Citrus Sinensis ID: 011897
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 475 | ||||||
| 224117960 | 467 | predicted protein [Populus trichocarpa] | 0.978 | 0.995 | 0.827 | 0.0 | |
| 224113753 | 465 | predicted protein [Populus trichocarpa] | 0.978 | 1.0 | 0.827 | 0.0 | |
| 297741763 | 717 | unnamed protein product [Vitis vinifera] | 0.981 | 0.649 | 0.804 | 0.0 | |
| 359494826 | 617 | PREDICTED: DUF246 domain-containing prot | 0.981 | 0.755 | 0.804 | 0.0 | |
| 356520091 | 583 | PREDICTED: DUF246 domain-containing prot | 0.978 | 0.797 | 0.812 | 0.0 | |
| 255554775 | 642 | conserved hypothetical protein [Ricinus | 1.0 | 0.739 | 0.828 | 0.0 | |
| 356564474 | 579 | PREDICTED: DUF246 domain-containing prot | 0.978 | 0.803 | 0.804 | 0.0 | |
| 357480375 | 620 | hypothetical protein MTR_4g132590 [Medic | 0.970 | 0.743 | 0.800 | 0.0 | |
| 449455459 | 672 | PREDICTED: DUF246 domain-containing prot | 0.978 | 0.691 | 0.780 | 0.0 | |
| 449513539 | 672 | PREDICTED: DUF246 domain-containing prot | 0.978 | 0.691 | 0.780 | 0.0 |
| >gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/465 (82%), Positives = 423/465 (90%)
Query: 11 ENKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRVAICNAVVL 70
+NK+EPKDLW+EP VPASAW PCAD R+W PS GNNGYILVTANGGMNQQRVA+CNAVVL
Sbjct: 3 QNKQEPKDLWQEPFVPASAWRPCADHRDWNPSEGNNGYILVTANGGMNQQRVAVCNAVVL 62
Query: 71 ARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSLDLEAI 130
ARLLN++LV+P+FMYSSVWRDVSQFS IYQEEHFINYLTPDIR+VKELP +LQSLDLEAI
Sbjct: 63 ARLLNSSLVIPRFMYSSVWRDVSQFSHIYQEEHFINYLTPDIRIVKELPKELQSLDLEAI 122
Query: 131 GSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFH 190
GS VTDVD+PKES+PSFYLK+I+PILL+N VVH +GFGNRLAFDPIPFQLQRLRCRCNFH
Sbjct: 123 GSTVTDVDVPKESEPSFYLKSILPILLKNRVVHFVGFGNRLAFDPIPFQLQRLRCRCNFH 182
Query: 191 ALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHL 250
ALQF PKIQETGALLL+RLRKH H G LDHYL GP+A+ +K K G + KASRYLAIHL
Sbjct: 183 ALQFVPKIQETGALLLQRLRKHATHPGSLDHYLTGPFAEPNLKGKVGHAVKASRYLAIHL 242
Query: 251 RFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTP 310
RFEIDM+AHSLCE+GGGEEER+ELE YREIHFPAL HLKKTT+L SPA +RSEGLCPLTP
Sbjct: 243 RFEIDMLAHSLCEYGGGEEERKELEAYREIHFPALTHLKKTTELRSPALLRSEGLCPLTP 302
Query: 311 EEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNF 370
EEAVLMLAALGF RKTH+F+AGA IYGG RL AL SLYP LVTKE LLSATEL+PF NF
Sbjct: 303 EEAVLMLAALGFRRKTHMFIAGANIYGGRSRLTALTSLYPNLVTKEKLLSATELKPFMNF 362
Query: 371 SSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKN 430
SSQLAALDFI CTA++AFAMTDSGSQLSSLVSG+RIYYGGGKMPTIRPNKRRLA IF+KN
Sbjct: 363 SSQLAALDFIACTASDAFAMTDSGSQLSSLVSGFRIYYGGGKMPTIRPNKRRLADIFMKN 422
Query: 431 STIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 475
+TIEWK+FEQRVRKAVRQTKH+ R K RSVYRYPRCKECMC T+
Sbjct: 423 NTIEWKIFEQRVRKAVRQTKHVFERPKARSVYRYPRCKECMCLTE 467
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 475 | ||||||
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 1.0 | 0.728 | 0.725 | 8.8e-189 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.911 | 0.733 | 0.675 | 3.9e-163 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.985 | 0.765 | 0.538 | 3.3e-134 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.501 | 0.419 | 0.353 | 9.7e-74 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.429 | 0.366 | 0.369 | 4.7e-72 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.423 | 0.366 | 0.389 | 1.1e-70 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.503 | 0.425 | 0.348 | 1.1e-70 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.406 | 0.350 | 0.406 | 3.7e-70 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.410 | 0.343 | 0.422 | 4e-70 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.955 | 0.900 | 0.350 | 4.3e-70 |
| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1830 (649.3 bits), Expect = 8.8e-189, P = 8.8e-189
Identities = 347/478 (72%), Positives = 394/478 (82%)
Query: 1 MLALAAHALAE--NKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMN 58
+LA AAHALAE NK EPK+LWREP A AW PCADQR+W+PS G NGYI+VTANGG+N
