Citrus Sinensis ID: 011857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
MPSNNELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKEVC
cccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHc
cccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcc
mpsnneleeieaplleddsaDQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLplylfaspllklfgqpndvaeLSATVSMWmlplhfsfafqfpLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGyvvfggcpltwtgfsAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMtgnlpnpklaVDALSICMTINGWEIMIPFAFLAGTGVRVAnelgagngkgakFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKEVC
MPSNNELEEieaplleddsaDQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEkaskickevc
MPSNNELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELaaisiannvivaFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVlllplylfaspllklFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMavawvslvallvHIFVSWLFVYKMQLGLIATIHILNFSWWvlvfglfgyvvfggCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKEVC
**********************ALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDK*************
***********************LARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICK***
*********IEAPLLEDDSADQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKEVC
********************DQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKIC***C
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MPSNNELEEIEAPLLEDDSADQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICKEVC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query476 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.987 0.927 0.405 1e-97
Q8GXM8476 MATE efflux family protei no no 0.962 0.962 0.324 5e-67
Q9SIA4476 MATE efflux family protei no no 0.966 0.966 0.342 1e-66
Q9SIA5476 MATE efflux family protei no no 0.924 0.924 0.334 6e-66
Q9LUH2477 MATE efflux family protei no no 0.949 0.947 0.343 3e-64
Q9LUH3469 MATE efflux family protei no no 0.962 0.976 0.338 1e-63
Q9SIA3476 MATE efflux family protei no no 0.962 0.962 0.321 4e-63
Q9SIA1477 MATE efflux family protei no no 0.945 0.943 0.325 1e-62
Q8RWF5483 MATE efflux family protei no no 0.905 0.892 0.327 2e-60
Q8K0H1567 Multidrug and toxin extru yes no 0.913 0.767 0.297 1e-44
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  357 bits (916), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/479 (40%), Positives = 293/479 (61%), Gaps = 9/479 (1%)

Query: 3   SNNELEEIEAPLLED--DSADQALARKVWV-----ESKKLWHIVGPSIFSRLATYSMSVV 55
           S++++ E  +P +E+        +  + W+     ESK LW + G SI   +  Y +S V
Sbjct: 16  SDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSVLNYMLSFV 75

Query: 56  TIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQR 115
           T+ F GHLG L+LA  SIA   I    +G++LGMASA++T+CGQA+GA++Y  +G+  QR
Sbjct: 76  TVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQR 135

Query: 116 SWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFL 175
           + ++     V L  LY ++ P+LK  GQ   +A      +  M+P  ++FA   P+QRFL
Sbjct: 136 AMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFL 195

Query: 176 QCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGYVVFG 235
           Q Q     +A++SL   L+H  ++WL    +  GL+    IL+FSWW+LV     Y++  
Sbjct: 196 QAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMS 255

Query: 236 -GCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALS 294
             C  TWTGFS  AF G+W + KL+ AS VMLCLE WY + L++++G L NP +++DA+S
Sbjct: 256 PNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAIS 315

Query: 295 ICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMI 354
           ICM    W++       A   VRV+NELGAGN + A  + +V  +T+ LI     +++++
Sbjct: 316 ICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLV 375

Query: 355 YHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTY 414
           +   ++  FTS   ++ AV++L  LLA +I LN IQP+ SGVA+GSGWQ+ VAYVNL TY
Sbjct: 376 FRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTY 435

