Citrus Sinensis ID: 011864

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MPAQKRSLQESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQKDDEEVEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQSR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccEEcccccHHHHHHccccccccEEEEEEEcccccccccccccccHHHHHHcccccHHHHcccccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHcccccccHHHHHcHccccccccccccccccHHcccccccHHHHcccccccHHHcccccccccccccccccccccccccccEEEEEcHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccEEEccccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccccccccccccEcccccccEEEEEEEEccccccccccccccccccHHHHccccHHHHcccccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
mpaqkrslqeshhanngeqlqgeEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEedqkddeevegegdeedeeneddsegpssdtsgekpefvfvelpeirkdvqcpiclgiiKKTRTVMECLHRFCRECIDKsmrlgnnecpacrthcasrrslrddpnydALISALypdidkyeEEELAFHEEERTRNKQIQASIAKIFQRQSEALvkrrtpgkdtaspfmtrpqrnprtahlrrrrnsrgtehqgsednedenddnggkdsssndersaevrprrrkrrsgirssqpsssaansdggciendlevgresrgispglvwnpemlawgrggtrsntrhgsasgcnskssrsTRLNKLVEYLRSLQENNDELDVRLMLVSAdtqcapslqqpylccqpslsvkqlcetplQAEEVEILMVKERldakgnqstpipttdqlqILEGQETLaglrvnhtsnTDHLILAYRQKQSR
Flexible Loop (DISEMBL)
mpaqkrslqeshhanngeQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQqleedqkddeevegegdeedeeneddsegpssdtsgekPEFVFVelpeirkdvqcpiCLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCasrrslrddpnYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQrqsealvkrrtpgkdtaspfmtrpqrnprtahlrrrrnsrgtehqgsednedenddnggkdsssndersaevrprrrkrrsgirssqpsssaansdggcIENDLEVGRESRGISPGLVWNPEMLAWGRGGtrsntrhgsasgcnskssrstRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLdakgnqstpipttdqlqILEGQETLAGLRVNHTSNTDHLILAYRQKQSR
Low Complexity Region (SEG)
MPAQKRSLQESHHANNgeqlqgeeqqrqDSFQQSHAKQSRHerqqlelqqneqqqleedqkddeevegegdeedeeneddsegpssdTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYeeeelafheeeRTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQgsednedenddnggkdsssndersaevrprrrkrrsgirssqpsssaansDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQSR
Disordered region (IsUnstruct)
**********************************************************************************************FVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYE******************************************************************************************************************************************ISPGLVWNPEMLAWG****************************LVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKE******************QILEGQETLAGLRVNHTSNTDHLILAY******
Disordered Region (DISOPRED)
****************************************************************************************************PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELA**********************************************************************************************************************************************************************************************LDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVK**********************EGQETLAGLRVNHTSNTDHLILAYRQK***
Disordered Region (DISEMBL)
******************************************************************************************EKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELA**********QIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQ************************************************************************GCIENDLEVGRESRGISPGLVWNPEMLAWGRGGT*******************TRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQSR
Disordered Region (DISPRO)
*******************************************************************************************KPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALV**************************************************************************************************V*RESRGISPGLVWNPEMLAWGRG********************STRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLD************DQLQILEGQETLAGLRVNHTSNTDHLILAYRQK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAQKRSLQESHHANNGEQLQGEEQQRQDSFQQSHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRxxxxxxxxxxxxxxxxxxxxxLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCETPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q9FKW0	522	Putative E3 ubiquitin-pro	yes	no	0.810	0.739	0.588	1e-121
Q0WX00	460	Putative E3 ubiquitin-pro	no	no	0.842	0.871	0.509	1e-100
Q7ZWM8	343	E3 ubiquitin-protein liga	N/A	no	0.359	0.498	0.338	9e-23
Q66J69	344	E3 ubiquitin-protein liga	N/A	no	0.331	0.459	0.360	1e-22
Q5R9J5	336	E3 ubiquitin-protein liga	yes	no	0.176	0.25	0.523	2e-22
Q9CQJ4	336	E3 ubiquitin-protein liga	yes	no	0.176	0.25	0.523	2e-22
Q99496	336	E3 ubiquitin-protein liga	yes	no	0.176	0.25	0.523	2e-22
Q4KLY4	308	E3 ubiquitin-protein liga	yes	no	0.176	0.272	0.523	2e-22
Q803I4	336	E3 ubiquitin-protein liga	yes	no	0.161	0.229	0.558	3e-22
Q6MGB6	406	E3 ubiquitin-protein liga	no	no	0.247	0.290	0.430	7e-22

>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2

 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/416 (58%), Positives = 309/416 (74%), Gaps = 30/416 (7%)

Query: 84  PSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN 143
           PSS  SG++ EF+ ++L EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN
Sbjct: 112 PSS-ISGDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN 170

Query: 144 ECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKI 203
           ECPACR HCASRRSLRDDP +DALI+AL+ +ID YEEEELAFHE+E  RNKQIQASIA+I
Sbjct: 171 ECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQI 230

Query: 204 FQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQ--GSEDNEDENDD 261
            QRQSEALVKRR+ GK+ A        R+PR A   RRR +     Q   SE +ED+++D
Sbjct: 231 SQRQSEALVKRRSLGKEAAVLM-----RSPRIASGSRRRRNSRNMEQQNASEAHEDDDND 285

Query: 262 NG---GKDS-SSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRES 315
           +    G+D  SS+DER  EVR ++R++RS  RS+Q PSSS AN ++G C +ND EV R++
Sbjct: 286 DNNNRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDT 345

Query: 316 RGISPGLVWNPEMLAWGRGGTRSNTRHG-SASGCNSKSSRSTRLNKLVEYLR-SLQENND 373
           +GISPGLVWNPE+LAWGRGGTRSNTRHG + SG +SKS R+ R+NKLVEYLR S+  ++ 
Sbjct: 346 KGISPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSV 405

Query: 374 ELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQL-----CETPLQAEEVEILMVKERLD 428
           ELD+ + LVS DT+C P L QPYLCC+P+L VKQL      +  L+ EEVE+L+ + R+ 
Sbjct: 406 ELDIHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRRRVG 465

Query: 429 ---AKGNQSTPIPTT-----DQLQILEGQETLAGLRVNHTSNTD-HLILAYRQKQS 475
              A  N     P +     D++  LE  ETL+ L+++  S+ + HLI+AYR+KQ+
Sbjct: 466 EDAAIENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRKKQT 521

As part of the PRC1-like complex, repress class I KNOX gene expression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana GN=RING1B PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 296/442 (66%), Gaps = 41/442 (9%)

Query: 57  EEDQKDDEEVEGEGDEEDEENED---------------DSEGPSSDTSGE--KPEFVFVE 99
           EED    +E +  GDEED+   D                 E   S ++GE  + E++ V+
Sbjct: 34  EEDPDKMDEKDESGDEEDDVKRDQVEAEDEEALGEEEDSKERSQSSSAGELSESEYMVVD 93

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
           L +I KDVQC ICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECP CR HCASRRSLR
Sbjct: 94  LADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSLR 153

Query: 160 DDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGK 219
           DDPN+DALI+AL+ +IDK+EEEEL F +++  RNKQIQASIA++ QRQS+ALVKR++ GK
Sbjct: 154 DDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVKRKSVGK 213

Query: 220 DTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRP 279
            TA       +        RRRRN R  E   SE N+D++ +  GKDSSS+     E   
Sbjct: 214 GTA----ILSRSRRSGGGSRRRRNCRNIEQDTSEANDDDDQNKRGKDSSSD-----EPCE 264

Query: 280 RRRKRRSGIRSSQPSSSAANSDGGCIENDLEVG--RESRGISPGLVWNPEMLAWGRGGTR 337
           R+RK+RS   ++QPSSS AN++  C  N  E    R+SR ISP LVWN E++AWGRGGTR
Sbjct: 265 RQRKKRS---ATQPSSSNANNNDNCAGNGTEQTHQRDSRVISPVLVWNSELIAWGRGGTR 321

Query: 338 SNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYL 397
           SNTR G+ +   + S R+ RL +LVEYL SL+ N+ ELD+ L LVS DT+   +L +PYL
Sbjct: 322 SNTRQGNNNQ-GAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLLNLHEPYL 380

Query: 398 CCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPIPTTDQLQILEGQETL 452
           C +P+L VKQL E       L+AEEVE+L+ K+     GN++    +T+++Q L+  ET+
Sbjct: 381 CFRPTLLVKQLREYVARHLKLKAEEVELLVSKDGDTVIGNKT----STEKMQSLQDDETV 436

Query: 453 AGLRVNHTSNTDHLILAYRQKQ 474
           A L+V+  S+  ++I+ YR+KQ
Sbjct: 437 AKLKVDCISSNGYMIVVYRRKQ 458

As part of the PRC1-like complex, repress class I KNOX gene expression. PcG PRC1 complex maintains the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b PE=2 SV=2

 Score =  108 bits (270), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 98/213 (46%), Gaps = 42/213 (19%)

Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct: 41  LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 100

Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 220
           N+DALIS +YP  D+YE  ++    +  R  N+Q + +SI +  + Q+            
Sbjct: 101 NFDALISKIYPSRDEYEAHQDRVLAKLSRLHNQQALSSSIEEGLKMQA------------ 148

Query: 221 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 280
                M R QR  +  H      S  T   G EDN D           SN E      P 
Sbjct: 149 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAG----PS 194

Query: 281 RRKRRS--------------GIRSSQPSSSAAN 299
           R++ R+              G+RS  P     N
Sbjct: 195 RKRSRASEDSGAEPDLSHEGGVRSPDPPGGGEN 227

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 92/186 (49%), Gaps = 28/186 (15%)

Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct: 42  LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101

Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQSEALVKRRTPGKD 220
           N+DALIS +YP  D+YE  ++    +  R  N+Q + +SI +  + Q+            
Sbjct: 102 NFDALISKIYPSRDEYEAHQDRVLAKLNRLHNQQALSSSIEEGLKMQA------------ 149

Query: 221 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 280
                M R QR  +  H      S  T   G EDN D           SN E      P 
Sbjct: 150 -----MHRAQRVRKHQH-----ESDNTTFSGGEDNCDSRSHVSNPSVHSNQEAG----PS 195

Query: 281 RRKRRS 286
           R++ R+
Sbjct: 196 RKRSRA 201

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 38  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
           RSLR DPN+DALIS +YP  D+YE
Sbjct: 98  RSLRPDPNFDALISKIYPSRDEYE 121

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. E3 ubiquitin-protein ligase activity is enhanced by BMI1/PCGF4. Acts as the main E3 ubiquitin ligase on histone H2A of the PRC1 complex, while RING1 may rather act as a modulator of RNF2/RING2 activity.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 38  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
           RSLR DPN+DALIS +YP  D+YE
Sbjct: 98  RSLRPDPNFDALISKIYPSRDEYE 121

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. E3 ubiquitin-protein ligase activity is enhanced by BMI1/PCGF4. Acts as the main E3 ubiquitin ligase on histone H2A of the PRC1 complex, while RING1 may rather act as a modulator of RNF2/RING2 activity. Association to the chromosomal DNA is cell-cycle dependent.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 38  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
           RSLR DPN+DALIS +YP  D+YE
Sbjct: 98  RSLRPDPNFDALISKIYPSRDEYE 121

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. E3 ubiquitin-protein ligase activity is enhanced by BMI1/PCGF4. Acts as the main E3 ubiquitin ligase on histone H2A of the PRC1 complex, while RING1 may rather act as a modulator of RNF2/RING2 activity.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 38  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query: 156 RSLRDDPNYDALISALYPDIDKYE 179
           RSLR DPN+DALIS +YP  D+YE
Sbjct: 98  RSLRPDPNFDALISKIYPSRDEYE 121

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. E3 ubiquitin-protein ligase activity is enhanced by BMI1/PCGF4. Acts as the main E3 ubiquitin ligase on histone H2A of the PRC1 complex, while RING1 may rather act as a modulator of RNF2/RING2 activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 55/77 (71%)

Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct: 45  LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 104

Query: 163 NYDALISALYPDIDKYE 179
           N+DALIS +YP  D+YE
Sbjct: 105 NFDALISKIYPSRDEYE 121

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. May be involved in the initiation of both imprinted and random X inactivation. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1 PE=2 SV=2

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)

Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct: 42  LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101

Query: 163 NYDALISALYPDIDKYE-EEELAFHEEERTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
           N+DALIS +YP  ++YE  ++       R  N+Q + +SI +  + Q+      V+R  P
Sbjct: 102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161

Query: 218 GKD 220
           G D
Sbjct: 162 GSD 164

Constitutes one of the E3 ubiquitin-protein ligases that mediate monoubiquitination of 'Lys-119' of histone H2A, thereby playing a central role in histone code and gene regulation. H2A 'Lys-119' ubiquitination gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. Essential component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones, rendering chromatin heritably changed in its expressibility. Compared to RNF2/RING2, it does not have the main E3 ubiquitin ligase activity on histone H2A, and it may rather act as a modulator of RNF2/RING2 activity.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
302143319	568	unnamed protein product [Vitis vinifera]	0.983	0.823	0.637	1e-157
359485403	412	PREDICTED: putative E3 ubiquitin-protein	0.796	0.919	0.739	1e-152
224133478	497	predicted protein [Populus trichocarpa]	0.779	0.746	0.734	1e-143
449463098	495	PREDICTED: putative E3 ubiquitin-protein	0.972	0.935	0.603	1e-141
297740412	433	unnamed protein product [Vitis vinifera]	0.831	0.914	0.650	1e-137
359483484	534	PREDICTED: putative E3 ubiquitin-protein	0.831	0.741	0.648	1e-136
224125396	445	predicted protein [Populus trichocarpa]	0.899	0.961	0.534	1e-128
255553681	342	ring finger protein, putative [Ricinus c	0.676	0.941	0.688	1e-122
224079177	463	predicted protein [Populus trichocarpa]	0.787	0.809	0.622	1e-121
449531613	424	PREDICTED: putative E3 ubiquitin-protein	0.792	0.889	0.630	1e-121

>gi|302143319|emb|CBI21880.3| unnamed protein product [Vitis vinifera]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 327/513 (63%), Positives = 373/513 (72%), Gaps = 45/513 (8%)

Query: 1   MPAQKRSLQESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQ 60
           MPAQKRS+ E+  +   +    EE+      Q  H KQ RH    +E  Q + Q      
Sbjct: 58  MPAQKRSVSENLVSGGVDDDDEEERDEDSLHQHFHRKQPRH----VEPDQVQPQDHHHQH 113

Query: 61  KDDEEVEGEGD--------------------EEDEENEDDSEGPSSDTSGEKPEFVFVEL 100
               + EG                         D    D  E PSS T  EKPEFVFV L
Sbjct: 114 PQLHQEEGYVSFLVFSLLFFFIWISLSLTIGSSDFYFPDSDENPSSSTE-EKPEFVFVGL 172

Query: 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD 160
           P+IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD
Sbjct: 173 PDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD 232

Query: 161 DPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKD 220
           DPNYDALI+ALYPDIDKYEEEELAFHEEE+TRNKQIQASIA+I QRQSEAL ++RT GKD
Sbjct: 233 DPNYDALIAALYPDIDKYEEEELAFHEEEQTRNKQIQASIAQILQRQSEALNRKRTLGKD 292

Query: 221 TASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPR 280
            A PFMTR QRN R A+ RRR+N RG++ QGS+DNEDEND++GGK SSS +ERS EV+ R
Sbjct: 293 IAGPFMTRSQRNYRNAYSRRRKNGRGSDLQGSDDNEDENDNDGGKGSSSAEERSTEVKRR 352

Query: 281 RRKRRSGIRSSQPSSSA-ANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSN 339
           R KRR+GIR  QPSSS+ ANSDGGCIENDLEV RESRG SPGLVWNPEMLAWGRGG RS+
Sbjct: 353 RYKRRAGIRLIQPSSSSVANSDGGCIENDLEVNRESRGFSPGLVWNPEMLAWGRGGARSH 412

Query: 340 TRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCC 399
           TRHGS+SGCN KS+RSTRL+KLV+YLRSL EN++ELDV LML+S D +  PSLQ+PYLCC
Sbjct: 413 TRHGSSSGCNHKSARSTRLSKLVDYLRSLGENDNELDVHLMLISLDKESTPSLQEPYLCC 472

Query: 400 QPSLSVKQLCE-----TPLQAEEVEILMVK---ERLDAKGNQSTPI-----------PTT 440
           +P+LSV+ LCE     TPL+AEEVEIL+VK          N ST +           P+ 
Sbjct: 473 RPTLSVRHLCEYVALQTPLRAEEVEILVVKGCHNDYQPFPNPSTSVDDLNPDPIVIDPSK 532

Query: 441 DQLQILEGQETLAGLRVNHTSNTDHLILAYRQK 473
           D+LQILEGQETL GL+ N TS  + L+LAYRQK
Sbjct: 533 DELQILEGQETLVGLQANGTSCRNQLVLAYRQK 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485403|ref|XP_002274885.2| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 295/399 (73%), Positives = 333/399 (83%), Gaps = 20/399 (5%)

Query: 95  FVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 154
           FVFV LP+IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS
Sbjct: 11  FVFVGLPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 70

Query: 155 RRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKR 214
           RRSLRDDPNYDALI+ALYPDIDKYEEEELAFHEEE+TRNKQIQASIA+I QRQSEAL ++
Sbjct: 71  RRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEQTRNKQIQASIAQILQRQSEALNRK 130

Query: 215 RTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERS 274
           RT GKD A PFMTR QRN R A+ RRR+N RG++ QGS+DNEDEND++GGK SSS +ERS
Sbjct: 131 RTLGKDIAGPFMTRSQRNYRNAYSRRRKNGRGSDLQGSDDNEDENDNDGGKGSSSAEERS 190

Query: 275 AEVRPRRRKRRSGIRSSQPSSSA-ANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGR 333
            EV+ RR KRR+GIR  QPSSS+ ANSDGGCIENDLEV RESRG SPGLVWNPEMLAWGR
Sbjct: 191 TEVKRRRYKRRAGIRLIQPSSSSVANSDGGCIENDLEVNRESRGFSPGLVWNPEMLAWGR 250

Query: 334 GGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQ 393
           GG RS+TRHGS+SGCN KS+RSTRL+KLV+YLRSL EN++ELDV LML+S D +  PSLQ
Sbjct: 251 GGARSHTRHGSSSGCNHKSARSTRLSKLVDYLRSLGENDNELDVHLMLISLDKESTPSLQ 310

Query: 394 QPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVK---ERLDAKGNQSTPI-------- 437
           +PYLCC+P+LSV+ LCE     TPL+AEEVEIL+VK          N ST +        
Sbjct: 311 EPYLCCRPTLSVRHLCEYVALQTPLRAEEVEILVVKGCHNDYQPFPNPSTSVDDLNPDPI 370

Query: 438 ---PTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQK 473
              P+ D+LQILEGQETL GL+ N TS  + L+LAYRQK
Sbjct: 371 VIDPSKDELQILEGQETLVGLQANGTSCRNQLVLAYRQK 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133478|ref|XP_002328052.1| predicted protein [Populus trichocarpa] gi|222837461|gb|EEE75840.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/392 (73%), Positives = 322/392 (82%), Gaps = 21/392 (5%)

Query: 91  EKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
           EKPEFVFVELP+IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR+GNNECPACRT
Sbjct: 115 EKPEFVFVELPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRT 174

Query: 151 HCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEA 210
           HCASRRSLRDDPNYDALI+ALYPDIDKYEEEELAFHEEE TRNKQIQASIA+I QRQSEA
Sbjct: 175 HCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEMTRNKQIQASIAQIIQRQSEA 234

Query: 211 LVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSN 270
           LVKRRT GK++            R    RRRRNSR ++ QGSED EDENDDN GKDSSS 
Sbjct: 235 LVKRRTMGKESTF------MTRTRRTITRRRRNSRSSDFQGSEDIEDENDDNIGKDSSSA 288

Query: 271 DERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLA 330
           DERS EVR RR KRR     SQPSSSA NS+GG  ENDL+  RE+RG+SPGL WN EMLA
Sbjct: 289 DERSTEVRHRRPKRR---WPSQPSSSAVNSEGGGAENDLDSNRENRGLSPGLAWNTEMLA 345

Query: 331 WGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAP 390
           WGRGGTRS+TR+G+ SGCN+K+SR+TRL+KLVEYLRSL E NDELD+ L L+S   Q  P
Sbjct: 346 WGRGGTRSHTRYGNPSGCNNKNSRNTRLSKLVEYLRSLDEKNDELDIHLKLISLGNQSTP 405

Query: 391 SLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVK---ERLDAKGNQSTPIPTTDQ 442
           SLQQPYLCC+PSLSVK LCE     T LQAEEVE+L++K   E L AK +Q   IP  D+
Sbjct: 406 SLQQPYLCCRPSLSVKHLCEYVAHQTTLQAEEVELLLIKGKAENLSAKHSQ---IP-MDE 461

Query: 443 LQILEGQETLAGLRVNHTSNTDHLILAYRQKQ 474
           LQIL+GQET+AGL+ + +S+ DHLILAYRQK+
Sbjct: 462 LQILKGQETVAGLKASCSSSRDHLILAYRQKE 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463098|ref|XP_004149271.1| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Cucumis sativus]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 303/502 (60%), Positives = 357/502 (71%), Gaps = 39/502 (7%)

Query: 1   MPAQKRSLQESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQ-------QLELQQNEQ 53
           MPA KRS  ++ H          E  R   F    AKQSR ER+       + E ++  +
Sbjct: 1   MPAHKRSWSDTVHG---------EDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQRE 51

Query: 54  QQLEEDQKDDEEVEGEGDEEDEE--NEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPI 111
           +QL+E Q+ DE  E +  ++ EE   + DSEG  S +S EKPEF+FVEL  IRKDVQCPI
Sbjct: 52  EQLKEGQRVDEGEEEKQRQQLEEATGDRDSEGTQSSSSEEKPEFIFVELSGIRKDVQCPI 111

Query: 112 CLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL 171
           CLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI+AL
Sbjct: 112 CLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAL 171

Query: 172 YPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQR 231
           YPDIDKYEEEEL FHEEER RNKQIQ SIA+IFQRQSEAL K+R  GKDTA   +TR +R
Sbjct: 172 YPDIDKYEEEELTFHEEERNRNKQIQESIAQIFQRQSEALSKKRILGKDTAGVILTRSRR 231

