
Q 011842 292 VSFKKPIGSVSVSGHK-FVGCPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR--KGYKGFQ 367 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK-~l~~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~--~g~~g~~ 367 (476)
......-.++..++.| +...++++|++++.... ....... +.. ....+.+.... +.+++.. ......+
T Consensus 189 ~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~--~~a~~~~~~~~~~~~~ 260 (361)
T d1d2fa_ 189 SNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA--LKG----RDGLSSPSVLA--LTAHIAAYQQGAPWLD 260 (361)
T ss_dssp GGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH--HHT----TSCCCSCCHHH--HHHHHHHHHHCHHHHH
T ss_pred ccccccccccccccccccccccccceeeecchhHHHHHHhhh--ccc----ccccccchhhh--HHHHHHHhhccchhhh
Confidence 2221112345555566 44567899999877542 1111000 000 00111111212 2222222 2233455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-eEeecCC-eeEEEEecC----CcHHH----hh--ceeec-------ccCCEEEEEEc
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGI-SAMLNEL-SSTVVFERP----QDEEF----VR--RWQLA-------CQGNIAHVVVM 428 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~-~~~~~~~-~~iv~f~~~----~~~~~----~~--~~~l~-------~~~~~lRv~~~ 428 (476)
+......++++.+.+.+.+... ..+.+|. +..+++..+ ++.++ .+ +..+. ...+++|+++.
T Consensus 261 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~ 340 (361)
T d1d2fa_ 261 ALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG 340 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC
T ss_pred cccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc
Confidence 5666666777777777766421 2233344 444444432 22332 23 23331 12468999874
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~~~~~ 450 (476)
++++++++.++.|.++.+++
T Consensus 341 --~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 341 --CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp --SCHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHhc
Confidence 67899999999998888765
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.89 E-value=6.8e-22 Score=199.57 Aligned_cols=335 Identities=13% Similarity=0.050 Sum_probs=222.8
Q ss_pred cccccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchh
Q 011842 57 VHASCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVH 136 (476)
Q Consensus 57 ~~~~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~ 136 (476)
....+|..++|...+ . ..++.+.+.+.+.+..+.+ +||...+
T Consensus 30 ~~vi~l~~G~P~~~d-----f-~~p~~i~~a~~~a~~~~~~---~Y~~~~G----------------------------- 71 (395)
T d1xi9a_ 30 IKVIRLNIGDPVKFD-----F-QPPEHMKEAYCKAIKEGHN---YYGDSEG----------------------------- 71 (395)
T ss_dssp CCCEECCCCCGGGTT-----C-CCCHHHHHHHHHHHHTTCC---SCCCTTC-----------------------------
T ss_pred CCeEECCCCCCCCCC-----C-CCCHHHHHHHHHHHhcCCC---CCCCCCC-----------------------------
Confidence 334566666662211 0 1256777777777755433 4655554
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC--
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL-- 214 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~-- 214 (476)
..++++++.+++.+.+|++.+....++|+|+++++..++.+..+ +|+.|++.+++|..+...++..|++++.++..
T Consensus 72 ~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~--~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~ 149 (395)
T d1xi9a_ 72 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLD--PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEE 149 (395)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGG
T ss_pred CHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcC--CCCEEEEcCCccccchhhhhhcCCEEEEEecccc
Confidence 34999999999999999887667799999999999998888776 99999999999999999999999999999865
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
.++.+|++++++.+.+++ .++++++|+|+||.+-+ +++|+++|++|++ |++.|++|+...++. ...+.
T Consensus 150 ~~~~~d~~~~~~~~~~~~---~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~-~~~~~ 220 (395)
T d1xi9a_ 150 EDWQPDIDDIRKKITDRT---KAIAVINPNNPTGALYDKKTLEEILNIAGEYEI-----PVISDEIYDLMTYEG-EHISP 220 (395)
T ss_dssp GTSEECHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----CEEEECTTTTCBSSS-CCCCH
T ss_pred ccccchHHHHHHhhcccc---cEEEecCCCCCccchhhHHHHHHHHhhhhhcCe-----eEEeccccccccccc-cccch
Confidence 356799999999886554 37888899999999955 7889999999999 999999998765532 11111
Q ss_pred CCCcccc-cEEEEcCCCCCC-CCCCceeEEeehh--hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 292 VSFKKPI-GSVSVSGHKFVG-CPMPCGVQITRME--HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 292 ~~~~~~~-Dsi~~s~hK~l~-~p~~~G~l~~~~~--~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
....... -++..|+.|.++ +++++|++++.+. .+..+......+. ......+. +.+.++...+ +.+.
T Consensus 221 ~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~q~a~~~~l~~~~~~ 293 (395)
T d1xi9a_ 221 GSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLA----RIRLCPNT---PAQFAAIAGLTGPMDY 293 (395)
T ss_dssp HHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHH----HHTCCSCS---HHHHHHHHHHHSCCHH
T ss_pred hhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhh----cCCCCcCH---HHHHHHHHHhcCCHHH
Confidence 1111111 245567888654 6899999876542 1111111000000 00111111 2222222222 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCC-eeEEEEecC-----CcHHHh----h--ceee-c------ccCCEEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNEL-SSTVVFERP-----QDEEFV----R--RWQL-A------CQGNIAHVV 426 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~iv~f~~~-----~~~~~~----~--~~~l-~------~~~~~lRv~ 426 (476)
+++..+.+.++++++.+.|++.+...+..|. ++.+++..+ ++.++. + +..+ + ...+++|++
T Consensus 294 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris 373 (395)
T d1xi9a_ 294 LKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV 373 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEE
Confidence 7777888889999999999998866555554 444443432 222222 2 2222 2 124679998
Q ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Q 011842 427 VMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 427 ~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+. ++.|.++..++.|+++.++
T Consensus 374 ~~--~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 374 FL--PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp CC--SCHHHHHHHHHHHHHHHHH
T ss_pred ec--CCHHHHHHHHHHHHHHHhc
Confidence 74 5788888888888877654
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.89 E-value=1.4e-21 Score=198.71 Aligned_cols=290 Identities=10% Similarity=-0.007 Sum_probs=199.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC-cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENN-EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~-~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
|..++++++++|+.+.+|.+.+ ..++++|+|+++|+..++++..+ |++.|+++++.|+.+...++..|.+++.|+++
T Consensus 67 G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 144 (418)
T d2r5ea1 67 GHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD--EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 144 (418)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccc--cccceeccccccchhhHHHHHcCCeEEEEEec
Confidence 4569999999999999998754 35699999999999999998877 99999999999999999999999999999886
Q ss_pred CC----------CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 215 IS----------GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 215 ~~----------g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.+ ...+.+.+++..... +.++++++++|+||.+-+ +++|+++|++|++ +++.|++|+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~-----~iI~De~y~~~ 216 (418)
T d2r5ea1 145 PNKTGGTISSADWVLDNNELEALFNEK---TKMIIINTPHNPLGKVMDRAELEVVANLCKKWNV-----LCVSDEVYEHM 216 (418)
T ss_dssp ESCCSSCEEGGGEECCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTC
T ss_pred ccccccchhhhhhhhhHHHHhhhhhcc---ccceecCCcCccccccccHHHHHHHhhhhhcCCe-----eeecccchhhh
Confidence 43 246777777665443 347888899999999854 7789999999999 99999999876
Q ss_pred cccccccCCCCCCc---ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHH
Q 011842 282 MMPFVKKAPKVSFK---KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTL 358 (476)
Q Consensus 282 ~~~~~~~~~~~~~~---~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l 358 (476)
........+..... ..+-.+...++++.+.++++|++++.+++++.+.....+... ..+ ...+.++.
T Consensus 217 ~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~-----~~~-----~~~q~a~~ 286 (418)
T d2r5ea1 217 VFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVY-----TCA-----TPIQEAIA 286 (418)
T ss_dssp BCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTC-----SCC-----HHHHHHHH
T ss_pred ccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhhccccccc-----ccc-----cchhhhcc
Confidence 65432222211211 123333333444445889999999998877665432222111 111 12222222
Q ss_pred HHh---------ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---------------cHHHh---
Q 011842 359 NRK---------GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---------------DEEFV--- 411 (476)
Q Consensus 359 ~~~---------g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---------------~~~~~--- 411 (476)
..+ ..+-+.+..++...+++++.+.|++.|+....|+.+..+....+. +.++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 366 (418)
T d2r5ea1 287 VGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM 366 (418)
T ss_dssp HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHH
Confidence 111 123356677778889999999999998866555555555554321 11222
Q ss_pred -h--ceeecc------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 412 -R--RWQLAC------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 412 -~--~~~l~~------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+ +..+.. ..+++|+++. .++|+|+..++.|++..
T Consensus 367 l~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~--~~~e~l~~a~~rl~~~l 415 (418)
T d2r5ea1 367 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWK 415 (418)
T ss_dssp HHHHSEECBCGGGGSCGGGHHHHTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEeCchhhCCCCCccCCCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 2 222211 1367999884 57899999998887754
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.89 E-value=4.4e-21 Score=193.46 Aligned_cols=295 Identities=12% Similarity=0.049 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC---
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL--- 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~--- 214 (476)
.++++++++|+++..|++.++.++++|+|+++++..++++..+ |++.|++..+.++.+....+..|...+.++..
T Consensus 69 ~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~--pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~ 146 (394)
T d1c7na_ 69 EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTK--PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKD 146 (394)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEET
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccc--cccccccccCcccchhhHHhhhhhccccccccccc
Confidence 4899999999999999986667899999999999999998877 99999999999999999999999998888764
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
..+.+|.+.++..+... .+.+++++++.||||.+-+ +++|+++|++|++ ||++|++|+.+.++...+.+.
T Consensus 147 ~~~~~d~~~~~~~~~~~--~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~-----~ii~De~Y~~~~~~~~~~~~~ 219 (394)
T d1c7na_ 147 GYYTIDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDL-----MLWSDEIHFDLIMPGYEHTVF 219 (394)
T ss_dssp TEEECCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSC-----EEEEECTTTTCBCTTCCCCCG
T ss_pred ccccchhhhhhhhhccc--cceEEEecccccccceeccHHHhhhhhccccccce-----eEeccccccccccCCccccch
Confidence 23458888888877432 2348888999999999955 7789999999999 999999998877654443321
Q ss_pred CCCcc---cccEEEEcCCCCC-CCCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcH
Q 011842 292 VSFKK---PIGSVSVSGHKFV-GCPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 292 ~~~~~---~~Dsi~~s~hK~l-~~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
..... ..-++..++.|.+ .+++++|++++.++.+ +.+.....+.. ..+. ......+.........+..
T Consensus 220 ~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~------~~~~-~~~~~~a~~~~~~~~~~~~ 292 (394)
T d1c7na_ 220 QSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATS------GMPF-TTLGYKACEICYKECGKWL 292 (394)
T ss_dssp GGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTT------CCCC-CHHHHHHHHHHHHHCHHHH
T ss_pred hhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhcc------cccc-ccccchhhhhhhcchhhhh
Confidence 22111 1234445666754 5789999999987643 33322222211 1111 1111111111222234455
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CeEeecCCeeEEEEecC----CcHHH----hhceee---c------ccCCEEEEEE
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAG--ISAMLNELSSTVVFERP----QDEEF----VRRWQL---A------CQGNIAHVVV 427 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~iv~f~~~----~~~~~----~~~~~l---~------~~~~~lRv~~ 427 (476)
++..+...++.+.+.+.++..+ +....++++..+.+..+ ++.++ .++..+ + ...+++|+++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~ 372 (394)
T d1c7na_ 293 DGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL 372 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC
T ss_pred cccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE
Confidence 6666666777777777777643 32223344555555543 22333 233222 1 2246899987
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~~~~~ 450 (476)
. +++|+|+..++.|++..+++
T Consensus 373 ~--~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 373 A--APSSVIQESLERLNKALKDL 393 (394)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHH
T ss_pred e--CCHHHHHHHHHHHHHHHHhc
Confidence 4 57899999999998888765
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.9e-21 Score=194.64 Aligned_cols=289 Identities=12% Similarity=0.070 Sum_probs=204.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
|..++++++.+++.+..|.+.+..++++|+|+++|+..++.+..+ ||+.|++.++.|+.+...+...|.....++.+.
T Consensus 66 G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~ 143 (375)
T d1o4sa_ 66 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLD--PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFM 143 (375)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCG
T ss_pred CCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhC--CCCEEEEccCccccchhhhhccccccccccccc
Confidence 456999999999999999887777899999999999999888876 999999999999999999999999988888764
Q ss_pred --CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 216 --SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 216 --~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.+.+|.+.++....+++ .++++++|+|+||.+- .+++|+++|++|++ ||+.|++|+...........
T Consensus 144 ~~~~~~~~~~~~~~~~~~~---~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~-----~ii~De~y~~~~~~~~~~~~ 215 (375)
T d1o4sa_ 144 SKNFQPSLEEVEGLLVGKT---KAVLINSPNNPTGVVYRREFLEGLVRLAKKRNF-----YIISDEVYDSLVYTDEFTSI 215 (375)
T ss_dssp GGTTCCCHHHHHHTCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTTTSBCSSCCCCH
T ss_pred cccccchhHHHHHhhccCc---cEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCC-----ceehHhhhcccccccccccc
Confidence 45678887776554443 4888899999999984 57889999999999 99999998765443211110
Q ss_pred --CCCCcccccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 --KVSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 --~~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
..+..++ -++..++.|.++ +++++|+++..++.++.+.....+.. .. .....+....... .....
T Consensus 216 ~~~~~~~~~-~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~-~~~~~ 283 (375)
T d1o4sa_ 216 LDVSEGFDR-IVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTT--------SC--INTVAQYAALKAL-EVDNS 283 (375)
T ss_dssp HHHCSSSTT-EEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHHT--------CS--CCHHHHHHHHHHT-TCCCH
T ss_pred ccccCCCCC-EEEEeechhhccCCccccccccccccchhhhhhhhcccc--------cc--ccccchhhhhhhc-ccchh
Confidence 0111122 355677888765 78999999999886654422211110 00 1123333333333 33445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc-HHHhh------ceee-cc----cCCEEEEEEcCCCCHHH
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD-EEFVR------RWQL-AC----QGNIAHVVVMPNVTIDK 435 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~-~~~~~------~~~l-~~----~~~~lRv~~~~~~T~ed 435 (476)
...+...++++.+.+.|++.|+....+.....+.+..+.+ .++.. +..+ +. ..+++|+++. +++++
T Consensus 284 ~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~--~~~e~ 361 (375)
T d1o4sa_ 284 YMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIER 361 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc--CCHHH
Confidence 5667777888899999999987655455556666777643 23222 2222 21 2468999875 58899
Q ss_pred HHHHHHHHHHHHH
Q 011842 436 LDDFLNELIENRS 448 (476)
Q Consensus 436 id~~~~~l~~~~~ 448 (476)
|++.++.|+++.+
T Consensus 362 l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 362 LTEALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999888887653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=1.4e-20 Score=186.64 Aligned_cols=295 Identities=13% Similarity=0.061 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEe
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKVD 212 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~ 212 (476)
....++.+++++.++++++.+++ ..++++|||.++-.++..... +++.+++....+++ +.+.++.+|.++..+.
T Consensus 29 ~~f~~i~~~~~~~l~~ll~~~~~--~i~~~gsgT~a~e~~~~nl~~--~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~ 104 (348)
T d1iuga_ 29 EAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKNLFA--PGERVLVPVYGKFSERFYEIALEAGLVVERLD 104 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHHHCC--TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--EEEEeCchHHHHHHHHHhccc--ccccceeecchHHHHHHHHHHHhcCccccccc
Confidence 35678889999999999998643 478899999998888777655 78888888888876 5567778888888887
Q ss_pred CCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 213 CLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 213 ~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
.+.....+++.+ . ...+..|.+++..|.+|.+.|+++|.++|++|+. ..++++|++++.+..| +
T Consensus 105 ~~~g~~~~~~~~-----~-~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~---~~l~~vDavss~g~~~-------i 168 (348)
T d1iuga_ 105 YPYGDTPRPEDV-----A-KEGYAGLLLVHSETSTGALADLPALARAFKEKNP---EGLVGADMVTSLLVGE-------V 168 (348)
T ss_dssp CCTTCCCCTTTS-----C-CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCT---TCEEEEECTTTBTTBC-------C
T ss_pred ccCCCccccccc-----c-ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhc---cceeechhhhcccccc-------c
Confidence 754444444332 1 1233478888999999999999999999999862 1189999999877665 5
Q ss_pred CCcc-cccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC-------CCCcccCCCCChhHHHHHHHHHHhChh
Q 011842 293 SFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS-------RDATIMGSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 293 ~~~~-~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~-------~~~~~~~sr~~~~~l~~~~~l~~~g~~ 364 (476)
++.+ ++|++++++||++++|.|+|+++++++.++.+.....|+.- .+....+|.+....+++-.+++.+..+
T Consensus 169 ~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~ 248 (348)
T d1iuga_ 169 ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR 248 (348)
T ss_dssp CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG
T ss_pred ccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH
Confidence 6555 39999999999999999999999999987766544334321 112234455544455566677665444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCe-eEEEEecCC---cHHHhh-----ceeec-----ccCCEEEEEEcCC
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNELS-STVVFERPQ---DEEFVR-----RWQLA-----CQGNIAHVVVMPN 430 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~-~iv~f~~~~---~~~~~~-----~~~l~-----~~~~~lRv~~~~~ 430 (476)
+ .+..++.....+.+++.+++.|+.......+ .+++|+.|+ ..++.+ ++.+. ..+..+||..+.+
T Consensus 249 ~-~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~ 327 (348)
T d1iuga_ 249 L-EEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGA 327 (348)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSS
T ss_pred H-hHHHHHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCC
Confidence 3 4445544445556666666777765433333 356788774 233322 22232 2346899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~~~ 450 (476)
++.+||+.++++|+++.+++
T Consensus 328 ~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 328 YDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.87 E-value=4e-21 Score=194.80 Aligned_cols=334 Identities=13% Similarity=0.101 Sum_probs=215.0
Q ss_pred ccccccCCCccccccCCCCCcHHHHHHHHHHHHhcccccccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHH
Q 011842 60 SCFSVTEPEADDEFTGDKEAYMAGVLARYRKTLMERTKHHLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQ 139 (476)
Q Consensus 60 ~~~~~~~p~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~ 139 (476)
..|..++|+... ....++.+++.+++.+..... .|||...+ ..+
T Consensus 33 I~L~~G~p~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~G-----------------------------~~~ 76 (412)
T d1bw0a_ 33 IKLSVGDPTLDK-----NLLTSAAQIKKLKEAIDSQEC--NGYFPTVG-----------------------------SPE 76 (412)
T ss_dssp EECCCCCTTTTS-----CSCCCHHHHHHHHHHHHTTCS--SSCCCTTC-----------------------------CHH
T ss_pred EECcCCCCCCCC-----CccccHHHHHHHHHHhhCCCC--CCCCCCcC-----------------------------CHH
Confidence 456666666533 122245666666665544322 25665554 348
Q ss_pred HHHHHHHHHHHHcCCC------CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 140 FEVGVLDWFARLWELE------NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 140 le~~~~~~la~l~g~~------~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
+++++.+|+.+.++.. .+..++++|+|+++|+..++.+..+ ||+.|++++++|..+...++.+|++++.+|+
T Consensus 77 LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 154 (412)
T d1bw0a_ 77 AREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD--AGDYALVPQPGFPHYETVCKAYGIGMHFYNC 154 (412)
T ss_dssp HHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhc--cccceeeeeccchhhhhhhhccCcccccccc
Confidence 9999999999876432 2334699999999999999988876 9999999999999999999999999999998
Q ss_pred CC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 LI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
++ ++..|++.|++.+.+.+ .+++++++.|+||.+. .+++|+++|++|++ ||++|++|+.+.+....+
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~---~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~-----~vi~De~Y~~~~~~~~~~ 226 (412)
T d1bw0a_ 155 RPENDWEADLDEIRRLKDDKT---KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRL-----PLFSDEIYAGMVFKGKDP 226 (412)
T ss_dssp EGGGTTEECHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----CEEEECTTTTCBCCSSCT
T ss_pred ccccccchhhHHHHhhhhccc---cccccccccccccccchhhhccccccccccCCe-----eeechhhHHHhccCCCCC
Confidence 64 45789999988776554 3788889999999984 57889999999999 999999998776643332
Q ss_pred CCCCC----CcccccE-EEEcCCC-CCCCCCCceeEEeehhhhh------hhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 289 APKVS----FKKPIGS-VSVSGHK-FVGCPMPCGVQITRMEHIN------VLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 289 ~~~~~----~~~~~Ds-i~~s~hK-~l~~p~~~G~l~~~~~~~~------~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
.+... ....... +..++.| +.+.++++|++++.+.... .......+ ..+........+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 298 (412)
T d1bw0a_ 227 NATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML--------VCGPCTVVQAALGE 298 (412)
T ss_dssp TCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH--------HTCSCHHHHHHHHH
T ss_pred ccccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc--------ccCCchhhhhhccc
Confidence 21111 1111222 2334445 6668999999998764321 11000001 11111011111111
Q ss_pred HHHHhChhcHHHHHHHHHHHHHHHHHHHHhc-CCeEeecCCeeEEEEecC--------CcHHHhh------ceee-cc--
Q 011842 357 TLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA-GISAMLNELSSTVVFERP--------QDEEFVR------RWQL-AC-- 418 (476)
Q Consensus 357 ~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~iv~f~~~--------~~~~~~~------~~~l-~~-- 418 (476)
.+.....+.+.+..++..++++++.+.|.+. |+....+.....++.+.+ .+.++.+ +..+ +.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~ 378 (412)
T d1bw0a_ 299 ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTI 378 (412)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGG
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccc
Confidence 1212233456777888888999999999875 443333444455544433 1223322 2222 21
Q ss_pred --cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 419 --QGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 419 --~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..+.+|+++. .+++++++.++.|++..++
T Consensus 379 Fg~~g~iRis~~--~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 379 FHAPGFTRLTTT--RPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp GTCTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 2468999874 5788888888888776554
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.9e-21 Score=190.36 Aligned_cols=288 Identities=12% Similarity=0.036 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCc-ccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNE-YWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~-~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
|..++++++.+++.+.+|.+.+. ..+++|+|+++++..++++..+ +++.|+++++.++.+.......|..+..++.+
T Consensus 64 G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 141 (382)
T d1u08a_ 64 GVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVR--NGDEVICFDPSYDSYAPAIALSGGIVKRMALQ 141 (382)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhccc--ccceEEEecccccchhhhhhhccccceecccc
Confidence 56799999999999999987543 3599999999999999998887 99999999999999999999999988888876
Q ss_pred C-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 I-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
. .+.+|++++++.+.+++ .++++++++|+||.+-+ +++|+++|+++++ +++.|+.|.-..........
T Consensus 142 ~~~~~~d~~~l~~~~~~~~---~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~-----~ii~d~~~~~~~~~~~~~~~ 213 (382)
T d1u08a_ 142 PPHFRVDWQEFAALLSERT---RLVILNTPHNPSATVWQQADFAALWQAIAGHEI-----FVISDEVYEHINFSQQGHAS 213 (382)
T ss_dssp TTTCCCCHHHHHHHCCTTE---EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCC-----EEEEECTTTTCBCCSSCCCC
T ss_pred cccccCCHHHHhhhhccCc---cEEEECCCCcccccccccccchhhhhhhccccc-----eeeeecchhhcccccccccc
Confidence 4 46789999988776554 37888899999999965 5777788888999 99999998765544323222
Q ss_pred CCCC---cccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--Chhc
Q 011842 291 KVSF---KKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK--GYKG 365 (476)
Q Consensus 291 ~~~~---~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--g~~g 365 (476)
.... .+++-++...++|+..+++++||+++++++++.+.....+.. .+.+ .+.++++...+ +.+.
T Consensus 214 ~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~~~~~-------~~~~---~~~q~a~~~~l~~~~~~ 283 (382)
T d1u08a_ 214 VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLT-------FSVN---TPAQLALADMLRAEPEH 283 (382)
T ss_dssp GGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHHT-------SSCC---HHHHHHHHHHHHHCTHH
T ss_pred ccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhhcccc-------cccc---cccccccccccccchHH
Confidence 1211 123445555566677788999999998887665533222221 1111 22333332222 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC-----cHHHhh----c--eee-c--------ccCCEEEE
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ-----DEEFVR----R--WQL-A--------CQGNIAHV 425 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~-----~~~~~~----~--~~l-~--------~~~~~lRv 425 (476)
++...++..++++.+.+.++..|+....+.+...+.++.+. +.++.+ + ..+ + ...+++|+
T Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ri 363 (382)
T d1u08a_ 284 YLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRL 363 (382)
T ss_dssp HHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEE
T ss_pred HHHHHHHHHhhhhhhhhhhccCCcEEecCCceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEE
Confidence 67777888888888999888888765544445555555542 233322 2 222 1 12357999
Q ss_pred EEcCCCCHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~ 445 (476)
++. .++|+++..++.|++
T Consensus 364 s~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 364 CFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp ECC--SCHHHHHHHHHHHTT
T ss_pred EEe--CCHHHHHHHHHHHhC
Confidence 874 578888887777654
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=1.9e-20 Score=182.10 Aligned_cols=289 Identities=12% Similarity=0.065 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH---HHHcCCeEEEEeCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA---ARMYRMECVKVDCL 214 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~---~~~~G~~v~~v~~~ 214 (476)
.++.+++++++++++|.+. ..+||+|||+||+.++.+++. +++.+++....|.++... ....+..+..++..
T Consensus 37 ~~~~~~l~~~la~~~g~~~---~v~f~~sGt~An~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (345)
T d1v72a1 37 DELTAQVKRKFCEIFERDV---EVFLVPTGTAANALCLSAMTP--PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG 111 (345)
T ss_dssp SHHHHHHHHHHHHHHTSCC---EEEEESCHHHHHHHHHHTSCC--TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCc---EEEECCchHHHHHHHHHHHHh--cCCccccccccceeeechhhHHHhcCccccccccc
Confidence 3777889999999999864 388999999999999988776 778888999999987643 34446677777777
Q ss_pred CCCccCHHHHHHHHHcCCC---CcE--EEEEeeC--CCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 215 ISGEIDCADFKAKLLQNKD---KPA--IINVNIG--TTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~---~p~--~vv~t~g--tt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
.++.+|++.+++.+.+... .+. ++..+.. ....+.++++.++.++|++||+ ++|+|++++++......
T Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~D~~~~~~~~~~~~ 186 (345)
T d1v72a1 112 PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSL-----GLHMDGSRFANALVSLG 186 (345)
T ss_dssp GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTC-----EEEEEETTHHHHHHHHT
T ss_pred ccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCc-----eeeecccccceeccccc
Confidence 7889999999999976532 232 3333222 2233445788999999999999 99999999765443222
Q ss_pred cCCCCCCc-ccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhc
Q 011842 288 KAPKVSFK-KPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKG 365 (476)
Q Consensus 288 ~~~~~~~~-~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g 365 (476)
........ ...+.++...+|.++. ..+....... ........... ..++.. ......++.+.......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~aa~~~~~~~~~~~ 256 (345)
T d1v72a1 187 CSPAEMTWKAGVDALSFGATKNGVL--AAEAIVLFNTSLATEMSYRRKR-------AGHLSS-KMRFLSAQIDAYLTDDL 256 (345)
T ss_dssp CCTTTTTGGGTCCEEEECCGGGTCS--SCEEEEESSGGGHHHHHHHHHH-------TTCCCS-STHHHHHHHHHHTSTTH
T ss_pred cCHHHhhccccccccccCccccccc--cccccccchhhhhhhccccccc-------cccccc-hhhHHhhhhHHHHHHhh
Confidence 21112222 2256666666665553 3344443332 21111000000 011111 22344455666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEee-cCCeeEEEEecCCcH---HHhhceeecc---cCCEEEEEEcCCCCHHHHHH
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAGISAML-NELSSTVVFERPQDE---EFVRRWQLAC---QGNIAHVVVMPNVTIDKLDD 438 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~iv~f~~~~~~---~~~~~~~l~~---~~~~lRv~~~~~~T~edid~ 438 (476)
..+...+...+++++.+.+.+.+...+. +..++++++..+... -..+++.+.. ..+.+|+++++++|+||||+
T Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~ 336 (345)
T d1v72a1 257 WLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDH 336 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECHHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHH
T ss_pred hhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCHHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHH
Confidence 7888888889999999999998766554 456899988876421 1234455432 35799999999999999999
Q ss_pred HHHHHHHH
Q 011842 439 FLNELIEN 446 (476)
Q Consensus 439 ~~~~l~~~ 446 (476)
++++|+++
T Consensus 337 ~le~lr~a 344 (345)
T d1v72a1 337 LLNQVRLA 344 (345)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.7e-20 Score=189.10 Aligned_cols=293 Identities=12% Similarity=0.021 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCC-cccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENN-EYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~-~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
|..++++++.+++.+.+|.+.+ ..++++|+|+++|+..++++... |++.|+++.+.+..+...+...|++++.++.+
T Consensus 65 G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~--~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~ 142 (418)
T d1w7la_ 65 GYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVD--EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLK 142 (418)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHHHHTTCEEEEEECE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhcc--CCceeeccccccchhHHHHHHcCCEeeccccc
Confidence 4569999999999999998854 24699999999999999988876 99999999999999999999999998888764
Q ss_pred C------------CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcc
Q 011842 215 I------------SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALF 279 (476)
Q Consensus 215 ~------------~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~ 279 (476)
+ ++.+|.+++.....+. ..++++++++|+||.+- .+++|+++|++|++ ++++|++|.
T Consensus 143 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v-----~vI~De~Y~ 214 (418)
T d1w7la_ 143 PGPIQNGELGSSSNWQLDPMELAGKFTSR---TKALVLNTPNNPLGKVFSREELELVASLCQQHDV-----VCITDEVYQ 214 (418)
T ss_dssp ECC---CCSEEGGGEECCHHHHHHHCCTT---EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTT
T ss_pred cccccccccccccCcccchhhhhcccccc---ccceeccCcCCcccccccHHHHHHHHHHHHhcCC-----CchhhhhhH
Confidence 2 2356766666554433 34788889999999884 58899999999999 999999998
Q ss_pred cccccccccCCCCCCccc--ccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHH
Q 011842 280 GLMMPFVKKAPKVSFKKP--IGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 280 g~~~~~~~~~~~~~~~~~--~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~ 356 (476)
.+.+......+.....+. -.++..|+.| +...++++|+++++++++..+.....+.. ...+. ........
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~-----~~~~~--~~q~~~~~ 287 (418)
T d1w7la_ 215 WMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSV-----FHCPT--QSQAAVAE 287 (418)
T ss_dssp TCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTT-----SCCCH--HHHHHHHH
T ss_pred HhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhhhhcccccccc-----ccccc--hhhHHHHH
Confidence 776543333322222221 1234455556 56678999999999887655533222211 01111 11111111
Q ss_pred HHHH---h---ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC----------------cHHHhh--
Q 011842 357 TLNR---K---GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ----------------DEEFVR-- 412 (476)
Q Consensus 357 ~l~~---~---g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~----------------~~~~~~-- 412 (476)
++.. . ..+-+....++..++++++.+.|++.|+....|.+...+.+..+. +.++.+
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 367 (418)
T d1w7la_ 288 SFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWM 367 (418)
T ss_dssp HHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHH
T ss_pred HhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHH
Confidence 2211 1 123456667778889999999999999866555555555554321 112221
Q ss_pred ----ceee-cc-----------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 413 ----RWQL-AC-----------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 413 ----~~~l-~~-----------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
+..+ +. ..+++|+++. .++++++..++.|++..
T Consensus 368 l~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~--~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 368 IKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp HHHHCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEcchhhcCCCccCCCCCEEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 2222 11 1368999864 57888898888887653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.85 E-value=4.1e-20 Score=188.50 Aligned_cols=299 Identities=13% Similarity=0.088 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHHHHcCC--CCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH-cCCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWEL--ENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM-YRMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~--~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~-~G~~v~~v~ 212 (476)
|..++++++.+|+.+.+|. +.++.++++|+|+++++..++.+..+ ||+.|+++.+.|..+...++. .|++++.++
T Consensus 85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 162 (431)
T d1m7ya_ 85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--PGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 162 (431)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--TTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--CCCEEEEeCCCchhHHHHHHHhcCceecccc
Confidence 4679999999999999874 33345799999999999999988876 999999999999988888775 478999999
Q ss_pred CCC--CCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CLI--SGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~~--~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
+++ ++.+|++.+++.+.+ ...++.++++++|+|+||.+-+ +++|+++|++||+ ++++|++|+...+.
T Consensus 163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~-----~vI~De~Y~~~~~~ 237 (431)
T d1m7ya_ 163 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGI-----HLISDEIYSGTAFS 237 (431)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGGGCCS
T ss_pred ccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCc-----ceeecccccccccC
Confidence 874 357999999988864 3345568888999999999855 8889999999999 99999999876654
Q ss_pred ccccCCCC------C---Ccc--cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 285 FVKKAPKV------S---FKK--PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 285 ~~~~~~~~------~---~~~--~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
.....+.. . ... .--++..++.|.++ .++++|+++.+++.+........+. .... .....
T Consensus 238 ~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~-------~~~~-~~~~~ 309 (431)
T d1m7ya_ 238 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF-------GLVS-SQTQH 309 (431)
T ss_dssp SSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGG-------SCCC-HHHHH
T ss_pred CCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhcc-------cccc-ccccc
Confidence 32221100 0 001 11245567888776 6799999999887643322111111 0010 11111
Q ss_pred HHHHHHHHh--ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---------cHHH----hh--cee
Q 011842 353 FLWYTLNRK--GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---------DEEF----VR--RWQ 415 (476)
Q Consensus 353 ~~~~~l~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---------~~~~----~~--~~~ 415 (476)
.+.+.+... ..+-+.+..++..++++.+.+.|++.|+....+.....+++..+. +.++ .+ +..
T Consensus 310 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~ 389 (431)
T d1m7ya_ 310 LLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLN 389 (431)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEE
T ss_pred hhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEE
Confidence 121222111 123355566677788888999999988865544445555555431 1122 22 222
Q ss_pred e-c------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 416 L-A------CQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 416 l-~------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+ + ...+++|+++. ..++++++..++.|++..++.
T Consensus 390 v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 390 ISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp CEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence 2 1 12478999874 356788999999998877654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.85 E-value=4.3e-20 Score=188.19 Aligned_cols=295 Identities=10% Similarity=0.057 Sum_probs=196.8
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc-CCeEEEEe
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVKVD 212 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~-G~~v~~v~ 212 (476)
|..++++++++|+.+.+|.. .++.++++|+|+++++..++.+..+ ||+.|+++.++|.++...+... |++++.++
T Consensus 84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 161 (428)
T d1iaya_ 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--PGDAFLVPSPYYPAFNRDLRWRTGVQLIPIH 161 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--TTCEEEEESSCCTTHHHHTTTTTCCEEEEEC
T ss_pred chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--CCCEEEEccCCchHHHHHHHHhcCCeEEEee
Confidence 45799999999999998743 3345699999999999999888876 9999999999999998877754 88999999
Q ss_pred CCC--CCccCHHHHHHHHHc---CCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCccccccc
Q 011842 213 CLI--SGEIDCADFKAKLLQ---NKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMP 284 (476)
Q Consensus 213 ~~~--~g~~D~~~Le~~l~~---~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~ 284 (476)
++. ++.+|+++++.+++. .+.++.++++++++|+||.+-+ +++|+++|++||+ +|++|++|+.+.+.
T Consensus 162 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~-----~vI~De~Y~~~~~~ 236 (428)
T d1iaya_ 162 CESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNI-----HLVCDEIYAATVFD 236 (428)
T ss_dssp CCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTC-----EEEEECTTGGGCCS
T ss_pred cccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcE-----EEEecccccccccC
Confidence 874 467999998877643 3445567888899999998855 7899999999999 99999999876654
Q ss_pred ccccCCCCC--------Cccc-ccEEEEcCCCCC-CCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 285 FVKKAPKVS--------FKKP-IGSVSVSGHKFV-GCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 285 ~~~~~~~~~--------~~~~-~Dsi~~s~hK~l-~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
...+.+... .... -.++..++.|.+ .+++++|+++..++ +.+.+.....+.. .+ .....
T Consensus 237 ~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~---------~~-~~~~~ 306 (428)
T d1iaya_ 237 TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL---------VS-TQTQY 306 (428)
T ss_dssp SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSC---------CC-HHHHH
T ss_pred cccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccc---------cc-ccccc
Confidence 322221100 1111 235677888955 56799999998665 3333322111110 00 11111
Q ss_pred HHHH-HH--HhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCC---------cHHH----hh--cee
Q 011842 354 LWYT-LN--RKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQ---------DEEF----VR--RWQ 415 (476)
Q Consensus 354 ~~~~-l~--~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~---------~~~~----~~--~~~ 415 (476)
+.++ +. ....+-+++..++..++++.+.+.|+..|+....++....+.+..+. +.++ .+ +..
T Consensus 307 ~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~ 386 (428)
T d1iaya_ 307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLN 386 (428)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEE
T ss_pred chhhhhhhhccccccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEE
Confidence 1111 11 01112345566667778889999999888765544445555555431 1112 22 222
Q ss_pred e-c------ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 416 L-A------CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 416 l-~------~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
+ + ...+++|+++. ..++++|+..++.|++.+.
T Consensus 387 v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 387 VSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp CEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred EEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence 2 1 12478999873 4567789988888877654
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=2.9e-19 Score=171.73 Aligned_cols=290 Identities=14% Similarity=0.053 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHc--CCeEEEEeCCC
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY--RMECVKVDCLI 215 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~--G~~v~~v~~~~ 215 (476)
.++.+++++.+++++|.+++ .++||+|||+||+.++..+.. +++.++.....|.++....... +.....+...
T Consensus 34 ~~~~~~lr~~ia~~~g~~~~--~v~~tsggtean~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (340)
T d1svva_ 34 DSHCAKAARLIGELLERPDA--DVHFISGGTQTNLIACSLALR--PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP- 108 (340)
T ss_dssp SHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHHHHHHHCC--TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-
T ss_pred CHHHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHHHHHHHHhh--hccccccccccceeeeecccccccceeeeecccc-
Confidence 36677889999999999854 499999999999999988776 8889999999998886443333 3333333332
Q ss_pred CCccCHHHHHHHHHcCC---CCcEEEEEeeCCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccC
Q 011842 216 SGEIDCADFKAKLLQNK---DKPAIINVNIGTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKA 289 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~---~~p~~vv~t~gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~ 289 (476)
....+.+...+...... ..+..+++....+..|.+ +++..+.++|+++|. ++|+|+++++...+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~d~a~~~~~~~~~~~~ 183 (340)
T d1svva_ 109 DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGL-----YLFLDGARLASALSSPVND 183 (340)
T ss_dssp TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTC-----EEEEECTTHHHHHTSTTCC
T ss_pred cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccc-----eeeeeccceeeeecccccc
Confidence 33445555555444321 122334444444455554 567778899999999 9999999976655433332
Q ss_pred CCCCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHH
Q 011842 290 PKVSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQK 368 (476)
Q Consensus 290 ~~~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~ 368 (476)
........ .+++..+..|..+.+. .++................+ ..++.+.. .....+++..+.......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~aa~~~~~~~~~~~~ 254 (340)
T d1svva_ 184 LTLADIARLTDMFYIGATKAGGMFG-EALIILNDALKPNARHLIKQ-------RGALMAKG-WLLGIQFEVLMKDNLFFE 254 (340)
T ss_dssp CCHHHHHHHCSEEEEECTTTTCSSC-EEEEECSGGGCTTHHHHHHH-------TTCCCTTT-HHHHHHHHHHTSTTHHHH
T ss_pred cccccccccceeeecCCcccccccc-ccccccchhhhhhhhhhccc-------ccCccchh-hHHHHHHHHHhhhhHHHH
Confidence 11111122 5667777777665332 22222222221111100000 01111111 222223344455566778
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEecCCc--HHHhhceee------cccCCEEEEEEcCCCCHHHHHHHH
Q 011842 369 EVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFERPQD--EEFVRRWQL------ACQGNIAHVVVMPNVTIDKLDDFL 440 (476)
Q Consensus 369 ~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~--~~~~~~~~l------~~~~~~lRv~~~~~~T~edid~~~ 440 (476)
..++...+++++.+.|++.|+..+.+..++++++..++. ..+.+++.+ +...+.+|+++++.+|+||||+|+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l 334 (340)
T d1svva_ 255 LGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFV 334 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCHHHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHH
Confidence 888899999999999999998776677788888776542 233333332 233578999999999999999999
Q ss_pred HHHHHH
Q 011842 441 NELIEN 446 (476)
Q Consensus 441 ~~l~~~ 446 (476)
++|+++
T Consensus 335 ~~l~~l 340 (340)
T d1svva_ 335 EVLKRL 340 (340)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999863
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=7.1e-19 Score=174.42 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=187.4
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCc-EEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccCH
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDG-ILYASRESHYSVFKAARMYRMECVKVDCLISGEIDC 221 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~-~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D~ 221 (476)
++++++++.+|++++ ++++|+|+++++..++.+... ||+ +|+++.++|..+...++..|++++.++.++++.+|+
T Consensus 60 ~Lr~~ia~~~gv~pe--~I~it~Gs~eai~~~~~~~~~--pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d~ 135 (354)
T d1fg7a_ 60 AVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAFCE--PGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDL 135 (354)
T ss_dssp HHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHHCC--TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCCH
T ss_pred HHHHHHHHHhCCChH--HeeeccCchHHHHHHHHHhhc--cccccccccccccccchhhhhccCceeeccccccccccch
Confidence 455667788899864 599999999999999988876 887 688999999999999999999999999988899999
Q ss_pred HHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH--HhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 222 ADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE--ESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 222 ~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~--~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
++++..+. ++.+|+++++++++|.+-+-+++..++. +++. ++++|++|..+.... .......... -.
T Consensus 136 ~~l~~~~~----~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~-----~~iidd~~~~f~~~~-~~~~~~~~~~-~~ 204 (354)
T d1fg7a_ 136 QGISDKLD----GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKA-----IVVADEAYIEFCPQA-SLAGWLAEYP-HL 204 (354)
T ss_dssp HHHHTSCT----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTC-----EEEEECTTGGGSGGG-CSGGGTTTCT-TE
T ss_pred hhhhhccc----ccceeeccCCCccceeEeeecccccccccccccc-----cccccccchhhcccc-ccchhhcccc-cc
Confidence 99887652 3448888999999999976444433333 3455 788999886543221 1111111111 23
Q ss_pred EEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhCh---hcHHHHHHHHHH
Q 011842 300 SVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY---KGFQKEVQKCLR 375 (476)
Q Consensus 300 si~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~---~g~~~~~~~~~~ 375 (476)
++..|++|.++ +++++|+++.+++.++.+....... ..+ ...+..+...+.. ......+++..+
T Consensus 205 iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~~-------~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (354)
T d1fg7a_ 205 AILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY-------PLS-----TPVADIAAQALSPQGIVAMRERVAQIIA 272 (354)
T ss_dssp EEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS-------CSC-----HHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred eEEeCCccccCCCccccccccccchhhhhhhhhcCcc-------chh-----hHHHHHHHHHHhhhccccccccchhhhh
Confidence 45568889875 8899999999988776663221111 111 1222222222222 234555667778
Q ss_pred HHHHHHHHHHhcCCeE-eecCCeeEEEEecCCcHHHh-----hceee-cc-----cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISA-MLNELSSTVVFERPQDEEFV-----RRWQL-AC-----QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~-~~~~~~~iv~f~~~~~~~~~-----~~~~l-~~-----~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
.++++.+.|.+.+... +.+..++.+.++.+++.++. ++..+ ++ ..+++|+++. |++++++|+++|
T Consensus 273 ~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig---t~ee~~~~l~aL 349 (354)
T d1fg7a_ 273 EREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDAL 349 (354)
T ss_dssp HHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcceeCCCCceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC---CHHHHHHHHHHH
Confidence 8889999999988653 45566788888877654433 23333 21 2478999874 789999999998
Q ss_pred H
Q 011842 444 I 444 (476)
Q Consensus 444 ~ 444 (476)
+
T Consensus 350 k 350 (354)
T d1fg7a_ 350 R 350 (354)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=2.2e-19 Score=179.10 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcE-EEec-CCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGI-LYAS-RESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~-Vl~s-~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
.++.++.+..++.++.+. ...+++|+||++|++.++.+.. |++. |+++ .+.|.++..++++.|++++ +.+
T Consensus 50 ~~~~~l~~~~~~~~~~~~-~e~~~~~~~~~~a~~~~l~al~---~~~~vi~~~~~~~~~~~~~~~~l~g~~~v--~~~-- 121 (366)
T d2aeua1 50 YFAEKVNEYGLKHLGGDE-NDKCVGFNRTSSAILATILALK---PKKVIHYLPELPGHPSIERSCKIVNAKYF--ESD-- 121 (366)
T ss_dssp HHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHC---CSEEEEECSSSSCCTHHHHHHHHTTCEEE--EES--
T ss_pred hhHHHHHHHHHHHccCCC-ccEEEEeCCHHHHHHHHHHHhC---CCCEEEEecCCCcchhHHHHHHhcCCeEE--CCC--
Confidence 455566666666677653 2458899999999999887653 5554 4544 5799999999999999754 444
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCc-cccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTV-KGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~-tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|+++|+++|+++|+ +|++++++++ ++.+.++++|+++|++||+ |+++|++|+.+++....+.. ...
T Consensus 122 ---d~e~l~~~i~~~tk---~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~-----~~i~De~y~~~~~~~~~~~~--~~~ 188 (366)
T d2aeua1 122 ---KVGEILNKIDKDTL---VIITGSTMDLKVIELENFKKVINTAKNKEA-----IVFVDDASGARVRLLFNQPP--ALK 188 (366)
T ss_dssp ---CHHHHHTTCCTTEE---EEEECBCTTSCBCCHHHHHHHHHHHHHHTC-----CEEEECTTHHHHHHHTTCCC--HHH
T ss_pred ---CHHHHHHhcCCCce---EEEEEecCCCCcCCHHHHHHHHHHhccCcE-----EEEEecCccccccccccCCC--Hhh
Confidence 89999999988775 7888888665 5578899999999999999 99999999866553222211 111
Q ss_pred ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC
Q 011842 296 KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS 330 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~ 330 (476)
..+|+++.|.||+++ +|++|+++.++++++.+..
T Consensus 189 ~~~di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~ 222 (366)
T d2aeua1 189 LGADLVVTSTDKLME-GPRGGLLAGKKELVDKIYI 222 (366)
T ss_dssp HTCSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHH
T ss_pred cCceEEEeccccccc-ccceeEEEecHHHHHHHHH
Confidence 238999999999876 6899999999998776643
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.80 E-value=7.7e-18 Score=166.78 Aligned_cols=273 Identities=11% Similarity=0.004 Sum_probs=179.0
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCccCHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEIDCA 222 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~D~~ 222 (476)
+++++++.+|++++ ++++|+|++++++..+.+. .++.+++..+.+..+.......+++++.+|++. ++..+.+
T Consensus 62 Lr~aia~~~~v~~~--~I~~~~g~~~~~~~~~~~~----~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 135 (355)
T d1lc5a_ 62 LHQALARHHQVPAS--WILAGNGETESIFTVASGL----KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTD 135 (355)
T ss_dssp HHHHHHHHHTSCGG--GEEEESSHHHHHHHHHHHH----CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCT
T ss_pred HHHHHHHHhCCCHH--HEEecccHHHHHHHHHhhh----ccccccccCCccceeccccccccccceeeeeeccCCcccee
Confidence 34446666788754 4888888888877655443 333334445677777778888899999999863 3333334
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCccccc
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIG 299 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~D 299 (476)
.+++.+.++++ +|++++++|+||.+-+ +.+|+++|++|++ ++++|++|..+..............+ -.
T Consensus 136 ~~~~~~~~~~~---~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~-----~li~De~y~~~~~~~~~~~~~~~~~~-~~ 206 (355)
T d1lc5a_ 136 AILEALTPDLD---CLFLCTPNNPTGLLPERPLLQAIADRCKSLNI-----NLILDEAFIDFIPHETGFIPALKDNP-HI 206 (355)
T ss_dssp THHHHCCTTCC---EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEECTTGGGSTTCCCSGGGCTTCT-TE
T ss_pred eeeeccccccc---eeeeecccCcccccchhhhhhhhhhhcccccc-----ccccccceeeeeeecccccccccccc-cc
Confidence 55665555444 7888899999999865 7788899999999 99999999765432222111111111 34
Q ss_pred EEEEcCCCCCC-CCCCceeEEeehhhh-hhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhC-hhcHHHHHHHHHHH
Q 011842 300 SVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKG-YKGFQKEVQKCLRN 376 (476)
Q Consensus 300 si~~s~hK~l~-~p~~~G~l~~~~~~~-~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g-~~g~~~~~~~~~~~ 376 (476)
++..|+.|+++ .++++|+++++++.+ ..+..... + .+ ...+.+.++...+. ...+.+.+++.++.
T Consensus 207 i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~-------~--~~---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 274 (355)
T d1lc5a_ 207 WVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM-------P--WS---VNALAALAGEVALQDSAWQQATWHWLREE 274 (355)
T ss_dssp EEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC-------T--TC---SCHHHHHHHHHGGGCHHHHHHHHHHHHHH
T ss_pred eeecccccccccccccccceeccchhhhHHHHhhcC-------C--cc---ccccccccccccccccchhHHHHHHHHHH
Confidence 66677888765 789999999987643 32211100 0 11 11344555554443 33567778888889
Q ss_pred HHHHHHHHHhcCCeEeecCCeeEEEEecCCc-HHH-----hhceee-cc------cCCEEEEEEcCCCCHHHHHHHHHHH
Q 011842 377 AHYLKDRLLDAGISAMLNELSSTVVFERPQD-EEF-----VRRWQL-AC------QGNIAHVVVMPNVTIDKLDDFLNEL 443 (476)
Q Consensus 377 a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~-~~~-----~~~~~l-~~------~~~~lRv~~~~~~T~edid~~~~~l 443 (476)
.+++.+.|.+.+...+.+..++.+++..+.+ .++ .+++.+ +. ..+++|+++. |++|+++|+++|
T Consensus 275 ~~~~~~~l~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li~aL 351 (355)
T d1lc5a_ 275 GARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAAL 351 (355)
T ss_dssp HHHHHHHHHTSTTEEECCCSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEECCCCCEEEEEECCCCHHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHHHHH
Confidence 9999999999876666666677777776643 222 123333 11 2478999874 799999999999
Q ss_pred HHH
Q 011842 444 IEN 446 (476)
Q Consensus 444 ~~~ 446 (476)
+++
T Consensus 352 ~~i 354 (355)
T d1lc5a_ 352 RNV 354 (355)
T ss_dssp HHH
T ss_pred HHh
Confidence 886
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.79 E-value=2.6e-19 Score=180.72 Aligned_cols=299 Identities=8% Similarity=-0.057 Sum_probs=188.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCc--hh---HHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEE
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCG--TE---GNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVK 210 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~gg--t~---An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~ 210 (476)
|..++++++.+++.+..+...++...+.|.++ +. ++...+++..+ |||.|+++++.+..+...++..|++++.