Query: 415 YFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASKICK 473
           Y +G+P+G ++G+    GV GIW GMI  G  +QTL L V+T++ +W  E E A++  K
Sbjct: 436 YVIGLPIGCVLGFKTSLGVAGIWWGMI-AGVILQTLTLIVLTLKTNWTSEVENAAQRVK 493
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
224097194488 predicted protein [Populus trichocarpa] 0.987 0.963 0.787 0.0
357485623490 Protein TRANSPARENT TESTA [Medicago trun 0.985 0.957 0.762 0.0
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.985 0.955 0.742 0.0
255586693482 multidrug resistance pump, putative [Ric 0.993 0.981 0.771 0.0
449438809484 PREDICTED: protein TRANSPARENT TESTA 12- 0.991 0.975 0.723 0.0
302142014521 unnamed protein product [Vitis vinifera] 0.981 0.896 0.712 0.0
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.981 0.953 0.712 0.0
356508053503 PREDICTED: protein TRANSPARENT TESTA 12 0.951 0.900 0.710 0.0
255586695507 multidrug resistance pump, putative [Ric 0.968 0.909 0.707 0.0
297797567486 hypothetical protein ARALYDRAFT_496771 [ 0.949 0.930 0.726 0.0
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/479 (78%), Positives = 414/479 (86%), Gaps = 9/479 (1%)

Query: 1   MPSNN---ELEEIEAPLLE------DDSADQALARKVWVESKKLWHIVGPSIFSRLATYS 51
           M SN    +  E + PLLE      DD   Q LA +V VESKKLWHIVGP+IFSRL +YS
Sbjct: 1   MSSNGAVLDYLEAKVPLLEEKTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTSYS 60

Query: 52  MSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYYMLGV 111
           M V+T AFAGHLGDLELA ISIANNVIV F+FGLLLGMASALETLCGQAFGAKKYYMLGV
Sbjct: 61  MLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLGV 120

Query: 112 YMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPL 171
           YMQRSWIVLF CC+LLLPLYLFASP+LKL GQPND+AELS   ++WM+PLHFSFAFQFPL
Sbjct: 121 YMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQFPL 180

Query: 172 QRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGLIATIHILNFSWWVLVFGLFGY 231
           QRFLQ QLK M +AWVS VAL+VHIFVSWL VYK+QLG+  T   LNFSWWVLVFGL GY
Sbjct: 181 QRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLLGY 240

Query: 232 VVFGGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVD 291
            + GGCPLTWTGFS EAFSGLWEF KLSAASGVMLCLENWYYRIL+LMTGNL N ++AVD
Sbjct: 241 TICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTGNLKNAEIAVD 300

Query: 292 ALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLL 351
           ALSICMTINGWE+MIP AF AGTGVRVANELGAGNGKGAKFATIVSV TS +IGL FWLL
Sbjct: 301 ALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVTTSVIIGLVFWLL 360

Query: 352 IMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNL 411
           IM +H ++  IFTSSE +L+AVN+LSILLAFT+LLNS+QPV SGVAVGSGWQ YVAY+NL
Sbjct: 361 IMFFHDKLTWIFTSSEPVLEAVNKLSILLAFTVLLNSVQPVLSGVAVGSGWQKYVAYINL 420

Query: 412 GTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKASK 470
           G YY +GVPLGFLMGW FHQGV GIW GMIFGGTAVQTLILA+IT+RCDW+KEAEKAS+
Sbjct: 421 GCYYAIGVPLGFLMGWFFHQGVMGIWAGMIFGGTAVQTLILAIITIRCDWEKEAEKASQ 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|255586695|ref|XP_002533973.1| multidrug resistance pump, putative [Ricinus communis] gi|223526045|gb|EEF28411.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297797567|ref|XP_002866668.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] gi|297312503|gb|EFH42927.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.976 0.956 0.641 7.1e-164
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.972 0.946 0.611 4.6e-160
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.970 0.940 0.575 5.7e-146
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.939 0.904 0.446 1e-107
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.951 0.917 0.440 1.5e-106
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.951 0.917 0.451 3.1e-106
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.922 0.876 0.460 4e-106
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.924 0.874 0.452 1.3e-102
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.968 0.952 0.431 2.6e-102
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.968 0.911 0.437 8.8e-102
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
 Identities = 300/468 (64%), Positives = 355/468 (75%)

Query:     3 SNNELEEIEAP-LLEDDSADQALARKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAG 61
             S + +  +++P   E+D   + L  ++ VE+KKLW IVGP+IFSR+ TYSM V+T AFAG
Sbjct:    10 SESRVALLKSPHTAEEDG--EGLKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAG 67