Sbjct: 175 LLAYAAHALAEGQNKLEPKELWREPKDQALAWKPCADQRSWKPSDGKNGYIMVTANGGIN 234
Query: 59 QQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKEL 118
QQRVA+CN VV+AR+LNATLV+PKFM+S VW D SQF DIYQ EHFI YL+PDIR+VK+L
Sbjct: 235 QQRVAVCNIVVVARMLNATLVIPKFMFSDVWTDASQFGDIYQVEHFIKYLSPDIRIVKKL 294
Query: 119 PNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPF 178
P +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAFDPIPF
Sbjct: 295 PKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAFDPIPF 354
Query: 179 QLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIMKEKRG 237
+LQRLRCRCNFHAL F PKIQETGA+L+RRLR H P+D YLVGP +A I+ +K G
Sbjct: 355 ELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFILDKKAG 414
Query: 238 QSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTTKLPSP 297
KAS+YLA+HLRFEIDMVAHSLC HFP LA+L KT K+PSP
Sbjct: 415 PLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQKMPSP 474
Query: 298 AEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKEN 357
++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP LVTKEN
Sbjct: 475 DDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNLVTKEN 534
Query: 358 LLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIR 417
+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GKMPTIR
Sbjct: 535 VLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGKMPTIR 594
Query: 418 PNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 475
PNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+ R GRSVYRYPRCKECMC D
Sbjct: 595 PNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMCNED 652
|
|
| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.XI.1485.1 | hypothetical protein (462 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 475 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-140 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-110 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 5e-05 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 2e-04 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 402 bits (1036), Expect = e-140
Identities = 153/365 (41%), Positives = 204/365 (55%), Gaps = 76/365 (20%)
Query: 48 YILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINY 107
Y+LV+ANGG+NQQR IC+AV +ARLLNATLV+P+ +SVW D S+F DIY +HFI
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 108 LTPDIRMVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGF 167
L D+R+VK+LP +L S E +T +P S PS+YL+ ++P+L ++GV+ L F
Sbjct: 61 LKDDVRVVKKLPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPF 115
Query: 168 GNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPY 227
+RLA D +P ++QRLRCR NFHAL+F P+I+E G L+ RLR+ G
Sbjct: 116 DSRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG------------- 162
Query: 228 ADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAH 287
+LA+HLRFE DM+A S C
Sbjct: 163 ----------------PFLALHLRFEKDMLAFSGC------------------------- 181
Query: 288 LKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNS 347
G CPLTPEE L+L ALGF R T +++A +IYGG RRL L S
Sbjct: 182 ----------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRS 225
Query: 348 LYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIY 407
++P L TKE L +A EL PF SS+LAALD+I C ++ F T G + V+G+R Y
Sbjct: 226 IFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRY 284
Query: 408 YGGGK 412
G K
Sbjct: 285 LGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 475 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.97 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 95.59 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-57 Score=452.54 Aligned_cols=308 Identities=39% Similarity=0.603 Sum_probs=210.4
Q ss_pred ecCchhhHHHHHHHHHHHHHHhcCeEeecccccCCcccCCCC-----CCcccchHHHHHhccCCceecccCchhhhhhhh
Q 011897 53 ANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDL 127 (475)
Q Consensus 53 ~nGGlnq~R~~IcdaVavArlLNATLVlP~l~~~s~w~D~S~-----F~dIfD~~hFi~~L~~dVrIvk~LP~~~~~~~~ 127 (475)
+.||+||||+++++||++|++||+|||||.+...+.|++.++ |+++||+++|+++++.+|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999887 999999999999999999999999877655322