Query: 232 NPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSS 291
           N R  HL RR+N RG E  G EDN+D++D+N GKDSSS DER  EVR RR+KR   +RSS
Sbjct: 232 NHRNVHL-RRQNGRGDEVSGYEDNDDDDDNNEGKDSSSADERFTEVRQRRKKRHPTVRSS 290

Query: 292 QPSSSAANSDG--GCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCN 349
           QPSSS AN D   GC E+DL++ RE+R +SPGLV N EML WGRGG RSN+RHGSA G  
Sbjct: 291 QPSSSIANIDSGDGCAESDLDMSRENRTVSPGLVLNTEMLGWGRGGVRSNSRHGSAGGSG 350

Query: 350 SKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLC 409
           +KSSRS+RL KL +YLR L+ENN+ELDV L+L+S D +  PSLQQP+L C+PSL+VK L 
Sbjct: 351 NKSSRSSRLMKLAKYLRGLEENNNELDVHLLLISVDKESTPSLQQPHLYCRPSLTVKHLR 410

Query: 410 E-----TPLQAEEVEILMVKERLDAKGNQSTPI-------------PTTDQLQILEGQET 451
           E     TPLQA++VEIL +K R      QSTP              P   +LQ LEG+  
Sbjct: 411 EYVSRKTPLQADDVEILSLKGRPRTSNEQSTPSASISIDGMSLVFDPLKYELQSLEGEIF 470

Query: 452 LAGLRVNHTSNTDHLILAYRQK 473
           LAGL+ + T + D LIL YR+K
Sbjct: 471 LAGLQSDCTYSRDLLILGYRRK 492

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740412|emb|CBI30594.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/412 (65%), Positives = 322/412 (78%), Gaps = 16/412 (3%)

Query: 76  ENEDDSEGPSSDTS-----GEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFC 130
           E  +D +G  SD S     GEK EFV V+L EIRK+VQCPICLGII+KTRTVMECLHRFC
Sbjct: 25  EPPEDGDGYESDRSPSWSNGEKDEFVIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFC 84

Query: 131 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEER 190
           RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI+ALYPDIDKYE+EELAFHEEE+
Sbjct: 85  RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELAFHEEEK 144

Query: 191 TRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQ 250
           TRNKQIQASIA+  +RQSEAL ++RT  K TA+ F  R Q N R      RRN R T+  
Sbjct: 145 TRNKQIQASIAQTLRRQSEALGRKRTTAKATAAAFARRSQGNYRRG----RRNYRATDLL 200

Query: 251 GSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLE 310
           GSED+ED N ++GGKDSSS ++ SAEV+P+R +R  G+R SQPSS AAN+DGG  ENDLE
Sbjct: 201 GSEDDEDANGNDGGKDSSSAEDHSAEVKPKRSRRWGGVRFSQPSSGAANADGGGDENDLE 260

Query: 311 VGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQE 370
             RE+ G S GLV N E+LAWG+GG RS+TR+GS SG N K++RS+RL+KLV+YLR+L +
Sbjct: 261 PNREAMGASAGLVGNSEILAWGKGGMRSHTRYGSVSGGNGKNARSSRLSKLVDYLRNLDQ 320

Query: 371 NNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLC-----ETPLQAEEVEILMVKE 425
           N+DELD+ LMLVS D Q  PSLQ PYLCC+P+LSV+ LC     +TPL A+EVEIL++KE
Sbjct: 321 NDDELDIHLMLVSLDEQRIPSLQTPYLCCRPTLSVRHLCQYVALQTPLLADEVEILVIKE 380

Query: 426 RLDA--KGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQS 475
           +L      N S+P P +D+LQ+LE QETLA L+    +N  HL+LAYR+K S
Sbjct: 381 QLSKLNPSNSSSPDPCSDRLQVLEAQETLAVLKTMRNANQSHLLLAYRRKLS 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483484|ref|XP_002273941.2| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/412 (64%), Positives = 322/412 (78%), Gaps = 16/412 (3%)

Query: 76  ENEDDSEGPSSDTS-----GEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFC 130
           E  +D +G  SD S     GEK EFV V+L EIRK+VQCPICLGII+KTRTVMECLHRFC
Sbjct: 126 EPPEDGDGYESDRSPSWSNGEKDEFVIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFC 185

Query: 131 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEER 190
           RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI+ALYPDIDKYE+EELAFHEEE+
Sbjct: 186 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEQEELAFHEEEK 245

Query: 191 TRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQ 250
           TRNKQIQASIA+  +RQSEAL ++RT  K TA+ F  R Q      + R RRN R T+  
Sbjct: 246 TRNKQIQASIAQTLRRQSEALGRKRTTAKATAAAFARRSQ----GNYRRGRRNYRATDLL 301

Query: 251 GSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLE 310
           GSED+ED N ++GGKDSSS ++ SAEV+P+R +R  G+R SQPSS AAN+DGG  ENDLE
Sbjct: 302 GSEDDEDANGNDGGKDSSSAEDHSAEVKPKRSRRWGGVRFSQPSSGAANADGGGDENDLE 361

Query: 311 VGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQE 370
             RE+ G S GLV N E+LAWG+GG RS+TR+GS SG N K++RS+RL+KLV+YLR+L +
Sbjct: 362 PNREAMGASAGLVGNSEILAWGKGGMRSHTRYGSVSGGNGKNARSSRLSKLVDYLRNLDQ 421

Query: 371 NNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLC-----ETPLQAEEVEILMVKE 425
           N+DELD+ LMLVS D Q  PSLQ PYLCC+P+LSV+ LC     +TPL A+EVEIL++KE
Sbjct: 422 NDDELDIHLMLVSLDEQRIPSLQTPYLCCRPTLSVRHLCQYVALQTPLLADEVEILVIKE 481

Query: 426 RLDA--KGNQSTPIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQS 475
           +L      N S+P P +D+LQ+LE QETLA L+    +N  HL+LAYR+K S
Sbjct: 482 QLSKLNPSNSSSPDPCSDRLQVLEAQETLAVLKTMRNANQSHLLLAYRRKLS 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125396|ref|XP_002329795.1| predicted protein [Populus trichocarpa] gi|222870857|gb|EEF07988.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/486 (53%), Positives = 330/486 (67%), Gaps = 58/486 (11%)

Query: 1   MPAQKRSLQESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQ 60
           MPAQKRS          E LQ E+    D+            RQQ +   N  +Q +E +
Sbjct: 1   MPAQKRSY---------ETLQKED----DALL----------RQQQDHTNNNHEQKQEPR 37

Query: 61  KDDEEVEGEGDEEDEENEDDSEGPSSDTSGE-KPEFVFVELPEIRKDVQCPICLGIIKKT 119
            D ++  G         E D   PSS+ + + K E+V V+L EIRK+VQCPICLGII+KT
Sbjct: 38  SDIDDDGGV--------ESDRSQPSSNINEDVKEEYVVVKLSEIRKEVQCPICLGIIRKT 89

Query: 120 RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYE 179
           RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI+ALYPDIDKYE
Sbjct: 90  RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYE 149

Query: 180 EEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLR 239
           EEELAF E+E+ RNK+IQA+IA+ F RQ+EAL ++R+  K TA+ F  R     R AH R
Sbjct: 150 EEELAFQEDEKARNKEIQATIAQTFDRQAEALSRKRSTAKATAAVFARRTPSRFRDAHSR 209

Query: 240 RRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQPSSSAAN 299
            RRN R  E QGS+DNED N   GGKDSSS DE SAEV+P+R +R          S+A N
Sbjct: 210 GRRNYRIAELQGSDDNEDAN-GGGGKDSSSTDEHSAEVKPKRYRR---------CSAAFN 259

Query: 300 SDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSASGCNSKSSRSTRLN 359
           +DG   END EV +ES G S GL+ + E LAWG+ G RS+TR+GSA+G N K++R++R++
Sbjct: 260 ADGSGGENDSEVNKESVGASAGLISSSERLAWGKNGMRSHTRYGSANGSNVKNARNSRIS 319

Query: 360 KLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLC-----ETPLQ 414
           KL +YLR+L EN++ELD+ LMLVS D Q  PSLQ+PYLCC+P+LS+K LC     +T LQ
Sbjct: 320 KLADYLRNLDENDNELDINLMLVSFDEQRVPSLQRPYLCCRPTLSIKSLCQYVAFQTSLQ 379

Query: 415 AEEVEILMVKE---RLDAKGNQSTPI-------PTTDQLQILEGQETLAGLRVNHTSNTD 464
           A EVEI +V++   +LD   + S+P+       P  D+LQ+LE  ETL GL+ N+  +  
Sbjct: 380 ANEVEIYLVQDMNSKLDFSLSMSSPVSRHGIIDPCKDKLQVLEQHETLGGLKTNNCIHG- 438

Query: 465 HLILAY 470
           HL+ ++
Sbjct: 439 HLVSSF 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553681|ref|XP_002517881.1| ring finger protein, putative [Ricinus communis] gi|223542863|gb|EEF44399.1| ring finger protein, putative [Ricinus communis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 256/372 (68%), Positives = 282/372 (75%), Gaps = 50/372 (13%)

Query: 123 MECLHRFCRECIDKSMRLG-----------------NNECPACRTHCASRRSLRDDPNYD 165
           MECLHRFCRECIDKSMRLG                 NNECPACRTHCASRRSLRDDPNYD
Sbjct: 1   MECLHRFCRECIDKSMRLGYVRKILSYLSVIMSLLGNNECPACRTHCASRRSLRDDPNYD 60

Query: 166 ALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALVKRRTPGKDTASPF 225
           ALI+ALYPDIDKYEEEELAFHEEERTRNKQIQASIA+IFQRQSEAL K+RT GK+T  PF
Sbjct: 61  ALIAALYPDIDKYEEEELAFHEEERTRNKQIQASIAQIFQRQSEALAKKRTMGKETTGPF 120

Query: 226 MTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDERSAEVRPRRRKRR 285
           +TR QRN RT   RRRRNSRGTE+QGSED E+ENDDNGGKDSSS DERS EVR RRRKRR
Sbjct: 121 VTRSQRNHRTVPSRRRRNSRGTEYQGSEDIEEENDDNGGKDSSSTDERSTEVRQRRRKRR 180

Query: 286 SGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGSA 345
            GIR SQPSSSA+N +GG IENDLE GRE+RGISPGLVWN EMLAWGRGG RS+TRHG+A
Sbjct: 181 PGIRPSQPSSSASNLEGGSIENDLEAGRENRGISPGLVWNTEMLAWGRGGARSHTRHGNA 240

Query: 346 SGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSV 405
           SGCN+K+SRSTRL+KLVEYLRSL+E NDE                     Y+  Q     
Sbjct: 241 SGCNNKNSRSTRLSKLVEYLRSLEEKNDE---------------------YIAHQ----- 274

Query: 406 KQLCETPLQAEEVEILMVKERLDAKGNQST--PIPTTDQLQILEGQETLAGLRVNHTSNT 463
                TPLQAEEVEIL+VK       N ST  P    ++LQIL+GQETLAGL+ N + + 
Sbjct: 275 -----TPLQAEEVEILLVKGAHQPDDNISTLHPPILMEELQILKGQETLAGLKANSSPSR 329

Query: 464 DHLILAYRQKQS 475
           D LILAYRQK++
Sbjct: 330 DRLILAYRQKEA 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079177|ref|XP_002305782.1| predicted protein [Populus trichocarpa] gi|222848746|gb|EEE86293.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/397 (62%), Positives = 302/397 (76%), Gaps = 22/397 (5%)

Query: 92  KPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151
           K E+V V+L EIRK+VQCPICLGII+KTRTVMECLHRFCRECIDKSMRLGNNECPACRTH
Sbjct: 73  KEEYVVVKLSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 132

Query: 152 CASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEAL 211
           CASRRSLRDDPNYDALISALYPDIDKYEEEELAF EEE+ RNKQIQA+IA+ F RQ+EAL
Sbjct: 133 CASRRSLRDDPNYDALISALYPDIDKYEEEELAFQEEEKARNKQIQATIAQTFHRQAEAL 192

Query: 212 VKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSND 271
            +++T  K TA+ F  R     R AH R RRN R    QGS+DNED N D GGKDSSS D
Sbjct: 193 SRKKTTAKVTAAAFARRTPSRFRDAHSRGRRNYRMAGFQGSDDNEDANGD-GGKDSSSAD 251

Query: 272 ERSAEVRPRRRKRRSGIRSSQPSSSAANSDGGCIENDLEVGRESRGISPGLVWNPEMLAW 331
           E SAEV+P+R K+ +G R     S+A N+DGG  END EV +ES G S GLV + E LAW
Sbjct: 252 EHSAEVKPKRCKKWAGAR-----SAAVNADGGGDENDSEVNKESVGGSSGLVGSSERLAW 306

Query: 332 GRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPS 391
           G+ G RS+TR+GSA+G N K++RS+R++KL +YLR+L+ N++ELD+ LMLVS D Q  PS
Sbjct: 307 GKNGMRSHTRYGSANGSNVKNARSSRISKLADYLRNLEGNDNELDINLMLVSFDEQRVPS 366

Query: 392 LQQPYLCCQPSLSVKQLC-----ETPLQAEEVEILMVKE---RLDAKGNQSTPI------ 437
           LQ+PYLCC+P+LS+ +LC     +T LQA EVEI +V+E   ++D   + STPI      
Sbjct: 367 LQRPYLCCRPTLSINKLCQYVAFQTSLQANEVEIYLVREMNSKVDFSISMSTPISKPGII 426

Query: 438 -PTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQK 473
            P  D+LQ+LE QETL  L+ N+  +  +L+LAYR+K
Sbjct: 427 DPCKDKLQVLEEQETLGRLKTNNFIH-GYLLLAYRKK 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531613|ref|XP_004172780.1| PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Cucumis sativus]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 253/401 (63%), Positives = 296/401 (73%), Gaps = 24/401 (5%)

Query: 93  PEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152
           P F+   + +++K        GIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC
Sbjct: 25  PAFL---INQVKKLATLLTLTGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 81

Query: 153 ASRRSLRDDPNYDALISALYPDIDKYEEEELAFHEEERTRNKQIQASIAKIFQRQSEALV 212
           ASRRSLRDDPNYDALI+ALYPDIDKYEEEEL FHEEER RNKQIQ SIA+IFQRQSEAL 
Sbjct: 82  ASRRSLRDDPNYDALIAALYPDIDKYEEEELTFHEEERNRNKQIQESIAQIFQRQSEALS 141

Query: 213 KRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGSEDNEDENDDNGGKDSSSNDE 272
           K+R  GKDTA   +TR +RN R  HL RR+N RG E  G EDN+D++D+N GKDSSS DE
Sbjct: 142 KKRILGKDTAGVILTRSRRNHRNVHL-RRQNGRGDEVSGYEDNDDDDDNNEGKDSSSADE 200

Query: 273 RSAEVRPRRRKRRSGIRSSQPSSSAANSDG--GCIENDLEVGRESRGISPGLVWNPEMLA 330
           R  EVR RR+KR   +RSSQPSSS AN D   GC E+DL++ RE+R +SPGLV N EML 
Sbjct: 201 RFTEVRQRRKKRHPTVRSSQPSSSIANIDSGDGCAESDLDMSRENRTVSPGLVLNTEMLG 260

Query: 331 WGRGGTRSNTRHGSASGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAP 390
           WGRGG RSN+RHGSA G  +KSSRS+RL KL +YLR L+ENN+ELDV L+L+S D +  P
Sbjct: 261 WGRGGVRSNSRHGSAGGSGNKSSRSSRLMKLAKYLRGLEENNNELDVHLLLISVDKESTP 320

Query: 391 SLQQPYLCCQPSLSVKQLCE-----TPLQAEEVEILMVKERLDAKGNQSTPI-------- 437
           SLQQP+L C+PSL+VK L E     TPLQA++VEIL +K R      QSTP         
Sbjct: 321 SLQQPHLYCRPSLTVKHLREYVSRKTPLQADDVEILSLKGRPRTSNEQSTPSASISIDGM 380

Query: 438 -----PTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQK 473
                P   +LQ LEG+  LAGL+ + T + D LIL YR+K
Sbjct: 381 SLVFDPLKYELQSLEGEIFLAGLQSDCTYSRDLLILGYRRK 421

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2158705	525	RING1A "RING 1A" [Arabidopsis	0.367	0.333	0.523	1.2e-81
UNIPROTKB|A1YER5	377	RING1 "E3 ubiquitin-protein li	0.247	0.312	0.422	6e-22
UNIPROTKB|A1YFY1	377	RING1 "E3 ubiquitin-protein li	0.247	0.312	0.422	6e-22
UNIPROTKB|A2T6X5	377	RING1 "E3 ubiquitin-protein li	0.247	0.312	0.422	6e-22
UNIPROTKB|Q8WMN5	377	RING1 "E3 ubiquitin-protein li	0.247	0.312	0.422	6e-22
UNIPROTKB|E2RFW1	337	RNF2 "Uncharacterized protein"	0.258	0.364	0.416	7e-22
UNIPROTKB|F1S3N6	336	RNF2 "Uncharacterized protein"	0.258	0.366	0.411	7e-22
UNIPROTKB|Q7ZWM8	343	rnf2-b "E3 ubiquitin-protein l	0.222	0.309	0.444	7e-22
UNIPROTKB|F1MUV0	382	RING1 "Uncharacterized protein	0.247	0.308	0.422	7.2e-22
MGI|MGI:1101770	406	Ring1 "ring finger protein 1"	0.254	0.298	0.425	7.6e-22

TAIR|locus:2158705 RING1A "RING 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 100/191 (52%), Positives = 134/191 (70%)

Query:   301 DGGCIENDLEVGRESRGISPGLVWNPEMLAWGRGGTRSNTRHGS-ASGCNSKSSRSTRLN 359
             +G C +ND EV R+++GISPGLVWNPE+LAWGRGGTRSNTRHG+  SG +SKS R+ R+N
Sbjct:   334 NGNCADNDTEVYRDTKGISPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVN 393

Query:   360 KLVEYLRSLQENND-ELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPL 413
             KLVEYLRS  + +  ELD+ + LVS DT+C P L QPYLCC+P+L VKQL E       L
Sbjct:   394 KLVEYLRSSVDGSSVELDIHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHL 453

Query:   414 QAEEVEILMVKERL--DAK-GNQSTPIPTT-----DQLQILEGQETLAGLRVNH-TSNTD 464
             + EEVE+L+ + R+  DA   N     P +     D++  LE  ETL+ L+++  +S+  
Sbjct:   454 KTEEVELLVTRRRVGEDAAIENLPAVTPASAAASKDEMLSLEDNETLSRLKIDFISSHEQ 513

Query:   465 HLILAYRQKQS 475
             HLI+AYR+KQ+
Sbjct:   514 HLIIAYRKKQT 524

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0001709 "cell fate determination" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010076 "maintenance of floral meristem identity" evidence=IMP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IMP

GO:0035102 "PRC1 complex" evidence=IPI

GO:0045814 "negative regulation of gene expression, epigenetic" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

UNIPROTKB|A1YER5 RING1 "E3 ubiquitin-protein ligase RING1" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 260 (96.6 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 52/123 (42%), Positives = 72/123 (58%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:    73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132

Query:   218 GKD 220
             G D
Sbjct:   133 GSD 135

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

UNIPROTKB|A1YFY1 RING1 "E3 ubiquitin-protein ligase RING1" [Pan paniscus (taxid:9597)]

 Score = 260 (96.6 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 52/123 (42%), Positives = 72/123 (58%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:    73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132

Query:   218 GKD 220
             G D
Sbjct:   133 GSD 135

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

UNIPROTKB|A2T6X5 RING1 "E3 ubiquitin-protein ligase RING1" [Pan troglodytes (taxid:9598)]

 Score = 260 (96.6 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 52/123 (42%), Positives = 72/123 (58%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:    73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132

Query:   218 GKD 220
             G D
Sbjct:   133 GSD 135

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

UNIPROTKB|Q8WMN5 RING1 "E3 ubiquitin-protein ligase RING1" [Macaca mulatta (taxid:9544)]

 Score = 260 (96.6 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 52/123 (42%), Positives = 72/123 (58%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    13 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 72

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:    73 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIP 132

Query:   218 GKD 220
             G D
Sbjct:   133 GSD 135

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

UNIPROTKB|E2RFW1 RNF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/125 (41%), Positives = 69/125 (55%)

Query:    96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
             + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct:    38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query:   156 RSLRDDPNYDALISALYPDIDKYXXXXXXXXXXXRTRNKQIQASIAKIFQR-QSEALVKR 214
             RSLR DPN+DALIS +YP  D+Y              N Q QA    I +  + +A+  R
Sbjct:    98 RSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ-QALSHSIEEGLKIQAMNSR 156

Query:   215 RTPGK 219
                GK
Sbjct:   157 LQRGK 161

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0035102 "PRC1 complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0009948 "anterior/posterior axis specification" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1S3N6 RNF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 51/124 (41%), Positives = 66/124 (53%)

Query:    96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
             + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct:    38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97

Query:   156 RSLRDDPNYDALISALYPDIDKYXXXXXXXXXXXRTRNKQIQASIAKIFQRQSEALVKRR 215
             RSLR DPN+DALIS +YP  D+Y              N Q QA    I +      + R 
Sbjct:    98 RSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQ-QALCHSIEEGLKIQAMNRL 156

Query:   216 TPGK 219
               GK
Sbjct:   157 QRGK 160

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0035102 "PRC1 complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0009948 "anterior/posterior axis specification" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q7ZWM8 rnf2-b "E3 ubiquitin-protein ligase RING2-B" [Xenopus laevis (taxid:8355)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 48/108 (44%), Positives = 66/108 (61%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    41 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 100

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS 208
             N+DALIS +YP  D+Y            R  N+Q + +SI +  + Q+
Sbjct:   101 NFDALISKIYPSRDEYEAHQDRVLAKLSRLHNQQALSSSIEEGLKMQA 148

GO:0031519 "PcG protein complex" evidence=ISS

GO:0035102 "PRC1 complex" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

UNIPROTKB|F1MUV0 RING1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 7.2e-22, P = 7.2e-22
 Identities = 52/123 (42%), Positives = 72/123 (58%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    17 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 76

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:    77 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 136

Query:   218 GKD 220
             G D
Sbjct:   137 GSD 139

GO:0048593 "camera-type eye morphogenesis" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0035518 "histone H2A monoubiquitination" evidence=IEA

