Citrus Sinensis ID: 011900

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
cccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEEEccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEEEcccccccccccccEEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MGGGFRVLHLvrpflpflpevqsadrkipfrEKVIYTVISLFIFLVcsqlplygihsttgadpfYWMRVILASNrgtvmelgiTPIVTSGLVMQLLAGSkiievdnnvrEDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLqkgyglgsGISLFIATNICESIIwkafspttinsgrgaefEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVlpvrsknargqqgaypiklfytsnmPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGkwkeseysghsipvgglayyvtapasladmaanPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEqqmvmpghrdsnLQKELNRYIptaaafggVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MGGGFRVLHlvrpflpflpevqsadrkipFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPvrsknargqqGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
****FRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVS*****************************LNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE**********
***GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVD****EDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPV*S********AYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSA************VMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFE*FE************
MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
**GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
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MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q54XK2475 Protein transport protein yes no 0.991 0.991 0.719 0.0
Q9JLR1476 Protein transport protein yes no 0.987 0.985 0.699 0.0
Q9H9S3476 Protein transport protein yes no 0.987 0.985 0.699 0.0
Q2KHX4476 Protein transport protein yes no 0.987 0.985 0.699 0.0
Q90ZM2476 Protein transport protein yes no 0.983 0.981 0.694 0.0
Q7T278476 Protein transport protein N/A no 0.987 0.985 0.693 0.0
Q7T277476 Protein transport protein N/A no 0.987 0.985 0.693 0.0
Q5NVM7476 Protein transport protein yes no 0.987 0.985 0.697 0.0
Q8AY32476 Protein transport protein N/A no 0.987 0.985 0.691 0.0
Q8AY36476 Protein transport protein N/A no 0.987 0.985 0.693 0.0
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1 Back     alignment and function desciption
 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/471 (71%), Positives = 401/471 (85%)

Query: 4   GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
           GFR L +V+PF   +PEV   DRKIPFREKV++T I LFIFLVCSQ+PLYGI ST  +DP
Sbjct: 2   GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDP 61

Query: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
           FYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G
Sbjct: 62  FYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFG 121

Query: 124 ILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGIS 183
           +LI +G+ VAY+ SG YG  + LG GN  LI+LQL FAGIIV+ LDELLQKGYG+GSGIS
Sbjct: 122 MLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGIS 181

Query: 184 LFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
           LFIATNICE+I+WK FSPTT++ G+G EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLP
Sbjct: 182 LFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLP 241

Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
           NITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQSALVSN
Sbjct: 242 NITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSN 301

Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHAL 363
           LYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P +++ + A+PFHAL
Sbjct: 302 LYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHAL 361

Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAA 423
           FY+ FMLT+CALFSK WIEVSGSSARDVAKQLK+QQM M GHRD+++ KELNRYIPTAAA
Sbjct: 362 FYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQMTMKGHRDTSVIKELNRYIPTAAA 421

Query: 424 FGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 474
           FGG+CIGALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct: 422 FGGLCIGALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3 Back     alignment and function description
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q5NVM7|S61A2_PONAB Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
255562508476 preprotein translocase secy subunit, put 1.0 0.997 0.951 0.0
225461724476 PREDICTED: protein transport protein Sec 1.0 0.997 0.941 0.0
356543211476 PREDICTED: protein transport protein Sec 1.0 0.997 0.939 0.0
356544102476 PREDICTED: protein transport protein Sec 1.0 0.997 0.936 0.0
6581004476 putative integral membrane protein [Phas 1.0 0.997 0.939 0.0
359807371476 uncharacterized protein LOC100798372 [Gl 1.0 0.997 0.934 0.0
414865500475 TPA: hypothetical protein ZEAMMB73_20515 1.0 1.0 0.938 0.0
255645765476 unknown [Glycine max] 1.0 0.997 0.936 0.0
15226261475 protein transport protein SEC61 subunit 1.0 1.0 0.938 0.0
186479015475 SecY protein transport family protein [A 1.0 1.0 0.941 0.0
>gi|255562508|ref|XP_002522260.1| preprotein translocase secy subunit, putative [Ricinus communis] gi|223538513|gb|EEF40118.1| preprotein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/476 (95%), Positives = 468/476 (98%), Gaps = 1/476 (0%)