Query:    62 HLGDLELXXXXXXXXXXXXFNFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLF 121
             HLGDLEL            FNFGLLLGMASALETLCGQAFGAKKY+MLGVYMQRSWIVLF
Sbjct:    68 HLGDLELAAISIVNNVTVGFNFGLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLF 127

Query:   122 TCCVXXXXXXXXXXXXXXXFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKT 181
              CCV                GQP+D+AELS  V++W++PLHF+F   FPLQRFLQCQLK 
Sbjct:   128 FCCVLLLPTYIFTTPVLKFLGQPDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKN 187

Query:   182 MXXXXXXXXXXXXHIFVSWLFVYKMQLGLIATIHILNFSWWXXXXXXXXXXXXXXCPLTW 241
                          HI V WLFV  ++LG++ T+  ++ SWW              CPLTW
Sbjct:   188 RVTAYAAAVALVVHILVCWLFVDGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTW 247

Query:   242 TGFSAEAFSGLWEFVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTING 301
             TG S+EA +GLWEF+KLSA+SGVMLCLENWYYRIL++MTGNL N ++AVD+LSICM ING
Sbjct:   248 TGLSSEALTGLWEFLKLSASSGVMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAING 307

Query:   302 WEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIAL 361
             WE+MIP AF AGTGVRVANELGAGNGKGA+FATIVSV  S +IGLFFW+LIM+ H +IA 
Sbjct:   308 WEMMIPLAFFAGTGVRVANELGAGNGKGARFATIVSVTQSLIIGLFFWVLIMLLHNQIAW 367

Query:   362 IFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPL 421
             IF+SS  +L AVN+LS+LLAFT+LLNS+QPV SGVAVGSGWQSYVAY+NLG YY +GVPL
Sbjct:   368 IFSSSVAVLDAVNKLSLLLAFTVLLNSVQPVLSGVAVGSGWQSYVAYINLGCYYCIGVPL 427

Query:   422 GFLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKAS 469
             GFLMGW F  GV GIW GMIFGGTAVQT+IL+ ITMRCDW+KEA+KAS
Sbjct:   428 GFLMGWGFKLGVMGIWGGMIFGGTAVQTMILSFITMRCDWEKEAQKAS 475
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-162
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-50
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 7e-47
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 9e-37
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 7e-36
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-29
pfam01554161 pfam01554, MatE, MatE 1e-28
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 7e-24
pfam01554161 pfam01554, MatE, MatE 3e-23
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-22
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-22
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-19
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 9e-18
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-16
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-10
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-09
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-08
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-05
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-05
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-04
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-04
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-04
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 7e-04
cd13147 441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 0.001
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.001
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 0.002
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 0.003
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  464 bits (1196), Expect = e-162
 Identities = 192/438 (43%), Positives = 278/438 (63%), Gaps = 3/438 (0%)

Query: 31  ESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMA 90
           E+KKL  +  P + + L  YS+SVV++ F GHLG LELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 91  SALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAEL 150
           SAL+TLCGQAFGAK Y ++GVY+QR+ ++L  CCV +  L+L   P+L L GQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 151 SATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYKMQLGL 210
           +     W++P  F++A   PL+R+LQ Q   + + ++SLVALL++I +++L V+ + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 211 IATIHILNFSWWVLVFGLFGYVVF-GGCPLTWTGFSAEAFSGLWEFVKLSAASGVMLCLE 269
           I      + S+W++V  L  Y+ F  G   TW GFS EAF G   F+KL+  S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 270 NWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKG 329
            W + IL+L+ G LP   +A+ A SIC+T      MIP        VRV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 330 AKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSI 389
           AK A IV+++ S +IG+   +L+++     A +FTS E ++  V +L  +LA   + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 390 QPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWVFHQGVKGIWLGMIFGGTAVQT 449
           Q V SGV  G G Q   AYVNL  YY +G+P+G L+ +V   G+KG+W+G+I  G  +Q 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIA-GLILQA 418