T Consensus 72 G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~--pGd~Vlv~~P~y~~y~~~~~~~g~~~~~ 149 (401)
T d7aata_ 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFK--FSRDVYLPKPSWGNHTPIFRDAGLQLQA 149 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCT--TCCEEEEEESCCTTHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcC--CCceEEEecCCCcchhhHHHHcCCeEEE
Confidence 66799999999998776654222224433322 22 22233333344 9999999999999999999999999999
Q ss_pred EeCC--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccc
Q 011842 211 VDCL--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPF 285 (476)
Q Consensus 211 v~~~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~ 285 (476)
+|+. .++..|.+.+.+.+...+++..++++++++|+||.+- .+++|+++|++|++ ++++|++|..+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~-----~ii~De~Y~~l~~~~ 224 (401)
T d7aata_ 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNL-----LAYFDMAYQGFASGD 224 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTTTTSC
T ss_pred EeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceE-----EEEEeccchhhhcCC
Confidence 9984 3467899999999876655567888899999999994 58899999999999 999999998776542
Q ss_pred cccCCC-----CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 286 VKKAPK-----VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 286 ~~~~~~-----~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
...... ........++...++|+.+.++++|++++..+..+.......++........... ..+.+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~~~~ 301 (401)
T d7aata_ 225 INRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNP---PMNGARIASLI 301 (401)
T ss_dssp HHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSC---CHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhcccccc---chHHHHHHHHh
Confidence 211110 0111224556677788999999999999987754432211111100000000111 12222222222
Q ss_pred hC--------hhcHHHHHHHHHHHHHHHHHHHHhcCCeE---eecCCeeEEEEecCCcHHHh----hceeecccCCEEEE
Q 011842 361 KG--------YKGFQKEVQKCLRNAHYLKDRLLDAGISA---MLNELSSTVVFERPQDEEFV----RRWQLACQGNIAHV 425 (476)
Q Consensus 361 ~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv~f~~~~~~~~~----~~~~l~~~~~~lRv 425 (476)
+. ...++...+++..+++.+.+.|++.+... ..++...+.+|. +.+.++. ++..+....+ .|+
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~-~ls~e~~~~L~~e~gV~~~pg-~Ri 379 (401)
T d7aata_ 302 LNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFT-GLKPEQVERLTKEFSIYMTKD-GRI 379 (401)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEEC-CCCHHHHHHHHHHHCEECCTT-CEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEec-CCCHHHHHHHHHhCCEEECCC-cEE
Confidence 21 23345566777788899999999876421 223434343442 2223333 3333432222 488
Q ss_pred EEcCCCCHHHHHHHHHHHHHHH
Q 011842 426 VVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 426 ~~~~~~T~edid~~~~~l~~~~ 447 (476)
++. ..++++|+.+.++|.++.
T Consensus 380 s~a-~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 380 SVA-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EGG-GCCTTTHHHHHHHHHHHH
T ss_pred Eec-cCCHHHHHHHHHHHHHHh
Confidence 754 366778999999998875
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=3.4e-18 Score=166.19 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=175.0
Q ss_pred HHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH---HHHcCCeEEEEeCCCCCcc
Q 011842 143 GVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA---ARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 143 ~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~---~~~~G~~v~~v~~~~~g~~ 219 (476)
++.+++++++|.+. +++++|||+||+.++++++. +++.+++....|+++... +...+..++.++. ..+..
T Consensus 38 ~le~~lA~~~G~~~----~~~~~sGt~A~~~al~a~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 110 (343)
T d1m6sa_ 38 ELERLAAETFGKEA----ALFVPSGTMGNQVSIMAHTQ--RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAM 110 (343)
T ss_dssp HHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHHCC--TTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECE-ETTEE
T ss_pred HHHHHHHHHHCCCe----EEEeCCHHHHHHHHHHHHhc--cCCceeccccccceeeecccccccccceeecccc-ccCcc
Confidence 44456788899863 89999999999999998877 889999999999887543 3333445555554 35778
Q ss_pred CHHHHHHHHHcCCC---CcEEEEEee-CCCccccc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCC
Q 011842 220 DCADFKAKLLQNKD---KPAIINVNI-GTTVKGAV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 220 D~~~Le~~l~~~~~---~p~~vv~t~-gtt~tG~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
|++.+++.+...+. ++..++++. ..+..|.+ +++++|+++|++||+ ++|+|++++++........ ..
T Consensus 111 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~-----~~~~D~a~~~~~~~~~~~~-~~ 184 (343)
T d1m6sa_ 111 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGI-----NVHIDGARIFNASIASGVP-VK 184 (343)
T ss_dssp CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-----EEEEEETTHHHHHHHHCCC-HH
T ss_pred CHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCe-----EEEeccccccccccccccc-hh
Confidence 99999999976542 233444443 45555554 457788888899999 9999999976544321111 01
Q ss_pred CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQK 372 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~ 372 (476)
......+..+++.+|..+. ...++++...+..........+.. ...+. .......+.......... .+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~a~~~~~~~~~~~~----~~~ 253 (343)
T d1m6sa_ 185 EYAGYADSVMFCLSKGLCA-PVGSVVVGDRDFIERARKARKMLG-----GGMRQ-AGVLAAAGIIALTKMVDR----LKE 253 (343)
T ss_dssp HHHHTCSEEEEESSSTTCC-SSCEEEEECHHHHHHHHHHHHHHT-----CCCSS-THHHHHHHHHHHHHSSTT----HHH
T ss_pred hhccccccccccccccccc-cccccccccHHHHhhhHhhCcccc-----cccch-hHHHHHhhhhhhhhhHHH----HHH
Confidence 1112256667777776664 445555555554322211111110 01111 111222222222222222 333
Q ss_pred HHHHHHHHHHHHHhcCCeEee-cCCeeEEEEecCCc----HHHh-----hceee-cccCCEEEEEEcCCCCHHHHHHHHH
Q 011842 373 CLRNAHYLKDRLLDAGISAML-NELSSTVVFERPQD----EEFV-----RRWQL-ACQGNIAHVVVMPNVTIDKLDDFLN 441 (476)
Q Consensus 373 ~~~~a~~l~~~L~~~g~~~~~-~~~~~iv~f~~~~~----~~~~-----~~~~l-~~~~~~lRv~~~~~~T~edid~~~~ 441 (476)
..+++.++.+.+.+.+..... +..++++++..++. .++. +++.+ +...+.+|+++++++|+||||++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~ 333 (343)
T d1m6sa_ 254 DHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALN 333 (343)
T ss_dssp HHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHH
Confidence 445556666666666554433 34578888876532 2332 34444 3456789999999999999999999
Q ss_pred HHHHHHHHH
Q 011842 442 ELIENRSTW 450 (476)
Q Consensus 442 ~l~~~~~~~ 450 (476)
+|+++.+++
T Consensus 334 ~l~~v~~~~ 342 (343)
T d1m6sa_ 334 IFEKLFRKF 342 (343)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=4.5e-17 Score=160.01 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLIS 216 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~ 216 (476)
..++++++++|+.+ .++++ .++++|+|+++++.+.+. +++.|++..++|..+...++++|++++.||.+++
T Consensus 58 ~~~Lr~aia~~~~~-~~v~~--d~I~it~G~~~~l~~l~~------~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~ 128 (334)
T d2f8ja1 58 DEELIEKILSYLDT-DFLSK--NNVSVGNGADEIIYVMML------MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD 128 (334)
T ss_dssp CHHHHHHHHHHHTC-SSCCG--GGEEEEEHHHHHHHHHHH------HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTT
T ss_pred cHHHHHHHHHHhcc-cCCCc--ceEEecCcchhHHHHHhh------hccccccccccccccccchhccCCcccccccccc
Confidence 35788888777654 34543 359999999988776543 4578999999999999999999999999999876
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
+..+- ....+..++++++++|++|.+-+.++|.++ .++++ ++++|++|........... ....+
T Consensus 129 ~~~~~--------~~~~~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~-----~ii~Dd~~~~~~~~~~~~~--~~~~~ 192 (334)
T d2f8ja1 129 LRIPE--------VNVGEGDVVFIPNPNNPTGHVFEREEIERI-LKTGA-----FVALDEAYYEFHGESYVDF--LKKYE 192 (334)
T ss_dssp SCCCC--------CCCCTTEEEEEESSCTTTCCCCCHHHHHHH-HTTTC-----EEEEECTTGGGTCCCCGGG--GGTCS
T ss_pred ccccc--------cccccceEEEecccccccceeecHHHhhcc-cccee-----EEeecccchhhcccccccc--cccCc
Confidence 65431 122233478888999999999998888775 45778 9999999854332211111 11112
Q ss_pred cccEEEEcCCCCCC-CCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
--+++.|+.|.++ +++++|+++.++++++.+.....+. ..+. ......++.+. ..+.+++..++..+
T Consensus 193 -~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~~-------~~s~--~~~~~a~~~l~--~~~~~~~~~~~~~~ 260 (334)
T d2f8ja1 193 -NLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPF-------NVSY--VSQMFAKVALD--HREIFEERTKFIVE 260 (334)
T ss_dssp -SEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCTT-------CSCH--HHHHHHHHHHH--THHHHHHHHHHHHH
T ss_pred -eEEEEecCccccchhhhhhhhcccchHHHHHHHHhhccc-------ccch--hhhhhcccccc--cccchhhHHHHHHH
Confidence 2355667778654 7799999999988776653222111 1111 11122222222 24556777888888
Q ss_pred HHHHHHHHHHhcCCeEeecCCeeEEEEecCCc--HHHh-----hceeecccCCEEEEEEcCCCCHHHHHHHHHHHHH
Q 011842 376 NAHYLKDRLLDAGISAMLNELSSTVVFERPQD--EEFV-----RRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIE 445 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~~~~~~~~~iv~f~~~~~--~~~~-----~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~ 445 (476)
+++++.+.|++.|+... ++..+.+.+..+.. .++. +++.+..-.+++|+++. |.||+++++++|++
T Consensus 261 ~r~~l~~~L~~~g~~~~-~~~g~f~~~~~~~~~~~~~~~~L~~~GI~vr~~~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 261 ERERMKSALREMGYRIT-DSRGNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp HHHHHHHHHHHHTCEEC-CCCSSEEEEECCHHHHHHHHHHHHHTTEECEEETTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEC-CCCceEEEEECCCCCHHHHHHHHHHCCCEECCCCCeEEEEcC---CHHHHHHHHHHHhc
Confidence 99999999999997554 44555555555432 2222 23334334578999874 78899999998874
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.77 E-value=3.7e-18 Score=172.77 Aligned_cols=330 Identities=9% Similarity=-0.023 Sum_probs=202.5
Q ss_pred hHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHh-----hC
Q 011842 110 YGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGRE-----VF 182 (476)
Q Consensus 110 ~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~-----~~ 182 (476)
...+.++.....+.......+. ...|..++++++.+|+.+..+.+ .+...++.|.+++.+...+..++.. ..
T Consensus 50 ~~~V~~a~~~~~~~~~~~~~Y~-p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (412)
T d1ajsa_ 50 LPVVRKVEQRIANNSSLNHEYL-PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNN 128 (412)
T ss_dssp CHHHHHHHHHHHTCTTCCCCCC-CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSC
T ss_pred cHHHHHHHHHHHhCCCcCCCCC-CCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCC
Confidence 3556665554444322222222 23477899999999987765543 2333456677888887766655432 14
Q ss_pred CCcEEEecCCCchHHHHHHHHcCCeEEEEeC-C--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHH
Q 011842 183 PDGILYASRESHYSVFKAARMYRMECVKVDC-L--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLV 256 (476)
Q Consensus 183 p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~-~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I 256 (476)
|||.|+++++.+..+...++..|++.+.++. . ..+..|.+.+++.+...+++..++++++++|+||.+-+ +++|
T Consensus 129 pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i 208 (412)
T d1ajsa_ 129 KDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQI 208 (412)
T ss_dssp CCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHH
T ss_pred CCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHH
Confidence 8999999999999999999999998665543 2 33568999998888766556678888899999999954 8999
Q ss_pred HHHHHHhCCCCCceEEEEecCcccccccccccCC-----CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCC
Q 011842 257 IQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP-----KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSN 331 (476)
Q Consensus 257 ~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~-----~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~ 331 (476)
+++|++||+ ++++|++|..+.+....+.. .....+...++...++|+.+.++++|++++.....+.+...
T Consensus 209 ~~la~~~~~-----~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~ 283 (412)
T d1ajsa_ 209 ASVMKRRFL-----FPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRV 283 (412)
T ss_dssp HHHHHHHTC-----EEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHH
T ss_pred HHHHhhCCE-----EEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHH
Confidence 999999999 99999999877654322110 00111224456677888999999999999987643322111
Q ss_pred ccccCCCCCcccCCCCChhHHHHHHHHHHh--------ChhcHHHHHHHHHHHHHHHHHHHHhcCCeE---eecCCeeEE
Q 011842 332 VEYLASRDATIMGSRNGHAPIFLWYTLNRK--------GYKGFQKEVQKCLRNAHYLKDRLLDAGISA---MLNELSSTV 400 (476)
Q Consensus 332 ~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~--------g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv 400 (476)
..++.....+...+.+.. .+.++...+ ..+.++...+++.++++.+.+.|++.+... ...+....+
T Consensus 284 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F 360 (412)
T d1ajsa_ 284 LSQMQKIVRVTWSNPPAQ---GARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMF 360 (412)
T ss_dssp HHHHHHHHHTTTSSCCSH---HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSE
T ss_pred HHHHHHHhhccccccchH---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEE
Confidence 111100000001111111 111111111 123355667777888888999999876431 122223333
Q ss_pred EEecCCcH---HHhhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 401 VFERPQDE---EFVRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 401 ~f~~~~~~---~~~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+|....++ .+.++..+....+ .|+++. ..++++||+++++|.++.+++
T Consensus 361 ~~~~ls~~~v~~L~~e~gV~~vpg-~Ri~~a-g~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 361 SFTGLNPKQVEYLINQKHIYLLPS-GRINMC-GLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp EECCCCHHHHHHHHHTTCEECCTT-SEEEGG-GCCTTTHHHHHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHHhCCEEEeCC-CeEEec-cCCHHHHHHHHHHHHHHHHhc
Confidence 33222222 2233333322111 187754 356788999999999988764
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2e-18 Score=173.79 Aligned_cols=298 Identities=11% Similarity=0.006 Sum_probs=187.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC--CCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELE--NNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~--~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
|..++++++.+|+.+..+.. .+....+.|.+++.+..+++.......+++.|+++++.+.++...++.+|++++.+|.
T Consensus 70 G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~ 149 (396)
T d2q7wa1 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAY 149 (396)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccc
Confidence 34599999999887766543 1222345566776666555544433359999999999999999999999999999998
Q ss_pred CC--CCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 LI--SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~~--~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
.. ++..+...+++.+.....+..++++++++|+||.+- .+++|+++|++|++ ++++|++|..+.+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~-----~ii~De~Y~~l~~~~~~~ 224 (396)
T d2q7wa1 150 YDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGW-----LPLFDFAYQGFARGLEED 224 (396)
T ss_dssp EETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEESCTTSSSCHHHH
T ss_pred ccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCe-----EEEEeccccccccCCccC
Confidence 53 456788888888877666667888889999999985 47799999999999 999999998776543222
Q ss_pred CCCCC----CcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCC-CcccCCCCChhHHHHHHHHHHh--
Q 011842 289 APKVS----FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRD-ATIMGSRNGHAPIFLWYTLNRK-- 361 (476)
Q Consensus 289 ~~~~~----~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~-~~~~~sr~~~~~l~~~~~l~~~-- 361 (476)
..... .......+...++|+.+.++++|++.+....++........+.... ..+.++ ....++++...+
T Consensus 225 ~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~q~~~~~~~~~ 300 (396)
T d2q7wa1 225 AEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNP----PAHGASVVATILSN 300 (396)
T ss_dssp THHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC----CHHHHHHHHHHHTS
T ss_pred chHhhhhhhhcccccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCC----CHHHHHHHHHHhcC
Confidence 11111 1112334455677788889999999998764433211111000000 001111 123333322222
Q ss_pred ------ChhcHHHHHHHHHHHHHHHHHHHHhcCCeE---eecCCeeEEEEecCCcHHH----hhceeecc-cCCEEEEEE
Q 011842 362 ------GYKGFQKEVQKCLRNAHYLKDRLLDAGISA---MLNELSSTVVFERPQDEEF----VRRWQLAC-QGNIAHVVV 427 (476)
Q Consensus 362 ------g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv~f~~~~~~~~----~~~~~l~~-~~~~lRv~~ 427 (476)
..+.+++..++..++++.+.+.|++.+... ...+..+..+|. +-+.++ .++..+.. .++ |+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~-~l~~e~~~~L~~e~gV~~~~g~--Ri~~ 377 (396)
T d2q7wa1 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFS-GLTKEQVLRLREEFGVYAVASG--RVNV 377 (396)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEECCTTC--EEEG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEee-CCCHHHHHHHHHhCCEEECCCC--EEEe
Confidence 123455666777788999999999986432 122223333332 222233 23333321 122 8776
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 011842 428 MPNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 428 ~~~~T~edid~~~~~l~~~ 446 (476)
. ..++++|+++.++|.++
T Consensus 378 a-~l~~~~i~~~~~ai~~v 395 (396)
T d2q7wa1 378 A-GMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp G-GCCTTTHHHHHHHHHHH
T ss_pred c-CCCHHHHHHHHHHHHHh
Confidence 4 45788899999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=6.4e-17 Score=161.02 Aligned_cols=281 Identities=12% Similarity=0.071 Sum_probs=183.7
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-CCccCHH
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI-SGEIDCA 222 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~-~g~~D~~ 222 (476)
+.+.+++++|.+. +++|++||.|+..++.+. ...+|++|+++..+|.+...++...|++++.+++++ ++.+|++
T Consensus 36 ~E~~la~~~g~~~----ai~~~sgt~Al~~al~al-~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~ 110 (376)
T d1mdoa_ 36 LEAAFCRLTGNQY----AVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPE 110 (376)
T ss_dssp HHHHHHHHHCCSE----EEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHH
T ss_pred HHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHh-CCCCCCEEEEecccccccccchhccccceeeecccccccCCCHH
Confidence 3455788888864 789999999999999875 234899999999999999999999999999999985 5789999
Q ss_pred HHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEE
Q 011842 223 DFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVS 302 (476)
Q Consensus 223 ~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~ 302 (476)
+|+++++++|+ +|++++ ..|...|+++|.++|++||+ +++.|+||+.+........ +......++
T Consensus 111 ~l~~~i~~~tk---aIi~~h---~~G~~~~~~~i~~i~~~~~i-----~vIeD~a~a~g~~~~~~~~----g~~g~~~~S 175 (376)
T d1mdoa_ 111 HIEAAITPQTK---AIIPVH---YAGAPADLDAIYALGERYGI-----PVIEDAAHATGTSYKGRHI----GARGTAIFS 175 (376)
T ss_dssp HHHHHCCTTEE---EECCBC---GGGCCCCHHHHHHHHHHHTC-----CBCEECTTCTTCEETTEET----TSSSEEEEE
T ss_pred HHHHhcCCCCe---EEEEeC---CCCCccchhHHHHHHHhcCc-----eEEeccchhccCeeCCeec----ccccCcccc
Confidence 99999987765 665544 57999999999999999999 9999999985533222211 111245677
Q ss_pred EcCCCCCCCCCCceeEEeehh-hhhhh---cCCc----cccCC---CC----CcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 303 VSGHKFVGCPMPCGVQITRME-HINVL---SSNV----EYLAS---RD----ATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 303 ~s~hK~l~~p~~~G~l~~~~~-~~~~l---~~~~----~yl~~---~~----~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
+.++|++.++- .|+++++++ +.+.+ .... .+... .. ....+.......+.. ++.......+.
T Consensus 176 f~~~K~l~~g~-GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~A--ai~~~qL~~~~ 252 (376)
T d1mdoa_ 176 FHAIKNITCAE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNA--AIALAQLQKLD 252 (376)
T ss_dssp CCTTSSSCSSS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHH--HHHHHHHHTHH
T ss_pred CCCcCCCCCCC-CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhh--hhhhhhhhhhh
Confidence 77889998644 577888776 32222 1100 00000 00 000111111111222 22222245678
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEeecCC--e----eEEEEecCC------cHHHhhce---eecc--------------
Q 011842 368 KEVQKCLRNAHYLKDRLLDAGISAMLNEL--S----STVVFERPQ------DEEFVRRW---QLAC-------------- 418 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~----~iv~f~~~~------~~~~~~~~---~l~~-------------- 418 (476)
+.+++..++++++.+.|++.+........ . ..+++.... -+++.+.+ .+.+
T Consensus 253 ~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~ 332 (376)
T d1mdoa_ 253 ALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYR 332 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHH
T ss_pred HHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHH
Confidence 88899999999999999988765443221 1 112222211 12222111 1100
Q ss_pred --------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHH
Q 011842 419 --------------QGNIAHVVVMPNVTIDKLDDFLNELIENR 447 (476)
Q Consensus 419 --------------~~~~lRv~~~~~~T~edid~~~~~l~~~~ 447 (476)
..+.+.+=+++..|.+||+++++.|+++.
T Consensus 333 ~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 333 ERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 02446666788999999999999998864
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.76 E-value=4.2e-17 Score=166.84 Aligned_cols=292 Identities=14% Similarity=0.105 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
...+||+. +++++|.+. +++|++||.||..++.+... ||++|++.... ++........|+..+.+..+
T Consensus 76 t~~~lE~~----~a~l~G~e~----al~~~SGt~An~~a~~~l~~--~Gd~Vi~~~~f-~~~~~~i~~~g~~~~~~~~~~ 144 (456)
T d1c7ga_ 76 NFYHLEKT----VKELFGFKH----IVPTHQGRGAENLLSQLAIK--PGQYVAGNMYF-TTTRFHQEKNGATFVDIVRDE 144 (456)
T ss_dssp HHHHHHHH----HHHHHCCSE----EEEESSHHHHHHHHHHHHCC--TTEEEEESSCC-HHHHHHHHHTTEEEEECBCGG
T ss_pred hHHHHHHH----HHHHhCCCe----EEECCCHHHHHHHHHHHhcC--CCCeEecCcch-HHHHHHHHHcCceeeeccccc
Confidence 45566655 677889975 89999999999999998865 99999887543 33334455667776655432
Q ss_pred ---------CCCccCHHHHHHHHHcCCC-CcEEEEEeeCCCccc----cccCHHHHHHHHHHhCCCCCceEEEEecCccc
Q 011842 215 ---------ISGEIDCADFKAKLLQNKD-KPAIINVNIGTTVKG----AVDDLDLVIQTLEESGFTQDRFYIHCDGALFG 280 (476)
Q Consensus 215 ---------~~g~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~tG----~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g 280 (476)
.++.+|+++|++.|+++++ ...+++++..++..| ..+++++|.++|++||+ .+|+|+|+..
T Consensus 145 ~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~-----~~~~D~a~~~ 219 (456)
T d1c7ga_ 145 AHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGI-----KIFYDATRCV 219 (456)
T ss_dssp GGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-----CEEEECTTHH
T ss_pred cccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCC-----EEEEEcchhh
Confidence 2478999999999987754 334666766666665 34678999999999999 9999999853
Q ss_pred cccccc--c--cCCCCCC-------cccccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCC
Q 011842 281 LMMPFV--K--KAPKVSF-------KKPIGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNG 348 (476)
Q Consensus 281 ~~~~~~--~--~~~~~~~-------~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~ 348 (476)
+...+. . .....+. ...+|++++++||.+++|.| |+++++++ +.+.......+..+ ....+...+
T Consensus 220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~~g--~~~~g~~~~ 296 (456)
T d1c7ga_ 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVYEG--MPSYGGLAG 296 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHHTC--CTTTTTCCH
T ss_pred cchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhccccCC--CcccchhhH
Confidence 211110 0 0000110 12379999999999997554 77877775 33322111111000 011122222
Q ss_pred hhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe-------cCCc----HHHhh-----
Q 011842 349 HAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE-------RPQD----EEFVR----- 412 (476)
Q Consensus 349 ~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~-------~~~~----~~~~~----- 412 (476)
....+++..+.... . .+.+++..++++||.++|.+.|+..+.++..+.+... .+.. ..+..
T Consensus 297 ~~~~a~a~~l~e~~--~-~~~l~~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~ 373 (456)
T d1c7ga_ 297 RDMEAMAIGLREAM--Q-YEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYME 373 (456)
T ss_dssp HHHHHHHHHHHHHT--C-HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHH
Confidence 22233333333221 1 3455666778899999999999876666655555432 1111 11111
Q ss_pred -ceee-----------c-------ccCCEEEEEEcC-CCCHHHHHHHHHHHHHHHHH
Q 011842 413 -RWQL-----------A-------CQGNIAHVVVMP-NVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 413 -~~~l-----------~-------~~~~~lRv~~~~-~~T~edid~~~~~l~~~~~~ 449 (476)
+... + .....+|+++.. ..|+++||.++++|+++.+.
T Consensus 374 ~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~ 430 (456)
T d1c7ga_ 374 TGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp HSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTT
T ss_pred hCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhh
Confidence 1110 0 012458988753 45999999999999887643
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.8e-17 Score=160.74 Aligned_cols=318 Identities=16% Similarity=0.142 Sum_probs=214.4
Q ss_pred CcchHHHHHHHHHhhC-CCCCCcccCcc--ch-hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC
Q 011842 107 DFDYGALAQLQHFSIN-NLGDPFIESNY--GV-HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF 182 (476)
Q Consensus 107 ~~~~~~l~~~l~~~~n-~~g~~~~~~~~--~~-~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~ 182 (476)
++....+.+++...++ ....++...++ |. ...++|..+.+...++||+... -+-..+|+.||+.+..+..+
T Consensus 36 N~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a---nVqp~SGs~AN~av~~All~-- 110 (416)
T d1dfoa_ 36 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA---NVQPHSGSQANFAVYTALLE-- 110 (416)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHCC--
T ss_pred ccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc---eeecccCccHHHHHHHHhcC--
Confidence 3333555566655553 33332222111 11 3468888889999999998642 34467999999999998877
Q ss_pred CCcEEEecCCCc---hHHHHHHHHc--CCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHH
Q 011842 183 PDGILYASRESH---YSVFKAARMY--RMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVI 257 (476)
Q Consensus 183 p~~~Vl~s~~~H---~S~~~~~~~~--G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~ 257 (476)
|||.|+.-+..| .+....+... ..+.+.+++++++.+|++.+++.+.+. +|.+|++ |.+.....-|++++.