Q ss_pred hhh------------------------cccccccCCCC-CCChhHHHhhhhHhHhhc------ceEEEecccCCCcCCCC
Q 011897 128 EAI------------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPI 176 (475)
Q Consensus 128 ~~~------------------------~~~~~~~~~~~-~s~~~~Y~~~ilP~l~k~------~Vi~l~~~~~rLa~~~~ 176 (475)
... ........... ++.+.+|+++++|.+.++ +|+.|.++..++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 00011112223 778889998899999987 99999999999998888
Q ss_pred ChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeeehhhhh
Q 011897 177 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDM 256 (475)
Q Consensus 177 p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E~DM 256 (475)
+.++|| +|+|.++|+++|++++++++.. +++|||+|||+|+||
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~-----------------------------~~~yiavHlR~~~D~ 208 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAG-----------------------------GGPYIAVHLRRGKDW 208 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcc-----------------------------cCceEEEeecccCch
Confidence 899988 9999999999999999999931 268999999999999
Q ss_pred hhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHhhhcCCCCcCCHHHHHHHHHHcCCCCCcEEEEEecccc
Q 011897 257 VAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIY 336 (475)
Q Consensus 257 lA~sgC~~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiy 336 (475)
+++|.+++ ++..|+.+|.. ..+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|
T Consensus 209 --~~~C~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~ 273 (351)
T PF10250_consen 209 --FSACEFKG---ERHLLASPRCW----------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIY 273 (351)
T ss_dssp --HHHHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS--
T ss_pred --HhhcccCC---chHHHHHhHhh----------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 88999954 78888888863 1234567778899999999999999999999999999999999999
Q ss_pred CccccchHHHhhCCCccccccCCCcccccccccccccchhhheeeeccCceeeecCCCCchhhhhhhhhhhccCCCCce
Q 011897 337 GGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 415 (475)
Q Consensus 337 Gg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AALDy~V~~~SDvFv~t~~G~nf~~~V~GhR~y~g~g~~kt 415 (475)
||.++|.+|++.||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+.+|+++|.|.|.+++||
T Consensus 274 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 274 GGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp ---------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred ccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 999999999999999999999999999999965 899999999999999999998 6689999999999999766555
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 475 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 5e-07
Identities = 47/315 (14%), Positives = 86/315 (27%), Gaps = 97/315 (30%)
Query: 66 NAVVLARLLNATL------VVPKFM-------YSSVW-------RDVSQFSDIYQEEH-- 103
+AV L TL +V KF+ Y + R S + +Y E+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 104 -------FINYLTPDIRMVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKP 145
F Y ++ +L L L G + V DV
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------- 170
Query: 146 SFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQ 199
+ + + L N + + + LQ+L + N+ +
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 200 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIH 249
+ LRRL K + + L LV ++ + ++ A +R+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 250 LRFEIDMVAH-SLCEFGGGEEERQELE---KYREIHFPALAHLKKTTKLPSPAEIRSEGL 305
H SL + KY + + LP +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---------RPQDLPREVLTTN--- 326
Query: 306 CPLTPEEAVLMLAAL 320
P + ++A
Sbjct: 327 -PR----RLSIIAES 336
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 475 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.55 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.19 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 96.75 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 96.64 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=147.86 Aligned_cols=300 Identities=21% Similarity=0.183 Sum_probs=163.9