Query: 1   MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           MGGGFRVLHLV+PFL  LPEVQ+ADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct: 1   MGGGFRVLHLVKPFLSVLPEVQNADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query: 121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
           LLGILIA+GEAVAYV+SGMYGSVSQLGAGNAILII+QLCFAGIIVICLDELLQKGYGLGS
Sbjct: 121 LLGILIAVGEAVAYVLSGMYGSVSQLGAGNAILIIIQLCFAGIIVICLDELLQKGYGLGS 180

Query: 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
           GISLFIATNICE+IIWKAFSPTTINSGRGAEFEGAVIALFHLLIT+ +KV ALREAFYRQ
Sbjct: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ 240

Query: 241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
           NLPN+TNLLATVL+FLIV+YFQGF+VVLPVRSKNARGQQG+YPIKLFYTSNMPIILQSAL
Sbjct: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query: 301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYS-GHSIPVGGLAYYVTAPASLADMAANP 359
           VSNLYFISQLLYRKYSGNF VNLLGKWKESEYS G  IPVGGLAYYVTAPASLADMAANP
Sbjct: 301 VSNLYFISQLLYRKYSGNFLVNLLGKWKESEYSGGQFIPVGGLAYYVTAPASLADMAANP 360

Query: 360 FHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIP 419
           FHALFYLVFML+ACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIP
Sbjct: 361 FHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIP 420

Query: 420 TAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 475
           TAAAFGG+CIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF
Sbjct: 421 TAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461724|ref|XP_002285514.1| PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera] Back     alignment and taxonomy information
>gi|356543211|ref|XP_003540056.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356544102|ref|XP_003540494.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|6581004|gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|359807371|ref|NP_001241126.1| uncharacterized protein LOC100798372 [Glycine max] gi|255637958|gb|ACU19295.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|414865500|tpg|DAA44057.1| TPA: hypothetical protein ZEAMMB73_205158 [Zea mays] gi|414865501|tpg|DAA44058.1| TPA: hypothetical protein ZEAMMB73_205158 [Zea mays] Back     alignment and taxonomy information
>gi|255645765|gb|ACU23375.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15226261|ref|NP_180972.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|79324249|ref|NP_001031476.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|297823211|ref|XP_002879488.1| hypothetical protein ARALYDRAFT_482367 [Arabidopsis lyrata subsp. lyrata] gi|13605799|gb|AAK32885.1|AF367298_1 At2g34250/F13P17.9 [Arabidopsis thaliana] gi|3337356|gb|AAC27401.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis thaliana] gi|21593809|gb|AAM65776.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis thaliana] gi|23308213|gb|AAN18076.1| At2g34250/F13P17.9 [Arabidopsis thaliana] gi|222423809|dbj|BAH19870.1| AT2G34250 [Arabidopsis thaliana] gi|297325327|gb|EFH55747.1| hypothetical protein ARALYDRAFT_482367 [Arabidopsis lyrata subsp. lyrata] gi|330253849|gb|AEC08943.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] gi|330253850|gb|AEC08944.1| protein transport protein SEC61 subunit alpha [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186479015|ref|NP_174225.2| SecY protein transport family protein [Arabidopsis thaliana] gi|20260296|gb|AAM13046.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis thaliana] gi|332192950|gb|AEE31071.1| SecY protein transport family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2040909475 AT2G34250 "AT2G34250" [Arabido 1.0 1.0 0.938 9.8e-238
TAIR|locus:2029894475 AT1G29310 "AT1G29310" [Arabido 1.0 1.0 0.941 1.2e-237
TAIR|locus:2037483475 AT1G78720 "AT1G78720" [Arabido 0.997 0.997 0.892 6.1e-229
DICTYBASE|DDB_G0278885475 sec61a "protein transport prot 0.991 0.991 0.719 2.2e-185
UNIPROTKB|Q2KHX4476 SEC61A2 "Protein transport pro 0.987 0.985 0.699 5.1e-177
UNIPROTKB|Q9H9S3476 SEC61A2 "Protein transport pro 0.987 0.985 0.699 5.1e-177
UNIPROTKB|F2Z5D0476 SEC61A2 "Uncharacterized prote 0.987 0.985 0.699 5.1e-177
MGI|MGI:1931071476 Sec61a2 "Sec61, alpha subunit 0.987 0.985 0.699 5.1e-177
UNIPROTKB|F1P4K3482 SEC61A2 "Uncharacterized prote 0.983 0.968 0.700 2.2e-176
UNIPROTKB|F1PC79476 SEC61A2 "Uncharacterized prote 0.983 0.981 0.700 2.2e-176
TAIR|locus:2040909 AT2G34250 "AT2G34250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2292 (811.9 bits), Expect = 9.8e-238, P = 9.8e-238
 Identities = 446/475 (93%), Positives = 464/475 (97%)