T Consensus 111 pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~--kPklIi~--G~S~y~r~~d~~~~r 186 (416)
T d1dfoa_ 111 PGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEH--KPKMIIG--GFSAYSGVVDWAKMR 186 (416)
T ss_dssp TTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHH--CCSEEEE--ECSSCCSCCCHHHHH
T ss_pred CCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHh--ccceEEe--cccccccccCHHHHH
Confidence 999999877765 3332222222 346777888888999999999988764 3447766 566677788999999
Q ss_pred HHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeeh---hhhhhhcCCccc
Q 011842 258 QTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRM---EHINVLSSNVEY 334 (476)
Q Consensus 258 ~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~---~~~~~l~~~~~y 334 (476)
++|++.|. ++++|.+|-.+.+....+..++. .+|+++++.||.|.+| +.|+++++. ++.+.+.... +
T Consensus 187 eiad~vga-----~l~~D~aH~~GLIa~g~~~sP~~---~aDvvt~tThKtlrGP-rggiI~~~~~~~~~~~~i~~av-f 256 (416)
T d1dfoa_ 187 EIADSIGA-----YLFVDMAHVAGLVAAGVYPNPVP---HAHVVTTTTHKTLAGP-RGGLILAKGGSEELYKKLNSAV-F 256 (416)
T ss_dssp HHHHHTTC-----EEEEECTTTHHHHHHTSSCCCTT---TSSEEEEESSSTTCCC-SCEEEEESSCCHHHHHHHHHHH-T
T ss_pred HHHHhcCc-----eEEcchhhhhcceeccccCCccc---ccceeeeehhhcccCC-CceEEEeccchHhHHHHHHhhh-C
Confidence 99999999 99999999755554444443343 2799999999999965 678888873 3333321110 0
Q ss_pred cCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC---c-HH
Q 011842 335 LASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ---D-EE 409 (476)
Q Consensus 335 l~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~---~-~~ 409 (476)
+.++++.......+...+++......+++..++..++++.|.+.|.+.|+.++.. ..+.++.+...+ + ..
T Consensus 257 -----Pg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~~~G~~ 331 (416)
T d1dfoa_ 257 -----PGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKE 331 (416)
T ss_dssp -----TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHH
T ss_pred -----cccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecccCCCHHH
Confidence 1224444334445566677765566789999999999999999999999977653 234566665421 1 11
Q ss_pred ---Hhhce-------eecc------cCCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 410 ---FVRRW-------QLAC------QGNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 410 ---~~~~~-------~l~~------~~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
..++. .+|. ....+|+.+ .....++|++++.+.|.++.+
T Consensus 332 a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~ 390 (416)
T d1dfoa_ 332 ADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLD 390 (416)
T ss_dssp HHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 12211 2232 135799975 456689999999999887764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.75 E-value=8.2e-18 Score=170.25 Aligned_cols=303 Identities=9% Similarity=0.017 Sum_probs=188.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCC--CcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeC
Q 011842 136 HSRQFEVGVLDWFARLWELEN--NEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDC 213 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~--~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~ 213 (476)
|..++++++.+++.+..+... +....+.+.+++.+...++.......||+.|+++++.+..+...++..|++++.+|.
T Consensus 74 G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~ 153 (412)
T d1yaaa_ 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPY 153 (412)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEEC
T ss_pred CCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccc
Confidence 567999999998877655321 111122233444444444433333459999999999999999999999999999997
Q ss_pred C--CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCccccccccccc
Q 011842 214 L--ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKK 288 (476)
Q Consensus 214 ~--~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~ 288 (476)
. .++..|.+.+++.+...++...++++++++|+||.+- .+++|+++|+++++ ++++|++|..+.+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~-----~ii~De~Y~~l~~~~~~~ 228 (412)
T d1yaaa_ 154 WANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNH-----IALFDTAYQGFATGDLDK 228 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC-----EEEEEESCTTTSSSCHHH
T ss_pred cccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCE-----EEeecceeeecccCCccc
Confidence 4 3567899999999988777777889999999999995 48999999999999 999999998776643211
Q ss_pred CCC--------CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC----CCcccCCCCChhHHHHHH
Q 011842 289 APK--------VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR----DATIMGSRNGHAPIFLWY 356 (476)
Q Consensus 289 ~~~--------~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~----~~~~~~sr~~~~~l~~~~ 356 (476)
.+. .+....+-.+...++++.+.++++|++++..+.++.+......+... ......+. ..+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~ 305 (412)
T d1yaaa_ 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNP---PAYGAKI 305 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSC---CHHHHHH
T ss_pred chhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHH
Confidence 110 11112233344445557788999999999876432211100000000 00001111 1233333
Q ss_pred HHHHhC--------hhcHHHHHHHHHHHHHHHHHHHHhcCCeE---eecCCeeEEEEecCCcHHH----hhceeecccCC
Q 011842 357 TLNRKG--------YKGFQKEVQKCLRNAHYLKDRLLDAGISA---MLNELSSTVVFERPQDEEF----VRRWQLACQGN 421 (476)
Q Consensus 357 ~l~~~g--------~~g~~~~~~~~~~~a~~l~~~L~~~g~~~---~~~~~~~iv~f~~~~~~~~----~~~~~l~~~~~ 421 (476)
+...+. .+.++...+++.++++.|.+.|++.+... ..++...+.+|. +-+.++ .+++.+....+
T Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~-~ls~e~~~~L~~e~~V~~~~g 384 (412)
T d1yaaa_ 306 VAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFT-GLTPQMVKRLEETHAVYLVAS 384 (412)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEECCTT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEec-CcCHHHHHHHHHhCCEEECCC
Confidence 332221 23355666777788899999998876422 223333343342 223333 33333433222
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.|+++. .++++.||.++++|.++.+.
T Consensus 385 -~Ris~~-g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 385 -GRASIA-GLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -SEEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred -CEEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 387764 36678899999999998764
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=9e-17 Score=158.01 Aligned_cols=317 Identities=13% Similarity=0.114 Sum_probs=212.8
Q ss_pred cchHHHHHHHHHhh-CCCCCCcccC--ccc-hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCC
Q 011842 108 FDYGALAQLQHFSI-NNLGDPFIES--NYG-VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFP 183 (476)
Q Consensus 108 ~~~~~l~~~l~~~~-n~~g~~~~~~--~~~-~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p 183 (476)
+....+.+++...+ |....++... ..| ....++|..+.+...++||+.. .-+-..+|+.||+.+..+..+ |
T Consensus 34 ~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~---anVqp~SGs~An~av~~all~--p 108 (405)
T d1kl1a_ 34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH---ANVQPHSGAQANMAVYFTVLE--H 108 (405)
T ss_dssp CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSE---EECCCSSHHHHHHHHHHHHCC--T
T ss_pred cCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCc---ceeeccCchHHHHHHHHHhcC--C
Confidence 33355556655555 4333222211 111 1456889889999999999864 234456999999999988877 9
Q ss_pred CcEEEecCC---CchHHHHHHH--HcCCeEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHH
Q 011842 184 DGILYASRE---SHYSVFKAAR--MYRMECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVI 257 (476)
Q Consensus 184 ~~~Vl~s~~---~H~S~~~~~~--~~G~~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~ 257 (476)
||.|+.-+. .|.|...... ....+++.++++ +++.+|++++++.+++. +|.+|++ |.+..-..-|++++.
T Consensus 109 GD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~--G~S~y~r~~d~~~~r 184 (405)
T d1kl1a_ 109 GDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH--RPKLIVA--AASAYPRIIDFAKFR 184 (405)
T ss_dssp TCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE--CCSSCCSCCCHHHHH
T ss_pred CCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhh--CcceEEe--cccccccccChHHHH
Confidence 999997664 4555432221 224578888888 45789999999999865 3457766 555555667899999
Q ss_pred HHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC
Q 011842 258 QTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS 337 (476)
Q Consensus 258 ~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~ 337 (476)
++|++.|. ++++|.+|-.+.+....+..++ +.+|+++.+.||.|.+| +.|++++++++.+.+.... +
T Consensus 185 eIad~vga-----~l~~D~aH~~GLIa~g~~~~P~---~~aDvvt~tThKtlrGP-rgg~I~~~~~~~~~i~~av-f--- 251 (405)
T d1kl1a_ 185 EIADEVGA-----YLMVDMAHIAGLVAAGLHPNPV---PYAHFVTTTTHKTLRGP-RGGMILCQEQFAKQIDKAI-F--- 251 (405)
T ss_dssp HHHHHHTC-----EEEEECTTTHHHHHTTSSCCST---TTCSEEEEESSSTTCCC-SCEEEEECHHHHHHHHHHH-T---
T ss_pred HHHhhhCC-----EEecchhhHhhhhhhhhcCChh---hhhhheeccccccccCC-CCceEEecchhHHHHHhhh-C---
Confidence 99999999 9999999965554444443334 34899999999999965 6788888887654432110 0
Q ss_pred CCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCeeEEEEecCC----cH---H
Q 011842 338 RDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELSSTVVFERPQ----DE---E 409 (476)
Q Consensus 338 ~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~iv~f~~~~----~~---~ 409 (476)
+.++++.......+...+++......++++.++..++|+.|.+.|.+.|+.++.. ..+.++.+...+ .. .
T Consensus 252 --Pg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~ 329 (405)
T d1kl1a_ 252 --PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEK 329 (405)
T ss_dssp --TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHH
T ss_pred --cccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccCCcHHHHHH
Confidence 1224444334445555666654456789999999999999999999999977643 234566655321 11 1
Q ss_pred Hhhcee-------eccc------CCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 410 FVRRWQ-------LACQ------GNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 410 ~~~~~~-------l~~~------~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
.+++.. +|.. .+.+|+.+ .....++|+.++.+.|.++++
T Consensus 330 ~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~ 385 (405)
T d1kl1a_ 330 VLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp HHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 122211 2221 25799975 466689999999999987763
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=8.5e-16 Score=154.60 Aligned_cols=342 Identities=15% Similarity=0.078 Sum_probs=222.2
Q ss_pred CcHHHHHHHHHHHHhcccc---cccCCCCcCCcchHHHHHHHH--HhhCCCCCCcccCccchhhHHHHHHHHHHHHHHcC
Q 011842 79 AYMAGVLARYRKTLMERTK---HHLGYPYNLDFDYGALAQLQH--FSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE 153 (476)
Q Consensus 79 ~~~~~il~~~~~~~~~~~~---~~~g~p~~~~~~~~~l~~~l~--~~~n~~g~~~~~~~~~~~~~~le~~~~~~la~l~g 153 (476)
.+-.++++.+.+....+.. .++|--...-+.++.+..++. ..++.. .++. .....+.-++--+...+++++.|
T Consensus 45 ~sE~e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i~~~~~~~~~~t~y-tPyq-pE~sQG~Lq~l~e~q~~l~eltG 122 (437)
T d1wyua1 45 LPEWKVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAY-TPYQ-PEVSQGVLQATFEYQTMIAELAG 122 (437)
T ss_dssp CCHHHHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCC-SCCS-GGGCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCCcCccccCcccCCceeCHHHHHHHhChhhhhhC-CCcc-hHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567889999888766532 223311222223455555432 222221 1111 11234667788899999999999
Q ss_pred CCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCCCccCHHHHHHHHH
Q 011842 154 LENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLISGEIDCADFKAKLL 229 (476)
Q Consensus 154 ~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~ 229 (476)
++... .-...|.+|.+.++++++....+..++++...|.+.. ..++..|++++.+|.+..+. +.++ +.
T Consensus 123 md~~n---~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~-~~~~----~~ 194 (437)
T d1wyua1 123 LEIAN---ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRT-PLPE----VG 194 (437)
T ss_dssp SSEEC---SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBC-CCCC----CC
T ss_pred CCccc---cCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccc-hhhh----hc
Confidence 98421 2345778888999988887666778888999997754 44567799999999864433 3222 22
Q ss_pred cCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCC
Q 011842 230 QNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFV 309 (476)
Q Consensus 230 ~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l 309 (476)
+ ..+.|+++.|+| .|.++++++|++++++.|. ++++|+.--+...- + -.+.-++|++..+ ||-+
T Consensus 195 ~---~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~-----l~~~~ad~~al~~l--~----~Pg~~GaDi~~g~-~q~f 258 (437)
T d1wyua1 195 E---EVGAVVVQNPNF-LGALEDLGPFAEAAHGAGA-----LFVAVADPLSLGVL--K----PPGAYGADIAVGD-GQSL 258 (437)
T ss_dssp T---TEEEEEEESSCT-TSBCCCHHHHHHHHHHTTC-----EEEEECCTTGGGTB--C----CHHHHTCSEEEEE-CTTT
T ss_pred c---ceeEEEEccccc-cccccchHHHHHHhhhccc-----eEEeeechhhhhcc--c----cccccccceEeec-ccee
Confidence 2 335788887754 6999999999999999999 88887664321111 0 0112248999999 6666
Q ss_pred CCCCCc-----eeEEeehhhhhhhcCCc-----------cccC---CC--------CCcccCCCCChhHHHHHHHHHHhC
Q 011842 310 GCPMPC-----GVQITRMEHINVLSSNV-----------EYLA---SR--------DATIMGSRNGHAPIFLWYTLNRKG 362 (476)
Q Consensus 310 ~~p~~~-----G~l~~~~~~~~~l~~~~-----------~yl~---~~--------~~~~~~sr~~~~~l~~~~~l~~~g 362 (476)
++|.+. |++.+++++.+.++... .|.. .. ..+-.|+-.+..++..|+.+.++|
T Consensus 259 g~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG 338 (437)
T d1wyua1 259 GLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG 338 (437)
T ss_dssp TCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcC
Confidence 666654 89999998766553211 1110 00 011124444445667788889999
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC--eeEEEEecCCc-HHHh-----hceeec------ccCCEEEEEEc
Q 011842 363 YKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL--SSTVVFERPQD-EEFV-----RRWQLA------CQGNIAHVVVM 428 (476)
Q Consensus 363 ~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~iv~f~~~~~-~~~~-----~~~~l~------~~~~~lRv~~~ 428 (476)
.+|++++.++...+|+|+.++|.+.+......+. ...+++..+.+ .++. ++++.+ ...+.+.++++
T Consensus 339 ~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~T 418 (437)
T d1wyua1 339 PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAAT 418 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECC
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCCHHHHHHHHHhCCCCCCcccccCCCCCeEEEecC
Confidence 9999999999999999999999997543443332 34455555432 2222 233321 12468899999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIEN 446 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~ 446 (476)
..+|++|||+|+++|+++
T Consensus 419 E~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 419 ELHEEEDLLALREALKEV 436 (437)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999999886
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.8e-17 Score=163.26 Aligned_cols=326 Identities=10% Similarity=-0.019 Sum_probs=199.0
Q ss_pred CCcCCcchHHHHHHHHHhhCC--CC-CCcccCccchhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHH
Q 011842 103 PYNLDFDYGALAQLQHFSINN--LG-DPFIESNYGVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGR 179 (476)
Q Consensus 103 p~~~~~~~~~l~~~l~~~~n~--~g-~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~ 179 (476)
|.....+...+..+-....|. .+ +....++.+....++.+++++.+++++|.+. ++.+++++|++++++.+.....
T Consensus 7 pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~-~~~v~~~~gs~t~~~~a~~~~~ 85 (360)
T d1bjna_ 7 SGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPS-NYKVLFCHGGGRGQFAAVPLNI 85 (360)
T ss_dssp SSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCchHHHHhhhhhcc
Confidence 433333444445544444431 11 1122233344567888999999999999974 4568899999998887765544
Q ss_pred hhCCCcEEEecCCCchH--HHHHHHHcCCeEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHH
Q 011842 180 EVFPDGILYASRESHYS--VFKAARMYRMECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVI 257 (476)
Q Consensus 180 ~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~ 257 (476)
. .+++.+++....++. +...++..|..++.+..+.++..+.+.+++.+..+++ ++.+++.+|.||...|++++.
T Consensus 86 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~~~~~t~~~~~~~~i~ 161 (360)
T d1bjna_ 86 L-GDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDN---AAYMHYCPNETIDGIAIDETP 161 (360)
T ss_dssp C-TTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSS---CSCEEECSEETTTTEECCCCC
T ss_pred c-ccccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCc---eeEEEecccccccCcccccee
Confidence 3 366666666555433 3455555566666666555555666666666555554 666667788889888887664
Q ss_pred HHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCC
Q 011842 258 QTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS 337 (476)
Q Consensus 258 ~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~ 337 (476)
++.+++ .+++|++++.+..+ ++.. .+|+..+++||+++.|.+.++++.+....+.......+...
T Consensus 162 --~~~~~~-----~v~vDa~~~~~~~~-------vd~~-~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (360)
T d1bjna_ 162 --DFGADV-----VVAADFSSTILSRP-------IDVS-RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDY 226 (360)
T ss_dssp --CCCTTC-----CEEEECTTTTTSSC-------CCGG-GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCH
T ss_pred --cccccc-----eeeeeeecccccee-------eeec-cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhh
Confidence 456777 89999998876554 3332 38999999999999999999988877643322211111110
Q ss_pred C----CCcccCCCCCh-hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCC----eeEEEEecCCc-
Q 011842 338 R----DATIMGSRNGH-APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNEL----SSTVVFERPQD- 407 (476)
Q Consensus 338 ~----~~~~~~sr~~~-~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~iv~f~~~~~- 407 (476)
. ......+.... ........+......+.....++..+.+.++...+...+........ ..+++|..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~ 306 (360)
T d1bjna_ 227 SILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA 306 (360)
T ss_dssp HHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG
T ss_pred HHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc
Confidence 0 00011111111 11222222333334456667777777777777777777665543321 35677888753
Q ss_pred --HHHh-----hceeeccc---CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 408 --EEFV-----RRWQLACQ---GNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 408 --~~~~-----~~~~l~~~---~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
..+. +++.+... -+.+|+++..++|.|||++|+++|++..+
T Consensus 307 ~~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 307 LDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp GHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 2222 22222111 13489999999999999999999998654
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=2.4e-17 Score=165.57 Aligned_cols=302 Identities=13% Similarity=0.044 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCC-
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCL- 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~- 214 (476)
|..++++++.+++.+.-+... ....++|+||+.+..+++.......+++.|+++++.+..+...++.+|++++.+|..
T Consensus 70 G~~~lr~aia~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~ 148 (394)
T d2ay1a_ 70 GEPEFQKAMGELILGDGLKSE-TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFD 148 (394)
T ss_dssp CCHHHHHHHHHHHHGGGCCGG-GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEE
T ss_pred CCHHHHHHHHHHHhccccccc-cccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccc
Confidence 667999999999887655542 234566777776665554443333489999999999999999999999999999985
Q ss_pred -CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC---HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 -ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD---LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 -~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~---l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
.++..+.+.+++.+....++..++++++++||||.+-+ +++|+++|++|++ ++++|++|..+.+.......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~-----~ii~De~Y~~l~~~~~~~~~ 223 (394)
T d2ay1a_ 149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA-----LPLIDLAYQGFGDGLEEDAA 223 (394)
T ss_dssp TTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC-----EEEEEECCTTSSSCHHHHHH
T ss_pred hhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceE-----EEEEeccchhhcccccccch
Confidence 34567888888888776655668888899999999854 8899999999999 99999999887654322111
Q ss_pred CC--CCc--ccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHH-----HHHh
Q 011842 291 KV--SFK--KPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYT-----LNRK 361 (476)
Q Consensus 291 ~~--~~~--~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~-----l~~~ 361 (476)
.. ... .....+..+++++.+.++++|++.+.....+........+.....+.....+...+...... +...
T Consensus 224 ~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (394)
T d2ay1a_ 224 GTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD 303 (394)
T ss_dssp HHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred hhhhhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHH
Confidence 00 011 12445556677788889999999998764432211111110000000111111111111111 1111
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCCe---EeecCCeeEEEEecCCcHHHh----hceeecccCCEEEEEEcCCCCHH
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGIS---AMLNELSSTVVFERPQDEEFV----RRWQLACQGNIAHVVVMPNVTID 434 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~~---~~~~~~~~iv~f~~~~~~~~~----~~~~l~~~~~~lRv~~~~~~T~e 434 (476)
..+.++.+.+++.++++.|.+.|++.+.. ....+..++.+|. +-+.++. .++.+.--.+ .|+++. ..+.+
T Consensus 304 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~-~ls~~~~~~L~~~~~V~~~~g-~Ri~~a-~l~~~ 380 (394)
T d2ay1a_ 304 WMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRL-GATPEQVKRIKEEFGIYMVGD-SRINIA-GLNDN 380 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEECCTT-CEEEGG-GCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEec-CcCHHHHHHHHHhCCEEecCC-CEEEec-CCCHH
Confidence 22345566677778888899999886422 1223334444443 2223332 3333321111 388764 57789
Q ss_pred HHHHHHHHHHHH
Q 011842 435 KLDDFLNELIEN 446 (476)
Q Consensus 435 did~~~~~l~~~ 446 (476)
+|+++.++|.++
T Consensus 381 ~i~~l~~ai~~v 392 (394)
T d2ay1a_ 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.73 E-value=2.5e-16 Score=161.58 Aligned_cols=291 Identities=15% Similarity=0.123 Sum_probs=172.7
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCCCchHHHHHHHHcCCeEEEEeC-----
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRESHYSVFKAARMYRMECVKVDC----- 213 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~----- 213 (476)
+.+.+++++|.+. +++|++||+||..++.+++.. .++..++.+...|.+........|...+.++.
T Consensus 80 le~~~a~l~g~~~----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~ 155 (465)
T d1ax4a_ 80 LKDKAKELFNYDY----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFD 155 (465)
T ss_dssp HHHHHHHHHCCCE----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGC
T ss_pred HHHHHHHHHCCCE----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccccCC
Confidence 3345677889874 899999999999999998763 23344556665566777777778887766532
Q ss_pred -----CCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccc--cc---cCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 214 -----LISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKG--AV---DDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 214 -----~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG--~i---d~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
...|.+|+++|+++|.+.+.....+++...++.+| .+ +++++|.++|++||+ ++|+|+|+..+..
T Consensus 156 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~-----~l~~D~~~~~~~~ 230 (465)
T d1ax4a_ 156 SETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI-----FVVMDSARFCENA 230 (465)
T ss_dssp TTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTC-----CEEEECTTHHHHH
T ss_pred CCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCC-----EEEEECcchhhhh
Confidence 13578999999999987644333333333433333 22 468999999999999 9999999864322
Q ss_pred cccc-------cCCC----CCCcccccEEEEcCCCCCCCCCCceeEEeehhh--hhhhcC-CccccCCCCCcccCCCCCh
Q 011842 284 PFVK-------KAPK----VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSS-NVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 284 ~~~~-------~~~~----~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~--~~~l~~-~~~yl~~~~~~~~~sr~~~ 349 (476)
.... .... .+....+|+++++.||.++ +++.|+++.++.. ...... ...+... .+ .+.-
T Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~--- 303 (465)
T d1ax4a_ 231 YFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAIRDNEEIFTLARQRCVPMEGF--VT-YGGL--- 303 (465)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEESSCHHHHHHHHHHHHHHTCS--TT-TTTC---
T ss_pred cccccccccccccchhhhccccccccceeEeecccCcc-cccceeEeecchHHHHHhhhccccccccC--CC-cchh---
Confidence 1100 0000 0111237999999999888 4667888887642 111100 0011000 00 1111
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEec----CC--cH-----HHhh------
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFER----PQ--DE-----EFVR------ 412 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~~----~~--~~-----~~~~------ 412 (476)
......+....+.....++..++..+++++|.++|++.++..+.+...+.+.+.. +. .. .+..
T Consensus 304 ~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 383 (465)
T d1ax4a_ 304 AGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES 383 (465)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhc
Confidence 1111111111111111245566777789999999999988766555555554432 11 00 1111
Q ss_pred ceee------------------cccCCEEEEEEc-CCCCHHHHHHHHHHHHHHHHHH
Q 011842 413 RWQL------------------ACQGNIAHVVVM-PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 413 ~~~l------------------~~~~~~lRv~~~-~~~T~edid~~~~~l~~~~~~~ 450 (476)
+... ....+.+|+++. ...|+||||+++++|+++.++.
T Consensus 384 GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 384 GVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440 (465)
T ss_dssp CEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred CceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1110 011257898764 3459999999999999987764
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.72 E-value=9.5e-17 Score=159.02 Aligned_cols=294 Identities=11% Similarity=0.022 Sum_probs=181.3
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchH--HHHHHHHcCCeEEEE
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYS--VFKAARMYRMECVKV 211 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S--~~~~~~~~G~~v~~v 211 (476)
.....++.+++++.+++++|.+. ++.+++++|++++++.++..... .+++.+++-...+++ +...++..|..+..+
T Consensus 43 s~ef~~~~~~~r~~l~~l~~~~~-~~~i~~~~gs~t~~~ea~~~~l~-~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~ 120 (361)
T d2c0ra1 43 GAVYEAVHNEAQARLLALLGNPT-GYKVLFIQGGASTQFAMIPMNFL-KEGQTANYVMTGSWASKALKEAKLIGDTHVAA 120 (361)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCS-SEEEEEESSHHHHHHHHHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC-CCEEEEECCCchHHHHHHHhccc-cCCCceEEEeechhhhhhhhhhhhcCceeeee
Confidence 44577899999999999999984 46788999988888877655443 256666655544443 567788889999999
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+.+....++++.+++.+..++ ++.+ ++.||...|+.+|.++|+++|+ +++||++++.+..|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----~~~v---~~~tg~~~~~~~i~~~~~~~~a-----l~~vDavss~g~~~------- 181 (361)
T d2c0ra1 121 SSEASNYMTLPKLQEIQLQDN----AAYL---HLTSNETIEGAQFKAFPDTGSV-----PLIGDMSSDILSRP------- 181 (361)
T ss_dssp ECGGGTTCSCCCGGGCCCCTT----EEEE---EEESEETTTTEECSSCCCCTTS-----CEEEECTTTTTSSC-------
T ss_pred ccccccccchhhhhhhcccCc----ceEE---EEecccceecceEEEeeccCCc-----eEEEEeeccccccc-------
Confidence 887777788888777655443 3333 3456888888999999999999 99999999887766
Q ss_pred CCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccC---CCC-CcccCCCCChhHHHHHHHHHH-hChhcH
Q 011842 292 VSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLA---SRD-ATIMGSRNGHAPIFLWYTLNR-KGYKGF 366 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~---~~~-~~~~~sr~~~~~l~~~~~l~~-~g~~g~ 366 (476)
++..+ .|+...++||.++.|.+.++++......+.......+.. ... .....+...........+... ....+.