GO:0035102 "PRC1 complex" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1101770 Ring1 "ring finger protein 1" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 7.6e-22, P = 7.6e-22
 Identities = 54/127 (42%), Positives = 75/127 (59%)

Query:   103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
             +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct:    42 LHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDP 101

Query:   163 NYDALISALYPDIDKYXXXXXXXXXX-XRTRNKQ-IQASIAKIFQRQS---EALVKRRTP 217
             N+DALIS +YP  ++Y            R  N+Q + +SI +  + Q+      V+R  P
Sbjct:   102 NFDALISKIYPSREEYEAHQDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPMP 161

Query:   218 GKD-TAS 223
             G D TA+
Sbjct:   162 GSDQTAT 168

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0001739 "sex chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IGI;IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IGI;IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISO;IDA

GO:0035102 "PRC1 complex" evidence=ISO

GO:0035518 "histone H2A monoubiquitination" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048593 "camera-type eye morphogenesis" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKW0	RNG1A_ARATH	6, ., 3, ., 2, ., -	0.5889	0.8109	0.7394	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-14
smart00184	40	smart00184, RING, Ring finger	1e-11
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-11
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-10
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	5e-09
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	8e-06
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	6e-05
COG5222	427	COG5222, COG5222, Uncharacterized conserved protei	3e-04

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152
           +CPICL   ++   ++ C H FCR CIDK ++ G N CP CRT  
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 20/40 (50%), Positives = 23/40 (57%)

Query: 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
           CPICL    K   ++ C H FCR CI K +  GNN CP C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
           CPICL   K   T++ C H FC +CI   +  GN  CP C
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
           ++++CPICL +++    +  C H FCRECI + ++   ++CP CRT
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVFCRECILRYLK-KKSKCPICRT 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 108 QCPICLGIIKKTRTV--MECLHRFCRECIDKSMRLGNNECPACRTH 151
           +CPICL   +    V  + C H F +EC+DK +R  +N CP CR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRS-SNTCPLCRAP 46

Length = 46

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 80  DSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICL-GIIKKTR-TVMECLHRFCRECIDKS 137
               P++ T G           E  K V+C IC+   IK  R  V+ C HRF   C+DK 
Sbjct: 297 SEAIPTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKW 356

Query: 138 MRLGNNECPACRT 150
           +   +N+CP CRT
Sbjct: 357 LLGYSNKCPVCRT 369

Length = 374

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 97  FVELPEIRKDVQCPICLGII--KKTRTVM-----ECLHRFCRECIDKSMRLGNNECPACR 149
           + +L    KD +C IC+  +  K+ + +       C H FC ECID   +   N CP CR
Sbjct: 165 YEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-WKKEKNTCPVCR 223

Query: 150 T 150
           T
Sbjct: 224 T 224

Length = 238

>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDA 166
           ++CP+C  +++       C H FC ECI  ++   + +CP C                D 
Sbjct: 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK-------------DV 321

Query: 167 LISALYPDIDKYEEEELAFHEEER 190
           L+  L PDIDK  E E A  ++ +
Sbjct: 322 LLDGLTPDIDKKLEVEKALKKQRK 345

Length = 427

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.14
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.09
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.05
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.0
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.0
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.97
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.95
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.91
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.88
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.82
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.8
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.78
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.76
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.76
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.75
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
PHA02929	238	N1R/p28-like protein; Provisional	98.73
KOG2660	331	consensus Locus-specific chromosome binding protei	98.7
PHA02926	242	zinc finger-like protein; Provisional	98.53
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.49
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.46
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.44
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.42
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.41
PF14634	44	zf-RING_5: zinc-RING finger domain	98.4
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.4
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.28
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.14
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.8
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.79
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.78
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.77
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
COG5152	259	Uncharacterized conserved protein, contains RING a	97.75
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.71
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.57
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.32
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.3
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.14
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.06
KOG4739	233	consensus Uncharacterized protein involved in syna	96.94
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.93
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.87
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.86
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.73
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.69
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.62
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.46
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.41
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.23
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.19
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	96.01
PF04641	260	Rtf2: Rtf2 RING-finger	95.9
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	95.85
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.7
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.37
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.23
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	95.1
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.1
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.0
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	94.9
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.88
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.87
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.71
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.53
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	94.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.33
KOG3002	299	consensus Zn finger protein [General function pred	94.15
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.82
KOG4445	368	consensus Uncharacterized conserved protein, conta	93.44
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.89
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	92.55
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.0
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.0
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.83
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.41
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	91.39
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	91.33
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	90.89
KOG0298	1394	consensus DEAD box-containing helicase-like transc	90.22
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	89.94
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	89.91
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	88.98
PHA03096	284	p28-like protein; Provisional	88.68
KOG3039	303	consensus Uncharacterized conserved protein [Funct	85.46
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	85.09
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	84.9
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	84.3
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	83.55
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	82.61
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	81.4
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	81.22
PHA02862	156	5L protein; Provisional	80.61
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	80.56

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-34  Score=288.26  Aligned_cols=335  Identities=41%  Similarity=0.598  Sum_probs=263.1

Q ss_pred             eecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864           96 VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus        96 ~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      +.+.+..+...+.|+||++++...+++..|+|.||..||...+..+++.||.||+.+.+.+.+++++.+..+|.++++.+
T Consensus        33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~si  112 (381)
T KOG0311|consen   33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPSI  112 (381)
T ss_pred             heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhccH
Confidence            77888899999999999999999998888999999999999999888999999999999999999999999999999999


Q ss_pred             hhhHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCCCCccccCCCCCCCCCCCCCC--
Q 011864          176 DKYEEEELAFHEEERTR-NKQIQASIAKIFQRQSEALVKRRTPGKDTASPFMTRPQRNPRTAHLRRRRNSRGTEHQGS--  252 (476)
Q Consensus       176 ~~~ee~l~~fceeeq~~-r~~lq~~l~~~l~~q~e~l~k~~~~~k~~~~~~k~r~~~n~~~~~~R~Rr~~r~~~~~g~--  252 (476)
                      ..++.....|.+.+... ++.|+..+++.++.+...+.+++...+-       ++.+.  ..+++++++.+.+.....  
T Consensus       113 e~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~-------~s~r~--g~Gs~~~gn~r~~~~s~~~a  183 (381)
T KOG0311|consen  113 EEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL-------RSIRW--GGGSRRRGNVRNVEQSKKSA  183 (381)
T ss_pred             HHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc-------ccccc--cCCCCCCCCcccchhccccC
Confidence            99999888888876664 4469999999999999998887764332       22222  335677777777543222  


Q ss_pred             --CCCCCCCCCCCCCCCCCCcccccccchhhhhccCCCCCCC-CCCCCCC-CCCCCCcccccccccccCCCCCCccCccc
Q 011864          253 --EDNEDENDDNGGKDSSSNDERSAEVRPRRRKRRSGIRSSQ-PSSSAAN-SDGGCIENDLEVGRESRGISPGLVWNPEM  328 (476)
Q Consensus       253 --~~~~~~~~~~~~~~~s~~~~~~~~~~~~r~rr~~~~r~~q-~~ss~~~-~~~~~~~~~~~~~re~~~~~~~~~~~~~~  328 (476)
                        +++...+.++.++++++ |+.    ....+.-++..+..+ ++++.++ .++.++.+|.+..+++.++++++||+.|.
T Consensus       184 ~~ea~~~~~~n~rg~~ss~-d~~----~~~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~i~r~~v~~~e~  258 (381)
T KOG0311|consen  184 PKEADGNDDENDRGKDSSS-DEL----MDFPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSSTISRTLVWNRES  258 (381)
T ss_pred             CccCCCccccccccccccc-ccc----ccccccccccccccCCCCccccccCCCcccCCCCccccccccccccccccccc
Confidence              33333444445555544 444    223333334444344 5666666 67888888888889999999999999999


Q ss_pred             ccccCCCCCcCccCCCC-CCCCCCCccchhHHHHHHHHHhhhccCCceeEEEEEeecCCCCCCCCCCCccccCCCchhhh
Q 011864          329 LAWGRGGTRSNTRHGSA-SGCNSKSSRSTRLNKLVEYLRSLQENNDELDVRLMLVSADTQCAPSLQQPYLCCQPSLSVKQ  407 (476)
Q Consensus       329 ~~~g~~~~rs~~r~g~~-~~~~~~~~r~~~~~k~~~~l~~~~~~~~e~~~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~  407 (476)
                      .+||++|+++.||+|++ +|+-.+.+|+++..++++|+...+...+++.-                              
T Consensus       259 ~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~~~~~------------------------------  308 (381)
T KOG0311|consen  259 SESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSNIKVA------------------------------  308 (381)
T ss_pred             chhccCCccccccccccccccchhhhhHHHHHHhhhhccccccccccccc------------------------------
Confidence            99999999999999996 66767778999999999999966666655441                              


Q ss_pred             hhccCCCccceEEEEEecccc--cCCCCCC--CCCChhhhhhcccccccccccccccCCCCcchhhhhhhhc
Q 011864          408 LCETPLQAEEVEILMVKERLD--AKGNQST--PIPTTDQLQILEGQETLAGLRVNHTSNTDHLILAYRQKQS  475 (476)
Q Consensus       408 l~~~~~~~~e~e~~~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~l~~~y~~k~~  475 (476)
                       -+..+..+++|+++.....-  .+.+.-+  ..+.++++.+|++.+||+.++.+||..++.++|-|..|.+
T Consensus       309 -~~~~~~~~~~~~~~~~~~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m~l~~~~kk~  379 (381)
T KOG0311|consen  309 -KKKPLKREEVELLVELIHPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPMELSYHEKKI  379 (381)
T ss_pred             -ccCCcccccccccccccccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccchhhhhchhcc
Confidence             14678888888888777211  2222111  1389999999999999999999999999999999998865

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.14  E-value=2.8e-11  Score=87.90  Aligned_cols=39  Identities=38%  Similarity=1.092  Sum_probs=31.0

Q ss_pred             ccccccccccceeecccCCccchhHHHhhhhcCC---CCCCCc
Q 011864          109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGN---NECPAC  148 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~---~~CP~C  148 (476)
                      ||||+++|.+||+ ++|||+||..||..|+....   ..||.|
T Consensus         1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999999998 99999999999999998432   479987

>smart00504 Ubox Modified RING finger domain

Probab=99.09  E-value=8.4e-11  Score=91.56  Aligned_cols=61  Identities=18%  Similarity=0.299  Sum_probs=53.4

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHH
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS  169 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~  169 (476)
                      ++.||||.+++.+||. ++|||+||..||..|+.. ...||.|+..+.. .++.++..+.+.|.
T Consensus         1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~-~~l~~~~~l~~~i~   61 (63)
T smart00504        1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH-EDLIPNLALKSAIQ   61 (63)
T ss_pred             CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh-hhceeCHHHHHHHH
Confidence            3689999999999996 899999999999999985 6789999999865 66888888877764

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.05  E-value=1.3e-10  Score=121.59  Aligned_cols=70  Identities=23%  Similarity=0.578  Sum_probs=60.2

Q ss_pred             ccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864           99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL  171 (476)
Q Consensus        99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l  171 (476)
                      .+..++..+.|+||+++|..|+. ++|||+||..||..|+.. ...||.|+..+.. ..+..|+.|.++|..+
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~Pvi-tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~   88 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPVL-TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE-SKLRSNWLVSEIVESF   88 (397)
T ss_pred             cccccccccCCCcCchhhhCccC-CCCCCchhHHHHHHHHhC-CCCCCCCCCcccc-ccCccchHHHHHHHHH
Confidence            45667889999999999999995 999999999999999984 4689999999875 4688899888888544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.00  E-value=9.5e-11  Score=91.74  Aligned_cols=63  Identities=29%  Similarity=0.727  Sum_probs=36.4

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      .++..+.|++|.++|..||.+..|.|.||..||...+.   ..||+|..+... ++++.|..|+++|
T Consensus         3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~-qD~~~NrqLd~~i   65 (65)
T PF14835_consen    3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI-QDIQINRQLDSMI   65 (65)
T ss_dssp             HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred             HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHH-HHHHhhhhhhccC
Confidence            35667899999999999998899999999999988765   459999999887 7899999998875

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.00  E-value=2.6e-10  Score=92.39  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      .+.|.||||..+|.+||. ++|||+|++.||..|+..+...||.|+.++.. ..+.+|..|.+.|..+.
T Consensus         2 P~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~-~~l~pn~~Lk~~I~~~~   68 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLSE-SDLIPNRALKSAIEEWC   68 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG-GGSEE-HHHHHHHHHHH
T ss_pred             CcccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc-ccceECHHHHHHHHHHH
Confidence            357899999999999996 89999999999999999767899999999886 67899999988886654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.97  E-value=3.5e-10  Score=107.12  Aligned_cols=50  Identities=30%  Similarity=0.717  Sum_probs=42.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhc---------------CCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL---------------GNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~---------------~~~~CP~CR~~~~~  154 (476)
                      ...+.|+||++.+.+|+. ++|||.||..||..|+..               ....||+||..++.
T Consensus        16 ~~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            346899999999999996 899999999999999852               23589999998865

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.95  E-value=3.9e-10  Score=80.30  Aligned_cols=39  Identities=46%  Similarity=1.157  Sum_probs=34.3

Q ss_pred             ccccccccccceeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864          109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC  148 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~C  148 (476)
                      |+||++.+.+|+.+++|||.||..||..|+.. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999767999999999999999996 6899988

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.91  E-value=3.4e-10  Score=113.70  Aligned_cols=70  Identities=26%  Similarity=0.610  Sum_probs=60.7

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +..+...+.|-||.++|..|+. +||+|+||..||..++. ....||.|+..+.. ..++.++.+..+|..+.
T Consensus        17 lk~lD~lLRC~IC~eyf~ip~i-tpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~E-s~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen   17 LKTLDDLLRCGICFEYFNIPMI-TPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTE-SDLRNNRILDEIVKSLN   86 (442)
T ss_pred             hhhhHHHHHHhHHHHHhcCcee-ccccchHHHHHHHHHhc-cCCCCCceecccch-hhhhhhhHHHHHHHHHH
Confidence            3445677899999999999995 99999999999999998 45889999999987 67999999999886654

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.2e-09  Score=108.30  Aligned_cols=49  Identities=29%  Similarity=0.649  Sum_probs=43.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +....|.||++...+|.. +||||.||+.||..|... ...||+||..+..
T Consensus       237 ~a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~p  285 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQP  285 (293)
T ss_pred             CCCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCC
Confidence            446799999999999996 999999999999999984 4779999998876

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.4e-09  Score=104.90  Aligned_cols=49  Identities=29%  Similarity=0.717  Sum_probs=43.6

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~  154 (476)
                      ..+.|.||++.-.+||. +.|||.||+.||.+|+..  +...||+|+..++.
T Consensus        46 ~~FdCNICLd~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CceeeeeeccccCCCEE-eecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            36889999999999996 999999999999999984  34589999998876

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.82  E-value=1.4e-09  Score=79.35  Aligned_cols=41  Identities=41%  Similarity=0.983  Sum_probs=34.5

Q ss_pred             cccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864          108 QCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACR  149 (476)
Q Consensus       108 ~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR  149 (476)
                      .|+||++.|.  ..+..++|||.||..||..|+.. ...||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999985  45556899999999999999995 57999997

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.80  E-value=3.1e-09  Score=76.10  Aligned_cols=40  Identities=40%  Similarity=1.075  Sum_probs=36.6

Q ss_pred             ccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCc
Q 011864          109 CPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPAC  148 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~C  148 (476)
                      |+||++.+..|+.+++|||.||..||..|+. .....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999999996699999999999999998 556789988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=4.5e-09  Score=97.64  Aligned_cols=50  Identities=32%  Similarity=0.932  Sum_probs=42.4

Q ss_pred             cccccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCcccccccC
Q 011864          104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR  155 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~  155 (476)
                      ...+.|||||+-+..-  +. +.|||.||..||...++ ....||.|++.++.+
T Consensus       129 ~~~~~CPiCl~~~sek~~vs-TkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVS-TKCGHVFCSQCIKDALK-NTNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhhccccc-cccchhHHHHHHHHHHH-hCCCCCCcccccchh
Confidence            3458999999988754  44 89999999999999999 558999999988763

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.76  E-value=5e-09  Score=78.56  Aligned_cols=46  Identities=33%  Similarity=0.899  Sum_probs=40.1

Q ss_pred             cccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCcccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      +..|+||++.+.+++. ++|||. ||..|+..|+. ....||.||+++.
T Consensus         2 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVL-LPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCceEE-eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            5689999999999886 999999 99999999998 6689999999875

...

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.76  E-value=4.7e-09  Score=103.77  Aligned_cols=70  Identities=24%  Similarity=0.491  Sum_probs=56.7

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +..+...+.|-||...|..|+. ++|||+||+.||..++. ....||+||..+.. .-++.+..+..+++.+.
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~-TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~~   88 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCE-TTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESHA   88 (391)
T ss_pred             hhcchhHHHhhhhhheeeccee-cccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhhh
Confidence            3345567899999999999995 99999999999999998 55789999998776 33677777777665544

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.75  E-value=6.6e-09  Score=74.05  Aligned_cols=44  Identities=48%  Similarity=1.124  Sum_probs=38.8

Q ss_pred             cccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864          108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH  151 (476)
Q Consensus       108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~  151 (476)
                      .|+||++.+..++.+.+|||.||..|+..|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            49999999988887677999999999999998656789999875

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.6e-09  Score=103.82  Aligned_cols=85  Identities=32%  Similarity=0.677  Sum_probs=67.4

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc-------
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP-------  173 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p-------  173 (476)
                      ..+.+.+.|+||++.|..|+ +++|||+||..||..++. ....||.||. ...  .+.+|..+.+++..+..       
T Consensus         8 ~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~~~~~~~~~   82 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERLRQLRLSRPL   82 (386)
T ss_pred             hhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHHHhcCCcccc
Confidence            34567899999999999995 599999999999999998 6689999996 332  57788888888766542       


Q ss_pred             -----hhhhhHHHHHhccHHHH
Q 011864          174 -----DIDKYEEEELAFHEEER  190 (476)
Q Consensus       174 -----~c~~~ee~l~~fceeeq  190 (476)
                           .|..|.+.+.+||+.+.
T Consensus        83 ~~~~~~c~~~~~~~~~~c~~~~  104 (386)
T KOG2177|consen   83 GSKEELCEKHGEELKLFCEEDE  104 (386)
T ss_pred             cccchhhhhcCCcceEEecccc
Confidence                 35666666777877765

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.73  E-value=6.6e-09  Score=102.10  Aligned_cols=49  Identities=41%  Similarity=0.855  Sum_probs=40.6

Q ss_pred             ccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+..|+||++.+..+       ..+++|+|.||..||..|+. ...+||+||..+..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence            356899999987653       13478999999999999998 56899999998875

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.70  E-value=6.3e-09  Score=104.86  Aligned_cols=79  Identities=29%  Similarity=0.690  Sum_probs=68.6

Q ss_pred             ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccC---CCCCCCcchHHHHHhhcc
Q 011864           97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR---RSLRDDPNYDALISALYP  173 (476)
Q Consensus        97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~---~~l~~n~~L~~li~~l~p  173 (476)
                      .+.+..+...+.|.+|..+|.++.+++.|.|+||..||..++.. ...||.|...+...   ..++.+..|++++.+++|
T Consensus         6 ~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVP   84 (331)
T KOG2660|consen    6 RVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVP   84 (331)
T ss_pred             hhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcc
Confidence            34555677889999999999999999999999999999999995 78999999987664   367889999999999999


Q ss_pred             hhh
Q 011864          174 DID  176 (476)
Q Consensus       174 ~c~  176 (476)
                      ...
T Consensus        85 gl~   87 (331)
T KOG2660|consen   85 GLQ   87 (331)
T ss_pred             hHH
Confidence            764

>PHA02926 zinc finger-like protein; Provisional

Probab=98.53  E-value=4.6e-08  Score=94.10  Aligned_cols=52  Identities=31%  Similarity=0.750  Sum_probs=40.3

Q ss_pred             ccccccccccccccccc--------eeecccCCccchhHHHhhhhcC-----CCCCCCccccccc
Q 011864          103 IRKDVQCPICLGIIKKT--------RTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCAS  154 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~P--------v~i~~CgH~FC~~CI~~~~~~~-----~~~CP~CR~~~~~  154 (476)
                      ...+..|+||++....+        -.+.+|+|.||..||..|....     ...||.||..+..
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            35578999999976432        1247899999999999999742     3469999998764

>smart00184 RING Ring finger

Probab=98.49  E-value=9.1e-08  Score=65.75  Aligned_cols=39  Identities=51%  Similarity=1.201  Sum_probs=34.5

Q ss_pred             ccccccccccceeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864          109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC  148 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~C  148 (476)
                      |+||++....++. ++|||.||..|+..|+......||.|
T Consensus         1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            8999999888875 89999999999999998555789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=6.6e-08  Score=102.40  Aligned_cols=54  Identities=33%  Similarity=0.671  Sum_probs=45.1

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcC----CCCCCCcccccccCCCCCCC
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG----NNECPACRTHCASRRSLRDD  161 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~----~~~CP~CR~~~~~~~~l~~n  161 (476)
                      +..||||+....-|+. +.|||.||..||..+|...    ...||.|+..|.. +++.+.
T Consensus       186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~-kdl~pv  243 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL-KDLLPV  243 (513)
T ss_pred             CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc-cceeee
Confidence            7899999999999996 7899999999999999743    3589999998887 334433

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.44  E-value=7.1e-07  Score=90.48  Aligned_cols=49  Identities=31%  Similarity=0.716  Sum_probs=39.5

Q ss_pred             cccccccccc-cccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGI-IKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~-~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +..||||... +.+|-   .+.+|||.||..||..+|..+...||.|+..+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            4589999983 45553   3347999999999999887677899999998876

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.42  E-value=1.1e-07  Score=69.47  Aligned_cols=36  Identities=33%  Similarity=0.944  Sum_probs=22.3

Q ss_pred             cccccccccc----ceeecccCCccchhHHHhhhhcC---CCCCC
Q 011864          109 CPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG---NNECP  146 (476)
Q Consensus       109 C~ICl~~~~~----Pv~i~~CgH~FC~~CI~~~~~~~---~~~CP  146 (476)
                      ||||.+ |.+    |+. ++|||+||..||.+++..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 877    886 8899999999999999843   45676