Query:     1 MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
             MGGGFRVLHLVRPFL FLPEVQSADRK+PFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
             ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query:   121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
             LLGILIAIGEAVAYV+SGMYG V QLG GNAILIILQL FAGIIVICLDELLQKGYGLGS
Sbjct:   121 LLGILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGS 180

Query:   181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
             GISLFIATNICESIIWKAFSPTTIN+GRGAEFEGAVIALFH+LITK NKV ALR+AFYRQ
Sbjct:   181 GISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQ 240

Query:   241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
             NLPN+TNLLATVL+FLIV+YFQGF+VVLPVRSKNARGQQG+YPIKLFYTSNMPIILQSAL
Sbjct:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query:   301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPF 360
             VSNLYFISQLLYRK+SGNFFVNLLG+WKESEYSG SIPV GLAY +TAPAS +DMAA+PF
Sbjct:   301 VSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSGQSIPVSGLAYLITAPASFSDMAAHPF 360

Query:   361 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPT 420
             HALFY+VFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR+SNLQKELNRYIPT
Sbjct:   361 HALFYIVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPT 420

Query:   421 AAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 475
             AAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE+ASELGFFGF
Sbjct:   421 AAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF 475
GO:0009306 "protein secretion" evidence=ISS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2029894 AT1G29310 "AT1G29310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037483 AT1G78720 "AT1G78720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278885 sec61a "protein transport protein SEC61 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5D0 SEC61A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1931071 Sec61a2 "Sec61, alpha subunit 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4K3 SEC61A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC79 SEC61A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96TW8SC61A_HANANNo assigned EC number0.58560.97050.9624N/Ano
Q9YDD0SECY_AERPENo assigned EC number0.31790.89260.9277yesno
P78979SC61A_YARLINo assigned EC number0.56580.97470.9830yesno
Q870W0SC61A_NEUCRNo assigned EC number0.63120.97050.9684N/Ano
Q9HPB1SECY_HALSANo assigned EC number0.30200.92420.8940yesno
Q90YL4S61A2_DANRENo assigned EC number0.68570.98310.9810yesno
Q977V3SECY_HALVDNo assigned EC number0.30800.93260.9059yesno
Q6FRY3SC61A_CANGANo assigned EC number0.55960.96840.9603yesno
Q7T278SC61A_HARANNo assigned EC number0.69340.98730.9852N/Ano
Q98SN9S61A1_ONCMYNo assigned EC number0.68920.98730.9852N/Ano
Q98SN8S61A2_ONCMYNo assigned EC number0.69340.98730.9852N/Ano
Q8AY32SC61A_GADOCNo assigned EC number0.69130.98730.9852N/Ano
Q8AY33SC61A_BORSANo assigned EC number0.68490.98730.9852N/Ano
Q8AY31SC61A_BOVVANo assigned EC number0.69130.98730.9852N/Ano
Q90ZM2S61A1_DANRENo assigned EC number0.69420.98310.9810yesno
P32915SC61A_YEASTNo assigned EC number0.53570.96840.9583yesno
Q2KHX4S61A2_BOVINNo assigned EC number0.69970.98730.9852yesno
Q9UX84SECY_SULSONo assigned EC number0.31030.920.9317yesno
Q5NVM7S61A2_PONABNo assigned EC number0.69760.98730.9852yesno
Q8AY36SC61A_PAGBONo assigned EC number0.69340.98730.9852N/Ano