T Consensus 182 id~~~-~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (361)
T d2c0ra1 182 FDLNQ-FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGL 260 (361)
T ss_dssp CCGGG-CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccc-ceeEEEecccccccccCcEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccch
Confidence 45443 566677789999866555555544433221111111110 000 000111111111111112221 223344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCe-Eee-cCC--e-eEEEEecCCc---HHHh-----hceeeccc---CCEEEEEEcCC
Q 011842 367 QKEVQKCLRNAHYLKDRLLDAGIS-AML-NEL--S-STVVFERPQD---EEFV-----RRWQLACQ---GNIAHVVVMPN 430 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~g~~-~~~-~~~--~-~iv~f~~~~~---~~~~-----~~~~l~~~---~~~lRv~~~~~ 430 (476)
.....+....+..+.+........ ... .+. + .+++|..++. .++. +++.+..+ -+.+|++++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~ 340 (361)
T d2c0ra1 261 EGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNA 340 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTT
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCC
Confidence 555555556666666665554322 222 221 3 4577887753 2222 12222111 12499999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENRST 449 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~~~ 449 (476)
+|.|||++|+++|++..++
T Consensus 341 ~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 341 VPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999987654
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6.6e-18 Score=169.99 Aligned_cols=303 Identities=12% Similarity=-0.003 Sum_probs=177.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHH--HhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEe
Q 011842 135 VHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVG--REVFPDGILYASRESHYSVFKAARMYRMECVKVD 212 (476)
Q Consensus 135 ~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa--~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~ 212 (476)
.|..++++++.+++.+..+...+....+.+.+++.+...++.+. ....||+.|+++++.+.++...++.+|++++.+|
T Consensus 70 ~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~ 149 (397)
T d3tata_ 70 EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYP 149 (397)
T ss_dssp TCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECC
T ss_pred ccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEe
Confidence 36679999999988776665422233566666665544333222 1234999999999999999999999999999999
Q ss_pred CCCC--CccCHHHHHHHHHcCCCCcEEEEEeeCCCcccccc---CHHHHHHHHHHhCCCCCceEEEEecCcccccccccc
Q 011842 213 CLIS--GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVD---DLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVK 287 (476)
Q Consensus 213 ~~~~--g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id---~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~ 287 (476)
++.+ +..|.+++.+.+...+.+..++++++++|+||.+- .+++|+++|++|++ ++++|++|+.+.+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~-----~ii~De~Y~~l~~~~~~ 224 (397)
T d3tata_ 150 WYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAREL-----IPFLDIAYQGFGAGMEE 224 (397)
T ss_dssp CCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTC-----CCEECBSCTTSSSCHHH
T ss_pred cchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCe-----eEEeehhhhhhccCCcc
Confidence 8643 56789998888876665666888888999999984 57899999999999 99999999887653221
Q ss_pred cCCCC----CCcccccEEEEcCCC-CCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH--
Q 011842 288 KAPKV----SFKKPIGSVSVSGHK-FVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR-- 360 (476)
Q Consensus 288 ~~~~~----~~~~~~Dsi~~s~hK-~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~-- 360 (476)
..+.. .....+ ++..++.| +.+.++++|++.......+........+.....+...+.+......+...+..
T Consensus 225 ~~~~~~~~~~~~~~~-i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 303 (397)
T d3tata_ 225 DAYAIRAIASAGLPA-LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEA 303 (397)
T ss_dssp HHHHHHHHHTTTCCC-EECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHH
T ss_pred cchhhhhhhhcCCce-EEEecCcccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHH
Confidence 11100 011112 33344444 67778999999988764332211100000000001111111211111111110
Q ss_pred ---hChhcHHHHHHHHHHHHHHHHHHHHhcCCe---EeecCCeeEEEEecCCcHHH----hhceeecccCCEEEEEEcCC
Q 011842 361 ---KGYKGFQKEVQKCLRNAHYLKDRLLDAGIS---AMLNELSSTVVFERPQDEEF----VRRWQLACQGNIAHVVVMPN 430 (476)
Q Consensus 361 ---~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~---~~~~~~~~iv~f~~~~~~~~----~~~~~l~~~~~~lRv~~~~~ 430 (476)
...+.++...++..++++.+.+.|...+.. ...++.....+| .+.+.++ .+++.+....+ .|+++. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~-~~ls~e~~~~L~~e~~V~l~~g-~Ri~~a-~ 380 (397)
T d3tata_ 304 LKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSY-TGLSAAQVDRLREEFGVYLIAS-GRMCVA-G 380 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCC-CCCCHHHHHHHTTTTCEECCSS-SCCBTT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEe-cCcCHHHHHHHHHhCCEEeCCC-CEEEec-c
Confidence 011223344455555666666666654311 112233333222 2222233 33333322211 276653 4
Q ss_pred CCHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIEN 446 (476)
Q Consensus 431 ~T~edid~~~~~l~~~ 446 (476)
.++++||++.++|.++
T Consensus 381 ~~~~~i~~~~~ai~~v 396 (397)
T d3tata_ 381 LNTANVQRVAKAFAAV 396 (397)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7889999999998765
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=4.2e-16 Score=160.01 Aligned_cols=294 Identities=12% Similarity=0.046 Sum_probs=175.5
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-------CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC-
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-------FPDGILYASRESHYSVFKAARMYRMECVKVDCLI- 215 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~- 215 (476)
+.+.+++++|.+. ++++++||+||..++.+++.. .+...+..+...|+.....+.+.|+.++.++.+.
T Consensus 79 le~~~a~l~G~~~----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 154 (467)
T d2v1pa1 79 LAESVKNIFGYQY----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEA 154 (467)
T ss_dssp HHHHHHHHTCCSE----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTT
T ss_pred HHHHHHHHHCCCE----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccc
Confidence 4455788999874 799999999999999998762 1233466666677777888888999998887653
Q ss_pred ---------CCccCHHHHHHHHHcCCC-CcEEEEEeeCCCccc----cccCHHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 216 ---------SGEIDCADFKAKLLQNKD-KPAIINVNIGTTVKG----AVDDLDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 216 ---------~g~~D~~~Le~~l~~~~~-~p~~vv~t~gtt~tG----~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.+.+|+++|++.+.+.+. ...++++....+..| ..+++++|.++|++||+ ++|+|+|+.++
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~-----~l~~D~a~~~~ 229 (467)
T d2v1pa1 155 FDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI-----PVVMDSARFAE 229 (467)
T ss_dssp TCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC-----CEEEECTTHHH
T ss_pred cccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCC-----EEEEechhhhc
Confidence 367999999999986543 223444443333333 33679999999999999 99999998543
Q ss_pred ccccc-------ccCCCC----CCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCCh
Q 011842 282 MMPFV-------KKAPKV----SFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGH 349 (476)
Q Consensus 282 ~~~~~-------~~~~~~----~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~ 349 (476)
..... .+.... +....+|+++++.||.+++| ..|+++.+++.+..... ............... +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~-~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 306 (467)
T d2v1pa1 230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP-MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG--GL 306 (467)
T ss_dssp HHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS-SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC--CC
T ss_pred cccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC-CceeEEecchhhhhHHHhhcccccccccCcchh--hh
Confidence 21110 000000 01123899999999999864 45777777653221110 000000000000111 11
Q ss_pred hHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecCCeeEEEEe---cCC---c----HH----Hhhcee
Q 011842 350 APIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNELSSTVVFE---RPQ---D----EE----FVRRWQ 415 (476)
Q Consensus 350 ~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~~~~iv~f~---~~~---~----~~----~~~~~~ 415 (476)
....+++....+......+..++..+++++|.++|++.+............... .+. . .. +.....
T Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G 386 (467)
T d2v1pa1 307 EGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAG 386 (467)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCcccCCCccceeecchhhcCCcchhhhhhHHHHHHHHHHcC
Confidence 122222222222222235677777889999999999988754332222222211 111 0 00 111110
Q ss_pred --------------------ecccCCEEEEEEc-CCCCHHHHHHHHHHHHHHHHH
Q 011842 416 --------------------LACQGNIAHVVVM-PNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 416 --------------------l~~~~~~lRv~~~-~~~T~edid~~~~~l~~~~~~ 449 (476)
.+.....+|+++. ..+|+||||+++++|+++.+.
T Consensus 387 i~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 387 IRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp EECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1122457898764 456999999999999998754
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.7e-14 Score=146.71 Aligned_cols=357 Identities=16% Similarity=0.152 Sum_probs=229.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHhccccc-----ccCCCCcCCcchHHHHHHHHHhhCCCCCCcccCccchhhHHHHHHHHHH
Q 011842 73 FTGDKEAYMAGVLARYRKTLMERTKH-----HLGYPYNLDFDYGALAQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDW 147 (476)
Q Consensus 73 ~~~~~~~~~~~il~~~~~~~~~~~~~-----~~g~p~~~~~~~~~l~~~l~~~~n~~g~~~~~~~~~~~~~~le~~~~~~ 147 (476)
++|+ .+-.++++++.+....+... .+|. ...-++++....+.. .+..+ .+|.......|.-+.--+...+
T Consensus 40 ~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~-~~~hy~P~v~~~~~~-~~TaY-TPYQPaEiSQG~LQalfEfQtm 114 (471)
T d1wyub1 40 RLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGS-CTMKYNPKLHEEAAR-LFADL-HPYQDPRTAQGALRLMWELGEY 114 (471)
T ss_dssp CCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTT-TCCCCCCHHHHHHHH-TTSSC-CTTSCGGGCHHHHHHHHHHHHH
T ss_pred CCCC--CCHHHHHHHHHHHHhCCCCccccccCCcc-ccCccCcchhhhHHH-HHhcc-CCCCCHHHHHHHHHHHHHHHHH
Confidence 5564 56778999999887766421 2231 111233344433332 22221 2232112344666777778899
Q ss_pred HHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-------CCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCCCCccC
Q 011842 148 FARLWELENNEYWGYITNCGTEGNLHGILVGREV-------FPDGILYASRESHYSVFKAARMYRMECVKVDCLISGEID 220 (476)
Q Consensus 148 la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-------~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~~g~~D 220 (476)
+++|.|++.. -.-...|..|...|+++++.. .....++.+...|..........+..++.++.+..+..|
T Consensus 115 i~eLTGMdva---NaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (471)
T d1wyub1 115 LKALTGMDAI---TLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVD 191 (471)
T ss_dssp HHHHHTCSEE---ECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBC
T ss_pred HHHHhCCCcc---ccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeeccccccccccc
Confidence 9999999842 122346666666666665431 112345566666666667777778899999988888999
Q ss_pred HHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcccccE
Q 011842 221 CADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPIGS 300 (476)
Q Consensus 221 ~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~Ds 300 (476)
.+.++.....+. ..++++.+++.-+..++.+++++++++.+. .+++|++--.......+ .....+|.
T Consensus 192 ~~~~~~~~~~~~---a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~-----~~~~~~~~~~~~~~l~~-----p~~~g~di 258 (471)
T d1wyub1 192 LEALKRELGPHV---AALMLTNPNTLGLFERRILEISRLCKEAGV-----QLYYDGANLNAIMGWAR-----PGDMGFDV 258 (471)
T ss_dssp HHHHHHHCSTTE---EEEEECSSCTTSCCCTTHHHHHHHHHHHTC-----EEEEEGGGGGGTTTTCC-----HHHHTCSE
T ss_pred chhhhhhhhccc---cceeeccCCCcccccchhhhhHHHHHhccc-----cccccccchhhhhhccc-----cCcccccc
Confidence 999888765543 367776666554444579999999999999 99999874322211000 11124789
Q ss_pred EEEcCCCCCCCC-----CCceeEEeehhhhhhhcCCc-----cc-c--CCCCC----cccCCCCChhHHHHHHHHHHhCh
Q 011842 301 VSVSGHKFVGCP-----MPCGVQITRMEHINVLSSNV-----EY-L--ASRDA----TIMGSRNGHAPIFLWYTLNRKGY 363 (476)
Q Consensus 301 i~~s~hK~l~~p-----~~~G~l~~~~~~~~~l~~~~-----~y-l--~~~~~----~~~~sr~~~~~l~~~~~l~~~g~ 363 (476)
++++.|+.++.| +++|++.+++++.+.++... .+ . .+... .-.||-.+..++..+..+..+|.
T Consensus 259 v~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~ 338 (471)
T d1wyub1 259 VHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGL 338 (471)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCc
Confidence 999999977666 66888999999877664321 00 0 01111 11244444556777788899999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC--c-HHHhh-----ceee-----cc-cCCEEEEEEc
Q 011842 364 KGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ--D-EEFVR-----RWQL-----AC-QGNIAHVVVM 428 (476)
Q Consensus 364 ~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~--~-~~~~~-----~~~l-----~~-~~~~lRv~~~ 428 (476)
+|+++..+++..+|+|+.++|++.|+....+. ..+-+++..+. + .++.+ ++.- +. ..+.+.++++
T Consensus 339 ~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vT 418 (471)
T d1wyub1 339 EGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPT 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCceeccCcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcCCCCCeEEEecC
Confidence 99999999999999999999988887654322 22334444442 2 22332 2221 11 2467889999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 011842 429 PNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 429 ~~~T~edid~~~~~l~~~~~~~ 450 (476)
..+|++|||+|+++|+++.+++
T Consensus 419 E~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 419 ETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp TTSCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998754
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.69 E-value=3.5e-15 Score=149.40 Aligned_cols=297 Identities=14% Similarity=0.122 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccE--EEcCCchhHHHHHHHHHHhhCCCcEEEecCC---CchHHHH-------HHHH
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWG--YITNCGTEGNLHGILVGREVFPDGILYASRE---SHYSVFK-------AARM 203 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g--~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~---~H~S~~~-------~~~~ 203 (476)
...++|..+.+...++||+++. +|. +-..+|+.||+.+..+... |+|.|+.-.. .|.|.-. .+.-
T Consensus 74 ~iD~iE~la~~ra~~lF~~~~~-~~~anVqp~SGs~An~av~~all~--pgD~im~~~l~~GGHlshg~~~~~~~~~~~~ 150 (470)
T d1rv3a_ 74 HIDELETLCQKRALQAYGLDPQ-CWGVNVQPYSGSPANFAVYTALVE--PHGRIMGLDLPDGGHLTHGFMTDKKKISATS 150 (470)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTT-TEEEECCCSSHHHHHHHHHHHHTC--TTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred hHHHHHHHHHHHHHHHhCCChh-hccccccccCCccHHHHHHHHhcC--CCCeEeeeccccCCcccccccccCCCccccc
Confidence 4678999999999999999853 344 3356899999999998887 9999987554 4544321 1111
Q ss_pred cCCeEEEEeCCC-CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCccccc
Q 011842 204 YRMECVKVDCLI-SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLM 282 (476)
Q Consensus 204 ~G~~v~~v~~~~-~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~ 282 (476)
...+...+++++ ++.+|.+++++...+. +|.+|++ |.+..-..-|++++.+||++.|+ +|++|.+|-.+.
T Consensus 151 ~~~~~~~y~v~~~~~~IDyd~l~~~a~~~--kPklIi~--G~S~y~r~~d~~~~reIad~vga-----~l~~D~aH~aGL 221 (470)
T d1rv3a_ 151 IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA--GTSCYSRNLDYGRLRKIADENGA-----YLMADMAHISGL 221 (470)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE--CCSSCCSCCCHHHHHHHHHHTTC-----EEEEECTTTHHH
T ss_pred ceeEeeEEEEecccCcccHHHHHHHHHhh--CcceEee--chhhccccCCHHHHHHHHhccCC-----eEEecchhhhhh
Confidence 134678888885 4899999999988754 3447776 66666667899999999999999 999999996555
Q ss_pred ccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhh---hcCC--ccc---cCCC-CCcccCCCCChhHHH
Q 011842 283 MPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINV---LSSN--VEY---LASR-DATIMGSRNGHAPIF 353 (476)
Q Consensus 283 ~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~---l~~~--~~y---l~~~-~~~~~~sr~~~~~l~ 353 (476)
+.......+++ .+|+++++.||.|.+| +.|+++++++.-.. .... .+| +... =+.++++.......+
T Consensus 222 IA~g~~~sPl~---~aDvvt~tTHKtlrGP-rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa 297 (470)
T d1rv3a_ 222 VVAGVVPSPFE---HCHVVTTTTHKTLRGC-RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAG 297 (470)
T ss_dssp HHHTSSCCGGG---TCSEEEEESSGGGCCC-SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHH
T ss_pred ccccccCChhh---eeeeeeeehhhhccCC-cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHH
Confidence 44444433343 3799999999999965 56888887642100 0000 000 0000 022345554445555
Q ss_pred HHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecC----CcHH---Hhhcee-------ecc
Q 011842 354 LWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERP----QDEE---FVRRWQ-------LAC 418 (476)
Q Consensus 354 ~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~----~~~~---~~~~~~-------l~~ 418 (476)
+..+++......+++..++..++++.|.+.|.+.|+.++... .+.++.+... ...+ .++... +|.
T Consensus 298 ~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~ 377 (470)
T d1rv3a_ 298 VAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 377 (470)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSS
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCC
Confidence 666676665567899999999999999999999999776432 2455555432 1112 222111 222
Q ss_pred c-----CCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 419 Q-----GNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ~-----~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
. .+.+|+.+ ....+++|+.++.+.|.++++
T Consensus 378 D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 378 DKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp CSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1 35799975 566789999999999988764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.68 E-value=2.9e-15 Score=149.51 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcccEE--EcCCchhHHHHHHHHHHhhCCCcEEEecCCC---chHHHH-----HHHHcCC
Q 011842 137 SRQFEVGVLDWFARLWELENNEYWGY--ITNCGTEGNLHGILVGREVFPDGILYASRES---HYSVFK-----AARMYRM 206 (476)
Q Consensus 137 ~~~le~~~~~~la~l~g~~~~~~~g~--~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~---H~S~~~-----~~~~~G~ 206 (476)
..++|..+.+...++||++.. +|++ -..+|+.||+.+..+..+ |+|.|+.-... |.|.-. .....|.
T Consensus 71 iD~iE~la~~ra~~lF~~~~a-~w~vNVqp~SGs~An~av~~all~--pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~ 147 (463)
T d2a7va1 71 VDEIELLCQRRALEAFDLDPA-QWGVNVQPYSGSPANLAVYTALLQ--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSI 147 (463)
T ss_dssp CTHHHHHHHHHHHHHTTCCTT-TEEEECCCSSHHHHHHHHHHHHCC--SCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCch-hccCCccccccHHHHHHHHHHHcC--CCceEEeeccCcCcccccccccccccccceee
Confidence 458999999999999999863 4553 456899999999988877 99998865544 544331 1222333
Q ss_pred --eEEEEeCC-CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccc
Q 011842 207 --ECVKVDCL-ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMM 283 (476)
Q Consensus 207 --~v~~v~~~-~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~ 283 (476)
+...++++ +++.+|++.+++.+.+. +|.+|++ |.|..-..-|++++.++|++.|. +|++|.+|-.+.+
T Consensus 148 ~~~~~~Y~~d~~~~~IDyd~~~~~a~~~--kPklIi~--G~S~y~r~~d~~~~reIad~vga-----~l~~D~aH~aGLI 218 (463)
T d2a7va1 148 FFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIA--GTSAYARLIDYARMREVCDEVKA-----HLLADMAHISGLV 218 (463)
T ss_dssp ------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEE--CCSSCCSCCCHHHHHHHHHHTTC-----EEEEECGGGHHHH
T ss_pred EeeeeeeeccCCCCcCcHHHHHHHHhhc--CCceEEe--cccccccccCHHHHHHHhhcccc-----eEEechhhhhHHh
Confidence 45556666 46899999999998765 3447776 66666667899999999999999 9999999965554
Q ss_pred cccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcC-----CccccCC---C-CCcccCCCCChhHHHH
Q 011842 284 PFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSS-----NVEYLAS---R-DATIMGSRNGHAPIFL 354 (476)
Q Consensus 284 ~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~-----~~~yl~~---~-~~~~~~sr~~~~~l~~ 354 (476)
....+..++ +.+|+++++.||.|.+| +.|+++++++....... ...|-.. . -+.++++.......+.
T Consensus 219 A~g~~~sP~---~~aDvvt~tTHKTlrGP-rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~ 294 (463)
T d2a7va1 219 AAKVIPSPF---KHADIVTTTTHKTLRGA-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAV 294 (463)
T ss_dssp HTTSSCCGG---GTCSEEEEESSGGGCSC-SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHH
T ss_pred hhhhhcChh---hhhhhhhchhhhhhcCC-CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHH
Confidence 444443333 33899999999999965 57888888632100000 0001000 0 0223455544445556
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeecC-CeeEEEEecCC---c-HH---Hhhcee-------ecc-
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLNE-LSSTVVFERPQ---D-EE---FVRRWQ-------LAC- 418 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~iv~f~~~~---~-~~---~~~~~~-------l~~- 418 (476)
..+++......+++..++..++|+.|.+.|.+.|+.++... .+.++.+...+ + .. .++... +|.
T Consensus 295 Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D 374 (463)
T d2a7va1 295 AVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD 374 (463)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCC
Confidence 66666554567899999999999999999999999776532 34566666421 1 11 222111 221
Q ss_pred ----cCCEEEEEE----cCCCCHHHHHHHHHHHHHHHH
Q 011842 419 ----QGNIAHVVV----MPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 419 ----~~~~lRv~~----~~~~T~edid~~~~~l~~~~~ 448 (476)
....+|+.+ .....++|+.++.+.|.+++.
T Consensus 375 ~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 375 RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 235689975 455688999999999888764
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.66 E-value=1.5e-14 Score=143.61 Aligned_cols=215 Identities=14% Similarity=0.140 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
.-...+.+.++.+-|.+. ++++++|..|+..++.+... +|+.|++++..|..... .....|+++..++..
T Consensus 63 PT~~~LE~~la~LEgg~~----a~~~sSGmaAi~~~l~~ll~--~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~ 136 (397)
T d1y4ia1 63 PTTDALEKKLAVLERGEA----GLATASGISAITTTLLTLCQ--QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG 136 (397)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCcc----ceeehHHHHHHHHHHhhccC--CCCeeeeecccccccchhhhcccCCCceEeeccCCC
Confidence 334455566788877753 78899999999988888776 99999999999876544 344569999999865
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
|++.++++|.++|+ +|.+..++|++..+.||++|+++|+++|+ +++||..++..+.. -.+
T Consensus 137 -----d~~~~~~~i~~~Tk---lv~~Esp~NP~l~v~Di~~i~~iA~~~gi-----~~vvDnT~atP~~~-------~Pl 196 (397)
T d1y4ia1 137 -----KPEEIRAAMRPETK---VVYIETPANPTLSLVDIETVAGIAHQQGA-----LLVVDNTFMSPYCQ-------QPL 196 (397)
T ss_dssp -----SHHHHHHHCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTC-------CGG
T ss_pred -----CHHHHHHhcCCCCc---EEEecCCcccceeecccHHHHHHhhcCCc-----eEEecCcccCcccC-------cch
Confidence 89999999987776 89999999999999999999999999999 99999998765442 112
Q ss_pred cccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcC-CccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 295 KKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSS-NVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 295 ~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~-~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
..++|++.-|..|++++- .-.|+++.+++.+..... ....+ .|.- ..+...|..++ |.+.+.-+++
T Consensus 197 ~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~-------~G~~--l~p~~a~l~~r--gl~TL~lRm~ 265 (397)
T d1y4ia1 197 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI-------TGGC--MSPFNAWLTLR--GVKTLGIRME 265 (397)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT-------TCCC--CCHHHHHHHHH--HHTTHHHHHH
T ss_pred hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhC-------cCCc--CCHHHHHHHHc--CcCcHHHHHH
Confidence 234999999999999742 336778888775543211 11111 1222 23567777665 4577888999
Q ss_pred HHHHHHHHHHHHHHhcCCe
Q 011842 372 KCLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~ 390 (476)
+..++|..+.+.|++.+..
T Consensus 266 ~~~~nA~~lA~~L~~hp~V 284 (397)
T d1y4ia1 266 RHCENALKIARFLEGHPSI 284 (397)
T ss_dssp HHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 9999999999999998754
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=1.2e-14 Score=144.03 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCCC
Q 011842 140 FEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCLI 215 (476)
Q Consensus 140 le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~~ 215 (476)
-...+.+.+++|-|.+. ++++++|..|+..++.+... +|+.|++++..|......+ +.+|+++..++..
T Consensus 60 T~~~LE~~la~LEg~~~----a~~~~SGmaAi~~~l~~l~~--~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~- 132 (392)
T d1gc0a_ 60 TLNLLEARMASLEGGEA----GLALASGMGAITSTLWTLLR--PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA- 132 (392)
T ss_dssp HHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred HHHHHHHHHHHHhCCcc----eeehhhHHHHHHHHHHhhcc--CCCeeecccccchhhhhhhhhhhccCCcccccCCcc-
Confidence 33445555888888753 78899999999988888765 9999999999887765544 4449999998765
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
|++.++++++++|+ +|.+.+++|++..+.||++|+++|+++|+ .++||..++..++. -.+.
T Consensus 133 ----d~~~~~~ai~~~t~---lv~~Esp~NP~l~v~Di~~i~~ia~~~g~-----~~vvDnT~atP~~~-------~Pl~ 193 (392)
T d1gc0a_ 133 ----DLQALEAAMTPATR---VIYFESPANPNMHMADIAGVAKIARKHGA-----TVVVDNTYCTPYLQ-------RPLE 193 (392)
T ss_dssp ----CHHHHHHHCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHGGGTC-----EEEEECTTTHHHHC-------CGGG
T ss_pred ----CHHHHHHhCCCCCe---EEEecccccceeeecchHHHHHHHHhcCC-----EEEEecCccCcccc-------ChHH
Confidence 89999999988876 89999999999999999999999999999 99999998765442 1112
Q ss_pred ccccEEEEcCCCCCCC--CCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 296 KPIGSVSVSGHKFVGC--PMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 296 ~~~Dsi~~s~hK~l~~--p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
-++|++.-|..||+++ -.-.|+++++++.+......... ...|+- ..+...|..++ |.+.+..++++.