Query: 450 LILAVITMRCDWDKEAEK 467
           +IL +I +R DWDKEAEK
Sbjct: 419 VILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 476
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.97
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK00187 464 multidrug efflux protein NorA; Provisional 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
PRK01766 456 multidrug efflux protein; Reviewed 99.87
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.81
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.8
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.76
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.73
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.67
PRK10459492 colanic acid exporter; Provisional 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
PRK15099416 O-antigen translocase; Provisional 99.63
COG2244480 RfbX Membrane protein involved in the export of O- 99.55
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.38
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.25
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.23
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.03
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.49
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.39
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.38
COG4267467 Predicted membrane protein [Function unknown] 98.33
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.26
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.94
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.65
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.61
PF05975 386 EcsB: Bacterial ABC transporter protein EcsB; Inte 90.28
COG4267 467 Predicted membrane protein [Function unknown] 86.84
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7e-57  Score=440.39  Aligned_cols=437  Identities=25%  Similarity=0.370  Sum_probs=412.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011857           28 VWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKKYY  107 (476)
Q Consensus        28 ~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~~~  107 (476)
                      .++..|+++++++|++++++.+.+++++|+.++||+|++++++.+++.++..+ ...+..|++.+.++.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            57799999999999999999999999999999999999999999999999999 88899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHHH
Q 011857          108 MLGVYMQRSWIVLFTCCVLLL-PLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAW  186 (476)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  186 (476)
                      ++++..++++.+.++.+++.. +.+.+.++++.+++.++|+.+.+..|+++..++.++..++....+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999997776 5689999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cC-CccchHHHHHHHHHHHHHHHHHHHHHhcc--cccccCCCcHHhHhcHHHHHHHHhHH
Q 011857          187 VSLVALLVHIFVSWLFVYK-MQ-LGLIATIHILNFSWWVLVFGLFGYVVFGG--CPLTWTGFSAEAFSGLWEFVKLSAAS  262 (476)
Q Consensus       187 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~  262 (476)
                      .+.+++++|+++|++|++. ++ +|+.|+++||++++.+..++...++++++  ......+..+.+++.+|++++.|.|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999997 57 99999999999999999999999998864  23332333334468999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 011857          263 GVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSS  342 (476)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (476)
                      ++++..+...+...+.+++++|  ++++|+|+++.++.++..+++.+++++..|.+++++|+||+|++++..+.+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhhHHHH
Q 011857          343 LIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLG  422 (476)
Q Consensus       343 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  422 (476)
                      .+++..++.++++++++..+|++|+|+.+.+..++.+..+..++++.+.+..+.+++.||+|.+++.++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH
Q 011857          423 FLMGWVFHQGVKGIWLGMIFGGTAVQTLILAVITMRCDWDKEAEKAS  469 (476)
Q Consensus       423 ~~l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (476)
                      +++..+. +|..|+|++.. .++.+..++..+++++++|+++..+..
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAAA  453 (455)
T ss_pred             HHHhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence            9999433 99999999999 999999999999999998988755543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-11
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 284 PNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSVVTSSL 343
           P     V A  + +  +    M P +  A   +RV ++LG  + KGA  A  V ++T   
Sbjct: 267 PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLA 326
Query: 344 IGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQ 403
                 LL +++ ++IAL++T ++V++    +L +  A    ++++Q V +G   G    
Sbjct: 327 TACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDM 386
Query: 404 SYVAYVNLGTYYFVGVPLGFLMG---WVFHQ--GVKGIWLGMIFGGTA 446
           + + +    +Y+ +G+P G+++G   W+  Q  G KG WLG I G +A
Sbjct: 387 TAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSA 434

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-69
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 9e-08
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  226 bits (578), Expect = 5e-69
 Identities = 88/434 (20%), Positives = 184/434 (42%), Gaps = 23/434 (5%)

Query: 26  RKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGL 85
            +   E+  L  +  P + + +A   M  V    AG +  +++AA+SIA ++ +      
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILF 63