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=9.5e-08  Score=93.88  Aligned_cols=50  Identities=26%  Similarity=0.537  Sum_probs=43.5

Q ss_pred             cccccccccccccccceeecccCCccchhHHHh-hhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDK-SMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~-~~~~~~~~CP~CR~~~~~  154 (476)
                      ..++.|+||++....|+. ++|||.||..||.. |-......||+||+.+..
T Consensus       213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            457899999999999997 99999999999999 666555569999997765

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.40  E-value=1.9e-07  Score=68.24  Aligned_cols=42  Identities=31%  Similarity=0.825  Sum_probs=34.7

Q ss_pred             ccccccccc--ccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864          108 QCPICLGII--KKTRTVMECLHRFCRECIDKSMRLGNNECPACRT  150 (476)
Q Consensus       108 ~C~ICl~~~--~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~  150 (476)
                      .|+||...+  ..+..+++|||+||..||..+. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999998  3344569999999999999988 35678999984

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.40  E-value=2.2e-07  Score=75.41  Aligned_cols=41  Identities=34%  Similarity=0.720  Sum_probs=33.1

Q ss_pred             cccccccccc------------cceeecccCCccchhHHHhhhhcCCCCCCCcc
Q 011864          108 QCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRLGNNECPACR  149 (476)
Q Consensus       108 ~C~ICl~~~~------------~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR  149 (476)
                      .|+||+..|.            -++.+.+|||.|+..||..|+. ...+||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence            4999999983            3345578999999999999998 456999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.8e-07  Score=103.24  Aligned_cols=62  Identities=24%  Similarity=0.625  Sum_probs=52.5

Q ss_pred             ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCC
Q 011864           97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD  160 (476)
Q Consensus        97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~  160 (476)
                      ...+..+...+.||+|..-+.+.| |+.|||.||..||.+.+..+...||.|.++|.. .++.+
T Consensus       634 ~EElk~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga-nDv~~  695 (698)
T KOG0978|consen  634 AEELKEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA-NDVHR  695 (698)
T ss_pred             HHHHHHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc-ccccc
Confidence            345556788899999998888888 599999999999999999888899999999987 44443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=8.4e-07  Score=91.26  Aligned_cols=48  Identities=27%  Similarity=0.674  Sum_probs=41.3

Q ss_pred             ccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          107 VQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ..|+||++.|.  +-+.++||.|.|+..||..|+......||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            48999999988  4567799999999999999999665679999986654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.1e-06  Score=87.80  Aligned_cols=49  Identities=37%  Similarity=0.752  Sum_probs=41.9

Q ss_pred             cccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...|.||+.-|.  +-+.++||.|.|+..|+.+|+..-...||+||+++..
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            478999999776  3466799999999999999998667899999998763

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=5.1e-06  Score=83.16  Aligned_cols=47  Identities=30%  Similarity=0.686  Sum_probs=42.7

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      -.|+||+....-||. ++|+|.||+-||.-........||+||.+|.+
T Consensus         8 ~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids   54 (324)
T KOG0824|consen    8 KECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS   54 (324)
T ss_pred             CcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence            469999999999985 99999999999998887677889999999986

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1.1e-05  Score=82.80  Aligned_cols=47  Identities=23%  Similarity=0.676  Sum_probs=39.2

Q ss_pred             cccccccccccc-cc------------ceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          105 KDVQCPICLGII-KK------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       105 e~l~C~ICl~~~-~~------------Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      .+..|.||++-+ ..            |.. +||||.|+..|+..|+. +..+||.||.++.
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~i  345 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPVI  345 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence            466899999974 33            355 89999999999999999 7799999999854

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.79  E-value=1.2e-05  Score=62.38  Aligned_cols=43  Identities=28%  Similarity=0.594  Sum_probs=31.4

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCC
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPA  147 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~  147 (476)
                      ..+.|||.+..|.+||....|+|+|....|..|+. .+...||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            46899999999999998789999999999999994 34568998

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.78  E-value=1.4e-05  Score=84.33  Aligned_cols=69  Identities=25%  Similarity=0.653  Sum_probs=55.1

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL  171 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l  171 (476)
                      .+.+.+.|++|..++.+|+..+.|||.||..|+..|+.. ...||.|+........+.........+..+
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            367789999999999999974599999999999999985 689999999887755555444455555444

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=8.6e-06  Score=89.42  Aligned_cols=47  Identities=30%  Similarity=0.676  Sum_probs=40.7

Q ss_pred             ccccccccccccc-----ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKK-----TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~-----Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...|+||.+.+..     |. .++|+|.||..|+..|+. ...+||.||..+..
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~-rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPK-RLPCGHIFHDSCLRSWFE-RQQTCPTCRTVLYD  342 (543)
T ss_pred             CCeeeeechhhccccccccc-eeecccchHHHHHHHHHH-HhCcCCcchhhhhc
Confidence            6689999999998     55 499999999999999999 56899999995443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.2e-05  Score=84.63  Aligned_cols=50  Identities=34%  Similarity=0.840  Sum_probs=45.0

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +..++.|.||+.++..||+ +||||+||..||.+.+. ....||.||.++..
T Consensus        81 ~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE  130 (398)
T ss_pred             ccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence            4678999999999999998 79999999999999887 56899999998875

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.75  E-value=1.3e-05  Score=75.91  Aligned_cols=59  Identities=20%  Similarity=0.470  Sum_probs=45.6

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      .+.|.||...|..||. +.|||.||..|..+-+. ....|-+|.+....  .+.+...|+.++
T Consensus       196 PF~C~iCKkdy~spvv-t~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G--~f~V~~d~~kmL  254 (259)
T COG5152         196 PFLCGICKKDYESPVV-TECGHSFCSLCAIRKYQ-KGDECGVCGKATYG--RFWVVSDLQKML  254 (259)
T ss_pred             ceeehhchhhccchhh-hhcchhHHHHHHHHHhc-cCCcceecchhhcc--ceeHHhhHHHHH
Confidence            5899999999999996 99999999999988777 44789999886543  233444444443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.7e-05  Score=78.54  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=42.2

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCcccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTHCA  153 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~~~~  153 (476)
                      ....||+|......|.++.+|+|.||+.||...+. ...++||.|...+.
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            46689999999999998888999999999988665 34579999998775

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.71  E-value=2.6e-05  Score=64.90  Aligned_cols=48  Identities=29%  Similarity=0.537  Sum_probs=36.7

Q ss_pred             cccccccccccc------------cceeecccCCccchhHHHhhhhc--CCCCCCCcccccc
Q 011864          106 DVQCPICLGIIK------------KTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCA  153 (476)
Q Consensus       106 ~l~C~ICl~~~~------------~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~  153 (476)
                      +..|.||...|.            -|+.+-.|+|.|+..||.+|+..  ....||.||.++.
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            456777766654            24445679999999999999984  3579999999765

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.57  E-value=4.5e-05  Score=76.27  Aligned_cols=44  Identities=30%  Similarity=0.861  Sum_probs=39.9

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT  150 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~  150 (476)
                      +.||+|..++.+|+.+..|+|.||..||...+-...+.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            89999999999999855899999999999988767799999965

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=5.3e-05  Score=57.66  Aligned_cols=46  Identities=24%  Similarity=0.505  Sum_probs=40.2

Q ss_pred             ccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCcccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      ..|.||++...+.|. .-||| -.|+.|-.+.++.....||.||+++.
T Consensus         8 dECTICye~pvdsVl-YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVL-YTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHH-HHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            469999999999984 88999 56999999988866789999999875

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=8.9e-05  Score=74.26  Aligned_cols=47  Identities=23%  Similarity=0.581  Sum_probs=41.3

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.|-||...|..||. +.|+|+||..|...-+. ....|++|...+..
T Consensus       241 Pf~c~icr~~f~~pVv-t~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVV-TKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG  287 (313)
T ss_pred             Cccccccccccccchh-hcCCceeehhhhccccc-cCCcceeccccccc
Confidence            4679999999999997 99999999999988887 45789999986654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.30  E-value=9.6e-05  Score=77.59  Aligned_cols=48  Identities=27%  Similarity=0.661  Sum_probs=39.4

Q ss_pred             ccccccccccccccccce---eecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          103 IRKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      +.+.-+||||++.+...+   ..+.|.|+|...|+..|+.   .+||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            455679999999887654   4478999999999999986   78999997443

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.14  E-value=0.00025  Score=74.14  Aligned_cols=34  Identities=21%  Similarity=0.821  Sum_probs=30.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhh
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM  138 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~  138 (476)
                      ++++.||||...|.+|+. ++|+|..|..|....+
T Consensus         2 eeelkc~vc~~f~~epii-l~c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPII-LPCSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehhhccCceE-eecccHHHHHHHHhhc
Confidence            568999999999999995 9999999999987665

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.06  E-value=0.00019  Score=80.83  Aligned_cols=50  Identities=22%  Similarity=0.669  Sum_probs=39.1

Q ss_pred             cccccccccccccc-----cc-eeecccCCccchhHHHhhhhc-CCCCCCCcccccc
Q 011864          104 RKDVQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA  153 (476)
Q Consensus       104 ~e~l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~  153 (476)
                      ...-.|+||..++.     -| .++..|.|.|+..|+.+|++. ++.+||+||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            44557999999876     12 334669999999999999983 5679999997665

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.0028  Score=62.22  Aligned_cols=44  Identities=25%  Similarity=0.707  Sum_probs=33.2

Q ss_pred             ccccccccc-ccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          108 QCPICLGII-KKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       108 ~C~ICl~~~-~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .|-.|.... ..|..++.|+|+||..|......   ..||.|+.++..
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceeee
Confidence            466666532 57778899999999999865432   389999998654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00038  Score=72.13  Aligned_cols=50  Identities=30%  Similarity=0.763  Sum_probs=39.3

Q ss_pred             cccccccccccccccce------ee-cccCCccchhHHHhhhhcC------CCCCCCcccccc
Q 011864          104 RKDVQCPICLGIIKKTR------TV-MECLHRFCRECIDKSMRLG------NNECPACRTHCA  153 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv------~i-~~CgH~FC~~CI~~~~~~~------~~~CP~CR~~~~  153 (476)
                      ..+..|.||++.+..++      .| .+|.|.||..||..|-...      ...||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            44789999999887665      12 5699999999999998532      468999998654

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00044  Score=73.38  Aligned_cols=50  Identities=30%  Similarity=0.624  Sum_probs=38.9

Q ss_pred             cccccccccccccc-----cc-----------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          104 RKDVQCPICLGIIK-----KT-----------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       104 ~e~l~C~ICl~~~~-----~P-----------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      +....|+||+..+.     .|           .+++||.|.|+..|+..|+....-.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            44567999998653     11           3347999999999999999854458999999775

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.86  E-value=0.00025  Score=78.63  Aligned_cols=50  Identities=28%  Similarity=0.561  Sum_probs=40.4

Q ss_pred             cccccccccccccccceee--cccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i--~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .....||+|+..+.+-...  .+|+|.||..||..|.. ...+||+||..|..
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence            3466899999877754322  56999999999999998 56899999998765

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.00074  Score=69.16  Aligned_cols=47  Identities=30%  Similarity=0.631  Sum_probs=41.9

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      ++..||||.--..+.|+ .||+|.-|+.||.+.+. +.+.|-.|++.+.
T Consensus       421 Ed~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVF-APCSHRSCYGCITQHLM-NCKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhc-cCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence            46789999999999997 99999999999999998 6689999998665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0021  Score=67.13  Aligned_cols=49  Identities=29%  Similarity=0.697  Sum_probs=39.1

Q ss_pred             cccccccccccccc----eeecccCCccchhHHHhhhhc-CCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKT----RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~P----v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~  154 (476)
                      ..+||||++-+.-|    +.++.|||.|-..||..|+.. ....||.|......
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk   57 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK   57 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence            46899999988866    234789999999999999962 23589999886554

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.00062  Score=67.52  Aligned_cols=50  Identities=28%  Similarity=0.613  Sum_probs=40.0

Q ss_pred             cccccccccccccc----------ceeecccCCccchhHHHhhhhcC-CCCCCCcccccccC
Q 011864          105 KDVQCPICLGIIKK----------TRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCASR  155 (476)
Q Consensus       105 e~l~C~ICl~~~~~----------Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~~  155 (476)
                      ++..|+||..-+..          ... +.|+|.|+..||.-|.-.+ ..+||.|+..+...
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~-LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYK-LSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhhee-eecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            46689999886653          344 8899999999999998744 56999999988763

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.46  E-value=0.0011  Score=70.93  Aligned_cols=49  Identities=29%  Similarity=0.712  Sum_probs=41.3

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhc----CCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL----GNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~----~~~~CP~CR~~~~~  154 (476)
                      ....|.+|.+.-.+++. ..|.|.||..||..++..    .+-+||.|-..++.
T Consensus       535 ~~~~C~lc~d~aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             CceeecccCChhhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            45689999999999996 999999999999888752    33589999987764

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.41  E-value=0.00099  Score=53.68  Aligned_cols=49  Identities=22%  Similarity=0.490  Sum_probs=23.9

Q ss_pred             cccccccccccc----cceee---cccCCccchhHHHhhhhc--C--------CCCCCCccccccc
Q 011864          106 DVQCPICLGIIK----KTRTV---MECLHRFCRECIDKSMRL--G--------NNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~----~Pv~i---~~CgH~FC~~CI~~~~~~--~--------~~~CP~CR~~~~~  154 (476)
                      +..|+||+..+.    .|+.+   ..|++.|+..||..||..  .        .+.||.|+.+++-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            467999998755    23322   269999999999999962  1        1369999998764

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0038  Score=64.83  Aligned_cols=48  Identities=21%  Similarity=0.528  Sum_probs=34.7

Q ss_pred             ccccccccccccc--e-eecccCCccchhHHHhhhhcCC--CCCCCccccccc
Q 011864          107 VQCPICLGIIKKT--R-TVMECLHRFCRECIDKSMRLGN--NECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~P--v-~i~~CgH~FC~~CI~~~~~~~~--~~CP~CR~~~~~  154 (476)
                      ..|.||.+.+-.-  + .+-.|||+|+..|+..||...+  ..||.|+-.+..
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            4699997665432  1 1134999999999999998543  489999954444

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.23  E-value=0.0019  Score=67.18  Aligned_cols=50  Identities=24%  Similarity=0.593  Sum_probs=39.8

Q ss_pred             cccccccccccceeecccCCccchhHHHhhhhc-CCCCCCCcccccccCCCC
Q 011864          108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRTHCASRRSL  158 (476)
Q Consensus       108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~~~~l  158 (476)
                      .|-||-+--++-. |-||||..|..|+..|-.. ....||.||..+..+..+
T Consensus       371 LCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  371 LCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            5889988766644 5899999999999999853 357999999988764433

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.0025  Score=65.66  Aligned_cols=47  Identities=30%  Similarity=0.704  Sum_probs=38.9

Q ss_pred             cccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...|-||+.-.++.+. +||-| -.|..|.....- ..+.||.||.++..
T Consensus       290 gkeCVIClse~rdt~v-LPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVV-LPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEE-ecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            4579999999999985 99999 569999877553 45789999998865

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=96.01  E-value=0.0051  Score=50.53  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          120 RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       120 v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +..--|.|.|+..||.+|+. ..+.||+|++.+..
T Consensus        49 v~wG~CnHaFH~HCI~rWL~-Tk~~CPld~q~w~~   82 (88)
T COG5194          49 VVWGVCNHAFHDHCIYRWLD-TKGVCPLDRQTWVL   82 (88)
T ss_pred             EEEEecchHHHHHHHHHHHh-hCCCCCCCCceeEE
Confidence            43345999999999999999 46899999997654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.90  E-value=0.0058  Score=61.18  Aligned_cols=56  Identities=14%  Similarity=0.312  Sum_probs=43.5

Q ss_pred             cccccccccccccc---cceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864          104 RKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD  161 (476)
Q Consensus       104 ~e~l~C~ICl~~~~---~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n  161 (476)
                      ...+.|||+...|.   .-|.+.+|||.|+..+|...-  ....||+|..+|.....+..|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln  169 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN  169 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence            55789999999885   346667999999999999873  346799999999874444333

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.0067  Score=60.97  Aligned_cols=47  Identities=32%  Similarity=0.806  Sum_probs=38.7

Q ss_pred             ccccccc-ccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          108 QCPICLG-IIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       108 ~C~ICl~-~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .||+|.. .+.+|-   .+-+|+|..|.+|+...+..+...||.|...+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            5999985 666772   3358999999999999999888999999886654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.70  E-value=0.009  Score=44.83  Aligned_cols=41  Identities=24%  Similarity=0.589  Sum_probs=31.4

Q ss_pred             ccccccc--ccccceeecccC-----CccchhHHHhhhhcC-CCCCCCcc
Q 011864          108 QCPICLG--IIKKTRTVMECL-----HRFCRECIDKSMRLG-NNECPACR  149 (476)
Q Consensus       108 ~C~ICl~--~~~~Pv~i~~Cg-----H~FC~~CI~~~~~~~-~~~CP~CR  149 (476)
                      .|.||++  .-.+|. +.||.     |.|+..|+.+|+... ...||+|.
T Consensus         1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  334555 48885     789999999999743 46899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.011  Score=58.23  Aligned_cols=50  Identities=20%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             cccccccccccccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...+.||||.+.+.+.+   .+-+|||.||..|+.+++. ....||+|-.++..
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD  271 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence            35789999999999764   3478999999999999988 56899999998876

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.0039  Score=62.62  Aligned_cols=42  Identities=33%  Similarity=0.761  Sum_probs=35.1

Q ss_pred             cccccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCcccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      ...|.||++...+-++ ++||| .-|..|-.+     .+.||+||+.+.
T Consensus       300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence            6789999999999997 99999 459999643     358999998654

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=95.10  E-value=0.022  Score=55.93  Aligned_cols=49  Identities=29%  Similarity=0.810  Sum_probs=37.7

Q ss_pred             ccccccccc-ccccce---eecc-cCCccchhHHHhhhhcCCCCCC--Cccccccc
Q 011864          106 DVQCPICLG-IIKKTR---TVME-CLHRFCRECIDKSMRLGNNECP--ACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~-~~~~Pv---~i~~-CgH~FC~~CI~~~~~~~~~~CP--~CR~~~~~  154 (476)
                      +-.||||.. .+-+|-   .+-| |-|..|.+|+.+.|..+...||  -|.+.+..
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            447999985 555662   1233 9999999999999998889999  78775543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=0.011  Score=61.07  Aligned_cols=45  Identities=29%  Similarity=0.560  Sum_probs=35.2

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ....|.||++-.++.+. +||||..|  |..-..  ....||+||..+..
T Consensus       304 ~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~--~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSK--HLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCceEEecCCccceee-ecCCcEEE--chHHHh--hCCCCchhHHHHHH
Confidence            35679999999999887 99999877  665433  34569999987754

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.00  E-value=0.019  Score=42.97  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=22.3

Q ss_pred             ccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864          109 CPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHC  152 (476)
Q Consensus       109 C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~  152 (476)
                      ||+|.+.+...   +.--+||+.+|..|....+....+.||.||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888877321   111358999999999998875678999999864

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.0063  Score=49.62  Aligned_cols=31  Identities=35%  Similarity=0.749  Sum_probs=25.9

Q ss_pred             cccCCccchhHHHhhhhc--CCCCCCCcccccc
Q 011864          123 MECLHRFCRECIDKSMRL--GNNECPACRTHCA  153 (476)
Q Consensus       123 ~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~  153 (476)
                      --|.|.|...||.+|+..  +...||.||..+.
T Consensus        49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            459999999999999973  3458999998764

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.014  Score=59.62  Aligned_cols=48  Identities=21%  Similarity=0.415  Sum_probs=40.1

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC  152 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~  152 (476)
                      .+...||||+....+|..+.--|-.||+.||..++. ..+.||+-..+.
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence            456789999999999987666799999999999998 668999765443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.87  E-value=0.021  Score=51.35  Aligned_cols=58  Identities=26%  Similarity=0.478  Sum_probs=46.1

Q ss_pred             ceecccccccccccccccccccccceeecc---cCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864           95 FVFVELPEIRKDVQCPICLGIIKKTRTVME---CLHRFCRECIDKSMRL--GNNECPACRTHCAS  154 (476)
Q Consensus        95 ~~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~---CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~  154 (476)
                      ++.++.+.  ..+.|-||.+...+..++-|   ||-..|..|....|+.  -...||+|++.|.+
T Consensus        71 vmnvF~d~--~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   71 VMNVFLDP--KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             HheeecCC--CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            34555555  57899999999887776443   9999999999999983  24689999998876

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=0.021  Score=57.85  Aligned_cols=63  Identities=25%  Similarity=0.513  Sum_probs=47.1

Q ss_pred             ccccccccccc------cceeecccCCccchhHHHhhhhcCCCCCCCccccc--cc--CCCCCCCcchHHHHHh
Q 011864          107 VQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC--AS--RRSLRDDPNYDALISA  170 (476)
Q Consensus       107 l~C~ICl~~~~------~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~--~~--~~~l~~n~~L~~li~~  170 (476)
                      +.|-||-..|.      .|.. +.|||+||..|+...+......||.||.+.  ..  ...+..|+.+..++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~-l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~   76 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRV-LKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH   76 (296)
T ss_pred             CceeecCccccccCcccCCcc-cccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence            57999988775      4553 789999999999998886677899999973  22  1255667777666644

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.53  E-value=0.015  Score=65.64  Aligned_cols=46  Identities=35%  Similarity=0.800  Sum_probs=38.0

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~  154 (476)
                      +.|+||++ ...++ ++.|+|.||..|+...+... ...||.||..+..
T Consensus       455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            89999999 55666 59999999999999988743 3469999987655

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.02  Score=49.23  Aligned_cols=45  Identities=27%  Similarity=0.482  Sum_probs=33.7

Q ss_pred             cccccccccccccc----------------eeecccCCccchhHHHhhhhcCCCCCCCcccc
Q 011864          106 DVQCPICLGIIKKT----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTH  151 (476)
Q Consensus       106 ~l~C~ICl~~~~~P----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~  151 (476)
                      --.|+||..-+-++                |.--.|.|.|+..||.+|++ ..+.||+|.+.
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlk-tr~vCPLdn~e  106 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLK-TRNVCPLDNKE  106 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHh-hcCcCCCcCcc
Confidence            45799987654321                22235999999999999999 55899999874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.33  E-value=0.018  Score=60.02  Aligned_cols=49  Identities=27%  Similarity=0.669  Sum_probs=38.3