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~------~~~G~~--~~p~da~ll~r--gl~TL~lRm~~~ 263 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK------DMTGAV--LSPHDAALLMR--GIKTLNLRMDRH 263 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH------HHTCCC--CCHHHHHHHHH--HHTTHHHHHHHH
T ss_pred hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHH------HccCCc--CChhhHHHHHh--ccccHHHHHHHH
Confidence 2499999999999973 23467777777765432111000 011222 23566776665 457889999999
Q ss_pred HHHHHHHHHHHHhcCCe
Q 011842 374 LRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~ 390 (476)
.+++..+.+.|++.+..
T Consensus 264 ~~nA~~lA~~L~~hp~V 280 (392)
T d1gc0a_ 264 CANAQVLAEFLARQPQV 280 (392)
T ss_dssp HHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 99999999999998643
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.64 E-value=2.1e-15 Score=148.76 Aligned_cols=292 Identities=10% Similarity=-0.016 Sum_probs=163.0
Q ss_pred chhhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH--HHHHHHcCCeEEEE
Q 011842 134 GVHSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV--FKAARMYRMECVKV 211 (476)
Q Consensus 134 ~~~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~--~~~~~~~G~~v~~v 211 (476)
.....++.+++++.++++++.+. ++.+++++|++++++.+...... .+++.+++....|++. ...++..+...+.+
T Consensus 43 s~~~~~~~~~~r~~l~~l~~~~~-~~~i~~~~gt~~~~~~~~~~~~~-~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 120 (360)
T d1w23a_ 43 SQSYEEVHEQAQNLLRELLQIPN-DYQILFLQGGASLQFTMLPMNLL-TKGTIGNYVLTGSWSEKALKEAKLLGETHIAA 120 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHHHHHHHC-CTTCEEEEEECSHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHhhhc-ccCcccceeeccchhhhhHHHHHHhhhcceee
Confidence 34567888999999999999975 45688888888887766555443 2566666655555543 34445556555555
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
........+++.++..+ +... +++.+|.+|.+.|+++|.++|+++|+ ++++|++++.+..+
T Consensus 121 ~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~tg~~~~~~~i~~~~~~~g~-----l~ivDavqs~g~~~------- 181 (360)
T d1w23a_ 121 STKANSYQSIPDFSEFQ----LNEN---DAYLHITSNNTIYGTQYQNFPEINHA-----PLIADMSSDILSRP------- 181 (360)
T ss_dssp ECGGGTSCSCCCGGGCC----CCTT---EEEEEEESEETTTTEECSSCCCCCSS-----CEEEECTTTTTSSC-------
T ss_pred ccccccccchhhhhhcc----cccc---cceeEecCCccccceeeeecccccee-----eEEeeccccccccc-------
Confidence 44322223333333222 2111 33455667999999999999999999 99999999977776
Q ss_pred CCCccc-ccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCC----CCcccCCCCChhHHHHHHHHHHh-Chhc
Q 011842 292 VSFKKP-IGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR----DATIMGSRNGHAPIFLWYTLNRK-GYKG 365 (476)
Q Consensus 292 ~~~~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~----~~~~~~sr~~~~~l~~~~~l~~~-g~~g 365 (476)
+++.+. +|+++++.||++ |.+.|+++.+....+.......+.... ......+............+... ...+
T Consensus 182 id~~~~~vd~~~~~~~k~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (360)
T d1w23a_ 182 LKVNQFGMIYAGAQKNLGP--SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGG 259 (360)
T ss_dssp CCGGGCSEEEEETTTTTSC--TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH
T ss_pred cccccccceEEeecccccc--CCcceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhh
Confidence 566554 778777777754 445666666554332221111111100 00011111111111111111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CeEee-cCC---eeEEEEecCCc---HHHhh-----ceeeccc---CCEEEEEEcC
Q 011842 366 FQKEVQKCLRNAHYLKDRLLDAG-ISAML-NEL---SSTVVFERPQD---EEFVR-----RWQLACQ---GNIAHVVVMP 429 (476)
Q Consensus 366 ~~~~~~~~~~~a~~l~~~L~~~g-~~~~~-~~~---~~iv~f~~~~~---~~~~~-----~~~l~~~---~~~lRv~~~~ 429 (476)
.....++....+........... ...+. .+. ..+++|..++. ..+.. ++.+..+ -+.+|+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~ 339 (360)
T d1w23a_ 260 AEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYN 339 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCT
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeC
Confidence 23333333334444444444432 22222 121 24788988753 22322 2222111 1358999988
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011842 430 NVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 430 ~~T~edid~~~~~l~~~~~ 448 (476)
++|.|||++|++.|++..+
T Consensus 340 ~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 340 AVPIDACIALRELMIQFKE 358 (360)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999987644
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.64 E-value=2.8e-14 Score=142.55 Aligned_cols=223 Identities=16% Similarity=0.062 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
...++|++ +++++|.+. ++.|++||.|+.+|+.++ ...+|++|+++..++.+...++...|++++.+++++
T Consensus 35 ~v~~fE~~----~a~~~g~~~----~v~~~SGt~Al~lal~~l-~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~ 105 (384)
T d1b9ha_ 35 EVNSFERE----FAAHHGAAH----ALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDA 105 (384)
T ss_dssp HHHHHHHH----HHHHTTCSE----EEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHH----HHHHHCcCe----EEEeCCHHHHHHHHHHHc-CCCCCCEEEEeccccccccccccccccccccccccc
Confidence 45566655 777888875 889999999999998765 234899999999999999999999999999999875
Q ss_pred -CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 216 -SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 216 -~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
++.+|++.+++.+.++++ .|+ ++.+.|...++++|.++|+++++ +++.|+||+.+.....+.. +
T Consensus 106 ~~~~~d~~~~~~~i~~~tk---~i~---~~~~~g~~~d~~~i~~~~~~~~i-----~lieD~a~a~ga~~~g~~~----g 170 (384)
T d1b9ha_ 106 ATYNLDPEAVAAAVTPRTK---VIM---PVHMAGLMADMDALAKISADTGV-----PLLQDAAHAHGARWQGKRV----G 170 (384)
T ss_dssp TTCCBCHHHHHHHCCTTEE---EEC---CBCGGGCCCCHHHHHHHHHHHTC-----CBCEECTTCTTCEETTEEG----G
T ss_pred cccccchhhhccccccccc---ccc---cccccccccccccchhhhhhhhh-----hhhhhhceecccccCCEec----C
Confidence 688999999999877764 443 45677899999999999999999 9999999985443222221 1
Q ss_pred ccc-ccEEEEcCCCCCCCCCCceeEEeehh-hhhh---hcC--------CccccCCCCCcccCCCCChhHHHHHHHHHHh
Q 011842 295 KKP-IGSVSVSGHKFVGCPMPCGVQITRME-HINV---LSS--------NVEYLASRDATIMGSRNGHAPIFLWYTLNRK 361 (476)
Q Consensus 295 ~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~---l~~--------~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~ 361 (476)
..+ +.++++...|.+.++- .|+++++++ +.+. +.. ...|. ....|.......+.+...+.
T Consensus 171 ~~g~~~~~Sf~~~K~i~~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~G~n~rms~l~Aaig~~-- 243 (384)
T d1b9ha_ 171 ELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYF----HKIAGSNMRLNEFSASVLRA-- 243 (384)
T ss_dssp GSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCC----CCSCCCBCBCBHHHHHHHHH--
T ss_pred cccccceecccccccccccc-cchhhhhhHHHHHHHHHHHhcCCCCcccccccc----ccccccccccccchhhhhhh--
Confidence 112 5667788899987644 567777655 3222 111 01111 11122111112233222222
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHhcCC
Q 011842 362 GYKGFQKEVQKCLRNAHYLKDRLLDAGI 389 (476)
Q Consensus 362 g~~g~~~~~~~~~~~a~~l~~~L~~~g~ 389 (476)
..+.+.+.+++.+++++++.+.|++...
T Consensus 244 qL~~ld~~~~~R~~~~~~y~~~L~~~~~ 271 (384)
T d1b9ha_ 244 QLARLDEQIAVRDERWTLLSRLLGAIDG 271 (384)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hhhhcccchhhhhhhhhhhhhhhhcccc
Confidence 2366788888889999999999998654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=5e-14 Score=139.37 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~~~ 216 (476)
...+.+.++.|-|.+. .+.+++|..|+..++.+... +++.|++++..|.... +.....|.++..+...
T Consensus 52 ~~~le~~la~LEgg~~----a~~~sSGMaAi~~~l~~l~~--~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~-- 123 (384)
T d1cs1a_ 52 RDVVQRALAELEGGAG----AVLTNTGMSAIHLVTTVFLK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-- 123 (384)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--
T ss_pred HHHHHHHHHHHhCCCc----eEEecChHHHHHHHHhhccc--ccceecccccccchhhhhhhhhhcccccccccccCC--
Confidence 3344555778888653 78999999999888887765 9999999998886653 3344457778777654
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|.+.+++++.++++ +|.+.+++|++..+.||++|+++|+++|+ .++||..++..++. -.+..
T Consensus 124 ---d~~~~~~~~~~~t~---~v~~EspsNP~l~v~Di~~i~~ia~~~g~-----~~vVDNT~atP~~~-------~Pl~~ 185 (384)
T d1cs1a_ 124 ---DEQALRAALAEKPK---LVLVESPSNPLLRVVDIAKICHLAREVGA-----VSVVDNTFLSPALQ-------NPLAL 185 (384)
T ss_dssp ---CHHHHHHHHHTCCS---EEEEECSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTC-------CGGGG
T ss_pred ---CHHHHHhhcccccc---EEEEeccccccceeccHHHHhhhhhhcCc-----EEEEeccccCcccc-------ccccc
Confidence 88999999999987 89999999999999999999999999999 99999998655432 11223
Q ss_pred cccEEEEcCCCCCCCC--CCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCP--MPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|++.-|..||+++- .-.|+++.+++. .+.+......+ |.. ..+...|..++ |.+.+.-++++.
T Consensus 186 GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~--------G~~--~~p~~a~ll~r--gL~TL~lRm~~~ 253 (384)
T d1cs1a_ 186 GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--------GVT--GGAFDSYLLLR--GLRTLVPRMELA 253 (384)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH--------TCB--CCHHHHHHHHH--HHTTHHHHHHHH
T ss_pred CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhh--------hhc--cccccHHHHhh--ccchhHHHHHHH
Confidence 4999999999999742 235667776653 23221111111 111 22566776665 557789999999
Q ss_pred HHHHHHHHHHHHhcCCe
Q 011842 374 LRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~~ 390 (476)
.++|..+.+.|++.+..
T Consensus 254 ~~nA~~lA~~L~~hp~V 270 (384)
T d1cs1a_ 254 QRNAQAIVKYLQTQPLV 270 (384)
T ss_dssp HHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHhcccCCce
Confidence 99999999999998754
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.61 E-value=8.6e-14 Score=138.19 Aligned_cols=286 Identities=12% Similarity=-0.014 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC-CCcEEEecCCCchHHHHHHHHcCCeEEEEeCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF-PDGILYASRESHYSVFKAARMYRMECVKVDCL 214 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~-p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~ 214 (476)
...++|++ +++++|.+. ++++++||.|+.+++++..... ++++|+++..++.+...++...|++++.++++
T Consensus 32 ~v~~fE~~----~~~~~g~k~----ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~ 103 (371)
T d2fnua1 32 RSLLFEEA----LCEFLGVKH----ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIK 103 (371)
T ss_dssp HHHHHHHH----HHHHHTCSE----EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBC
T ss_pred HHHHHHHH----HHHHHCcCe----EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeeccCccccccccc
Confidence 34556654 777788874 7899999999999988765422 24589999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSF 294 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~ 294 (476)
++..++.+++++.+.++++ .|++++ ..|...++++|.++|+++|+ +++.|+||+.+.....+.. +
T Consensus 104 ~~~~~~~~~~~~~~~~~t~---avi~vh---~~G~~~~~~~i~~~~~~~~i-----~lIEDaaqa~Ga~~~~~~~----G 168 (371)
T d2fnua1 104 NDGNIDELALEKLINERTK---AIVSVD---YAGKSVEVESVQKLCKKHSL-----SFLSDSSHALGSEYQNKKV----G 168 (371)
T ss_dssp TTSSBCGGGSGGGCCTTEE---EEEEEC---GGGCCCCHHHHHHHHHHHTC-----EEEEECTTCTTCEETTEET----T
T ss_pred ccccccchhhhhhccchhh---cccccc---ccccccccccccccccccch-----hhccchhhccCceeccccC----C
Confidence 8888888888777665543 565554 56999999999999999999 9999999986543322221 2
Q ss_pred ccc-ccEEEEcCCCCCCCCCCceeEEeehh-hhhhhcCCccc----cCCC--CCccc--CCCCChhHHHHHHHHHHhChh
Q 011842 295 KKP-IGSVSVSGHKFVGCPMPCGVQITRME-HINVLSSNVEY----LASR--DATIM--GSRNGHAPIFLWYTLNRKGYK 364 (476)
Q Consensus 295 ~~~-~Dsi~~s~hK~l~~p~~~G~l~~~~~-~~~~l~~~~~y----l~~~--~~~~~--~sr~~~~~l~~~~~l~~~g~~ 364 (476)
..+ +.++++...|.+.++ +.|+++++++ +.+.+.....+ .... ..... ..|. .-+.....+.. .+
T Consensus 169 ~~g~~~~~Sf~~~K~l~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~--sel~Aaigl~q--L~ 243 (371)
T d2fnua1 169 GFALASVFSFHAIKPITTA-EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRL--NEIQSALGLSQ--LK 243 (371)
T ss_dssp SSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCC--CHHHHHHHHHH--HT
T ss_pred ccccccccccccccccccc-cceEEEeechhhhhhcccccccccccccccccccccccccccc--cchhhhhhhhh--hh
Confidence 222 567777788999875 4677777765 33322110000 0000 00011 1222 12332223333 36
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEeecC--C---e-e--EEEEecCC--c-HHHhhc-----eee-----c------
Q 011842 365 GFQKEVQKCLRNAHYLKDRLLDAGISAMLNE--L---S-S--TVVFERPQ--D-EEFVRR-----WQL-----A------ 417 (476)
Q Consensus 365 g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~~--~---~-~--iv~f~~~~--~-~~~~~~-----~~l-----~------ 417 (476)
.+.+.+++..++++++.+.|+..+.....++ . + . .+.+.... . +++.+. ... +
T Consensus 244 ~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~ 323 (371)
T d2fnua1 244 KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQL 323 (371)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHH
T ss_pred hccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccchhHHHHHHHHHHHCCCCcceeCcccccCHH
Confidence 6788888888999999999988766544321 1 1 1 22222111 1 222211 110 1
Q ss_pred -----cc----------CCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 418 -----CQ----------GNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 418 -----~~----------~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.. ...+.+=+++..|.+||+++++.|.+..+.
T Consensus 324 ~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 324 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 00 123444468889999999999999887764
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.60 E-value=3.8e-14 Score=140.20 Aligned_cols=210 Identities=14% Similarity=0.128 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHH----cCCeEEEEeCCCC
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARM----YRMECVKVDCLIS 216 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~----~G~~v~~v~~~~~ 216 (476)
.+.+.+.++.|-|.+. ++.+++|..|+ .++..... +|+.|+++..-|......++. .|+++..+...
T Consensus 51 ~~~le~~la~LE~~~~----a~~fsSGMaAi-sall~ll~--~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-- 121 (380)
T d1ibja_ 51 RDALESLLAKLDKADR----AFCFTSGMAAL-SAVTHLIK--NGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-- 121 (380)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHH-HHHHTTSC--TTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT--
T ss_pred HHHHHHHHHHHcCCce----EEehhhHHHHH-HHHHHhhC--CCCEEEEEecccccccchhhhhhccccccccccCcc--
Confidence 3455556788887753 78888888776 45555443 899999999998776655543 48888888765
Q ss_pred CccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCcc
Q 011842 217 GEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKK 296 (476)
Q Consensus 217 g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~ 296 (476)
|++.+++++.++++ +|.+..++|++..+.||++|+++|+++|+ +++||..++..+.. -.+.-
T Consensus 122 ---~~~~~~~ai~~~t~---li~~EtpsNP~l~v~Di~~i~~iA~~~g~-----~~vVDnT~atP~~~-------~Pl~~ 183 (380)
T d1ibja_ 122 ---KLDEVAAAIGPQTK---LVWLESPTNPRQQISDIRKISEMAHAQGA-----LVLVDNSIMSPVLS-------RPLEL 183 (380)
T ss_dssp ---SHHHHHHHCCSSEE---EEEECSSCTTTCCCCCHHHHHHHHHTTTC-----EEEEECTTTCTTTC-------CGGGT
T ss_pred ---hHHHHHHHhccCcc---EEEeccccccccccccHHHHHHHHHHcCC-----eEEeeccccccccc-------ccccc
Confidence 88999999877765 89999999999999999999999999999 99999998765442 11122
Q ss_pred cccEEEEcCCCCCCCC--CCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHH
Q 011842 297 PIGSVSVSGHKFVGCP--MPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKC 373 (476)
Q Consensus 297 ~~Dsi~~s~hK~l~~p--~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~ 373 (476)
++|++.-|..|++++- .-.|+++.+++ +.+.+...... .|.. ..+...|..++ |.+.+..++++.
T Consensus 184 GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~--------~G~~--l~p~~a~ll~r--gl~Tl~lRm~~~ 251 (380)
T d1ibja_ 184 GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS--------EGSG--LAPFDCWLCLR--GIKTMALRIEKQ 251 (380)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH--------TTCB--CCHHHHHHHHH--HHTTHHHHHHHH
T ss_pred CCCEEEecccceeccccCccccccccchhhHHHHHHhhccc--------cCCc--CCHHHHHHHHh--cchhhhhhHHHH
Confidence 4999999999999742 23566667755 33333211111 1222 23566676666 457889999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 011842 374 LRNAHYLKDRLLDAGI 389 (476)
Q Consensus 374 ~~~a~~l~~~L~~~g~ 389 (476)
.+++..+.+.|++.+.
T Consensus 252 ~~nA~~lA~~L~~hp~ 267 (380)
T d1ibja_ 252 QENARKIAMYLSSHPR 267 (380)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.60 E-value=1.2e-13 Score=137.18 Aligned_cols=225 Identities=18% Similarity=0.112 Sum_probs=144.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHHHHcCCeEEEEeCCC
Q 011842 136 HSRQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDCLI 215 (476)
Q Consensus 136 ~~~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v~~~~ 215 (476)
...++|++ +++++|... ++++++||.|+.+|++++. ..+|++|+++..++.+...++..+|++++.+++++
T Consensus 22 ~~~~fE~~----~~~~~~~~~----~~~~~SgT~Al~lal~~l~-~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~ 92 (374)
T d1o69a_ 22 FVNRFEQS----VKDYSKSEN----ALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDE 92 (374)
T ss_dssp HHHHHHHH----HHHHHCCSE----EEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHH----HHHHHCcCe----EEEeCCHHHHHHHHHHHcC-CCCcCEEEeCCcchHhhHHHHhhccceeEeccccc
Confidence 44566655 667788864 8999999999999998753 34899999999999999999999999999999987
Q ss_pred CCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCCCc
Q 011842 216 SGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFK 295 (476)
Q Consensus 216 ~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~ 295 (476)
+...+....+......+.++.+|++++. .|...++++|.++|+++|+ +|+.|+||+.+..-..+.. +.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i-----~vIED~a~a~g~~~~~~~~----G~ 160 (374)
T d1o69a_ 93 TYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDI-----VLIEDAAEALGSFYKNKAL----GT 160 (374)
T ss_dssp TSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTC-----EEEEECTTCTTCEETTEET----TS
T ss_pred ccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCc-----chhhhhhhhhcceECCeec----CC
Confidence 6443333333333332222336666554 4889999999999999999 9999999985432222211 11
Q ss_pred ccccE--EEEcCCCCCCCCCCceeEEeehh-hhhhh---cCCc-cccCCCCCcccC--CCCChhHHHHHHHHHHhChhcH
Q 011842 296 KPIGS--VSVSGHKFVGCPMPCGVQITRME-HINVL---SSNV-EYLASRDATIMG--SRNGHAPIFLWYTLNRKGYKGF 366 (476)
Q Consensus 296 ~~~Ds--i~~s~hK~l~~p~~~G~l~~~~~-~~~~l---~~~~-~yl~~~~~~~~~--sr~~~~~l~~~~~l~~~g~~g~ 366 (476)
..|+ +++...|.+.++ +.|+++++++ +.+.+ .... .+.........| .|. .-+ .+++.....+.+
T Consensus 161 -~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm--~ei--~Aaig~~qL~~l 234 (374)
T d1o69a_ 161 -FGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRL--SNV--LGAIGVAQMEVL 234 (374)
T ss_dssp -SSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBC--CHH--HHHHHHHHHTTH
T ss_pred -CCceEEEeccCccccccc-cceeehhhhHHHHHhhccccccccccccccccccCCccccc--cch--hhhhhHHHHhhh
Confidence 1354 445555999875 4577777765 33322 1111 110000000111 221 122 223333334667
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 011842 367 QKEVQKCLRNAHYLKDRLLDA 387 (476)
Q Consensus 367 ~~~~~~~~~~a~~l~~~L~~~ 387 (476)
.+.+++..++++++.+.|.+.
T Consensus 235 ~~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 235 EQRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcchhHHHHHHHHhhcccc
Confidence 888888888999999999764
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.57 E-value=7.4e-13 Score=131.31 Aligned_cols=214 Identities=14% Similarity=0.090 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHH----HHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKA----ARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~----~~~~G~~v~~v~~~ 214 (476)
.-...+.+.++.|-|.+. .+++++|..|+..++.+... +|+.|+++..-|...... .+.+|+++..++..
T Consensus 67 Pt~~~LE~~la~LEgg~~----a~~~sSGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~ 140 (398)
T d1qgna_ 67 PTTVVLEEKISALEGAES----TLLMASGMCASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 140 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHSC--SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred hHHHHHHHHHHHHhCCce----EEEecCcchHHHHHHhhccc--ccccccccccccchhhhhhccccccccccccccccc
Confidence 344455556788877653 78999999999988887765 899999999888765443 44558888888643
Q ss_pred CCCccCHHHHHH-HHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKA-KLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~-~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
|.+..++ .+.++++ +|.+.+++|++..+.||++|+++|+++|+ +++||..++..+.. -.
T Consensus 141 -----~~~~~~~~~~~~~t~---~v~~EspsNP~l~v~Di~~ia~ia~~~g~-----~~vVDnT~atP~~~-------~P 200 (398)
T d1qgna_ 141 -----DVGALELALNQKKVN---LFFTESPTNPFLRCVDIELVSKLCHEKGA-----LVCIDGTFATPLNQ-------KA 200 (398)
T ss_dssp -----CHHHHHHHHHHSCEE---EEEEESSCTTTCCCCCHHHHHHHHHHTTC-----EEEEECTTTCTTTC-------CT
T ss_pred -----chhhhhhhhccccce---EEEccCccccccccchHHHHHHHHhhcCC-----EEEecceeeccccC-------Cc
Confidence 4444444 4555664 88899999999999999999999999999 99999998765432 11
Q ss_pred CcccccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
+..++|++.-|..|++++-- -.|++..+.++...+...... .|.- ..+...|..++ |.+.+.-+++
T Consensus 201 l~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~--------~G~~--l~p~~a~ll~r--gl~TL~lRm~ 268 (398)
T d1qgna_ 201 LALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI--------LGGA--LNPNAAYLIIR--GMKTLHLRVQ 268 (398)
T ss_dssp TTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH--------HCCC--CCHHHHHHHHH--HGGGHHHHHH
T ss_pred hhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhccc--------CCCc--CCHHHHHHHHh--cchHHHHHHH
Confidence 22349999999999998532 255565555554433211111 1221 23566776665 4578899999
Q ss_pred HHHHHHHHHHHHHHhcCCe
Q 011842 372 KCLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~ 390 (476)
+..++|..+.+.|++.+..
T Consensus 269 ~~~~nA~~lA~~L~~hp~V 287 (398)
T d1qgna_ 269 QQNSTALRMAEILEAHPKV 287 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHHHHHHHHHHhCCCe
Confidence 9999999999999998764
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.56 E-value=3.1e-13 Score=136.65 Aligned_cols=282 Identities=15% Similarity=0.075 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH--------HHHHcCC----
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--------AARMYRM---- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~--------~~~~~G~---- 206 (476)
.....+.+.+.++.+.. ....|+++|++||-.|+..+|....+..|+.-+.+|..... .....+.
T Consensus 92 ~~~~~la~~~~~~~~~~---~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~ 168 (427)
T d2gsaa_ 92 ALENVLAEMVNDAVPSI---EMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP 168 (427)
T ss_dssp HHHHHHHHHHHHHSTTC---SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCS
T ss_pred hHHHHHHHHHHhhCCcc---ccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCC
Confidence 44555666777766543 23789999999999999999875455566655444432110 0111111
Q ss_pred --------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEE
Q 011842 207 --------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHC 274 (476)
Q Consensus 207 --------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhv 274 (476)
+...++.+ |++.|++.+.+.......|++.-.....|.+.| +++|.++|++||+ ++++
T Consensus 169 ~~~~~~~~~~~~~~~~-----~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~-----llI~ 238 (427)
T d2gsaa_ 169 GVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDA-----LLVF 238 (427)
T ss_dssp SSCHHHHTTEEEECTT-----CHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTC-----EEEE
T ss_pred CCcccCccceeccCcc-----hHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhce-----eeee
Confidence 23334433 899999999887666667777654666788877 9999999999999 9999
Q ss_pred ecCcccccccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHH
Q 011842 275 DGALFGLMMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF 353 (476)
Q Consensus 275 D~a~~g~~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~ 353 (476)
|+++.|+-. ..... ..++. ..|.++++ |.++.+...|++++++++.+.+.....+..+ .|+. ..++.