P79088SC61A_SCHPONo assigned EC number0.54600.95360.9457yesno
Q9H9S3S61A2_HUMANNo assigned EC number0.69970.98730.9852yesno
Q25147SC61A_HALRONo assigned EC number0.68490.98520.9852N/Ano
P38379SC61A_PYRSANo assigned EC number0.70060.96420.9271N/Ano
O28377SECY_ARCFUNo assigned EC number0.31510.90100.8681yesno
O26134SECY_METTHNo assigned EC number0.37410.90940.9473yesno
Q7T277SC61A_DISMANo assigned EC number0.69340.98730.9852N/Ano
Q8AY34SC61A_HEMAMNo assigned EC number0.68710.98730.9852N/Ano
Q8U019SECY_PYRFUNo assigned EC number0.36140.92210.9358yesno
Q8AY35SC61A_NOTANNo assigned EC number0.69340.98730.9852N/Ano
Q6BN08SC61A_DEBHANo assigned EC number0.57570.97260.9645yesno
P28541SECY_METVANo assigned EC number0.35710.89050.9657yesno
Q60175SECY_METJANo assigned EC number0.35420.87570.9541yesno
Q54XK2SC61A_DICDINo assigned EC number0.71970.99150.9915yesno
Q9P8E3SC61A_CANALNo assigned EC number0.58000.97260.9645N/Ano
Q6CPY9SC61A_KLULANo assigned EC number0.54320.96840.9583yesno
Q9JLR1S61A2_MOUSENo assigned EC number0.69970.98730.9852yesno
O59442SECY_PYRHONo assigned EC number0.36050.91360.9273yesno
Q752H7SC61A_ASHGONo assigned EC number0.55070.96630.9562yesno
Q9V1V8SECY_PYRABNo assigned EC number0.36850.91780.9316yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027847001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  •    0.812
GSVIVG00037925001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (205 aa)
   • •  0.800
GSVIVG00037758001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)
     •  0.800
GSVIVG00036059001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)
     •  0.800
GSVIVG00024600001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)
     •  0.800
GSVIVG00016972001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)
     •  0.800
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •    0.752
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •• • 0.672
GSVIVG00037864001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)
    ••• 0.671
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•       0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
PTZ00219474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 1e-133
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-100
pfam00344340 pfam00344, SecY, SecY translocase 8e-89
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 9e-89
pfam1055935 pfam10559, Plug_translocon, Plug domain of Sec61p 1e-13
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  845 bits (2184), Expect = 0.0
 Identities = 343/474 (72%), Positives = 412/474 (86%), Gaps = 1/474 (0%)

Query: 1   MGGGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           M    R L+L+RP +  LPEV   DRKIPF+EKV++T I+LF+FLVC Q+PLYGI S++ 
Sbjct: 1   MAKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSS 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           +DPFYWMRVILASNRGT+MELGI+PIVTS +VMQLLAGSKII+VD N +EDRAL  GAQK
Sbjct: 61  SDPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQK 120

Query: 121 LLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGS 180
           LLG+LI +GEAVAYV SGMYG +S++GAGNAILIILQL FAGI+VI LDELLQKGYGLGS
Sbjct: 121 LLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGS 180

Query: 181 GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ 240
           GISLFIATNICE+IIWKAFSPTTIN+GRG EFEGA+IALFHLL T+ +K+ AL+EAFYR 
Sbjct: 181 GISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRP 240