Q ss_pred             ccccccccccccc-cc--eeecccCCccchhHHHhhhhc-CCCCCCCcccccc
Q 011864          105 KDVQCPICLGIIK-KT--RTVMECLHRFCRECIDKSMRL-GNNECPACRTHCA  153 (476)
Q Consensus       105 e~l~C~ICl~~~~-~P--v~i~~CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~  153 (476)
                      -.+.|-.|.+.+- .|  ...+||.|+|+..|+..++.. +..+||.||+-.+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            4688999998764 22  344899999999999999863 4569999996444

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=94.15  E-value=0.029  Score=57.38  Aligned_cols=65  Identities=20%  Similarity=0.397  Sum_probs=47.4

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      .-+-+.||||...+..|++--+=||..|..|-.+    ..+.||.||.++..    .....+..+++.....|
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~----~R~~amEkV~e~~~vpC  109 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN----IRCRAMEKVAEAVLVPC  109 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc----HHHHHHHHHHHhceecc
Confidence            3456889999999999985334479999999754    34789999998875    24556666666655433

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.82  E-value=0.038  Score=42.44  Aligned_cols=46  Identities=26%  Similarity=0.555  Sum_probs=35.5

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ....|-.|...-...+. ++|||..|..|..-+   +.+-||.|.++|..
T Consensus         6 ~~~~~~~~~~~~~~~~~-~pCgH~I~~~~f~~~---rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTV-LPCGHLICDNCFPGE---RYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEcccccccccc-ccccceeeccccChh---hccCCCCCCCcccC
Confidence            34567788877666665 999999999997543   44779999998864

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=93.44  E-value=0.02  Score=57.79  Aligned_cols=50  Identities=28%  Similarity=0.507  Sum_probs=38.5

Q ss_pred             ccccccccccccc-cc-eeecccCCccchhHHHhhhhc----------------------CCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIK-KT-RTVMECLHRFCRECIDKSMRL----------------------GNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~-~P-v~i~~CgH~FC~~CI~~~~~~----------------------~~~~CP~CR~~~~~  154 (476)
                      ....|.||+.-|. .| .+.++|.|.|+..|+.+++..                      ....||+||..+..
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            3568999998776 34 566899999999999988731                      11369999987754

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.89  E-value=0.054  Score=55.62  Aligned_cols=47  Identities=28%  Similarity=0.633  Sum_probs=34.3

Q ss_pred             cccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          108 QCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       108 ~C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .||+|++.+...   .+--+||-..|..|....-..-++.||.||..+..
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            499999876522   22246898889999876655445799999987765

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.55  E-value=0.088  Score=39.66  Aligned_cols=45  Identities=20%  Similarity=0.558  Sum_probs=25.4

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTH  151 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~  151 (476)
                      .+.|||....+..|+....|.|.-|.+ +..|+.    .+...||.|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence            468999999999999989999998876 344543    244689999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.00  E-value=0.25  Score=56.20  Aligned_cols=41  Identities=22%  Similarity=0.660  Sum_probs=35.8

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT  150 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~  150 (476)
                      .-.|.+|...+.-|+.-..|||.|+..|+.    .+...||.|+.
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            358999999999997669999999999997    35678999986

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.00  E-value=0.1  Score=53.82  Aligned_cols=47  Identities=28%  Similarity=0.723  Sum_probs=36.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhh-cCCCCCCCcccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR-LGNNECPACRTH  151 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~-~~~~~CP~CR~~  151 (476)
                      ++...|.||-.-+.-... +||+|..|-.|..+.-. .....||.||+.
T Consensus        59 Een~~C~ICA~~~TYs~~-~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          59 EENMNCQICAGSTTYSAR-YPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             cccceeEEecCCceEEEe-ccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            446789999998776554 99999999999876433 245789999974

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.83  E-value=0.051  Score=60.77  Aligned_cols=67  Identities=31%  Similarity=0.761  Sum_probs=50.0

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCcccccccCCCCCCCcchHHHHH
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCASRRSLRDDPNYDALIS  169 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~~~~l~~n~~L~~li~  169 (476)
                      ..+...+.|+||...+..|+. +.|.|.||..|+...|..  +...||+|+..+.. +..+..+....++.
T Consensus        16 ~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK-~s~~Es~r~sq~vq   84 (684)
T KOG4362|consen   16 NAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK-RSLRESPRFSQLSK   84 (684)
T ss_pred             HHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhhh-hhccccchHHHHHH
Confidence            345668899999999999975 999999999999876652  34689999977665 44444444444443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.41  E-value=0.084  Score=53.70  Aligned_cols=46  Identities=26%  Similarity=0.558  Sum_probs=32.0

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .-+|.-|--.+..--.+++|.|.||..|...-   ..+.||.|-..+..
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQR  135 (389)
T ss_pred             eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHHH
Confidence            34677786654433334899999999997542   34789999876543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.39  E-value=0.087  Score=58.08  Aligned_cols=40  Identities=25%  Similarity=0.697  Sum_probs=33.3

Q ss_pred             ccccccccccccccc----cceeecccCCccchhHHHhhhhcCCCCCC
Q 011864          103 IRKDVQCPICLGIIK----KTRTVMECLHRFCRECIDKSMRLGNNECP  146 (476)
Q Consensus       103 l~e~l~C~ICl~~~~----~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP  146 (476)
                      +..-+.|+||+..|.    .||. +-|||+.|..|+.....   .+||
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp   51 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP   51 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC
Confidence            455688999998876    6887 88999999999988765   5677

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.33  E-value=0.15  Score=53.76  Aligned_cols=47  Identities=23%  Similarity=0.624  Sum_probs=34.8

Q ss_pred             cccccccccccccccc--eeecccCCccchhHHHhhhhc----C---CCCCCCccc
Q 011864          104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRL----G---NNECPACRT  150 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~----~---~~~CP~CR~  150 (476)
                      ...+.|.||++...-.  +..+||+|.||..|+..++..    +   .-.||.|.-
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            3467899999977643  334899999999999999862    2   236887654

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=90.89  E-value=0.098  Score=44.37  Aligned_cols=32  Identities=22%  Similarity=0.532  Sum_probs=25.6

Q ss_pred             cccccccccccccccc-eeecccCCccchhHHH
Q 011864          104 RKDVQCPICLGIIKKT-RTVMECLHRFCRECID  135 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P-v~i~~CgH~FC~~CI~  135 (476)
                      ...-.|++|...+.++ ..+.||||.|+..|+.
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3456799999987754 4558999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=90.22  E-value=0.069  Score=62.98  Aligned_cols=51  Identities=24%  Similarity=0.650  Sum_probs=42.1

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      .+.....|+||++++.+--.++.|||.||..|+..|+. ....||.|...+-
T Consensus      1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIKG 1199 (1394)
T ss_pred             HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhhh
Confidence            34556799999999996665689999999999999998 4578999985443

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=89.94  E-value=0.28  Score=35.77  Aligned_cols=40  Identities=30%  Similarity=0.810  Sum_probs=24.9

Q ss_pred             ccccccccccceeec--ccCCccchhHHHhhhhcCCC-CCCCc
Q 011864          109 CPICLGIIKKTRTVM--ECLHRFCRECIDKSMRLGNN-ECPAC  148 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~--~CgH~FC~~CI~~~~~~~~~-~CP~C  148 (476)
                      |.+|.++...-+...  .|+-.++..|+..+|..... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            778999988887654  59989999999999985433 69988

; PDB: 3NW0_A 2CT0_A.

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.91  E-value=0.33  Score=47.49  Aligned_cols=48  Identities=21%  Similarity=0.581  Sum_probs=36.8

Q ss_pred             cccccccccccc--cceeecccCCccchhHHHhhhhcC-------CCCCCCccccccc
Q 011864          106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLG-------NNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~-------~~~CP~CR~~~~~  154 (476)
                      .-.|.+|...+.  +.+. +-|.|.|+..|+..|...-       ...||.|...|..
T Consensus        50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            346999998876  4455 8899999999999997631       1379999886643

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.98  E-value=0.26  Score=51.76  Aligned_cols=49  Identities=16%  Similarity=0.470  Sum_probs=38.3

Q ss_pred             ccccccccccccccc--cceeecccCCccchhHHHhhhhcCC--CCCCCcccc
Q 011864          103 IRKDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGN--NECPACRTH  151 (476)
Q Consensus       103 l~e~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~--~~CP~CR~~  151 (476)
                      +...+.|||=.+.-.  +|-+.+.|||..|..-|.+..+.+.  +.||.|-..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            566789998766443  4433499999999999999998776  789999653

>PHA03096 p28-like protein; Provisional

Probab=88.68  E-value=0.23  Score=50.57  Aligned_cols=44  Identities=34%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             ccccccccccc-cce------eecccCCccchhHHHhhhhcC--CCCCCCccc
Q 011864          107 VQCPICLGIIK-KTR------TVMECLHRFCRECIDKSMRLG--NNECPACRT  150 (476)
Q Consensus       107 l~C~ICl~~~~-~Pv------~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~  150 (476)
                      -.|.||++... .++      .+..|.|.||..||..|....  ...||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            36999998654 221      135799999999999998742  235555554

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.46  E-value=0.53  Score=46.71  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhh
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR  139 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~  139 (476)
                      +..--.|++|+..+.+||. ++=||.||+.||..++-
T Consensus        40 iK~FdcCsLtLqPc~dPvi-t~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVI-TPDGYLFDREAILEYIL   75 (303)
T ss_pred             cCCcceeeeecccccCCcc-CCCCeeeeHHHHHHHHH
Confidence            4444579999999999995 99999999999998765

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.09  E-value=2.1  Score=41.64  Aligned_cols=40  Identities=28%  Similarity=0.610  Sum_probs=31.0

Q ss_pred             ccccccccccceeecccCC-ccchhHHHhhhhcCCCCCCCccccccc
Q 011864          109 CPICLGIIKKTRTVMECLH-RFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       109 C~ICl~~~~~Pv~i~~CgH-~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      |-+|...-.. |.++||.| .+|..|-..     ...||.|+.+...
T Consensus       161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhhc
Confidence            9999887666 55699998 789999543     4579999986654

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.90  E-value=0.38  Score=48.56  Aligned_cols=35  Identities=26%  Similarity=0.734  Sum_probs=30.1

Q ss_pred             ccccccccccccccceeeccc----CCccchhHHHhhhhc
Q 011864          105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL  140 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~C----gH~FC~~CI~~~~~~  140 (476)
                      ..+.|.+|.+.|.+..+ ..|    .|.||+.|-...++.
T Consensus       267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~  305 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQ  305 (352)
T ss_pred             CceeehhhhhhhccCce-eecCCCcccceecccCHHHHHh
Confidence            45899999999999986 566    599999999998873

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=84.30  E-value=0.88  Score=42.37  Aligned_cols=33  Identities=27%  Similarity=0.698  Sum_probs=23.0

Q ss_pred             cccccccccccccceeeccc------------CCcc-chhHHHhhhh
Q 011864          106 DVQCPICLGIIKKTRTVMEC------------LHRF-CRECIDKSMR  139 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~C------------gH~F-C~~CI~~~~~  139 (476)
                      +..||||++...+.|. +-|            +-.| ...|+.++-+
T Consensus         2 d~~CpICme~PHNAVL-LlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVL-LLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEE-EEeccccCCccccccCCccchhHHHHHHHH
Confidence            5689999999999986 433            3222 4678877653

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.55  E-value=0.7  Score=34.56  Aligned_cols=43  Identities=23%  Similarity=0.692  Sum_probs=24.3

Q ss_pred             cccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCccccccc
Q 011864          108 QCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       108 ~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .|--|.-....   ++.|. |..|..|+..++. .+..||.|..+++.
T Consensus         4 nCKsCWf~~k~---Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCWFANKG---LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS-S--SS---EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE---
T ss_pred             cChhhhhcCCC---eeeecchhHHHHHHHHHhc-cccCCCcccCcCcc
Confidence            45555443333   35577 8889999999988 66899999987764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=82.61  E-value=0.5  Score=42.83  Aligned_cols=34  Identities=26%  Similarity=0.556  Sum_probs=27.5

Q ss_pred             ccccccccccccc--ceeecccC------CccchhHHHhhhh
Q 011864          106 DVQCPICLGIIKK--TRTVMECL------HRFCRECIDKSMR  139 (476)
Q Consensus       106 ~l~C~ICl~~~~~--Pv~i~~Cg------H~FC~~CI~~~~~  139 (476)
                      ...|.||++.+.+  -|..+.||      |.||..|+.+|-.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            6789999998877  56556676      6799999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=81.40  E-value=0.87  Score=52.04  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=37.8

Q ss_pred             cccccccccccccc--cce-eecccCCccchhHHHhhhhc------CCCCCCCcccccc
Q 011864          104 RKDVQCPICLGIIK--KTR-TVMECLHRFCRECIDKSMRL------GNNECPACRTHCA  153 (476)
Q Consensus       104 ~e~l~C~ICl~~~~--~Pv-~i~~CgH~FC~~CI~~~~~~------~~~~CP~CR~~~~  153 (476)
                      ...+.|.||.+.+.  .|+ ....|.|+|...||..|...      ....||.|..+..
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~  247 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK  247 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence            34688999999876  343 33568999999999999863      2358999995443

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=81.22  E-value=1.2  Score=36.60  Aligned_cols=49  Identities=29%  Similarity=0.672  Sum_probs=22.6

Q ss_pred             cccccccccccc-----cc-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIK-----KT-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~-----~P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .-.|.||.+.+-     ++ |.+..|+-..|+.|..--.+.++..||.|++.+..
T Consensus         9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr   63 (80)
T PF14569_consen    9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR   63 (80)
T ss_dssp             S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred             CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence            457999998653     22 33456888899999987777788999999987764

>PHA02862 5L protein; Provisional

Probab=80.61  E-value=1.2  Score=40.89  Aligned_cols=46  Identities=20%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             ccccccccccccceeecccCC-----ccchhHHHhhhhc-CCCCCCCccccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLH-----RFCRECIDKSMRL-GNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH-----~FC~~CI~~~~~~-~~~~CP~CR~~~~~  154 (476)
                      -.|-||.+.-...+  .||..     ..+..|+.+|+.. +...||.|+.++..
T Consensus         3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            36999998765443  46553     4589999999983 44689999998765

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=80.56  E-value=1.3  Score=53.16  Aligned_cols=50  Identities=22%  Similarity=0.542  Sum_probs=34.8

Q ss_pred             ccccccccccc--cccceeecccCCccchhHHHhhhhcC---C------CCCCCccccccc
Q 011864          105 KDVQCPICLGI--IKKTRTVMECLHRFCRECIDKSMRLG---N------NECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~--~~~Pv~i~~CgH~FC~~CI~~~~~~~---~------~~CP~CR~~~~~  154 (476)
                      .+..|-||..-  -..|..-+.|+|.|+..|....+..+   .      -.||.|..++..
T Consensus      3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            45678888752  23454348999999999998776521   1      279999886653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	476
2ckl_B	165	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		9e-22
3rpg_C	121	Bmi1RING1B-Ubch5c Complex Structure Length = 121		4e-20
2h0d_B	100	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		7e-19
2h0d_A	97	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		1e-04
3rpg_B	117	Bmi1RING1B-Ubch5c Complex Structure Length = 117		2e-04
2ckl_A	108	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		2e-04
1jm7_A	112	Solution Structure Of The Brca1/bard1 Ring-domain H		2e-04
2djb_A	72	Solution Structure Of The Ring Domain Of The Human		4e-04
3hct_A	118	Crystal Structure Of Traf6 In Complex With Ubc13 In		8e-04
2ysl_A	73	Solution Structure Of The Ring Domain (1-66) From T		9e-04

>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 165

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%)
Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 44  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
Query: 156 RSLRDDPNYDALISALYPDIDKY 178
           RSLR DPN+DALIS +YP  D+Y
Sbjct: 104 RSLRPDPNFDALISKIYPSRDEY 126

>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure Length = 121

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 96  VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
           + V    +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+
Sbjct: 43  IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 102
Query: 156 RSLRDDPNYDALISALYP 173
           RSLR DPN+DALIS +YP
Sbjct: 103 RSLRPDPNFDALISKIYP 120

>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 100

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 50/70 (71%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           +  ++ CPICL ++K T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DP
Sbjct: 31  LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 90
Query: 163 NYDALISALY 172
           N+DALIS +Y
Sbjct: 91  NFDALISKIY 100

>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 97

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 98  VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
           +++ E+   + C +C G      T++ECLH FC+ CI + +   +  CP C       R 
Sbjct: 3   IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 61
Query: 158 L---RDDPNYDALISALYPDIDK 177
           L   R D     ++  L P + K
Sbjct: 62  LLNIRSDKTLQDIVYKLVPGLFK 84

>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure Length = 117

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 98  VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
           +++ E+   + C +C G      T++ECLH FC+ CI + +   +  CP C       R 
Sbjct: 7   IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDK 177
           L   R D     ++  L P + K
Sbjct: 66  LLNIRSDKTLQDIVYKLVPGLFK 88

>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 98  VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
           +++ E+   + C +C G      T++ECLH FC+ CI + +   +  CP C       R 
Sbjct: 7   IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 158 L---RDDPNYDALISALYPDIDK 177
           L   R D     ++  L P + K
Sbjct: 66  LLNIRSDKTLQDIVYKLVPGLFK 88

>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRSLRD 160
           ++K ++CPICL +IK+  +  +C H FC+ C+ K +  + G ++CP C+    ++RSL++
Sbjct: 18  MQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRSLQE 75
Query: 161 DPNYDALISALYPDIDKY 178
              +  L+  L   I  +
Sbjct: 76  STRFSQLVEELLKIICAF 93

>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human Polycomb Group Ring Finger Protein 6 Length = 72

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
           L E+   + C IC G +    T+ ECLH FC+ CI +     +N CP C
Sbjct: 9   LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKC 56

>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 118

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECP 146
           P +    +CPICL  +++      C HRFC+ CI KS+R   ++CP
Sbjct: 13  PPLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCP 57

>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From Tripartite Motif-containing Protein 31 Length = 73

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDK--SMRLGNNECPACRT 150
           +++++V CPICL I++K  T+ +C H FC +CI +      G  +CP C+T
Sbjct: 16  KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKT 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	8e-31
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-21
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	5e-17
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-17
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-17
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-14
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-14
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	8e-13
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	4e-12
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	4e-12
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-12
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	8e-11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	9e-11
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-10
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	6e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	7e-10
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-09
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-09
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-09
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	6e-09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	9e-09
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	8e-08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	1e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	3e-07
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-07
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	7e-07
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-06
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-06
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	3e-06
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	4e-06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	7e-06
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-05
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	5e-04

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score =  116 bits (291), Expect = 8e-31
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 58  EDQKDDEEVEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIK 117
                 + +    +    E +   +   +D          V    +  ++ CPICL ++K
Sbjct: 11  VQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIV-----VSPRSLHSELMCPICLDMLK 65

Query: 118 KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDK 177
            T T  ECLHRFC +CI  ++R GN ECP CR    S+RSLR DPN+DALIS +YP  D+
Sbjct: 66  NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDE 125

Query: 178 YEEEELAFHEEERTRNKQ--IQASIAKIFQRQSEALVKR 214
           YE  +          N Q  +  SI +  + Q+   ++R
Sbjct: 126 YEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQR 164

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 87.6 bits (217), Expect = 3e-21
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 94  EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA 153
               +++ E+   + C +C G      T++ECLH FC+ CI + +   +  CP C     
Sbjct: 3   RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVH 61

Query: 154 SRR---SLRDDPNYDALISALYPDIDKYEEEELAFHEEER 190
             R   ++R D     ++  L P + K E +         
Sbjct: 62  KTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAH 101

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 74.4 bits (183), Expect = 5e-17
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 98  VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRS 157
             L E+   + C IC G +    T+ ECLH FC+ CI +     +N CP C       + 
Sbjct: 7   GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65

Query: 158 L 158
           L
Sbjct: 66  L 66

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 77.0 bits (189), Expect = 5e-17
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 9/156 (5%)

Query: 22  GEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQKDDEEVEGEGDEEDEENEDDS 81
           G              + S    +  +   + +    E  +   + +    E+ +  +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSPSASKVYKASDSAEAI--EAFQLTPQQQHLIREDCQNQKLWD 59

Query: 82  EGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG 141
           E  S    G         L ++ +   C  C  ++ +  T  EC H  C++C+ +S +  
Sbjct: 60  EVLSHLVEGPNF------LKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQ 112

Query: 142 NNECPACRTHCASRRSLRDDPNYDALISALYPDIDK 177
              CPACR        +  +     L+   +P   K
Sbjct: 113 VFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYSK 148

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 75.8 bits (186), Expect = 7e-17
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 10/125 (8%)

Query: 52  EQQQLEEDQKDDEEVEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVE--LPEIRKDVQC 109
           E   L   Q            ED+ N        +            +  L ++ +  QC
Sbjct: 3   EPYSLTAQQSSLIR-------EDKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQC 55

Query: 110 PICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 169
             C  ++ +  T   C H  C++C+D+S R     CPACR       +++ +     +++
Sbjct: 56  ICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLN 114

Query: 170 ALYPD 174
            L+P 
Sbjct: 115 QLFPG 119

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 98  VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKS-MRLGNNECPACRTHCASRR 156
            E   I  ++ C IC  I+     +  C + +C ECI  + +    + CP C  +  S  
Sbjct: 7   GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

Query: 157 SLRDDPN 163
           +L    +
Sbjct: 67  ALSGPSS 73

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 99  ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 158
            +  I +  +C IC+  ++  R    C    C  CI + +     +CP CR      R L
Sbjct: 15  SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL-QLREL 73

Query: 159 RDDPNYDALISAL 171
            +    + +   L
Sbjct: 74  VNCRWAEEVTQQL 86

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 64.8 bits (158), Expect = 3e-13
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 99  ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 158
            +  I   ++C IC         + +C H +C  CI K +     +CP C     +   L
Sbjct: 15  VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTV-TEPDL 72

Query: 159 RDDPNYDALISAL 171
           +++   D L+ +L
Sbjct: 73  KNNRILDELVKSL 85

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 62.5 bits (152), Expect = 8e-13
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 89  SGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPAC 148
           S     FV      +    +C  C  ++   +   EC HRFC  C+   +   + +C AC
Sbjct: 2   SSGSSGFV----KTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTAC 56