Q ss_pred CCCCCcEEEEEe-cC-chhhHHHHHHHHHHHHHHhcCe----EeecccccCCcccCC------CCCCcccchHHHHHhcc
Q 011897 42 SGGNNGYILVTA-NG-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 109 (475)
Q Consensus 42 ~~~~nGyl~v~~-nG-Glnq~R~~IcdaVavArlLNAT----LVlP~l~~~s~w~D~------S~F~dIfD~~hFi~~L~ 109 (475)
....++||+-.. .| |+|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++.+ +
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~ 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----N 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----H
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----H
Confidence 356789999875 45 8999999999999999999999 999976533335443 279999999875 3
Q ss_pred CCceecccCchhhhhhh-hhhhc-------------cc----------c------cccCCCCCCChhHHH----------
Q 011897 110 PDIRMVKELPNKLQSLD-LEAIG-------------SV----------V------TDVDIPKESKPSFYL---------- 149 (475)
Q Consensus 110 ~dVrIvk~LP~~~~~~~-~~~~~-------------~~----------~------~~~~~~~~s~~~~Y~---------- 149 (475)
..|+|+.. +++.... +..+. .. + .........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 45566522 2221100 00000 00 0 000000001112211
Q ss_pred -------hhhhHhHhhc---ceEEEecccCCCcCCCCChhhhhhcccccccccccchhHHHHHHHHHHHHhcccCCCCCC
Q 011897 150 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 219 (475)
Q Consensus 150 -------~~ilP~l~k~---~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~p~I~~lg~~lV~Rlr~~~~~~~~~ 219 (475)
..+-|.+.+. ..+-+..+...|..-.-..+...+| ..|+|.+.|.+.|++.++..-... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~----~~ 242 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNST----DD 242 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCC----TT
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcc----cc
Confidence 1122333322 1122222333333111122222222 379999999999999888654321 00
Q ss_pred CcccCCCccchhhhhhhcccccCCceEEEeeehhhhhhhhccccCCCChhHHHHHHHHHHhhhhhhhhhhcCCCCCChHh
Q 011897 220 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 299 (475)
Q Consensus 220 ~~~~~g~~~~~~~~~~~~~~~~~~~ylAlHLR~E~DMlA~sgC~~gg~~~E~~eL~~~R~~~~p~~~~~~~~~k~i~~~~ 299 (475)
.+.+.-+-.-....... ....+++|+|+|+|-+.=+.++..|.
T Consensus 243 ~~h~r~~~dw~~~~~~~-~~~~~~~y~~~H~Rr~d~~~~~~~~~------------------------------------ 285 (408)
T 4ap5_A 243 ADRIPFQEDWMKMKVKL-GSALGGPYLGVHLRRKDFIWGHRQDV------------------------------------ 285 (408)
T ss_dssp TTTCCCCSSGGGCCCCT-TCBCCEEEEEEEECCTTTTTTTCSSS------------------------------------
T ss_pred eeecccchhHhhhhccc-ccccCCCccccccccccchhhhhccC------------------------------------
Confidence 00000000000000001 12235789999999863222322222
Q ss_pred hhcCCCCcCC---HHHHHHHHHHcCCCCCcEEEEEeccccCccccchHHHhhCCCccccccCCCcccccccccccccchh
Q 011897 300 IRSEGLCPLT---PEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAA 376 (475)
Q Consensus 300 ~R~~G~CPLt---PeEvgl~L~alGf~~~T~IYlA~geiyGg~~~m~~L~~~FPnl~tKetL~s~eEL~pf~~~ss~~AA 376 (475)
|-. .+.+.-+++..+ -+.||||+-+. +..+..|++.+|.++.-.. ..+++..+ ...++|.
T Consensus 286 -------ps~~~~~~~i~~~~~~~~---~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~ 348 (408)
T 4ap5_A 286 -------PSLEGAVRKIRSLMKTHR---LDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAI 348 (408)
T ss_dssp -------CCHHHHHHHHHHHHHHHT---CSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHhcC---CCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhH
Confidence 211 122333344443 34599998643 3456789999998764322 22444444 3356799
Q ss_pred hheeeeccCceeeecCCCCchhhhhhhhhhhccCC
Q 011897 377 LDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGG 411 (475)
Q Consensus 377 LDy~V~~~SDvFv~t~~G~nf~~~V~GhR~y~g~g 411 (475)
||-+||.+||+||+|..+ +|+..|.-.|.+.|..
T Consensus 349 idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 349 IDQWICAHARFFIGTSVS-TFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBC
T ss_pred HHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCC
Confidence 999999999999999855 7999999999999853
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00