T Consensus 239 DEv~tG~r~-g~~~~~~~~gi--~PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~~~~~~~~~--~T~~-----gnpla 306 (427)
T d2gsaa_ 239 DEVMTGFRI-AYGGVQEKFGV--TPDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAGPMYQA--GTLS-----GNPLA 306 (427)
T ss_dssp ECTTTBTTT-BTTCHHHHTTC--CCSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTSSBCCC--CTTT-----TCHHH
T ss_pred cccccccee-cccchHHhcCC--CHHHHhhh--hccCCCcceeeeeehHHHHHHhcccCCCcCC--CCCC-----CCchh
Confidence 999976521 11000 01111 26888877 7888788899999999887665432222111 1222 22344
Q ss_pred HHHHHH---HhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEeecCCeeE--EEEec-C-C--------cHHH----
Q 011842 354 LWYTLN---RKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAMLNELSST--VVFER-P-Q--------DEEF---- 410 (476)
Q Consensus 354 ~~~~l~---~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~i--v~f~~-~-~--------~~~~---- 410 (476)
..++++ .+..+. ..++..++.++|.+.|++ .+........... +.|.. + . +.+.
T Consensus 307 ~AAala~Le~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~ 383 (427)
T d2gsaa_ 307 MTAGIKTLELLRQPG---TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRF 383 (427)
T ss_dssp HHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHH
T ss_pred hHHHHHhhHHhhhhh---HHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHH
Confidence 444444 443333 445555666666666644 4433222111122 22211 1 0 1111
Q ss_pred -----hhceeecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 411 -----VRRWQLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 411 -----~~~~~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+++.+...+. .++.++..+|++|||.++++|+++.++
T Consensus 384 ~~~ll~~Gv~l~p~~~-~~~~~~l~~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 384 HRGMLEQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCEEECCCCC-cceeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 12222322221 123456778999999999999998754
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.53 E-value=6e-14 Score=141.48 Aligned_cols=272 Identities=10% Similarity=-0.031 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHh------hCCCcEEEecCCCchHHHHHHHHcCCeEEEE
Q 011842 138 RQFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGRE------VFPDGILYASRESHYSVFKAARMYRMECVKV 211 (476)
Q Consensus 138 ~~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~------~~p~~~Vl~s~~~H~S~~~~~~~~G~~v~~v 211 (476)
.+|++++++.....-+...+...+++++|+|+++..++.+... ..|++.|+++.+.|..+...++++|.+...+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~ 182 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW 182 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCcc
Confidence 5888888886654444433444599999999999999888742 2388999999999999999999998876655
Q ss_pred eCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcccccccccccCCC
Q 011842 212 DCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAPK 291 (476)
Q Consensus 212 ~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~ 291 (476)
+. |.+.++++++++ +.++++++|+||||.+.. +-.++. +++.|++|.+..+..
T Consensus 183 ~~------D~~~~~~~~~~~---~~ii~l~sPnNPtG~l~~-------~v~~~~-----~~I~DEaY~~~~f~~------ 235 (425)
T d2hoxa1 183 AG------NAANYVNVSNPE---QYIEMVTSPNNPEGLLRH-------AVIKGC-----KSIYDMVYYWPHYTP------ 235 (425)
T ss_dssp EE------EGGGGTTCSCGG---GEEEEEESSCTTTCCCCC-------CSSTTC-----EEEEECTTCSTTTSC------
T ss_pred CC------CHHHHHhhCCCC---ceEEEEECCCCCCcchhh-------hhhhCC-----EEEEeccccCccccc------
Confidence 54 566666555444 458999999999998732 122566 999999996432211
Q ss_pred CCCcccccEEEEcCCCCCC-CCCCceeEEeehhh-hhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHh--------
Q 011842 292 VSFKKPIGSVSVSGHKFVG-CPMPCGVQITRMEH-INVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRK-------- 361 (476)
Q Consensus 292 ~~~~~~~Dsi~~s~hK~l~-~p~~~G~l~~~~~~-~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~-------- 361 (476)
+.....-+++..++.|.++ +++++||++++++. .+.+....++.. +..+ .+.+.++++.+
T Consensus 236 ~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~-----~~vs-----~~~Q~aa~~aL~~~~~~~~ 305 (425)
T d2hoxa1 236 IKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNT-----EGTP-----RETQLRSLKVLKEVVAMVK 305 (425)
T ss_dssp CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHT-----SSCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCc-----ccCC-----HHHHHHHHHHhhccHHHHH
Confidence 1111113566677788755 89999999888764 344432222211 1111 22222222222
Q ss_pred -----ChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CCe--------------eEEEEecCCc-----HHHhh--ce
Q 011842 362 -----GYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-ELS--------------STVVFERPQD-----EEFVR--RW 414 (476)
Q Consensus 362 -----g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~~--------------~iv~f~~~~~-----~~~~~--~~ 414 (476)
..+-++...+++.++.+++.+.|++.+.+.+.. +.. ....++...+ .++++ +.
T Consensus 306 ~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI 385 (425)
T d2hoxa1 306 TQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRI 385 (425)
T ss_dssp HHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCE
Confidence 123355566777778888999999887654422 111 1222222211 11222 22
Q ss_pred ee-c-----ccCCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Q 011842 415 QL-A-----CQGNIAHVVVMPNVTIDKLDDFLNELIENRS 448 (476)
Q Consensus 415 ~l-~-----~~~~~lRv~~~~~~T~edid~~~~~l~~~~~ 448 (476)
.+ + ...+++|+++. .++|+++++++.|+++.+
T Consensus 386 ~v~pGs~FG~~~~yvRisl~--~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 386 NTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp ECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred EEEechhcCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 22 1 23478998874 688999999999988764
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.53 E-value=1.4e-12 Score=129.52 Aligned_cols=273 Identities=13% Similarity=0.135 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHH----HHHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~----~~~~~~G~~v~~v~~~ 214 (476)
.-...+.+.++.|-|.+. .+.+++|..|+..++.+... +++.|++++..|.... +.....|+++..++..
T Consensus 59 PT~~~le~~la~LEg~~~----a~~~sSGmaAi~~~~l~l~~--~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~ 132 (394)
T d1e5ea_ 59 PTVSNLEGKIAFLEKTEA----CVATSSGMGAIAATVLTILK--AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 132 (394)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHhCCcc----eeeeccchHHHHHHHHhhcc--cccccccccceeehhhHhHHHHhhccceeeeccCCC
Confidence 334445555788888753 78889999999888877765 9999999998886543 3455669999999876
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHH-hCCCCCceEEEEecCcccccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEE-SGFTQDRFYIHCDGALFGLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~-~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~ 293 (476)
|++.++++|+++++ +|.+..++|++..+.|++++++++++ +|+ .++||..++..+.. -.
T Consensus 133 -----d~~~~~~~i~~~t~---lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~-----~vvvDnT~atP~~~-------~P 192 (394)
T d1e5ea_ 133 -----IPGEVKKHMKPNTK---IVYFETPANPTLKIIDMERVCKDAHSQEGV-----LVIADNTFCSPMIT-------NP 192 (394)
T ss_dssp -----STTHHHHHCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHHTSTTC-----EEEEECTTTCTTTC-------CG
T ss_pred -----CHHHHHHhhccccc---EEEEeccCCcceeeehhhhhhhccccccCe-----EEEecCcccCcccC-------Cc
Confidence 77899999988876 89999999999999999999987764 688 99999998765442 11
Q ss_pred CcccccEEEEcCCCCCCCC--CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHH
Q 011842 294 FKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQ 371 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~ 371 (476)
+.-++|++.-|..||+++- .-.|+++.+++........ ++ ....|+. ..+...|..++ |.+.+.-+++
T Consensus 193 l~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~--~~----~~~~G~~--lsp~~a~ll~r--gl~TL~lRm~ 262 (394)
T d1e5ea_ 193 VDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV--GI----KDITGSV--ISPHDAWLITR--GLSTLNIRMK 262 (394)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT--CC----CCCCCCC--CCHHHHHHHHH--HHTTHHHHHH
T ss_pred hhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH--HH----HHhhCCC--CChHHHHHHHh--hchhHHHHHH
Confidence 1224899999999999742 3367777777654322110 10 0112222 23566676555 4578899999
Q ss_pred HHHHHHHHHHHHHHhcCCeE-eecC-----------------CeeEEEEecCCcH----HHhhceee-------------
Q 011842 372 KCLRNAHYLKDRLLDAGISA-MLNE-----------------LSSTVVFERPQDE----EFVRRWQL------------- 416 (476)
Q Consensus 372 ~~~~~a~~l~~~L~~~g~~~-~~~~-----------------~~~iv~f~~~~~~----~~~~~~~l------------- 416 (476)
+..++|..+.+.|++.+... +..| ...+++|....+. .+.+.+.+
T Consensus 263 r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSL 342 (394)
T d1e5ea_ 263 AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESL 342 (394)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCE
T ss_pred HHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccce
Confidence 99999999999999987642 3222 1346777654432 24444332
Q ss_pred ---cc-----------------cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 417 ---AC-----------------QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 417 ---~~-----------------~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
+. ..+.+|+++. -||+|.++++|+++.+.+.
T Consensus 343 i~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG----lEd~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 343 IQHPASMTHAVVPKEEREAAGITDGMIRLSVG----IEDADELIADFKQGLDALL 393 (394)
T ss_dssp EECGGGTTTTTSCHHHHHHTTCCTTEEEEECC----SSCHHHHHHHHHHHHHHHH
T ss_pred eECccccccccCCHHHHHhcCCCcCEEEEEec----cCCHHHHHHHHHHHHHHhh
Confidence 00 0247898887 4677777777777776654
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.50 E-value=1.6e-12 Score=126.36 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=154.9
Q ss_pred HHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHH----HHHHHHcCCeEEEEeCCCCCcc
Q 011842 144 VLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSV----FKAARMYRMECVKVDCLISGEI 219 (476)
Q Consensus 144 ~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~----~~~~~~~G~~v~~v~~~~~g~~ 219 (476)
+.+.++.|-|.+. ++.+++|..|+..++++... ||+.|+++..-|... .+..+.+|+++..++..
T Consensus 3 LE~~la~Leg~~~----a~~~sSGMaAi~~~l~~ll~--~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~----- 71 (331)
T d1pffa_ 3 LEGKIAKLEHAEA----CAATASGMGAIAASVWTFLK--AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----- 71 (331)
T ss_dssp HHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred HHHHHHHHhCCCe----EEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----
Confidence 3445777777653 78899999999888887765 999999999888653 34456679999999876
Q ss_pred CHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHH-HHhCCCCCceEEEEecCcccccccccccCCCCCCcccc
Q 011842 220 DCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTL-EESGFTQDRFYIHCDGALFGLMMPFVKKAPKVSFKKPI 298 (476)
Q Consensus 220 D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia-~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~~~~~~~~~ 298 (476)
|++.+++++.++++ +|.+..++|++..+.|++++++++ +++|+ .++||..++..+... ...-++
T Consensus 72 d~~~~~~~i~~~t~---~i~~Es~~np~~~v~d~~~~~~~~a~~~~~-----~~vVDnT~atp~~~~-------pl~~Ga 136 (331)
T d1pffa_ 72 VPGNIEKHLKPNTR---IVYFETPANPTLKVIDIEDAVKQARKQKDI-----LVIVDNTFASPILTN-------PLDLGV 136 (331)
T ss_dssp STTHHHHTCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHTTSSSC-----EEEEECTTTHHHHCC-------GGGGTC
T ss_pred chhhHhhhcccccc---eeeeecccccccccccchhhhhhhhcccCc-----eEEeecccccccccc-------ccccCC
Confidence 78899999877765 888889999999999999999985 67899 999999987654320 111238
Q ss_pred cEEEEcCCCCCCCC--CCceeEEeehhhhhhh-cCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHH
Q 011842 299 GSVSVSGHKFVGCP--MPCGVQITRMEHINVL-SSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLR 375 (476)
Q Consensus 299 Dsi~~s~hK~l~~p--~~~G~l~~~~~~~~~l-~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~ 375 (476)
|++.-|..||+++- .-.|+++.+++..... ...... ..|+. ..+...|..++ |.+.+..++++..+
T Consensus 137 DiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~-------~~G~~--l~p~~a~ll~r--gl~Tl~~Rm~~~~~ 205 (331)
T d1pffa_ 137 DIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD-------ITGAI--ISPHDAWLITR--GTLTLDMRVKRAAE 205 (331)
T ss_dssp SEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCC-------CCCCC--CCHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CEEEecchhhcCCCCccccccccccccchhhhhhhhhhh-------ccCCC--CCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 99999999999742 3357777776543221 111111 12222 23566777665 45778999999999
Q ss_pred HHHHHHHHHHhcCCe
Q 011842 376 NAHYLKDRLLDAGIS 390 (476)
Q Consensus 376 ~a~~l~~~L~~~g~~ 390 (476)
++..+.+.|++.+..
T Consensus 206 nA~~lA~~L~~hp~V 220 (331)
T d1pffa_ 206 NAQKVAEFLHEHKAV 220 (331)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhhCCcE
Confidence 999999999998653
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.8e-12 Score=125.23 Aligned_cols=278 Identities=12% Similarity=0.037 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh---------CCCcEEEecCCCchHHHHHHHHc-------C
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV---------FPDGILYASRESHYSVFKAARMY-------R 205 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~---------~p~~~Vl~s~~~H~S~~~~~~~~-------G 205 (476)
..+.+.+.++.+.+. .+++++||+|+..|+.++|.. .+...+......|.....+.... +
T Consensus 86 ~~~~~~~~~~~~~~~----v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~ 161 (404)
T d2byla1 86 GEYEEYITKLFNYHK----VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 161 (404)
T ss_dssp HHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred HHHHHhhhhcccccc----cccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccC
Confidence 345566777777753 789999999999999999853 12234445554554332222211 1
Q ss_pred C-----eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEec
Q 011842 206 M-----ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDG 276 (476)
Q Consensus 206 ~-----~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~ 276 (476)
. .+..+|.+ |+++|++.+... ....|++.-.....|.+.| +++|.++|++||+ ++++|+
T Consensus 162 ~~p~~~~~~~~p~~-----d~~~l~~~l~~~--~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~-----llI~DE 229 (404)
T d2byla1 162 FGPFMPGFDIIPYN-----DLPALERALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV-----LFIADE 229 (404)
T ss_dssp SCSCCTTEEEECTT-----CHHHHHHHHTST--TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC-----EEEEEC
T ss_pred CCCCCCCeeEeccc-----CHHHHHHhcCCC--CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCe-----EEEeec
Confidence 1 35566665 899999999653 2345555433555676655 9999999999999 999999
Q ss_pred CcccccccccccCC-CCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 277 ALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 277 a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
++.|+.-...-... .+.+ ..|+++++ |.++.+ .+.|.+++++++.+.+... .. ..|+.+.. ....+.
T Consensus 230 V~tGfgR~G~~~a~~~~gv--~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~--~~---~~T~~gnp--l~~aaa 298 (404)
T d2byla1 230 IQTGLARTGRWLAVDYENV--RPDIVLLG--KALSGGLYPVSAVLCDDDIMLTIKPG--EH---FSTYGGNP--LGCRVA 298 (404)
T ss_dssp TTTTTTTTSSSSGGGGGTC--CCSEEEEC--GGGGTTSSCCEEEEECHHHHTTSCTT--SS---CCSSTTCH--HHHHHH
T ss_pred cccccccccccchhhhcCC--CCCEEEEC--chhhCCCccceeeeechhhhhccCCC--CC---CcCCCcCH--HHHHHH
Confidence 99764221111100 0111 15888765 888877 6899999998876655321 11 11223221 122223
Q ss_pred HHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec-CC-eeE--EEEecCCc---HHH-----hhceee-cccCC
Q 011842 355 WYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN-EL-SST--VVFERPQD---EEF-----VRRWQL-ACQGN 421 (476)
Q Consensus 355 ~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~-~~-~~i--v~f~~~~~---~~~-----~~~~~l-~~~~~ 421 (476)
.+.|+.+..+ +..++..++.++|.+.|++..-..+.. .. ..+ +.|..+.+ ..+ .+++.+ +..++
T Consensus 299 ~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~ 375 (404)
T d2byla1 299 IAALEVLEEE---NLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGD 375 (404)
T ss_dssp HHHHHHHHHT---THHHHHHHHHHHHHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETT
T ss_pred HHHHHHHHhc---CchhhhhHhhHHHHHHHHhhccccceeeeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecCCCC
Confidence 3444444333 355666677888999888753211111 11 112 22322221 112 223333 34567
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 422 IAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 422 ~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+|++....+|++|||.+++.|+++++.
T Consensus 376 ~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 376 IIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 8888877778999999999999988753
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2e-12 Score=128.12 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~ 214 (476)
.-...+.+.++.|-|.+. ++.+++|..|+..++.+... +|+.|+++..-|......+ ...|+++..+...
T Consensus 58 Pt~~~le~~la~LEg~~~----a~~~~SGMaAi~~~l~~l~~--~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~ 131 (391)
T d1cl1a_ 58 LTHFSLQQAMCELEGGAG----CVLFPCGAAAVANSILAFIE--QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 131 (391)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred hhHHHHHHHHHHHhCCcc----EEEeccccceeeehhhcccC--CCCeEEEecccccchhhhhhhcccccccccccccCc
Confidence 444455666888888753 88899999999988888765 8999999999987755443 3458888888764
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHh--CCCCCceEEEEecCcccccccccccCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEES--GFTQDRFYIHCDGALFGLMMPFVKKAPKV 292 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~--g~~~~~~~lhvD~a~~g~~~~~~~~~~~~ 292 (476)
|.+++++++.++++ +|.+..++|++..+.||++|+++|+++ |+ .++||..++..+.. -
T Consensus 132 -----d~~~~~~~i~~~t~---~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~-----~~vVDnT~atP~~~-------~ 191 (391)
T d1cl1a_ 132 -----IGADIVKHLQPNTK---IVFLESPGSITMEVHDVPAIVAAVRSVVPDA-----IIMIDNTWAAGVLF-------K 191 (391)
T ss_dssp -----CGGGGGGTCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHHHHCTTC-----EEEEECTTTTTTSS-------C
T ss_pred -----cccccccccccccc---eeeecccCcccccccccHHHHHHHHhccCCc-----EEEEeccccchhhh-------c
Confidence 67788888777665 888999999999999999999999875 89 99999998765432 0
Q ss_pred CCcccccEEEEcCCCCCCCCC--CceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHH
Q 011842 293 SFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEV 370 (476)
Q Consensus 293 ~~~~~~Dsi~~s~hK~l~~p~--~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~ 370 (476)
.+.-++|++.-|..||+++-- -.|+++.+++....+...... .|.. ..+...|..++ |.+.+.-++
T Consensus 192 Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~--------~G~~--~~p~~a~ll~r--gl~TL~lR~ 259 (391)
T d1cl1a_ 192 ALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL--------MGQM--VDADTAYITSR--GLRTLGVRL 259 (391)
T ss_dssp GGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH--------TTCC--CCHHHHHHHHH--HHTTHHHHH
T ss_pred ccccccceEEeecchhccccccccccceeccccccccchhhhhc--------cccc--CCchhhhhhhc--cchhHHHHH
Confidence 111248999999999998432 356666666544333211111 1221 23566776655 457889999
Q ss_pred HHHHHHHHHHHHHHHhcCCeE
Q 011842 371 QKCLRNAHYLKDRLLDAGISA 391 (476)
Q Consensus 371 ~~~~~~a~~l~~~L~~~g~~~ 391 (476)
++..++|..+.+.|++.+...
T Consensus 260 ~~~~~nA~~vA~~L~~hp~V~ 280 (391)
T d1cl1a_ 260 RQHHESSLKVAEWLAEHPQVA 280 (391)
T ss_dssp HHHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 999999999999999987643
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2.7e-12 Score=127.90 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+....... .....++++||+|+..|++.+|....+..|+.-..+ |.....+....|-
T Consensus 79 ~~~~~la~~l~~~~~~~--~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~ 156 (387)
T d1vefa1 79 PMRGEFYRTLTAILPPE--LNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV 156 (387)
T ss_dssp HHHHHHHHHHHHTSCTT--EEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS
T ss_pred chHHHHHHHhhhhcccc--ceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCC
Confidence 44555555555544332 234789999999999999999886455555554444 4433333332221
Q ss_pred -eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEecCcccc
Q 011842 207 -ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGL 281 (476)
Q Consensus 207 -~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~ 281 (476)
.+..+|.+ |.+.|++.+.++ ...|++.-..+..|.+.+ +++|.++|++||+ ++++|+++.|+
T Consensus 157 ~~~~~~p~~-----d~~~l~~~~~~~---iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~-----llI~DEV~tGf 223 (387)
T d1vefa1 157 EPVEFIPYN-----DVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGA-----LLILDEIQTGM 223 (387)
T ss_dssp SCEEEECTT-----CHHHHHHHCCTT---EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTC-----EEEEECTTTTT
T ss_pred CCceEeCCC-----CHHHHHHhcCCC---eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCc-----eEEeccccccc
Confidence 35566665 889999888543 345555433555677655 9999999999999 99999999775
Q ss_pred cccccccC-CCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHH
Q 011842 282 MMPFVKKA-PKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR 360 (476)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~ 360 (476)
.-...... ..++. ..|+++++ |.++.++.++.++.+.+..+.+... +. ..|+.+ .+++..++++.
T Consensus 224 gR~G~~~~~~~~~v--~PDi~~~g--K~l~gG~~~~~~~~~~~~~~~~~~~--~~---g~T~~g-----nPla~aaa~a~ 289 (387)
T d1vefa1 224 GRTGKRFAFEHFGI--VPDILTLA--KALGGGVPLGVAVMREEVARSMPKG--GH---GTTFGG-----NPLAMAAGVAA 289 (387)
T ss_dssp TTTSSSSTHHHHTC--CCSEEEEC--GGGGTTSSCEEEEEEHHHHHTSCTT--SS---CCSSTT-----CHHHHHHHHHH
T ss_pred CccCCCcccccCCc--CCceeeec--ccCCCCccccccccceeeeeccccC--Cc---cccCCC-----Ccchhhhcccc
Confidence 22111000 00111 26998877 8888888999999998876554221 11 122222 24454444444
Q ss_pred hChhcHHHHHHHHHHHHHHHHHHHHhcCCeEeec--CCeeEEEEec--CCcHHH-----hhc-eeecccCCEEEEEEcCC
Q 011842 361 KGYKGFQKEVQKCLRNAHYLKDRLLDAGISAMLN--ELSSTVVFER--PQDEEF-----VRR-WQLACQGNIAHVVVMPN 430 (476)
Q Consensus 361 ~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~iv~f~~--~~~~~~-----~~~-~~l~~~~~~lRv~~~~~ 430 (476)
+..-.-.+..++..++.++|.+.|++.....+.. ....+..+.. +....+ ..+ +.++..++.+|+.....
T Consensus 290 L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~ 369 (387)
T d1vefa1 290 IRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLV 369 (387)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTT
T ss_pred hhhcccccccchHhhhhHHHHHHHHhcCCCceEEEeecceEEEEEEeCCchHHHHHHHHHCCCeEEecCCCEEEEECCcc
Confidence 3221224456677778889999998753211111 1112223332 222211 122 22355678889887778
Q ss_pred CCHHHHHHHHHHHHHHH
Q 011842 431 VTIDKLDDFLNELIENR 447 (476)
Q Consensus 431 ~T~edid~~~~~l~~~~ 447 (476)
+|++|||.++++|++++
T Consensus 370 it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 370 IEKEDLERVVEAVRAVL 386 (387)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998875
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=2.9e-12 Score=127.74 Aligned_cols=223 Identities=15% Similarity=0.073 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHH----HHHHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK----AARMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~----~~~~~G~~v~~v~~~ 214 (476)
.-...+.+.++.|-|.+. ++.+++|..|+..++.+... +|+.|++++..|..... .....|+++..+..+
T Consensus 58 PT~~~LE~~la~LE~~~~----a~~~~SGmaAi~~~~~~l~~--~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~ 131 (421)
T d2ctza1 58 PTVDVLEKRLAALEGGKA----ALATASGHAAQFLALTTLAQ--AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHCC--TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHhhcc--cccceeecCCcCCchhHHHHHHHhhccccceecccc
Confidence 344455566788877653 78999999888888877766 89999999999866543 445668988887643
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHHHhCCCCCceEEEEecCcc-cccccccccCCCCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFTQDRFYIHCDGALF-GLMMPFVKKAPKVS 293 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~~~g~~~~~~~lhvD~a~~-g~~~~~~~~~~~~~ 293 (476)
. +.+..+..+.++++ +|.+.+++|++..+.||++|+++|+++|+ .++||..++ ..+.. -.
T Consensus 132 ~----~~~~~~~~~~~~t~---li~~EtpsNP~l~v~Di~~i~~iA~~~g~-----~~vvDnT~a~tP~~~-------~P 192 (421)
T d2ctza1 132 E----RPEEFLALTDEKTR---AWWVESIGNPALNIPDLEALAQAAREKGV-----ALIVDNTFGMGGYLL-------RP 192 (421)
T ss_dssp C----CHHHHHHHCCTTEE---EEEEESSCTTTCCCCCHHHHHHHHHHHTC-----EEEEECGGGGGGTSC-------CG
T ss_pred c----CcchhccccCCCce---EEEEcCCCcceeEecchHHHHHHHHhcCC-----ceEecccccccceec-------cc
Confidence 1 34555666666665 89999999999999999999999999999 999999986 33321 11
Q ss_pred CcccccEEEEcCCCCCCCC--CCceeEEeehhhh-hhhc------CCccccCCC-------C----------CcccCCCC
Q 011842 294 FKKPIGSVSVSGHKFVGCP--MPCGVQITRMEHI-NVLS------SNVEYLASR-------D----------ATIMGSRN 347 (476)
Q Consensus 294 ~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~~~-~~l~------~~~~yl~~~-------~----------~~~~~sr~ 347 (476)
+..++|++.-|..|++++- .-.|+++.+++.. +... ....|-.-. . ....|.-
T Consensus 193 l~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~- 271 (421)
T d2ctza1 193 LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA- 271 (421)
T ss_dssp GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC-
T ss_pred cccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCC-
Confidence 2234999999999999742 2356666655421 1000 000010000 0 0001222
Q ss_pred ChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhcCCe
Q 011842 348 GHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDAGIS 390 (476)
Q Consensus 348 ~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~g~~ 390 (476)
..+...|..++ |.+.+.-++++..+++..+.+.|++.+..