Query: 149 RTHCASR 155
           +      
Sbjct: 57  QESIVKD 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS-RRSLRDDPNYD 165
           +CPICL         + CLH FC  CI + +R  N  CP C+    S   ++  D  + 
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESVVHTIESDSEFG 64

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD 160
           P +    +CPICL  +++      C HRFC+ CI KS+R   ++CP         +   D
Sbjct: 13  PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 62.4 bits (151), Expect = 6e-12
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 3/140 (2%)

Query: 50  QNEQQQLEEDQKDDEEVEGEGDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQC 109
           Q     +EE  +  ++ E     +++E E   E        +K E +      +  ++QC
Sbjct: 9   QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEK-MQAQKEEVLSHMNDVLENELQC 67

Query: 110 PICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIS 169
            IC     +  T + C H FC  CI++ M+    ECP CR    S+       N    + 
Sbjct: 68  IICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKSKTYSLVLDNCINKMV 125

Query: 170 ALYPDIDKYEEEELAFHEEE 189
                  K     L    + 
Sbjct: 126 NNLSSEVKERRIVLIRERKA 145

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 58.4 bits (141), Expect = 8e-11
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 99  ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS--RR 156
           +      + QC IC+ I+ +  T + C H  C+ C   ++   +  CP CR   +S  R 
Sbjct: 8   DAIPSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRY 66

Query: 157 SLRDDPNYD----ALISALYPD-----IDKYEEEELAFHEEE 189
             R +   +     +I   YP          E EE+A   + 
Sbjct: 67  HTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQP 108

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 58.0 bits (140), Expect = 9e-11
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
           L  + K ++C  C  I+++   +  C H FC  C+   +      CP C T     + L+
Sbjct: 16  LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPA-WIQDLK 71

Query: 160 DDPNYDALISAL 171
            +   D++I   
Sbjct: 72  INRQLDSMIQLC 83

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 60.9 bits (147), Expect = 2e-10
 Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 2/156 (1%)

Query: 10  ESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQKDDEEVEGE 69
           +      G  +      R   +   +     +  Q +   +   Q L +  ++   +  +
Sbjct: 236 QKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPD 295

Query: 70  GDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRF 129
           G  ++ +     E    D      E   +          C IC    K  + +  C H  
Sbjct: 296 GRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK-IEPCGHLM 354

Query: 130 CRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYD 165
           C  C+          CP CR        +  D  +D
Sbjct: 355 CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD-PFD 389

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 106 DVQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
            V CPIC+          +     EC H FC +C+  S++   N CP CR    + +   
Sbjct: 3   MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKI-NHKRYH 60

Query: 160 DDPNY 164
             P Y
Sbjct: 61  --PIY 63

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 55.2 bits (133), Expect = 6e-10
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 99  ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKS-MRLGNNECPACRTHCASRRS 157
           E   I  ++ C IC  I+     +  C + +C ECI  + +    + CP C  +  S  +
Sbjct: 6   EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 65

Query: 158 LRDDPNYDALISAL 171
           L  +      ++  
Sbjct: 66  LIANKFLRQAVNNF 79

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 54.1 bits (130), Expect = 7e-10
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 102 EIRKDVQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
                V CPIC+          +     EC H FC +C+  S++   N CP CR     +
Sbjct: 6   RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 64

Query: 156 RSLR 159
           R   
Sbjct: 65  RYHP 68

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
               K + C IC  I+        C H FCR CI + +++  + CP+CR  C   
Sbjct: 18  AHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 87  DTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNE 144
           D S  + E V   +  ++K ++CPICL +IK+  +  +C H FC+ C+ K +  + G ++
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQ 60

Query: 145 CPACRTHCASRRSLRDDPNY 164
           CP C+    ++RSL+   + 
Sbjct: 61  CPLCKNDI-TKRSLQ--EST 77

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 105 KDVQCPICLGIIK------KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR 155
             V CPIC+          +     EC H FC +C+  S++   N CP CR     +
Sbjct: 14  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 69

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 55.1 bits (132), Expect = 3e-09
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 97  FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR 156
           F     +    +CPICL  +++      C HRFC+ CI KS+R   ++CP         +
Sbjct: 11  FDP--PLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

Query: 157 SLRD 160
              D
Sbjct: 68  LFPD 71

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNECPACRTHCASRRS 157
           + +++++V CPICL I++K  T+ +C H FC +CI +      G  +CP C+T    + +
Sbjct: 14  VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV-RKNA 71

Query: 158 LR 159
           +R
Sbjct: 72  IR 73

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 53.2 bits (127), Expect = 9e-09
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 84  PSSDTSGEKPEF---VFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL 140
           P       +P F   +     ++     C  C  ++++     +C HR+C  C+   +  
Sbjct: 8   PPGSLELLQPGFSKTLLGT--KLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSS 64

Query: 141 GNNECPACRTHCASR 155
           G   C AC       
Sbjct: 65  GPQNCAACVHEGIYE 79

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE-----CPACRTHCAS 154
           L  I+++V CPICL ++K+  +  +C H FCR CI  +     N      CP CR     
Sbjct: 13  LEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY-P 70

Query: 155 RRSLRDDPN 163
             +L+  PN
Sbjct: 71  FGNLK--PN 77

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152
             +C ICL         + C H FC  C+  +  LG   C  CR   
Sbjct: 15  VPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLG-KRCALCRQEI 59

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152
           E  + ++C  C    K  + ++ CLH  C  C++        +CP C+   
Sbjct: 2   EEFQFLRCQQCQAEAKCPK-LLPCLHTLCSGCLEA----SGMQCPICQAPW 47

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 102 EIRKDVQCPICL---GIIKKTRTVMECLHRFCRECIDKSMRLGNN--ECPACR--THCAS 154
            +R+ ++CPIC+      +    ++ C H  CR+C++K +    N   CP C   T   S
Sbjct: 11  ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70

Query: 155 RRSLRDDPNYDAL 167
              L D  N   L
Sbjct: 71  LTQLTD--NLTVL 81

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR------LGNNECPACRTHCA 153
              ++++V CPICL ++ +  ++ +C H  CR CI  S +       G + CP C     
Sbjct: 6   SGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY- 63

Query: 154 SRRSLR 159
           S   L+
Sbjct: 64  SFEHLQ 69

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECI-----DKSMRLGNNECPACRTHCAS 154
           L  ++++V CPICL ++ +  ++ +C H FC+ C+        +  G + CP CR     
Sbjct: 13  LVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY-Q 70

Query: 155 RRSLRDDPN 163
             ++R  PN
Sbjct: 71  PENIR--PN 77

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
              CPICL  I        V+ C H   R C ++ M      CP C 
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE-MLKEGYRCPLCS 50

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 106 DVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 159
            V CPIC+    +           EC H FC +C+  S++   N CP CR     +R   
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP 65

Query: 160 DDPNYDALISAL 171
                  +   +
Sbjct: 66  IYIGSGTVSCPI 77

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
           +C IC    +    V +C H FC  C  +  R     C  C  
Sbjct: 17  RCFICRQAFQNP-VVTKCRHYFCESCALEHFRA-TPRCYICDQ 57

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPACRT 150
            C IC  ++ + ++   C  R    C+ K  +      CP C  
Sbjct: 17  ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 106 DVQCPICLGIIKKTRT----VMECLHRFCRECIDKSMRLGNNECPACRT 150
           D  CP C     +  +    V  C H  C  C+D     G   CP C T
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGT 51

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
           ++  + +C IC+    +   ++ C H FC++CIDK     +  CP CR
Sbjct: 11  QLTDEEECCICM--DGRADLILPCAHSFCQKCIDKWSDR-HRNCPICR 55

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 102 EIRKDVQCPICLGIIKKTRTVME--CLHRFCRECIDKSMRLG-NNECPACR 149
            +   ++CP+C        +V +  C H F   CI     L  ++ CP CR
Sbjct: 11  HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIV--PWLEQHDSCPVCR 59

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 72  EEDEENEDDSEG--PSSDTSGEK-PEFVFVE-LPEIRKDVQCPICLGIIKKTRTVME--C 125
                +        P+S  S +  PE +  E    + +++ CPIC     K     E  C
Sbjct: 2   GHHHHHHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPC 61

Query: 126 LHRFCRECIDKSMRLG-NNECPACRT 150
            H F + C+   + L  +  CP CR 
Sbjct: 62  HHYFHKPCVS--IWLQKSGTCPVCRC 85

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 104 RKDVQCPICLGIIKKTRT---VMECLHRFCRECIDKSMRLGNNECPACRT 150
              V+CP+C+  ++          C ++ CR C  +     N  CPACR 
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 58

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 7/162 (4%)

Query: 10  ESHHANNGEQLQGEEQQRQDSFQQSHAKQSRHERQQLELQQNEQQQLEEDQKDDEEVEGE 69
           +    N  +      Q    ++ +    +    +           +      + + ++  
Sbjct: 88  KDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNNTDTLKIL 147

Query: 70  GDEEDEENEDDSEGPSSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRF 129
                  N+     P      ++ +   +++   + ++ CPI     +      +C H F
Sbjct: 148 KVLPYIWNDPTCVIPDLQNPADEDD---LQIEGGKIELTCPITCKPYEAPLISRKCNHVF 204

Query: 130 CRECIDKSMRLGNN-ECP--ACRTHCASRRSLRDDPNYDALI 168
            R+ I   ++     +CP  AC     S R    DP  +   
Sbjct: 205 DRDGIQNYLQGYTTRDCPQAACSQVV-SMRDFVRDPIMELRC 245

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE--CPAC 148
           + +++++V CPICL I++K  T+ +C H FC +CI +          CP C
Sbjct: 14  VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE--CPAC 148
           L  ++ +  C +CL  +K+    +EC H FC+ CI +       +  CP C
Sbjct: 9   LENLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 102 EIRKDVQCPICLGIIKKTRTVME--CLHRFCRECIDKSMRLGNNECPACRT 150
           E+     C +CL   K    +    C H F R+C+ K + +    CP C  
Sbjct: 11  ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNM 60

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151
            V+C +CL  ++   + R +  C H F  EC+D  +   ++ CP CR  
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLT 52

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)

Query: 109 CPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
           C  C    K         EC H F   C+   ++  NN CP C+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQ 71

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 85  SSDTSGEKPEFVFVELPEIRKDVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLG 141
           SS +SG+ P + F       +   C +C+   +     R V+ C H F  +C+DK ++  
Sbjct: 2   SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLR-VLPCNHEFHAKCVDKWLKA- 59

Query: 142 NNECPACRT 150
           N  CP CR 
Sbjct: 60  NRTCPICRA 68

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDK-SMRLGNNECPACRT 150
            C IC  ++ + ++   C  R    C+ K         CP C  
Sbjct: 182 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
           C  C   IK    ++ C H FC +C     + G+  CP C 
Sbjct: 4   CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.5
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.48
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.48
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.48
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.47
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.45
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.43
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.42
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.42
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.41
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.39
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.39
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.38
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.37
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.34
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.33
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.33
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.32
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.32
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.29
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.28
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.28
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.28
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.27
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.24
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.24
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.23
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.2
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.18
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.18
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.16
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.15
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.14
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.13
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.11
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.06
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.06
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.05
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.03
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.01
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.01
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.99
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.98
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.94
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.94
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.88
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.88
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.84
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.73
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.72
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.69
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.65
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.6
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.59
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.58
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.5
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.47
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.42
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.31
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.16
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.5
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.42
3nw0_A	238	Non-structural maintenance of chromosomes element	96.58
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	95.92
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.3
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	93.23
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	93.14
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	91.8
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	86.85
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	86.79
3h9d_A	119	ATG8, microtubule-associated protein 1A/1B, light	82.71

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.50  E-value=7e-15  Score=128.61  Aligned_cols=75  Identities=25%  Similarity=0.661  Sum_probs=66.6

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      +..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|..
T Consensus        46 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~  120 (124)
T 3fl2_A           46 LSKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY  120 (124)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred             HHhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence            4456778999999999999997 89999999999999998555699999999987678999999999999998864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.48  E-value=1.9e-14  Score=115.42  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=60.0

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+.. ..+.+|..+.++|..+.
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~-~~l~~n~~l~~~i~~~~   72 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWC   72 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHHH
T ss_pred             CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh-hhCccCHHHHHHHHHHH
Confidence            5668999999999999997 89999999999999998657899999999876 56888999998886654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.48  E-value=1.6e-14  Score=132.33  Aligned_cols=78  Identities=53%  Similarity=1.069  Sum_probs=64.5

Q ss_pred             cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864           98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus        98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      +....+.+.+.|+||++.|.+|+++++|||+||..||..|+..+...||.||..+.....+.+|..+.++|..+++..
T Consensus        46 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~  123 (165)
T 2ckl_B           46 VSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR  123 (165)
T ss_dssp             ----CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC---
T ss_pred             cchhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcch
Confidence            344556778999999999999998569999999999999999657899999999977678899999999999988854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.47  E-value=3e-14  Score=117.83  Aligned_cols=71  Identities=21%  Similarity=0.534  Sum_probs=60.3

Q ss_pred             cccccccccccccccccceeecc-cCCccchhHHHhhhhc-CCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRL-GNNECPACRTHCASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~-CgH~FC~~CI~~~~~~-~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      .+.+.+.|+||+++|.+|++ ++ |||+||..||..|+.. +...||.||..+.....+.+|..+.+++..+..
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~   81 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN   81 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred             cCCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence            35678999999999999997 78 9999999999999974 346999999998655778899999888866543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.45  E-value=2e-13  Score=121.77  Aligned_cols=65  Identities=31%  Similarity=0.635  Sum_probs=52.3

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      .+++.|+||++.|.+|++ ++|||+||..||..|+. ....||.||.++..   ...+..+..++..++.
T Consensus        51 ~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~~  115 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMVN  115 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHHT
T ss_pred             cccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHHH
Confidence            346789999999999997 89999999999999998 56899999998865   2345556666655543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.43  E-value=7.1e-14  Score=119.32  Aligned_cols=78  Identities=27%  Similarity=0.723  Sum_probs=65.9

Q ss_pred             cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCC---CCCCCcchHHHHHhhcch
Q 011864           98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR---SLRDDPNYDALISALYPD  174 (476)
Q Consensus        98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~---~l~~n~~L~~li~~l~p~  174 (476)
                      ..+..+.+.+.|+||+++|.+|+++++|||+||..||..|+.. ...||.||..+....   .+.+|..+.+++..+++.
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~   85 (108)
T 2ckl_A            7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG   85 (108)
T ss_dssp             EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred             cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence            4455678899999999999999985599999999999999984 489999999987632   567889999999888886


Q ss_pred             hh
Q 011864          175 ID  176 (476)
Q Consensus       175 c~  176 (476)
                      ..
T Consensus        86 ~~   87 (108)
T 2ckl_A           86 LF   87 (108)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.42  E-value=8.6e-14  Score=114.54  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus        11 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~   77 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLL-NSPTDPFNRQMLTE-SMLEPVPELKEQIQAWM   77 (85)
T ss_dssp             CCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred             CchheECcccCchhcCCeE-CCCCCEECHHHHHHHHh-cCCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence            4678999999999999997 88999999999999998 45899999999986 57889999988886554

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.42  E-value=4.8e-14  Score=119.12  Aligned_cols=73  Identities=21%  Similarity=0.433  Sum_probs=61.0

Q ss_pred             ecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHh
Q 011864           97 FVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISA  170 (476)
Q Consensus        97 ~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~  170 (476)
                      ......+.+.+.|+||+++|.+|+++++|||+||..||..|+......||.||..+.. ..+..+..+..++..
T Consensus        13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~i~~~   85 (100)
T 3lrq_A           13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL-RELVNCRWAEEVTQQ   85 (100)
T ss_dssp             HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECTTHHHHHHH
T ss_pred             ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH-HHhHhhHHHHHHHHH
Confidence            3445567889999999999999997799999999999999999555799999999876 567777777776643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.41  E-value=6.6e-14  Score=127.11  Aligned_cols=74  Identities=23%  Similarity=0.649  Sum_probs=65.2

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcch
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPD  174 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~  174 (476)
                      +..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.....+.+|..+.+++..++|.
T Consensus        72 ~~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           72 LKKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             HHhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            3445678899999999999997 8999999999999999865568999999998755789999999999988875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.39  E-value=1.8e-13  Score=116.22  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      .+.+.+.||||+++|.+||+ ++|||+||+.||..||. ...+||.|+.++.. ..+.+|..|.++|..+.
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~   92 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM   92 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred             cCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence            35678999999999999997 88999999999999998 56899999999986 67899999998886654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.39  E-value=3.6e-13  Score=113.88  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             cccccccccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      .+.+.+.||||+++|.+||+ ++|| |+||+.||..||.. ...||+|+.++.. ..+.+|..|.++|..+.
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~   86 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred             cCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence            45678999999999999997 8999 99999999999984 5799999999986 67889999988886554

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=115.87  Aligned_cols=72  Identities=24%  Similarity=0.596  Sum_probs=61.0

Q ss_pred             ccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864           99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus        99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      .+..+.+.+.|+||++.|.+|+++++|||+||..||..|+. ....||.||..+.. ..+.+|..+.+++..+.
T Consensus        15 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~   86 (99)
T 2y43_A           15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN   86 (99)
T ss_dssp             GGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred             HHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence            34456678999999999999998559999999999999998 45899999999886 66888988888886554

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.37  E-value=8.4e-14  Score=111.55  Aligned_cols=66  Identities=26%  Similarity=0.750  Sum_probs=55.6

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcC------CCCCCCcccccccCCCCCCCcchHHHH
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG------NNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~------~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      ..+.+.+.|+||++.|.+|++ ++|||+||..||..|+...      ...||.||..+.. ..+.+|..+.+++
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~lv   78 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANIV   78 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCCC
T ss_pred             hhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHhh
Confidence            345678999999999999997 8999999999999999842      5689999999886 5677887776553

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.34  E-value=2.3e-13  Score=117.31  Aligned_cols=72  Identities=28%  Similarity=0.622  Sum_probs=59.6

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc------CCCCCCCcchHHHHHhhcch
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS------RRSLRDDPNYDALISALYPD  174 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~------~~~l~~n~~L~~li~~l~p~  174 (476)
                      .+.+++.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+..      ...+..|..+..++..++|.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~   88 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR   88 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred             CCCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence            35668999999999999997 79999999999999998656899999998864      24566777777777766663

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.33  E-value=4.8e-13  Score=108.00  Aligned_cols=67  Identities=31%  Similarity=0.795  Sum_probs=56.0

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcC-----CCCCCCcccccccCCCCCCCcchHHHH
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-----NNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-----~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      ...+.+.+.|+||++.|.+|+. ++|||+||..||..|+...     ...||.||..+.. ..+.+|..+.+++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v   84 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSSC
T ss_pred             HHhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHhh
Confidence            3446678899999999999996 8999999999999999852     5789999999886 5677777776554

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.33  E-value=5.8e-13  Score=115.56  Aligned_cols=76  Identities=29%  Similarity=0.505  Sum_probs=63.6

Q ss_pred             cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864           98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus        98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      ..+..+.+.+.|+||++++.+|++ ++|||+||..||..|+......||.||..+.. ..+.++..+..++..+...|
T Consensus        10 ~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C   85 (118)
T 3hct_A           10 EFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKC   85 (118)
T ss_dssp             CBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEEC
T ss_pred             hhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccceeEC
Confidence            355677889999999999999997 89999999999999998655699999999886 55667777888887766444

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=104.01  Aligned_cols=54  Identities=35%  Similarity=0.864  Sum_probs=47.6

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +..+.+.+.|+||++.|.+|+++++|||+||..||..|+.. ...||.||..+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   62 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence            34567789999999999999985699999999999999984 5899999998876

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.3e-13  Score=107.29  Aligned_cols=67  Identities=27%  Similarity=0.849  Sum_probs=56.3

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhc-----CCCCCCCcccccccCCCCCCCcchHHHH
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-----GNNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-----~~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      ...+.+.+.|+||++.+.+|+. ++|||+||..||..|+..     +...||.||..+.. ..+.+|..+.+++
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~v   84 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCCC
T ss_pred             HHHccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHhh
Confidence            3446678899999999999997 899999999999999974     25799999999886 6677887776554

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=103.80  Aligned_cols=55  Identities=25%  Similarity=0.674  Sum_probs=46.3

Q ss_pred             ccccccccccccccccccceeecc-cCCccchhHHHhhhhcC-CCCCCCcccccccCC
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVME-CLHRFCRECIDKSMRLG-NNECPACRTHCASRR  156 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~-CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~~~  156 (476)
                      ..+.+.+.|+||+++|.+|++ ++ |||+||..||..|+... ...||.||..+....
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             ccCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            345678999999999999997 78 99999999999999843 368999999765433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.29  E-value=1.2e-12  Score=127.80  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      ...+.||||+++|.+||+ ++|||+||..||..|+..+..+||+|+.++.. ..+.+|..+.++|..+..
T Consensus       206 ~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~-~~l~~n~~l~~~i~~~~~  273 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFIS  273 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHHT
T ss_pred             CcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCch-hcCcccHHHHHHHHHHHH
Confidence            457899999999999997 89999999999999998655569999999976 678999999999876653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=105.35  Aligned_cols=57  Identities=19%  Similarity=0.492  Sum_probs=47.8

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcch
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNY  164 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L  164 (476)
                      ...+.|+||++.|.+|+. ++|||+||..||..|+. ....||+||..+.  ..+.++..+
T Consensus        13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~l   69 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFR-ATPRCYICDQPTG--GIFNPAKEL   69 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC--SCCEECHHH
T ss_pred             CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc--ccCCcHHHH
Confidence            446799999999999996 99999999999999998 4579999999886  345555433

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=2.1e-12  Score=100.45  Aligned_cols=53  Identities=23%  Similarity=0.650  Sum_probs=46.6

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ..+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||.||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hcCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            345678899999999999997 89999999999999996456789999998875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=108.97  Aligned_cols=69  Identities=20%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             ccccccccccccccccceeec-ccCCccchhHHHhhhhcC-----CCCCCC--cccc-cccCCCCCCCcchHHHHHhhcc
Q 011864          103 IRKDVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLG-----NNECPA--CRTH-CASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~-~CgH~FC~~CI~~~~~~~-----~~~CP~--CR~~-~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      ....+.||||+++|.+||+ + .|||+||..||..||..+     ...||+  |+.. +.. ..+.+|..|..+|..+..
T Consensus         4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~-~~L~pn~~L~~~I~~~~~   81 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK-SDLIQDEALRRAIENHNK   81 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG-GGEEECHHHHHHHHHHHT
T ss_pred             CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH-hhCcCCHHHHHHHHHHHH
Confidence            3567899999999999997 6 499999999999999842     468999  9877 554 678899999988876643