Query: 241 NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSAL 300
           +LPN+TNLLATVLVFL+V+YFQGF+V LP++S+  RGQQ +YPIKLFYTSN+PIILQ+AL
Sbjct: 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTAL 300

Query: 301 VSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPF 360
           VSNLYF SQ+LYR++  NF +NLLG+W+E EYSG S+PVGGLAYY++ P S +D+  +P 
Sbjct: 301 VSNLYFFSQILYRRFKNNFLINLLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPI 360

Query: 361 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS-NLQKELNRYIP 419
           H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK+Q M M G+RDS ++ + LNRYIP
Sbjct: 361 HTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIP 420

Query: 420 TAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 473
           TAA+FGG+CIGALT+LADF+GAIGSGTGILLAVTIIYQY+ETF KE+      F
Sbjct: 421 TAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYGFLF 474

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 97.43
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-106  Score=855.11  Aligned_cols=466  Identities=73%  Similarity=1.229  Sum_probs=425.6

Q ss_pred             CcCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhccccccccc
Q 011900            3 GGFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELG   82 (475)
Q Consensus         3 ~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLG   82 (475)
                      -||+|+|.+||+++++|||++|+++.++|+|++||++++++||+|++||+||+|.+...|++.+++++++.+|+|+|+||
T Consensus         3 ~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~LG   82 (474)
T PTZ00219          3 KMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMELG   82 (474)
T ss_pred             CcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHhc
Confidence            46999999999999999999999999999999999999999999999999999998778999999999999999999999


Q ss_pred             chhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Q 011900           83 ITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAG  162 (475)
Q Consensus        83 I~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs  162 (475)
                      |+|||||||+|||+++.|+.+.|++.++||||+|++||++|+++|++||++++..+.++...+.++...+.+++||++|+
T Consensus        83 I~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g~  162 (474)
T PTZ00219         83 ISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAG  162 (474)
T ss_pred             cHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHHH
Confidence            99999999999999988999999999999999999999999999999999998643334323334446788899999999


Q ss_pred             HHHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCC
Q 011900          163 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL  242 (475)
Q Consensus       163 ~~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~  242 (475)
                      ++++||||++|||||+|||+||+|++||+++++|+.|+|.+.....+.+++|+++++++.+.+++++..++.++++|.++
T Consensus       163 ~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~l  242 (474)
T PTZ00219        163 IVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPHL  242 (474)
T ss_pred             HHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhccc
Confidence            99999999999999999999999999999999999999987765555578898888877555677888999999999998


Q ss_pred             ccHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhh
Q 011900          243 PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVN  322 (475)
Q Consensus       243 ~~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~  322 (475)
                      |+++.++++++++.+++|+|++|||||++|+|++++++++|+|+||+|+||+|||+|++++|+++++++++.++++..++
T Consensus       243 ~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~  322 (474)
T PTZ00219        243 PNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLIN  322 (474)
T ss_pred             ccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            99888889999999999999999999999999999999999999999999999999999999999999876555555455


Q ss_pred             ccccccccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCcc
Q 011900          323 LLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVM  402 (475)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~I  402 (475)
                      ++++|.+.+++|...|++|+++|++||+++.+.+.+|.|.++|++++++||++|+++|++++|+||||+||||||+|++|
T Consensus       323 ~l~~~~~~~~~~~~~~v~gl~~~l~~p~~~~~~~~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~I  402 (474)
T PTZ00219        323 LLGQWQEVEYSGQSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGM  402 (474)
T ss_pred             cccceeccccccccccchhHHhhcCCCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCc
Confidence            66666531112445799999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             ccccCc-hhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhh
Q 011900          403 PGHRDS-NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERAS  468 (475)
Q Consensus       403 pGiRpg-~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~  468 (475)
                      ||+||| +|+|||+|+++|+|++||++++++|++|++++..+||||+||+|||++++||++.||+.+
T Consensus       403 pG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~  469 (474)
T PTZ00219        403 VGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ  469 (474)
T ss_pred             cCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh
Confidence            999999 999999999999999999999999999999988889999999999999999999999877