T Consensus 272 -~sP~~a~l~~r--gl~TL~lRm~~~~~nA~~vA~~L~~hp~V 311 (421)
T d2ctza1 272 -LGPFEAWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQV 311 (421)
T ss_dssp -CCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred -CCHHHHHHHhc--CCcchhhHHHHHHHHHHHHHhhhccCCCe
Confidence 23566676555 45788999999999999999999998754
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.43 E-value=1.4e-10 Score=115.91 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=156.1
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhC--------CCcEEEecCCC-chHHHHHHHHcCC------
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVF--------PDGILYASRES-HYSVFKAARMYRM------ 206 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~--------p~~~Vl~s~~~-H~S~~~~~~~~G~------ 206 (476)
..+.+.+.++.+.+. ..++.+|++|+..|+.++|... ....++..... |..........+.
T Consensus 84 ~~~~~~~~~~~~~~~----v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~ 159 (404)
T d1z7da1 84 GICERYLTNLLGYDK----VLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 159 (404)
T ss_dssp HHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred HHHHHhhhhccccce----eeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccC
Confidence 345566777777653 7899999999999999987531 12234444333 3222222222111
Q ss_pred ------eEEEEeCCCCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEEEec
Q 011842 207 ------ECVKVDCLISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIHCDG 276 (476)
Q Consensus 207 ------~v~~v~~~~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~ 276 (476)
.+..+|.+ +.+.|+..+... ....|++.-.....|.+.| +++|.++|++||+ ++++|+
T Consensus 160 ~~~~~~~~~~~~~~-----~~~~l~~~~~~~--~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~-----llI~DE 227 (404)
T d1z7da1 160 FGPFAPQFSKVPYD-----DLEALEEELKDP--NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNV-----LFVADE 227 (404)
T ss_dssp ------CEEEECTT-----CHHHHHHHHTST--TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC-----EEEEEC
T ss_pred CCCCCccccccccc-----hHHHHHHHhcCC--CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCC-----EEEEEc
Confidence 23334433 667777776543 3345666544667788776 9999999999999 999999
Q ss_pred CcccccccccccCC-CCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHHHH
Q 011842 277 ALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFL 354 (476)
Q Consensus 277 a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~ 354 (476)
++.|+.-....... .+.+ ..|.++++ |.++.+ ..+|+++.++++.+.+... .. ..|+.+. +++.
T Consensus 228 V~tGfgRtG~~~~~e~~gv--~PDivt~g--K~l~gG~~p~~~v~~~~~i~~~~~~~--~~---~~T~~gn-----pl~~ 293 (404)
T d1z7da1 228 VQTGLGRTGKLLCVHHYNV--KPDVILLG--KALSGGHYPISAVLANDDIMLVIKPG--EH---GSTYGGN-----PLAA 293 (404)
T ss_dssp TTTTTTTTSSSSGGGGGTC--CCSEEEEC--GGGGTTSSCCEEEEECHHHHTTCCTT--CC---CCTTTTC-----HHHH
T ss_pred CccCCCcccccccccccCC--CCCEEEEc--ccccCCCCCcccccchHHHHccCCCC--Cc---CcCCCCC-----cchh
Confidence 99764221111110 1111 26988766 888766 6899999999876554321 11 1122222 3444
Q ss_pred HHH---HHHhChhcHHHHHH-HHHHHHHHHHHHHHhcCCeEee-cCCe-eEEEEecCCc--HHH-----hhceee-cccC
Q 011842 355 WYT---LNRKGYKGFQKEVQ-KCLRNAHYLKDRLLDAGISAML-NELS-STVVFERPQD--EEF-----VRRWQL-ACQG 420 (476)
Q Consensus 355 ~~~---l~~~g~~g~~~~~~-~~~~~a~~l~~~L~~~g~~~~~-~~~~-~iv~f~~~~~--~~~-----~~~~~l-~~~~ 420 (476)
.++ |+.+..+.+.+.+. ....+.+.+.+.+++.+...-. ..+. .-+.|..+.. ..+ .+++.+ +...
T Consensus 294 aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~ 373 (404)
T d1z7da1 294 SICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD 373 (404)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT
T ss_pred hhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcccHHHHHHHHHhCCeEEecCCC
Confidence 444 44333333333332 2233444445555555543221 1222 1222332221 111 233433 4456
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Q 011842 421 NIAHVVVMPNVTIDKLDDFLNELIENRSTW 450 (476)
Q Consensus 421 ~~lRv~~~~~~T~edid~~~~~l~~~~~~~ 450 (476)
+.+|+.....+|+++||+++++|+++++.+
T Consensus 374 ~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 374 KTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 788888777789999999999999998764
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.2e-11 Score=122.44 Aligned_cols=209 Identities=14% Similarity=0.118 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCCchHHHHHH----HHcCCeEEEEeCC
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYRMECVKVDCL 214 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~H~S~~~~~----~~~G~~v~~v~~~ 214 (476)
.-.+.+.+.++.|-|.+. ++.+++|..|+. ++..+.. +++.|+++...|......+ ...|+++..++.
T Consensus 55 PT~~~lE~~la~LE~~~~----a~~~sSGmaAi~-~~l~~l~--~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~- 126 (393)
T d1n8pa_ 55 PNRENLERAVAALENAQY----GLAFSSGSATTA-TILQSLP--QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND- 126 (393)
T ss_dssp HHHHHHHHHHHHHTTCSE----EEEESCHHHHHH-HHHHTSC--SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-
T ss_pred hHHHHHHHHHHHHhCCce----EEEecCchhHHH-hhhhccc--CCCeeeeeeeecccchhhhhhhhhcccceeEEeec-
Confidence 344455566888887653 778888866654 4444443 7888998888887655444 334777777652
Q ss_pred CCCccCHHHHHHHHHcCCCCcEEEEEeeCCCccccccCHHHHHHHHH----HhCCCCCceEEEEecCcccccccccccCC
Q 011842 215 ISGEIDCADFKAKLLQNKDKPAIINVNIGTTVKGAVDDLDLVIQTLE----ESGFTQDRFYIHCDGALFGLMMPFVKKAP 290 (476)
Q Consensus 215 ~~g~~D~~~Le~~l~~~~~~p~~vv~t~gtt~tG~id~l~~I~~ia~----~~g~~~~~~~lhvD~a~~g~~~~~~~~~~ 290 (476)
+.+++++++.++++ +|.+..++|++..+.||++|+++|+ ++|+ .++||..++..+..
T Consensus 127 -----~~~~~~~~i~~~t~---lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~-----~lvVDnT~atP~~~------ 187 (393)
T d1n8pa_ 127 -----LLNDLPQLIKENTK---LVWIETPTNPTLKVTDIQKVADLIKKHAAGQDV-----ILVVDNTFLSPYIS------ 187 (393)
T ss_dssp -----HHHHHHHHSCSSEE---EEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTC-----EEEEECTTTHHHHC------
T ss_pred -----chHHHHHHhhhhcc---eeEecCcchhhhhccchhhhhhhhhhhcccCCc-----eEEEecCccCcccC------
Confidence 56789998887775 8999999999999999999999999 5566 99999998765432
Q ss_pred CCCCcccccEEEEcCCCCCCCC--CCceeEEeehh-hhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHH
Q 011842 291 KVSFKKPIGSVSVSGHKFVGCP--MPCGVQITRME-HINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQ 367 (476)
Q Consensus 291 ~~~~~~~~Dsi~~s~hK~l~~p--~~~G~l~~~~~-~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~ 367 (476)
-.+.-++|++.-|..|++++- .-.|+++.+++ +.+.+...... .|.. ..+...|..++ |.+.+.
T Consensus 188 -~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~--------~G~~--~~p~~a~ll~r--gl~Tl~ 254 (393)
T d1n8pa_ 188 -NPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA--------IGAI--PSPFDAWLTHR--GLKTLH 254 (393)
T ss_dssp -CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH--------HCCC--CCHHHHHHHHH--HHTTHH
T ss_pred -CchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhh--------cCCC--CChHHHHHHHh--CCcchh
Confidence 111124999999999999742 33566666654 33333221111 1221 22566776665 457889
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 011842 368 KEVQKCLRNAHYLKDRLLDA 387 (476)
Q Consensus 368 ~~~~~~~~~a~~l~~~L~~~ 387 (476)
-++++..++|..+.+.|++.
T Consensus 255 lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 255 LRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999765
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.8e-10 Score=115.88 Aligned_cols=293 Identities=13% Similarity=0.044 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------
Q 011842 139 QFEVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM----------- 206 (476)
Q Consensus 139 ~le~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~----------- 206 (476)
+.+.++.+.+.+++.-+. ....+++++||+|+..|++.+|....+..|+.-+.+ |....-+..+.|-
T Consensus 83 ~~~~~la~~l~~~~p~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~ 161 (425)
T d1sffa_ 83 EPYLELCEIMNQKVPGDF-AKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM 161 (425)
T ss_dssp HHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred cHHHHHHHHHHhhhhhcc-cceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccc
Confidence 566677888888885331 124788999999999999999986555556655544 4433333333331
Q ss_pred --eEEEEeCC--CCCcc---CHHHHHHHHHc--CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceEEE
Q 011842 207 --ECVKVDCL--ISGEI---DCADFKAKLLQ--NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFYIH 273 (476)
Q Consensus 207 --~v~~v~~~--~~g~~---D~~~Le~~l~~--~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~lh 273 (476)
.....+.. ..... ..+.+++.+.. .......|++.-.....|.+.| ++.|.++|++||+ +++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gi-----llI 236 (425)
T d1sffa_ 162 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI-----MLI 236 (425)
T ss_dssp CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTC-----EEE
T ss_pred cCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCc-----eEE
Confidence 12222221 11111 11122222222 2233455666533445565543 8999999999999 999
Q ss_pred EecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhHH
Q 011842 274 CDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPI 352 (476)
Q Consensus 274 vD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l 352 (476)
+|+++.|+.-....... .+.+ ..|.++++ |.++.++++|+++++++..+.+.... + ..|+.+. ++
T Consensus 237 ~DEV~tG~gR~g~~~a~~~~gv--~PDi~~~g--K~l~gG~P~~av~~~~~i~~~~~~~~-~----~~T~~gn-----pl 302 (425)
T d1sffa_ 237 ADEVQSGAGRTGTLFAMEQMGV--APDLTTFA--KSIAGGFPLAGVTGRAEVMDAVAPGG-L----GGTYAGN-----PI 302 (425)
T ss_dssp EECTTTTTTTTSSSSGGGGTTS--CCSEEEEC--GGGGTSSCCEEEEEEHHHHTTSCTTS-B----CCSSSSC-----HH
T ss_pred eccccccCCCcchhhHHHhcCC--Cccceecc--cccCCCcceEEEEEcHHHHHhhCCCC-C----CCCCCcC-----HH
Confidence 99999874221111110 1111 26988866 99988899999999999876553211 1 1122222 34
Q ss_pred HHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHh----cCCeEee-cCCe-eEEEEecCC-----cHHH---------hh
Q 011842 353 FLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLD----AGISAML-NELS-STVVFERPQ-----DEEF---------VR 412 (476)
Q Consensus 353 ~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~----~g~~~~~-~~~~-~iv~f~~~~-----~~~~---------~~ 412 (476)
+..++++.+..-.-.+..++...+.++|.+.|++ .+...-. ..++ .-+.|..+. +..+ .+
T Consensus 303 ~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~ 382 (425)
T d1sffa_ 303 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDK 382 (425)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHC
Confidence 4444444432111123445555555666655544 4543222 2222 122232111 1111 12
Q ss_pred ceee-cc--cCCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Q 011842 413 RWQL-AC--QGNIAHVVVMPNVTIDKLDDFLNELIENRSTWY 451 (476)
Q Consensus 413 ~~~l-~~--~~~~lRv~~~~~~T~edid~~~~~l~~~~~~~~ 451 (476)
++.+ ++ ..+.+|++....+|++|||.++++|+++.+++.
T Consensus 383 Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 383 GLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp TEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3333 22 357788887778999999999999999988765
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.33 E-value=2.1e-10 Score=115.70 Aligned_cols=288 Identities=15% Similarity=0.019 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhhCCCcEEEecCCC-chHHHHHHHHcCC-----------eE
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRES-HYSVFKAARMYRM-----------EC 208 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~~p~~~Vl~s~~~-H~S~~~~~~~~G~-----------~v 208 (476)
..++.+.|.++..-.. ...+|+++||+|+..|++.||....+..|+.-+.+ |.....+....+- ..
T Consensus 85 ~~~la~~L~~~~~~~~--~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 162 (431)
T d1zoda1 85 VVDLATRLANITPPGL--DRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS 162 (431)
T ss_dssp HHHHHHHHHHHSCTTC--CEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred HHHHHHHHHHhCCccc--ceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCc
Confidence 3456777777763222 23899999999999999999886555555554444 4333333322211 12
Q ss_pred EEEeCCCC---------CccC---HHHHHHHHHc-CCCCcEEEEEeeCCCccccccC----HHHHHHHHHHhCCCCCceE
Q 011842 209 VKVDCLIS---------GEID---CADFKAKLLQ-NKDKPAIINVNIGTTVKGAVDD----LDLVIQTLEESGFTQDRFY 271 (476)
Q Consensus 209 ~~v~~~~~---------g~~D---~~~Le~~l~~-~~~~p~~vv~t~gtt~tG~id~----l~~I~~ia~~~g~~~~~~~ 271 (476)
..++.... ...+ .+.++..+.. ..+....|++.-....-|.+.| +++|.++|++||+ +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gi-----l 237 (431)
T d1zoda1 163 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM-----L 237 (431)
T ss_dssp EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC-----E
T ss_pred eeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCc-----e
Confidence 33332211 0112 3334433332 3334455666533444566655 9999999999999 9
Q ss_pred EEEecCcccccccccccCCCCCCcccccEEEEcCCCCCCCCCCceeEEeehhhhhhhcCCccccCCCCCcccCCCCChhH
Q 011842 272 IHCDGALFGLMMPFVKKAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAP 351 (476)
Q Consensus 272 lhvD~a~~g~~~~~~~~~~~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~ 351 (476)
+++|+++.|+.-..........+ -..|.++++ |.++.++..+.++.+++....+.... +.. ..|+.+ .+
T Consensus 238 lI~DEV~tG~gRtG~~~~~~~~g-v~PDi~~~g--K~l~gG~p~~av~~~~~~~~~~~~~~-~~~--~~T~~g-----~p 306 (431)
T d1zoda1 238 LILDEAQTGVGRTGTMFACQRDG-VTPDILTLS--KTLGAGLPLAAIVTSAAIEERAHELG-YLF--YTTHVS-----DP 306 (431)
T ss_dssp EEEECTTTTTTTTSSSSTHHHHT-CCCSEEEEC--HHHHTTSSCEEEEECHHHHHHHHHTT-CCC--CCTTTT-----CH
T ss_pred EEeccccccccccccccccccCC-CCcchhccc--cccccccccceeeeeecchhhhhccc-ccc--cCCCCC-----Cc
Confidence 99999998642211000000001 126988877 88888888999998887654432111 110 112221 23
Q ss_pred HHHH---HHHHHhChhcHHHHHHHHHHHHHHHHHHH----HhcCCeEee-cCCeeE-EEEec--C----Cc---HHHh--
Q 011842 352 IFLW---YTLNRKGYKGFQKEVQKCLRNAHYLKDRL----LDAGISAML-NELSST-VVFER--P----QD---EEFV-- 411 (476)
Q Consensus 352 l~~~---~~l~~~g~~g~~~~~~~~~~~a~~l~~~L----~~~g~~~~~-~~~~~i-v~f~~--~----~~---~~~~-- 411 (476)
++.. +.++.+..+. ..++..++.+++.+.+ .+.++..-. ..+... +-|.. . .+ ..+.
T Consensus 307 l~~aaa~a~l~~i~~~~---~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~ 383 (431)
T d1zoda1 307 LPAAVGLRVLDVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRE 383 (431)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhh---hhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHH
Confidence 3333 3344443333 3444444444454444 444543211 222211 22221 1 11 1111
Q ss_pred ---hcee-----ecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 412 ---RRWQ-----LACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 412 ---~~~~-----l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
+++. ....++.+|++....+|++|||.++++|+++.++
T Consensus 384 ~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 384 CMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp HHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2222 2335678888888889999999999999998875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.5e-10 Score=113.79 Aligned_cols=290 Identities=12% Similarity=0.050 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh-----CCCcEEEecCC-CchHHHHHHHHcCC--------
Q 011842 141 EVGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV-----FPDGILYASRE-SHYSVFKAARMYRM-------- 206 (476)
Q Consensus 141 e~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~-----~p~~~Vl~s~~-~H~S~~~~~~~~G~-------- 206 (476)
..++.+++.+....+. ...+++++|++|+-.|+..+|.. .++..|+.-+. -|.....+..+.+-
T Consensus 88 ~~~l~~~l~~~~~~~~--~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~ 165 (429)
T d1s0aa_ 88 AIELCRKLVAMTPQPL--ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHHHSCTTC--CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred HHHHHHHHHhhhccCc--ceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcccccccc
Confidence 3445566666665543 34889999999999999998753 12334554444 45444444433321
Q ss_pred -----eEEEEeCCC------CCccCHHHHHHHHHcCCCCcEEEEEeeC-CCcccccc-C---HHHHHHHHHHhCCCCCce
Q 011842 207 -----ECVKVDCLI------SGEIDCADFKAKLLQNKDKPAIINVNIG-TTVKGAVD-D---LDLVIQTLEESGFTQDRF 270 (476)
Q Consensus 207 -----~v~~v~~~~------~g~~D~~~Le~~l~~~~~~p~~vv~t~g-tt~tG~id-~---l~~I~~ia~~~g~~~~~~ 270 (476)
.....|... ...-+++.+++.+.+.......|++.-. .+.-|.+. | +++|.++|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi----- 240 (429)
T d1s0aa_ 166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI----- 240 (429)
T ss_dssp TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC-----
T ss_pred CccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc-----
Confidence 122333221 1234667777777766555556666422 23333432 2 8999999999999
Q ss_pred EEEEecCccccccccccc-CCCCCCcccccEEEEcCCCCCCCC-CCceeEEeehhhhhhhcCCc--cccCCCCCcccCCC
Q 011842 271 YIHCDGALFGLMMPFVKK-APKVSFKKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSNV--EYLASRDATIMGSR 346 (476)
Q Consensus 271 ~lhvD~a~~g~~~~~~~~-~~~~~~~~~~Dsi~~s~hK~l~~p-~~~G~l~~~~~~~~~l~~~~--~yl~~~~~~~~~sr 346 (476)
++++|+++.|+.--..-. ...+++ ..|.++++ |.++.+ .+.|+++++++..+.+.... .+.. ..|+.+.
T Consensus 241 llI~DEV~tGfGRtG~~~~~~~~~v--~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~--~~T~~gn- 313 (429)
T d1s0aa_ 241 LLIADEIATGFGRTGKLFACEHAEI--APDILCLG--KALTGGTMTLSATLTTREVAETISNGEAGCFMH--GPTFMGN- 313 (429)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGGTC--CCSEEEEC--GGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSC--CCTTTTC-
T ss_pred ceehhhcccccccccccccccccee--cccccccc--cccccccccccchhhHHHHHhccCCCCCcceee--cCCCCCC-
Confidence 999999997752211000 001111 26888877 777555 68999999998766553211 1111 1122222
Q ss_pred CChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc---CCeE-eecCCeeEEEEe--cCCcH-HH-----hhce
Q 011842 347 NGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA---GISA-MLNELSSTVVFE--RPQDE-EF-----VRRW 414 (476)
Q Consensus 347 ~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---g~~~-~~~~~~~iv~f~--~~~~~-~~-----~~~~ 414 (476)
++...++++.+..-.-++..++..++.++|+++|++. +... +...+ .+..+. .+... .+ .+++
T Consensus 314 ----p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~G-l~~~~e~~~~~~~~~~~~~~~~~Gl 388 (429)
T d1s0aa_ 314 ----PLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPVNMAALQKFFVEQGV 388 (429)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCBCHHHHHHHHHHTTE
T ss_pred ----cccchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeecc-cEEEEEecCcccHHHHHHHHHHCCc
Confidence 3444444444322111345677777888899998764 2111 11111 233333 33221 11 2344
Q ss_pred eecccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 415 QLACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 415 ~l~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
.+...++.+|++....+|++|||+++++|++++++
T Consensus 389 ~~~~~g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 389 WIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ECCCBTTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 45555788888877778999999999999887643
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.14 E-value=3.1e-09 Score=107.80 Aligned_cols=283 Identities=13% Similarity=0.034 Sum_probs=151.8
Q ss_pred HHHHHHHHHHcCCCCCcccEEEcCCchhHHHHHHHHHHhh--------------------------CCCcEEEecCC-Cc
Q 011842 142 VGVLDWFARLWELENNEYWGYITNCGTEGNLHGILVGREV--------------------------FPDGILYASRE-SH 194 (476)
Q Consensus 142 ~~~~~~la~l~g~~~~~~~g~~t~ggt~An~~al~aa~~~--------------------------~p~~~Vl~s~~-~H 194 (476)
+++.+.+.++.+-+. ...+|+++|++|+-.|+.++|.. .++..|++-.. -|
T Consensus 103 ~~lae~l~~~~~~~~--~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syH 180 (461)
T d1ohwa_ 103 EKLRESLLSVAPKGM--SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 180 (461)
T ss_dssp HHHHHTGGGGCCTTC--CEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHHHHHHhhhccCc--ceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcC
Confidence 344444444443332 34899999999999999998742 12334555444 45
Q ss_pred hHHHHHHHHcCCe-----------EEEEeCCC-C-------------CccCHHHHHHHHH---cCCCCcEEEEEeeCCCc
Q 011842 195 YSVFKAARMYRME-----------CVKVDCLI-S-------------GEIDCADFKAKLL---QNKDKPAIINVNIGTTV 246 (476)
Q Consensus 195 ~S~~~~~~~~G~~-----------v~~v~~~~-~-------------g~~D~~~Le~~l~---~~~~~p~~vv~t~gtt~ 246 (476)
.....+..+.|-+ ....+... . ...+.+++++.+. ........|++.-....
T Consensus 181 G~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~ 260 (461)
T d1ohwa_ 181 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE 260 (461)
T ss_dssp CSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred CCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecccccc
Confidence 4444443333221 11111110 0 0123455666553 34455556777655555
Q ss_pred cccccC----HHHHHHHHHHhCCCCCceEEEEecCcccccccccccCC-CCCCcccccEEEEcCCCCCCCCCCceeEEee
Q 011842 247 KGAVDD----LDLVIQTLEESGFTQDRFYIHCDGALFGLMMPFVKKAP-KVSFKKPIGSVSVSGHKFVGCPMPCGVQITR 321 (476)
Q Consensus 247 tG~id~----l~~I~~ia~~~g~~~~~~~lhvD~a~~g~~~~~~~~~~-~~~~~~~~Dsi~~s~hK~l~~p~~~G~l~~~ 321 (476)
.|.+.+ +++|.++|++||+ ++++|+++.|+.-.+.-... .+......|.++++ |.++ .|++...
T Consensus 261 ~G~~~~~~~fl~~lr~lc~~~gi-----llI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~----~g~~~~~ 329 (461)
T d1ohwa_ 261 GGDNHASDDFFRKLRDISRKHGC-----AFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMM----TGGFFHK 329 (461)
T ss_dssp TTCBCCCHHHHHHHHHHHHHTTC-----EEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGS----SEEEEEC
T ss_pred ccccCchhhHHHHHHHHHHhhCc-----ceeccccccccccccccccccccccccCchhhhhh--hccc----ccccccc
Confidence 666543 8999999999999 99999999765321100000 01111236888776 7665 3555544
Q ss_pred hhhhhhhcCCccccCCCCCcccCCCCChhHHHHHHHHHHhChhcHHHHHHHHHHHHHHHHHHHHhc----C-Ce-EeecC
Q 011842 322 MEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLLDA----G-IS-AMLNE 395 (476)
Q Consensus 322 ~~~~~~l~~~~~yl~~~~~~~~~sr~~~~~l~~~~~l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----g-~~-~~~~~ 395 (476)
.... ....+.. ..|+.+.+ .......++++.+..+ +.+++..++.++|.++|+++ + .. .+...
T Consensus 330 ~~~~----~~~~~~~--~~T~~g~p--~~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~ 398 (461)
T d1ohwa_ 330 EEFR----PNAPYRI--FNTWLGDP--SKNLLLAEVINIIKRE---DLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR 398 (461)
T ss_dssp GGGS----CSSTTSS--CCSCSSCH--HHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred cccc----ccccccc--cccccccc--ccchhhcccchhhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeee
Confidence 3221 1111110 11222221 1222233344444333 35566666777777777663 2 11 11111
Q ss_pred CeeEEEEecCCcH---HH-----hhceee-cccCCEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Q 011842 396 LSSTVVFERPQDE---EF-----VRRWQL-ACQGNIAHVVVMPNVTIDKLDDFLNELIENRST 449 (476)
Q Consensus 396 ~~~iv~f~~~~~~---~~-----~~~~~l-~~~~~~lRv~~~~~~T~edid~~~~~l~~~~~~ 449 (476)
..++.+..++++ .+ .+++.+ ++..+.+|+.....+|++|||+++++|++++++
T Consensus 399 -Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 399 -GTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp -TTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -eEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 234556665432 11 123333 345678888777778999999999999998764
|