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.27  E-value=1.4e-12  Score=111.32  Aligned_cols=71  Identities=31%  Similarity=0.758  Sum_probs=59.1

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcC--CCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      ..+.+.+.|+||++.+.+|++ ++|||+||..||..|+...  ...||.||..+.. ..+.++..+.+++..+..
T Consensus        16 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           16 NAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHH
T ss_pred             HhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHH
Confidence            345667899999999999997 8999999999999999843  2489999999886 667888888877766554

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.25  E-value=3.1e-12  Score=119.42  Aligned_cols=70  Identities=14%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      ..+...+.||||+++|.+||+ ++|||+||..||..||..+..+||.|+.++.. ..+.+|..|.++|..+.
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~  170 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI  170 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred             cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence            446788999999999999997 89999999999999998543479999999986 57999999999987654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.24  E-value=1.7e-12  Score=116.58  Aligned_cols=83  Identities=19%  Similarity=0.417  Sum_probs=61.4

Q ss_pred             CCccee-cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccC--------CCCCCCc
Q 011864           92 KPEFVF-VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASR--------RSLRDDP  162 (476)
Q Consensus        92 ~~e~~~-~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~--------~~l~~n~  162 (476)
                      .+++.. .....+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||.||..+...        ..+.++.
T Consensus        16 ~~g~~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~   94 (141)
T 3knv_A           16 QPGFSKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDN   94 (141)
T ss_dssp             CCSBCGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECH
T ss_pred             CCCcchhhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccH
Confidence            344433 344678899999999999999997 899999999999999986656999999975321        1233555


Q ss_pred             chHHHHHhhcchh
Q 011864          163 NYDALISALYPDI  175 (476)
Q Consensus       163 ~L~~li~~l~p~c  175 (476)
                      .+...|..+...|
T Consensus        95 ~~~~~i~~L~v~C  107 (141)
T 3knv_A           95 AARREVESLPAVC  107 (141)
T ss_dssp             HHHHHHHTSEEEC
T ss_pred             HHHHHHccccccc
Confidence            5666665554433

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7.5e-12  Score=98.73  Aligned_cols=54  Identities=37%  Similarity=0.894  Sum_probs=46.6

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCccccccc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPACRTHCAS  154 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~CR~~~~~  154 (476)
                      ...+.+.+.|+||++.+.+|+. ++|||+||..||..|+..  ....||.||..+..
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            3446678899999999999997 799999999999999972  45689999998865

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.23  E-value=3e-12  Score=110.43  Aligned_cols=74  Identities=24%  Similarity=0.578  Sum_probs=59.2

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchh
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDI  175 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c  175 (476)
                      ..+.+.+.|+||++.|.+|+. ++|||+||..||..|+......||.||..+.......++..+..++..+...|
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C   91 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKC   91 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEEC
T ss_pred             HhccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCC
Confidence            345678899999999999997 89999999999999998656799999999987444455666666665554433

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.20  E-value=5.8e-12  Score=115.68  Aligned_cols=79  Identities=28%  Similarity=0.497  Sum_probs=64.4

Q ss_pred             cceecccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcc
Q 011864           94 EFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYP  173 (476)
Q Consensus        94 e~~~~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p  173 (476)
                      ++...++..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||.||..+.. ..+.++..+..+|..+..
T Consensus         6 g~~~~~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~v   83 (170)
T 3hcs_A            6 GYDVEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMV   83 (170)
T ss_dssp             CBCSEESSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEE
T ss_pred             CCChhhccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhccc
Confidence            3444466678899999999999999997 89999999999999998555699999999886 446677777777766654


Q ss_pred             h
Q 011864          174 D  174 (476)
Q Consensus       174 ~  174 (476)
                      .
T Consensus        84 ~   84 (170)
T 3hcs_A           84 K   84 (170)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=100.72  Aligned_cols=53  Identities=26%  Similarity=0.770  Sum_probs=45.9

Q ss_pred             cccccccccccccccccc----ceeecccCCccchhHHHhhhhcC--CCCCCCccccccc
Q 011864          101 PEIRKDVQCPICLGIIKK----TRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCAS  154 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~----Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~~~~~  154 (476)
                      ..+.+.+.|+||++.|.+    |+. ++|||+||..||..|+...  ...||.||..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            345678899999999998    886 8999999999999999853  4789999998765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.3e-11  Score=94.81  Aligned_cols=48  Identities=40%  Similarity=0.975  Sum_probs=42.0

Q ss_pred             cccccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC  148 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~C  148 (476)
                      ...+.+.+.|+||++.|.+|+. ++|||+||..||..|+..  ....||.|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456778999999999999997 799999999999999984  45689998

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.16  E-value=1.4e-11  Score=96.54  Aligned_cols=50  Identities=34%  Similarity=0.826  Sum_probs=43.4

Q ss_pred             cccccccccccccccce------eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv------~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.+.|+||++.+.+|+      .+++|||.||..||..|+.. ...||.||..+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence            45778999999999882      34999999999999999984 4799999999886

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.6e-11  Score=96.81  Aligned_cols=49  Identities=24%  Similarity=0.596  Sum_probs=43.6

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.+.|+||++.+.+|+. ++|||.||..||..|+. ....||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASW-LGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence            346789999999999997 89999999999999998 44899999998865

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.14  E-value=1.6e-11  Score=95.15  Aligned_cols=49  Identities=31%  Similarity=0.698  Sum_probs=42.7

Q ss_pred             ccccccccc-ccccce---eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLG-IIKKTR---TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~-~~~~Pv---~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ++.|+||++ .+.+|+   .+++|||+||..||..|+..+...||.||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            578999999 999994   2489999999999999987566789999998875

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.2e-11  Score=119.43  Aligned_cols=69  Identities=20%  Similarity=0.388  Sum_probs=59.0

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhc-CCCCCCC--cccccccCCCCCCCcchHHHHHh
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL-GNNECPA--CRTHCASRRSLRDDPNYDALISA  170 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~-~~~~CP~--CR~~~~~~~~l~~n~~L~~li~~  170 (476)
                      ......+.||||+.+|.+||+++.|||+||..||..||.. +...||+  |+..+.. ..+.+|..|.+++..
T Consensus       176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~-~dL~pN~~L~~lve~  247 (267)
T 3htk_C          176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM-RDFVRDPIMELRCKI  247 (267)
T ss_dssp             CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG-GGEEECHHHHHHHHH
T ss_pred             cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch-hhCCcCHHHHHHHHH
Confidence            3457789999999999999986699999999999999984 3468999  9998876 678999988887743

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2e-11  Score=94.88  Aligned_cols=50  Identities=34%  Similarity=0.809  Sum_probs=43.5

Q ss_pred             ccccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          103 IRKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +.+.+.|+||++.|.+|       + +++|||.||..||..|+.. ...||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            45678999999999988       5 4999999999999999984 5799999998763

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=90.25  Aligned_cols=46  Identities=30%  Similarity=0.865  Sum_probs=40.4

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhc--CCCCCCCc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRL--GNNECPAC  148 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~--~~~~CP~C  148 (476)
                      .+.+.+.|+||++.+.+|+. ++|||+||..||..|+..  ....||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45668899999999999996 899999999999999763  55789998

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.09  E-value=6.3e-11  Score=94.78  Aligned_cols=50  Identities=24%  Similarity=0.624  Sum_probs=42.8

Q ss_pred             cccccccccccccccce--eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKTR--TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv--~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...+.|+||++.|..+.  .+++|+|.||..||..|+. ....||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence            45678999999998663  3479999999999999998 45899999999887

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.07  E-value=3.2e-11  Score=92.28  Aligned_cols=49  Identities=35%  Similarity=0.829  Sum_probs=42.4

Q ss_pred             ccccccccccccccce------eecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTR------TVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv------~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +.+.|+||++.+.+|+      .+++|||.||..||..|+.. ...||.||..+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence            3578999999999872      34899999999999999984 5799999998875

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.06  E-value=5e-11  Score=92.78  Aligned_cols=49  Identities=37%  Similarity=0.828  Sum_probs=42.8

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ....|+||++.+.+|+.+++|||.||..||..|+.. ...||.||..+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            356899999999998656999999999999999984 4899999998764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.06  E-value=1.2e-10  Score=94.47  Aligned_cols=53  Identities=26%  Similarity=0.635  Sum_probs=43.4

Q ss_pred             cccccccccccccccc--cceeecc--cCCccchhHHHhhhhcCCCCCCCcccccccC
Q 011864          102 EIRKDVQCPICLGIIK--KTRTVME--CLHRFCRECIDKSMRLGNNECPACRTHCASR  155 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~--~Pv~i~~--CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~  155 (476)
                      .+.+++.||||++.+.  ++++ ++  |||.||..||..++......||.||..+...
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINF-FPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTC-CSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccccCCcCCccCccCccccccc-cccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            3567889999999885  3443 55  9999999999999875668999999998763

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=8.8e-11  Score=93.43  Aligned_cols=52  Identities=27%  Similarity=0.710  Sum_probs=43.5

Q ss_pred             cccccccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          102 EIRKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...+...|+||++.|..+  +..++|+|.||..||..|+.. ...||+||..+..
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            345678899999999877  334899999999999999984 4799999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=6e-11  Score=92.95  Aligned_cols=50  Identities=30%  Similarity=0.789  Sum_probs=44.1

Q ss_pred             cccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       102 ~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.+.+.|+||++.+.+ +. ++|||.||..||..|+. ....||.||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred             cCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence            45567899999999999 64 99999999999999998 66899999998875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.03  E-value=1.2e-10  Score=86.76  Aligned_cols=48  Identities=31%  Similarity=0.803  Sum_probs=40.7

Q ss_pred             ccccccccccccccc---ceeecc-cCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          104 RKDVQCPICLGIIKK---TRTVME-CLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~---Pv~i~~-CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      .+...|+||++.|..   ++. ++ |||.||..||..|+. ....||.||..+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence            456789999999987   565 55 999999999999998 4689999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=90.00  Aligned_cols=49  Identities=31%  Similarity=0.829  Sum_probs=40.5

Q ss_pred             ccccccccccccc--cceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ....|+||++.|.  .++.+++|||.||..||..|+.. ...||+||..+..
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3568999999885  23445899999999999999984 4789999998765

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.5e-10  Score=91.65  Aligned_cols=51  Identities=25%  Similarity=0.630  Sum_probs=42.8

Q ss_pred             cccccccccccccccccee--ecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          103 IRKDVQCPICLGIIKKTRT--VMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~--i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +.....|+||++.|..+..  +++|+|.||..||..|+.. ...||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            4557789999999987643  3599999999999999984 4699999998865

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.99  E-value=1.8e-10  Score=95.43  Aligned_cols=50  Identities=26%  Similarity=0.727  Sum_probs=42.3

Q ss_pred             cccccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          103 IRKDVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ......|+||++.|..   ++. ++|||.||..||..|+. ....||+||..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence            4567889999998876   554 89999999999999998 55799999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.98  E-value=2.2e-10  Score=85.31  Aligned_cols=47  Identities=32%  Similarity=0.766  Sum_probs=39.9

Q ss_pred             ccccccccccccc---ceeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          106 DVQCPICLGIIKK---TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       106 ~l~C~ICl~~~~~---Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      ...|+||++.|.+   ++.+++|||.||..||..|+... ..||+||..+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            5689999999865   34459999999999999999855 89999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.94  E-value=4.6e-10  Score=96.12  Aligned_cols=50  Identities=24%  Similarity=0.612  Sum_probs=41.2

Q ss_pred             cccccccccccccce-----------------eecccCCccchhHHHhhhhc----CCCCCCCcccccccC
Q 011864          106 DVQCPICLGIIKKTR-----------------TVMECLHRFCRECIDKSMRL----GNNECPACRTHCASR  155 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv-----------------~i~~CgH~FC~~CI~~~~~~----~~~~CP~CR~~~~~~  155 (476)
                      +..|+||++.|..|+                 .+++|+|.||..||..|+..    ....||+||..+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            468999999997654                 14899999999999999952    456999999988763

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=3e-10  Score=85.84  Aligned_cols=45  Identities=27%  Similarity=0.750  Sum_probs=39.6

Q ss_pred             ccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +.+.|+||++.|.+|+. ++|||+||..||..|    ...||.||..+..
T Consensus         5 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             cCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            46789999999999996 999999999999873    4689999998765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.88  E-value=6.5e-10  Score=96.63  Aligned_cols=49  Identities=35%  Similarity=0.883  Sum_probs=43.6

Q ss_pred             cccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.+.|+||++.|.+|       +. ++|||+||..||..|+. ....||.||..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLK-NANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence            3568999999999998       64 99999999999999998 45799999998876

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.88  E-value=2.6e-10  Score=91.03  Aligned_cols=49  Identities=24%  Similarity=0.623  Sum_probs=43.2

Q ss_pred             cccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +..+.+.+.|+||++.+.+|++ ++|||. ||..|+..|     ..||.||..+..
T Consensus        18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            3456678899999999999997 899999 999999988     679999998865

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.6e-09  Score=87.90  Aligned_cols=49  Identities=27%  Similarity=0.543  Sum_probs=40.0

Q ss_pred             cccccccccccccc--------------ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKK--------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~--------------Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ++..|+||++.|..              ++.+++|+|.||..||..|+. ...+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence            35679999998876              445456999999999999998 45799999998754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=2.5e-09  Score=110.47  Aligned_cols=53  Identities=23%  Similarity=0.459  Sum_probs=45.8

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCC
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR  156 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~  156 (476)
                      ......|+||++.+.+|+. ++|||.||..||..|+......||.||..+....
T Consensus       329 ~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          329 GSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             TTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             cCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            3445799999999999996 9999999999999999855689999999887633

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=3.7e-09  Score=84.35  Aligned_cols=49  Identities=24%  Similarity=0.615  Sum_probs=41.7

Q ss_pred             cccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          100 LPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       100 ~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...+.+.+.|+||++.+.+|++ ++|||. ||..|+..     ...||.||..+..
T Consensus        19 ~~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           19 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             HHcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            3445667899999999999996 999999 99999964     2689999998875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.72  E-value=6.6e-09  Score=88.95  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=41.1

Q ss_pred             ccccccccccccccc-----------------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          105 KDVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       105 e~l~C~ICl~~~~~P-----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      +...|+||++.|..+                 +.+++|+|.||..||..|+. ...+||+||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence            457899999998865                 55589999999999999998 4689999999764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.69  E-value=3.4e-09  Score=92.05  Aligned_cols=49  Identities=35%  Similarity=0.866  Sum_probs=43.2

Q ss_pred             cccccccccccccccc-------eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          104 RKDVQCPICLGIIKKT-------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P-------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+...|+||++.|..|       + +++|||.||..||..|+. ....||.||..+..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLK-NANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence            4578899999999987       5 489999999999999998 45799999998876

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.65  E-value=1e-08  Score=79.59  Aligned_cols=48  Identities=29%  Similarity=0.521  Sum_probs=41.9

Q ss_pred             ccccccccccccccceeec--ccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~--~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +...|+||++.+.+++. +  ||||. ||..|+..|+. ....||.||.++..
T Consensus         7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhc
Confidence            45689999999999986 5  99999 89999999997 45789999998754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.60  E-value=7.1e-09  Score=83.95  Aligned_cols=48  Identities=21%  Similarity=0.623  Sum_probs=41.8

Q ss_pred             ccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ..+.+...|+||++.+.+|+. +||||. ||..|+..|.     .||.||..+..
T Consensus        13 ~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           13 RKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             HcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            345667899999999999997 899999 9999998763     79999998876

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.59  E-value=1.9e-08  Score=77.77  Aligned_cols=47  Identities=17%  Similarity=0.456  Sum_probs=40.8

Q ss_pred             cccccccccccccceeec--ccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVM--ECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~--~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...|+||++.+.+++. +  ||||. ||..|+..|+. ....||.||.++..
T Consensus         7 ~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence            4579999999999975 5  99998 99999999987 44789999998764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.58  E-value=1.3e-08  Score=78.63  Aligned_cols=53  Identities=8%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             cccccccccccccceeec-ccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864          106 DVQCPICLGIIKKTRTVM-ECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD  161 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~-~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n  161 (476)
                      .+.||||++++.+||. + +|||+||+.||.+|+.. ...||+++.++.. .++.++
T Consensus         3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~-~~Lip~   56 (61)
T 2bay_A            3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI-EEIVEI   56 (61)
T ss_dssp             -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG-GGCEEC
T ss_pred             eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh-hhcEEC
Confidence            4789999999999997 6 99999999999999984 3679999998876 334433

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.50  E-value=1.4e-08  Score=88.42  Aligned_cols=47  Identities=23%  Similarity=0.430  Sum_probs=0.5

Q ss_pred             cccccccccccccc-----------------eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          106 DVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       106 ~l~C~ICl~~~~~P-----------------v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      ...|+||++.|..+                 +..++|+|.||..||..|+. ...+||+||..+.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence            46899999998763                 33368999999999999998 4689999999764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.47  E-value=2.8e-08  Score=101.56  Aligned_cols=50  Identities=24%  Similarity=0.656  Sum_probs=43.8

Q ss_pred             ccccccccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864           99 ELPEIRKDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus        99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+..+.+.+.|+||++.+.+|++ ++|||. ||..|+..|     ..||.||.++..
T Consensus       288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            34456778999999999999997 899999 999999987     579999998865

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.42  E-value=8.9e-08  Score=79.42  Aligned_cols=47  Identities=28%  Similarity=0.750  Sum_probs=38.7

Q ss_pred             ccccccccccccccceee--cccCCccchhHHHhhhhc----C---CCCCCC--cccc
Q 011864          105 KDVQCPICLGIIKKTRTV--MECLHRFCRECIDKSMRL----G---NNECPA--CRTH  151 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i--~~CgH~FC~~CI~~~~~~----~---~~~CP~--CR~~  151 (476)
                      +.+.|+||++.+..|+++  .+|||.||..||..+|..    +   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            367899999999988753  379999999999999863    2   248999  9987

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.4e-07  Score=74.20  Aligned_cols=44  Identities=23%  Similarity=0.662  Sum_probs=38.4

Q ss_pred             ccccccccccccccceeecccCCc-cchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMECLHR-FCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~CgH~-FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +...|+||++.+.+++. +||||. ||..|+..     ...||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            35689999999999996 999999 99999984     3689999998875

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=3.7e-07  Score=74.19  Aligned_cols=52  Identities=17%  Similarity=0.404  Sum_probs=41.6

Q ss_pred             cccccccccccc--cceeecccC-----CccchhHHHhhhhcC-CCCCCCcccccccCCCC
Q 011864          106 DVQCPICLGIIK--KTRTVMECL-----HRFCRECIDKSMRLG-NNECPACRTHCASRRSL  158 (476)
Q Consensus       106 ~l~C~ICl~~~~--~Pv~i~~Cg-----H~FC~~CI~~~~~~~-~~~CP~CR~~~~~~~~l  158 (476)
                      ...|+||++.+.  +++ ++||.     |.|+..||.+|+... ...||+||..+.....+
T Consensus        15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~   74 (80)
T 2d8s_A           15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL   74 (80)
T ss_dssp             SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred             CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence            557999998774  566 48996     999999999999853 36999999988764333

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=1.4e-06  Score=69.91  Aligned_cols=49  Identities=20%  Similarity=0.508  Sum_probs=41.0

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~  154 (476)
                      ...|+||..++..-..+..|+|.|+..||.+||+.. ...||+|+..+..
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            457999999998666667899999999999999843 3789999987653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.08  E-value=1.9e-06  Score=72.49  Aligned_cols=47  Identities=28%  Similarity=0.605  Sum_probs=41.9

Q ss_pred             cccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       108 ~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .|++|.-.+..-..++||.|.||+.|+..|.+.+.+.||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            69999988887766799999999999999998778999999998875

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.50  E-value=2e-05  Score=80.00  Aligned_cols=49  Identities=16%  Similarity=0.569  Sum_probs=37.9

Q ss_pred             ccccccccccccc----cee-e--cccCCccchhHHHhhhhcC----------CCCCCCccccccc
Q 011864          106 DVQCPICLGIIKK----TRT-V--MECLHRFCRECIDKSMRLG----------NNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~----Pv~-i--~~CgH~FC~~CI~~~~~~~----------~~~CP~CR~~~~~  154 (476)
                      ...|+||+..+..    |.. +  ..|+|.|+..||.+|+...          .+.||.|+.+++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            4579999998875    311 1  3799999999999999731          1479999998875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.42  E-value=9.5e-05  Score=56.61  Aligned_cols=48  Identities=21%  Similarity=0.449  Sum_probs=38.8

Q ss_pred             cccccccccccccceeecccC--C---ccchhHHHhhhhc-CCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECL--H---RFCRECIDKSMRL-GNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~Cg--H---~FC~~CI~~~~~~-~~~~CP~CR~~~~~  154 (476)
                      ...|.||+.....+. +.||.  +   .|+..||.+|+.. ++..||+|+..+..
T Consensus         6 ~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            6 VPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            457999998777776 48865  4   8999999999974 46799999998753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.58  E-value=0.0012  Score=63.86  Aligned_cols=49  Identities=20%  Similarity=0.508  Sum_probs=41.4