Query: 86  LLGMASALETLCGQAFGAKKYYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPN 145
            +G+  AL  +  Q  GA + + +   + +  I+     V ++ +      +++      
Sbjct: 64  GVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEE 123

Query: 146 DVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVAWVSLVALLVHIFVSWLFVYK 205
            +A  +      ++    ++     L+ F      T     +  + LL++I ++W+FVY 
Sbjct: 124 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYG 183

Query: 206 M----QLGL----IATIHILNFSWWVLVFGLFGYVVFGG---CPLTWTGFSAEAFSGLWE 254
                +LG     +AT       +W+++  L  Y+V          +  F       L  
Sbjct: 184 KFGAPELGGVGCGVATA----IVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 255 FVKLSAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGT 314
             +L       L  E   + ++ L+   L +  +A  A  + +  +    M P +  A  
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297

Query: 315 GVRVANELGAGNGKGAKFATIVSVVTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVN 374
            +RV ++LG  + KGA  A  V ++T         LL +++ ++IAL++T ++V++    
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 375 ELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVGVPLGFLMGWV-----F 429
           +L +  A    ++++Q V +G   G    + + +    +Y+ +G+P G+++G        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417

Query: 430 HQGVKGIWLGMIFG 443
             G KG WLG I G
Sbjct: 418 PLGAKGFWLGFIIG 431
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 92.03
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.11
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 88.9
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.4e-49  Score=395.34  Aligned_cols=430  Identities=20%  Similarity=0.349  Sum_probs=394.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCc
Q 011857           26 RKVWVESKKLWHIVGPSIFSRLATYSMSVVTIAFAGHLGDLELAAISIANNVIVAFNFGLLLGMASALETLCGQAFGAKK  105 (476)
Q Consensus        26 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~i~~lg~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~~~~~  105 (476)
                      +..++..|++++.++|..++++...+.+.+|+.+++|+|++++|+++.+.++..+ ...+..|++.+..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3457889999999999999999999999999999999999999999999999887 677889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHccchhHHH
Q 011857          106 YYMLGVYMQRSWIVLFTCCVLLLPLYLFASPLLKLFGQPNDVAELSATVSMWMLPLHFSFAFQFPLQRFLQCQLKTMAVA  185 (476)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  185 (476)
                      +++.++.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++..++.++..+....++.+|+.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877667788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-c---CCccchHHHHHHHHHHHHHHHHHHHHHhccccc--c-cCCCcHHhHhcHHHHHHH
Q 011857          186 WVSLVALLVHIFVSWLFVYK-M---QLGLIATIHILNFSWWVLVFGLFGYVVFGGCPL--T-WTGFSAEAFSGLWEFVKL  258 (476)
Q Consensus       186 ~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~  258 (476)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.++++...  + ++++...+++.+|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   689999999999999999998888877652211  1 122223346788999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 011857          259 SAASGVMLCLENWYYRILMLMTGNLPNPKLAVDALSICMTINGWEIMIPFAFLAGTGVRVANELGAGNGKGAKFATIVSV  338 (476)
Q Consensus       259 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  338 (476)
                      |.|.++++..+.+...+++.++++++  ++++++|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999996  7789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhcCcchhhHHHHHHHHHHhh
Q 011857          339 VTSSLIGLFFWLLIMIYHKEIALIFTSSEVILQAVNELSILLAFTILLNSIQPVFSGVAVGSGWQSYVAYVNLGTYYFVG  418 (476)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  418 (476)
                      ++.+.++++.++++.++++++..+|.+|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999988999


Q ss_pred             HHHHHHHHHH----hc-CCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 011857          419 VPLGFLMGWV----FH-QGVKGIWLGMIFGGTAVQTLILAVITMRC  459 (476)
Q Consensus       419 i~l~~~l~~~----~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~~  459 (476)
                      +|+++++...    ++ +|..|+|+++. +++.+..++..++++|+
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999944    34 99999999999 99999998777666654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00