>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
2wwb_A476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 0.0
3mp7_A482 Lateral Opening Of A Translocon Upon Entry Of Prote 2e-78
3dkn_A430 Sec61 In The Canine Ribosome-Channel Complex From T 3e-74
1rh5_A436 The Structure Of A Protein Conducting Channel Lengt 3e-73
1rhz_A436 The Structure Of A Protein Conducting Channel Lengt 8e-73
2yxq_A431 The Plug Domain Of The Secy Protein Stablizes The C 6e-72
2yxr_A426 The Plug Domain Of The Secy Protein Stablizes The C 6e-71
3bo0_A442 Ribosome-Secy Complex Length = 442 7e-68
2ww9_A490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 2e-62
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/471 (68%), Positives = 394/471 (83%), Gaps = 4/471 (0%)
Query: 6   RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
           + L +++PF   LPE+Q  +RKI F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFY
Sbjct: 4   KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIL 125
           WMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV +  + DRAL NGAQKL G++
Sbjct: 64  WMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMI 122
Query: 126 IAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLF 185
           I IG+++ YVM+GMYG  S++GAG  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLF
Sbjct: 123 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
Query: 186 IATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNI 245
           IATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+
Sbjct: 183 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 242
Query: 246 TNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLY 305
            NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY
Sbjct: 243 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 302
Query: 306 FISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHAL 363
            ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL +Y++ P S   +  +P HA+
Sbjct: 303 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAV 362
Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAA 423
            Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAA
Sbjct: 363 VYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAA 422
Query: 424 FGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 474
           FGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct: 423 FGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
3mp7_A482 Preprotein translocase subunit SECY; protein trans 1e-176
1rh5_A436 Preprotein translocase SECY subunit; protein trans 1e-172
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-172
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 1e-148
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3din_C431 Preprotein translocase subunit SECY; protein trans 8e-04
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
 Score =  501 bits (1291), Expect = e-176
 Identities = 156/468 (33%), Positives = 264/468 (56%), Gaps = 16/468 (3%)

Query: 6   RVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
               ++     + PEV+   R++P RE+ ++T ++L ++ V +++P+YGI      D F 
Sbjct: 2   GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60

Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIL 125
           ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + 
Sbjct: 61  FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120

Query: 126 IAIGEAVAYVMSGMYGSVSQ-LGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISL 184
           +   EA  +++ G +G V   +    A+L+ILQL   GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179

Query: 185 FIATNICESIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP 243
           FIA  + ++I+ ++ +P T  N       + A++      I    K       +   + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239

Query: 244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSN 303
           ++ +++AT++VF IVVYF+  +V +P+  +     +G+YPI+  Y SN+PIIL  AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298

Query: 304 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHAL 363
           +   ++             L   W          P+ G   YV  P ++  +  NP  A+
Sbjct: 299 IQLWAR---------VLDRLGHPWLGRFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAI 349

Query: 364 FYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTA 421
            YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L+K L RYIP  
Sbjct: 350 VYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYV 409

Query: 422 AAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 469
             +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E
Sbjct: 410 TFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITE 457
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
Probab=100.00  E-value=1e-110  Score=886.26  Aligned_cols=469  Identities=68%  Similarity=1.163  Sum_probs=424.3

Q ss_pred             cCchHHhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccc
Q 011900            4 GFRVLHLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI   83 (475)
Q Consensus         4 ~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI   83 (475)
                      ++|++|.+||+.+++|||++|++|+|+|+|++||++++++||+|+|||+||+|.++..|++++++++||++|+|+|+|||
T Consensus         2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI   81 (476)
T 2wwb_A            2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI   81 (476)
T ss_dssp             CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred             CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999987778899999999999999999999


Q ss_pred             hhHHhHHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHH
Q 011900           84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGI  163 (475)
Q Consensus        84 ~PyItAsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~  163 (475)
                      +||||||||||||++.++.+.+++.+ ||||+|++|||+|+++|++||++++.++.++...+.+..+.+.++++|++|++
T Consensus        82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~  160 (476)
T 2wwb_A           82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL  160 (476)
T ss_dssp             THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence            99999999999998766777776655 99999999999999999999999987555543334556677899999999999