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcC-CCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG-NNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~-~~~CP~CR~~~~~  154 (476)
                      ...|.||..++..-+.+..|+|.|+..|+..|++.. ...||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            567999999999877777799999999999999843 4599999997654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=95.92  E-value=0.0051  Score=69.87  Aligned_cols=67  Identities=12%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             ccccccccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +.+++.|||-++++.+||. ++.| ++|-+.+|.+|+.. ..+||.=|.+++. ..+.||..|...|....
T Consensus       888 iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~  955 (968)
T 3m62_A          888 VPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFK  955 (968)
T ss_dssp             SCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred             CcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHH
Confidence            3568999999999999996 8997 69999999999984 5799999999986 56889998888886554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.30  E-value=0.0064  Score=50.31  Aligned_cols=75  Identities=12%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             ccccccccccc-ccccee-ecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhcchhhhh-HHH
Q 011864          105 KDVQCPICLGI-IKKTRT-VMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKY-EEE  181 (476)
Q Consensus       105 e~l~C~ICl~~-~~~Pv~-i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~p~c~~~-ee~  181 (476)
                      +++.|+||.+. +..|+. .+.|+|.||..|+..+....... .  +..+..  .+. ...+      -...|..| .+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~-~--~h~l~~--~~~-~~~~------~~~~C~~H~~e~   69 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPF-T--GHRLIE--PIP-DSHI------RGLMCLEHEDEK   69 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSS-T--TCCBSS--CCC-SCCS------SCCCCSSCSSSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCcc-C--CCeeec--ccc-ccCc------cCCcCcCcCCCc
Confidence            35789999975 667763 28999999999999844311110 0  111110  000 0000      12358888 477


Q ss_pred             HHhccHHHHH
Q 011864          182 ELAFHEEERT  191 (476)
Q Consensus       182 l~~fceeeq~  191 (476)
                      +.+||.+++.
T Consensus        70 l~~fC~~~~~   79 (101)
T 2jun_A           70 VNMYCVTDDQ   79 (101)
T ss_dssp             CCEEETTTTE
T ss_pred             ceEECCCCCC
Confidence            8899987653

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.14  E-value=0.036  Score=56.75  Aligned_cols=66  Identities=21%  Similarity=0.396  Sum_probs=50.3

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISAL  171 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l  171 (476)
                      .-.+.|||-...+..|+....|.|.-|.+- ..|+.    .....||+|.+.+.. .++..+..+..++...
T Consensus       247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          247 IMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQNC  316 (371)
T ss_dssp             EEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTTS
T ss_pred             EEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHhc
Confidence            346899999999999999899999977764 33332    356799999998876 6677777777766443

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=91.80  E-value=0.079  Score=54.06  Aligned_cols=65  Identities=20%  Similarity=0.362  Sum_probs=50.2

Q ss_pred             cccccccccccccccceeecccCCccchhHHHhhhh----cCCCCCCCcccccccCCCCCCCcchHHHHHh
Q 011864          104 RKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMR----LGNNECPACRTHCASRRSLRDDPNYDALISA  170 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~----~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~  170 (476)
                      .-.+.|||-...+..|+....|.|.-|.+- ..|+.    .+...||+|.+.+.. .++..+..+..++..
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILND  281 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHh
Confidence            447899999999999998899999977763 33443    345799999998876 567777777777644

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=86.85  E-value=0.53  Score=38.59  Aligned_cols=49  Identities=31%  Similarity=0.619  Sum_probs=38.1

Q ss_pred             ccccccccccccc-----c-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~-----P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .-.|.||.+.+--     + |.+-.|+-..|..|+.--.+.++..||.|.+.+..
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr   70 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence            4579999987431     1 33456888999999988777788999999998863

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=86.79  E-value=1  Score=36.26  Aligned_cols=43  Identities=30%  Similarity=0.766  Sum_probs=32.6

Q ss_pred             ccccccccccccccceeeccc----CCccchhHHHhhhhc----CCCCCCCc
Q 011864          105 KDVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL----GNNECPAC  148 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~C----gH~FC~~CI~~~~~~----~~~~CP~C  148 (476)
                      ..+.|.+|.+.+.+..+ ..|    .|.||..|-...++.    ..-.||.=
T Consensus        14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG   64 (93)
T 2cs3_A           14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   64 (93)
T ss_dssp             CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence            46789999999998865 445    699999999998872    12357653

>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0

Probab=82.71  E-value=0.77  Score=39.66  Aligned_cols=78  Identities=13%  Similarity=0.184  Sum_probs=61.1

Q ss_pred             EEEEEeecCCCCCCCCCCCccccCCCchhhhhhc-----cCCCccc-eEEEEEecccccCCCCCCCCCChhhhhhccccc
Q 011864          377 VRLMLVSADTQCAPSLQQPYLCCQPSLSVKQLCE-----TPLQAEE-VEILMVKERLDAKGNQSTPIPTTDQLQILEGQE  450 (476)
Q Consensus       377 ~~l~l~~~d~~~~p~l~~p~l~c~pt~~v~~l~~-----~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  450 (476)
                      |.|++-......+|.|.+--.-...++||-++..     +.+.+++ |=+|| .+.   .       |+.        ..
T Consensus        32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n~~---~-------p~~--------~~   92 (119)
T 3h9d_A           32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT-NDT---V-------LPS--------SA   92 (119)
T ss_dssp             EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE-TTE---E-------CCT--------TS
T ss_pred             EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE-CCc---C-------CCc--------cc
Confidence            7888888888999999999889999999999877     7788777 44444 211   1       111        36


Q ss_pred             ccccccccccCCCCcchhhhhhh
Q 011864          451 TLAGLRVNHTSNTDHLILAYRQK  473 (476)
Q Consensus       451 ~l~~l~~~~~~~~~~l~~~y~~k  473 (476)
                      ||++|+..|-...|.|||.|..-
T Consensus        93 ~m~~lY~~~kd~DGfLyv~Ys~e  115 (119)
T 3h9d_A           93 QMADIYSKYKDEDGFLYMKYSGE  115 (119)
T ss_dssp             BHHHHHHHHCCTTSCEEEEEECC
T ss_pred             hHHHHHHHcCCCCCeEEEEEecc
Confidence            89999999988899999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	476
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-12
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	8e-11
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-09
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-08
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-08
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	5e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-07
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-06
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-05
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-04
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-04
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	5e-04

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 98  VELPE-IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRR 156
           V+ P    K + C IC  I+        C H FCR CI + +++  + CP+CR  C    
Sbjct: 14  VDFPAHFVKSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC-FPT 71

Query: 157 SLRDDPNYDALISAL 171
            L       + ++ L
Sbjct: 72  DLE--SPVKSFLNIL 84

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 108 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS-RRSLRDDPNYDA 166
           +CPICL         + CLH FC  CI + +R  N  CP C+    S   ++  D  +  
Sbjct: 7   RCPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESVVHTIESDSEFGD 65

Query: 167 LI 168
            +
Sbjct: 66  QL 67

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 8e-11
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDP 162
           C IC    K  + +  C H  C  C+          CP CR        +  DP
Sbjct: 26  CKICAENDKDVK-IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 78

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 87  DTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNNE 144
           D S  + E V   +  ++K ++CPICL +IK+  +  +C H FC+ C+ K +  + G ++
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQ 60

Query: 145 CPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEE 181
           CP C+    ++RSL++   +  L+  L   I  ++ +
Sbjct: 61  CPLCKNDI-TKRSLQESTRFSQLVEELLKIICAFQLD 96

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 106 DVQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
            V+C +CL  ++   + R +  C H F  EC+D  +   ++ CP CR 
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRL 51

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151
           E  + ++C  C    K  +  + CLH  C  C++ S      +CP C+  
Sbjct: 2   EEFQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAP 46

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 107 VQCPICLGIIK---KTRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
           V+CP+C+  ++          C ++ CR C  +     N  CPACR 
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRK 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 5e-07
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 106 DVQCPICLGII----KKTRTVMECLHRFCRECIDKSMRLGNNECPACRTH 151
           D  CP C             V  C H  C  C+D     G   CP C T 
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTP 52

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 99  ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSL 158
            L  + K ++C  C  I+++   +  C H FC  C+   +      CP C T     + L
Sbjct: 15  ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI---GTGCPVCYTPA-WIQDL 70

Query: 159 RDDPNYDALISAL 171
           + +   D++I   
Sbjct: 71  KINRQLDSMIQLC 83

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRD 160
           PE  +  +CPI L ++K    V      + R  I K +  G+  CP  +        L  
Sbjct: 3   PEFPEYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETL-LHAGLTP 60

Query: 161 DPNYDALISA 170
           +    +LI+ 
Sbjct: 61  NYVLKSLIAL 70

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 102 EIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHC 152
           +I   +   I   ++++   +      + R+ I++ ++   +  P  R+  
Sbjct: 3   DIPDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 52

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 109 CPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACR 149
           C I   + ++     +    F +  +++ ++      P   
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-DTGNDPITN 42

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 6/68 (8%), Positives = 18/68 (26%), Gaps = 3/68 (4%)

Query: 85  SSDTSGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE 144
            S    ++ E  + +  +   +   PI   ++     +        R  I + +     +
Sbjct: 4   GSSGLQQQEEETYADACD---EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTD 60

Query: 145 CPACRTHC 152
                   
Sbjct: 61  PFNRSPLT 68

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 23/95 (24%)

Query: 85  SSDTSGEKPEFV--FVELPEIRKDVQCPICLGII-----------------KKTRTVMEC 125
           SS +SGE  + +  + E  ++  +  C IC+  +                      + +C
Sbjct: 2   SSGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC 61

Query: 126 LHRFCRECIDKSMRLGNNE----CPACRTHCASRR 156
            H F   C+      GN +    CP+C+T    + 
Sbjct: 62  SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 5/47 (10%)

Query: 109 CPICLGIIKKTRTVME----CLHRFCRECIDKSMRLG-NNECPACRT 150
           C IC   +   R         L    R C+   + +  N  C  C  
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 12/59 (20%), Positives = 15/59 (25%), Gaps = 18/59 (30%)

Query: 109 CPICLGIIKK-----------------TRTVMECLHRFCRECIDKSMRLGNNECPACRT 150
           C IC   I                   T     C H F   CI + ++     CP    
Sbjct: 24  CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNR 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.48
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.47
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.45
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.42
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.42
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.27
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.18
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.18
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.12
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.07
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.03
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.78
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.7
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.44
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.81
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	88.74
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	86.19
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	84.71

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=9.2e-15  Score=117.02  Aligned_cols=68  Identities=13%  Similarity=0.157  Sum_probs=60.5

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +.+++.||||+++|.+||+ ++|||+||..||..|+..+...||.|+.++.. ..+.+|..|.++|+.+.
T Consensus         4 iP~~l~CpIc~~l~~dPv~-~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~-~~l~pN~~L~~~I~~~l   71 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ-EQLIPNLAMKEVIDAFI   71 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG-GGCEECHHHHHHHHHHH
T ss_pred             CCccccCcCcCchhhhhcc-cCCcCeecHHHHHHHHhcCCccCCCccccccc-cccccHHHHHHHHHHHH
Confidence            4678999999999999996 89999999999999998666789999999876 56889999999987654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=1.4e-14  Score=115.37  Aligned_cols=67  Identities=21%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             ccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhh
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAL  171 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l  171 (476)
                      +.++|.||||+++|.+||+ ++|||+||..||..|+..+...||.|+.++.. ..+.+|..|.++|..+
T Consensus         5 iP~~l~CpIc~~~m~dPV~-~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~-~~l~pN~~L~~~I~~~   71 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLH-AGLTPNYVLKSLIALW   71 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS-CCCEECTTTHHHHHHH
T ss_pred             CCccCCCcCcCchhhCceE-ccCCCcchHHHHHHHHHHCCCCCCcccccCCc-ccccchHHHHHHHHHH
Confidence            5678999999999999997 89999999999999998666789999999886 6688999999998665

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.4e-14  Score=117.97  Aligned_cols=67  Identities=25%  Similarity=0.621  Sum_probs=54.4

Q ss_pred             ccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHH
Q 011864          101 PEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI  168 (476)
Q Consensus       101 ~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li  168 (476)
                      .++.+.+.|+||++++.+|++ ++|||+||..||..|++.+...||.||.++.......+...+.+++
T Consensus        18 ~d~~~~l~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          18 AHFVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             hhhccCcCCccCCcchhccee-cCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            445567899999999999997 8999999999999999866678999999988644444555555544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=121.93  Aligned_cols=72  Identities=31%  Similarity=0.755  Sum_probs=60.5

Q ss_pred             ccccccccccccccccccccceeecccCCccchhHHHhhhhcC--CCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864           99 ELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG--NNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus        99 ~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~--~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      .+..+.+.+.||||+++|.+|++ ++|||+||..||..|+...  ...||.||..+.. ..+.++..+.+++..+.
T Consensus        14 ~~~~l~~~l~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          14 VINAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHH
T ss_pred             HHHhcccCcCCCccCchhCCeEE-cCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence            44556778999999999999997 8999999999999999743  3589999999876 67888988888886554

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.3e-14  Score=118.69  Aligned_cols=69  Identities=25%  Similarity=0.617  Sum_probs=58.8

Q ss_pred             cccccccccccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHh
Q 011864           98 VELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISA  170 (476)
Q Consensus        98 ~~~~~l~e~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~  170 (476)
                      ..+..+.+.+.|+||+++|.+||++++|||+||..||..|+.   ..||.||..+.. ..+.+|..+..++..
T Consensus        14 ~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~-~~l~~n~~l~~lv~~   82 (97)
T d1jm7b_          14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI-QDLKINRQLDSMIQL   82 (97)
T ss_dssp             HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC-SSCCCCHHHHHHHHH
T ss_pred             HHHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCch-hhCcccHHHHHHHHH
Confidence            345667788999999999999998679999999999999986   469999998876 668889888887743

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.1e-12  Score=107.22  Aligned_cols=67  Identities=12%  Similarity=0.140  Sum_probs=57.5

Q ss_pred             ccccccccccccccccceeecccC-CccchhHHHhhhhcCCCCCCCcccccccCCCCCCCcchHHHHHhhc
Q 011864          103 IRKDVQCPICLGIIKKTRTVMECL-HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALY  172 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~Pv~i~~Cg-H~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n~~L~~li~~l~  172 (476)
                      +.++|.||||+.+|.+||+ ++|+ |+||..||..|+. ....||.|+.++.. ..+.+|..|.+.|..+.
T Consensus        19 ~P~~f~CPI~~~lm~dPV~-~~~~~~ty~r~~I~~~l~-~~~~~P~~~~~l~~-~~L~pN~~Lr~~I~~~~   86 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTM-DQIRPNTELKEKIQRWL   86 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred             CcHHhCCcCchhHHHHHHh-cccccchhhHHHHHHHHH-hcCCcccccccccc-hhhcchHHHHHHHHHHH
Confidence            4568999999999999997 6665 5899999999998 55789999999886 67889999998886654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-12  Score=104.21  Aligned_cols=54  Identities=24%  Similarity=0.525  Sum_probs=46.5

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCcccccccCCCCCCC
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDD  161 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~~~~l~~n  161 (476)
                      ..|+||++.+.+|+. ++|||.||..||..|+..+.+.||+||..+.....+..+
T Consensus        24 ~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i~   77 (79)
T d1fbva4          24 QLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD   77 (79)
T ss_dssp             TBCTTTSSSBCCEEC-SSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSCC
T ss_pred             CCCccCCCcCCCeEE-eCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCceeecC
Confidence            469999999999996 999999999999999986667899999999875555443

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2.4e-12  Score=96.12  Aligned_cols=47  Identities=9%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      +.|+||++++.+||.+..|||+||..||.+|+.. +..||.||.++..
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCH
Confidence            4799999999999974579999999999999994 4789999998876

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.18  E-value=3.1e-12  Score=99.11  Aligned_cols=47  Identities=38%  Similarity=0.877  Sum_probs=41.9

Q ss_pred             ccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          107 VQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      -.|+||++.|.+++++++|||+||..||.+|+.. ...||+||+++..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence            3699999999988877999999999999999994 5789999998754

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-11  Score=95.01  Aligned_cols=50  Identities=30%  Similarity=0.658  Sum_probs=40.5

Q ss_pred             ccccccccccccccc----eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKT----RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~P----v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ++..||||++.+..+    +.+++|||.||..||..|+..+...||.||+++..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            356899999865432    34579999999999999997566789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.07  E-value=3.2e-11  Score=89.64  Aligned_cols=49  Identities=31%  Similarity=0.775  Sum_probs=40.2

Q ss_pred             ccccccccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCccccc
Q 011864          103 IRKDVQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHC  152 (476)
Q Consensus       103 l~e~l~C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~  152 (476)
                      +++...|+||++.|...   +.++.|+|.||..||..|+. .+..||.||..+
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH-hCCcCCCCCCEe
Confidence            34567899999999743   34357999999999999998 568999999865

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.6e-11  Score=90.50  Aligned_cols=44  Identities=27%  Similarity=0.756  Sum_probs=39.2

Q ss_pred             cccccccccccccceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      .+.|+||++.+.+|+. ++|||+||..||..|    ...||.||..+..
T Consensus         6 ~l~C~IC~~~~~~p~~-lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T d1bora_           6 FLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             CCCCcccCcccCCCEE-ecCCCHHhHHHHHcC----CCcCcCCCCcccC
Confidence            5789999999999996 899999999999765    4689999998876

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.7e-11  Score=87.63  Aligned_cols=47  Identities=30%  Similarity=0.663  Sum_probs=38.8

Q ss_pred             ccccccccccccc---eeecccCCccchhHHHhhhhcCCCCCCCcccccc
Q 011864          107 VQCPICLGIIKKT---RTVMECLHRFCRECIDKSMRLGNNECPACRTHCA  153 (476)
Q Consensus       107 l~C~ICl~~~~~P---v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~  153 (476)
                      +.||||++.|...   +.+++|||.||..||..|+......||.||+++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            4699999988643   2346899999999999999866678999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.8e-09  Score=90.82  Aligned_cols=50  Identities=24%  Similarity=0.606  Sum_probs=39.8

Q ss_pred             cccccccccccccc-----------------eeecccCCccchhHHHhhhhcC----CCCCCCcccccccC
Q 011864          106 DVQCPICLGIIKKT-----------------RTVMECLHRFCRECIDKSMRLG----NNECPACRTHCASR  155 (476)
Q Consensus       106 ~l~C~ICl~~~~~P-----------------v~i~~CgH~FC~~CI~~~~~~~----~~~CP~CR~~~~~~  155 (476)
                      +..|+||++.|..+                 +.+++|+|.||..||..|+...    ..+||+||+.+...
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            45799999987542                 3458999999999999999743    34799999987653

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.9e-09  Score=85.24  Aligned_cols=47  Identities=26%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             cccccccccccc-----------------ceeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          107 VQCPICLGIIKK-----------------TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       107 l~C~ICl~~~~~-----------------Pv~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ..|+||+..+..                 ++.+++|||.||..||..|+. .+.+||+||+.+..
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~   85 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEF   85 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCCE
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHH-HCCcCCCCCCcccc
Confidence            348888776653                 345589999999999999999 45899999998753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.44  E-value=4.8e-08  Score=72.99  Aligned_cols=49  Identities=22%  Similarity=0.497  Sum_probs=39.1

Q ss_pred             ccccccccccccccceeeccc-----CCccchhHHHhhhhc-CCCCCCCccccccc
Q 011864          105 KDVQCPICLGIIKKTRTVMEC-----LHRFCRECIDKSMRL-GNNECPACRTHCAS  154 (476)
Q Consensus       105 e~l~C~ICl~~~~~Pv~i~~C-----gH~FC~~CI~~~~~~-~~~~CP~CR~~~~~  154 (476)
                      +...|+||++.+.++.. .+|     +|.||..||..|+.. +..+||+||+.+..
T Consensus         5 d~~~C~IC~~~~~~~~~-~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNERF-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCC-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCcee-EecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            35579999998877653 444     599999999999963 56799999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-06  Score=67.92  Aligned_cols=45  Identities=29%  Similarity=0.752  Sum_probs=33.9

Q ss_pred             cccccccccccc--cceeecccCCccchhHHHhhhhc----C---CCCCCCccc
Q 011864          106 DVQCPICLGIIK--KTRTVMECLHRFCRECIDKSMRL----G---NNECPACRT  150 (476)
Q Consensus       106 ~l~C~ICl~~~~--~Pv~i~~CgH~FC~~CI~~~~~~----~---~~~CP~CR~  150 (476)
                      ...|+||++.+.  +.+.+++|+|.||..||..|+..    +   .-.||.|.-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            457999999875  33444789999999999999962    1   126998754

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.33  Score=36.26  Aligned_cols=42  Identities=31%  Similarity=0.793  Sum_probs=32.0

Q ss_pred             cccccccccccccceeeccc----CCccchhHHHhhhhc----CCCCCCCc
Q 011864          106 DVQCPICLGIIKKTRTVMEC----LHRFCRECIDKSMRL----GNNECPAC  148 (476)
Q Consensus       106 ~l~C~ICl~~~~~Pv~i~~C----gH~FC~~CI~~~~~~----~~~~CP~C  148 (476)
                      .+.|.+|.+.+.+..+ ..|    +|.||..|-..+++.    +.-.||.-
T Consensus         8 ~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG   57 (80)
T d2cs3a1           8 PLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   57 (80)
T ss_dssp             SCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             ceeeeeehhhhcCCce-EeCCCCcCCceeccccHHHHHhcCCCCcEECCCC
Confidence            4789999999998865 445    699999999998872    22357654

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.19  E-value=0.31  Score=37.68  Aligned_cols=49  Identities=31%  Similarity=0.619  Sum_probs=38.1

Q ss_pred             ccccccccccccc-----c-eeecccCCccchhHHHhhhhcCCCCCCCccccccc
Q 011864          106 DVQCPICLGIIKK-----T-RTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS  154 (476)
Q Consensus       106 ~l~C~ICl~~~~~-----P-v~i~~CgH~FC~~CI~~~~~~~~~~CP~CR~~~~~  154 (476)
                      ...|.||.+.+--     + |.+-.|+-..|..|..-=.+.++..||.|.+++..
T Consensus        16 ~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             cchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            4579999986542     2 33456888899999987777788999999998865

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.25  Score=35.68  Aligned_cols=44  Identities=25%  Similarity=0.582  Sum_probs=31.6

Q ss_pred             cccccccccccccccc--eeecccCCccchhHHHhhhhcCCCCCCCc
Q 011864          104 RKDVQCPICLGIIKKT--RTVMECLHRFCRECIDKSMRLGNNECPAC  148 (476)
Q Consensus       104 ~e~l~C~ICl~~~~~P--v~i~~CgH~FC~~CI~~~~~~~~~~CP~C  148 (476)
                      .....|.-|...+.+.  .....|++.||..|= -++......||-|
T Consensus        13 ~~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD-~fiHe~lh~CpgC   58 (59)
T d1z60a1          13 NGERFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC   58 (59)
T ss_dssp             CSCCEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred             CCCCCccCCCCcCCCCceEECcCCCCccccccc-hhhhhhhcCCCCC
Confidence            3456799998877755  335779999999994 3333455689988