Q ss_pred             HHHHHhhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCc
Q 011900          164 IVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLP  243 (475)
Q Consensus       164 ~~~wL~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~  243 (475)
                      ++|||||+||||||+|||+||+|++||+++++|+.|+|.+.+...+.|++|+++.+++.+.+++++.++++++++|.++|
T Consensus       161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~  240 (476)
T 2wwb_A          161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP  240 (476)
T ss_dssp             HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred             HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence            99999999999999999999999999999999999999876665666788888877887766777777888889988877


Q ss_pred             cHHHHHHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhc
Q 011900          244 NITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNL  323 (475)
Q Consensus       244 ~l~~~~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~  323 (475)
                      ++..+++++++++++||+|++|||||+||+|.+|+++|+|+|+||+||||+|||+|++++|+++++++++.++++.++++
T Consensus       241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~  320 (476)
T 2wwb_A          241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL  320 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred             hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence            87788888889999999999999999999999999999999999999999999999999999999988655554545556


Q ss_pred             cccccccc--cCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCc
Q 011900          324 LGKWKESE--YSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMV  401 (475)
Q Consensus       324 l~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~  401 (475)
                      ++.|.+.+  .++.++|++|+++|++||+++.+.+.+|+|.++|.+++++||++|+++|++++|+||||+||||||||++
T Consensus       321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~  400 (476)
T 2wwb_A          321 LGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMV  400 (476)
T ss_dssp             HCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTT
T ss_pred             hhhhhhccccccccccccHHHHHHcCCcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence            66675321  1346789999999999999888778899999999999999999999999999999999999999999999


Q ss_pred             cccccCchhHHHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHhhhccCCCC
Q 011900          402 MPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG  474 (475)
Q Consensus       402 IpGiRpg~T~~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~~~~~~~~~  474 (475)
                      |||+||.+|+|||+|+++|+|++||+|++++|++|++++.++||||+||+||+++++||+++||+. |-|..|
T Consensus       401 IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~~~  472 (476)
T 2wwb_A          401 MRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGSMG  472 (476)
T ss_dssp             TCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSSCC
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhhhh
Confidence            999999999999999999999999999999999999998888999999999999999999999998 766443
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 1e-117
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  350 bits (898), Expect = e-117
 Identities = 157/459 (34%), Positives = 255/459 (55%), Gaps = 41/459 (8%)

Query: 11  VRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
           + P L  +PEV+   ++I F+EK+ +T I L ++ +   + +Y   +      F + + I
Sbjct: 3   LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61

Query: 71  LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGE 130
            AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL I++   E
Sbjct: 62  TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121

Query: 131 AVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           AV +V +G +G ++ L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177

Query: 191 CESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLA 250
            ++I   A  P           EG +    + LI                N+  I  ++ 
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPIIG 214

Query: 251 TVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQL 310
           T++VFL+VVY +  +V +P+     +G  G YPIK  Y SN+P+IL +AL +N+      
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274

Query: 311 LYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFML 370
           LY        + +LG ++          V G+AYY++ P  L+ + ++P HA+ Y++ M+
Sbjct: 275 LY-----RMGIPILGHYEGGR------AVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMI 323

Query: 371 TACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--DSNLQKELNRYIPTAAAFGGVC 428
             C +F   W+E +G   + +AK++    M + G R  +  ++  L RYIP         
Sbjct: 324 ITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAF 383

Query: 429 IGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 467
           +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +ER 
Sbjct: 384 VGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.8e-98  Score=782.70  Aligned_cols=419  Identities=38%  Similarity=0.712  Sum_probs=359.5

Q ss_pred             HhhhhhcccCccccccccccchHHHHHHHHHHHHHHHHcccccCCCcccCcCCChhhHHHHHHhhcccccccccchhHHh
Q 011900            9 HLVRPFLPFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVT   88 (475)
Q Consensus         9 ~~~~~~~~~lp~v~~p~~~~~l~~ril~T~~il~iy~lgs~IPlpGi~~~~~~~~~~~~~~~~a~~~~slfsLGI~PyIt   88 (475)
                      +.++|+.+.+|||++|+||.++|||++||++++++||+|+|||+||+|.+. .|.+.+++.+++++++|+|+|||+||||
T Consensus         1 ~~~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~-~~~~~~~~~~~a~~~~Sif~LGI~PyIt   79 (422)
T d1rh5a_           1 KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-PAIFEFWQTITASRIGTLITLGIGPIVT   79 (422)
T ss_dssp             CTTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCC-CSCCTTHHHHHTCCTTBTTTTTTHHHHH
T ss_pred             CCccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCc-ccHHHHHHHHhccccccHHHhChHHHHH
Confidence            357999999999999999999999999999999999999999999998765 4556677778899999999999999999


Q ss_pred             HHHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHH
Q 011900           89 SGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAIGEAVAYVMSGMYGSVSQLGAGNAILIILQLCFAGIIVICL  168 (475)
Q Consensus        89 AsIi~QLl~~~kl~~l~k~~~~gr~k~~~~tr~ltl~la~iQs~~~~~~g~~~~~~~~~~~~~~~~vl~L~aGs~~~~wL  168 (475)
                      |||+||||+..+++++||++|+||+|+|++||++|+++|++||+.++.++.+.   ..+....+.++++|++|++++|||
T Consensus        80 ASIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~---~~~~~~~~~iv~~L~aGt~~lmwL  156 (422)
T d1rh5a_          80 AGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFG---ILTPLLAFLVIIQIAFGSIILIYL  156 (422)
T ss_dssp             HHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999998753332   234456678899999999999999


Q ss_pred             hhhhhccccccchhHHHHHHHHHHHhHHhhcCcccccCCCCccchhhHHHHHHHHHhhchhhhHHHHHHhhcCCccHHHH
Q 011900          169 DELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNL  248 (475)
Q Consensus       169 ~e~it~g~GiGnG~SLiI~~gI~~~~~~~~f~p~~~~~~~~~~~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  248 (475)
                      ||+||| ||+|||+||+|++||+++++|+.++|.           |.+....+.+..+            ...++.+..+
T Consensus       157 ~E~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~~-----------~~~~~~~~~~~~~------------~~~~~~~~~l  212 (422)
T d1rh5a_         157 DEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPE-----------GYLWKFLNSLIQG------------VPNIEYIAPI  212 (422)
T ss_dssp             HHHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTT-----------CHHHHHHHHTTTT------------CCCGGGTHHH
T ss_pred             HHHHhh-cCcccchHHHHHHHHHHHHHHhccchh-----------HHHHHHHHhhhcc------------cchHHHHHHH
Confidence            999999 999999999999999999999999874           2232222211111            0123446677


Q ss_pred             HHHHHHHHHhhheeccEEEEeeeeccCCCCCcceeeccccccchhHHHHHHHHHHHHHHHHHHhhhcCCcchhhcccccc
Q 011900          249 LATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK  328 (475)
Q Consensus       249 ~~~l~~~~~vV~l~~~~~rIPi~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~  328 (475)
                      +.+++++++++|+|++|||||++|+|++++++|+|+|+||+|+||+|||+|++++|+++++++++...     +++++|.
T Consensus       213 ~~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~  287 (422)
T d1rh5a_         213 IGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYE  287 (422)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBC
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccC
Confidence            77888888999999999999999999999999999999999999999999999999999998865322     2445554


Q ss_pred             ccccCCCccccccccccccCcchhhhhccChhHHHHHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHcCCccccccCc
Q 011900          329 ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS  408 (475)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~y~~lii~fs~~Fs~~~~~~~g~~p~~iAe~Lkk~g~~IpGiRpg  408 (475)
                      .      ..+++++++|++||.++.+...+|.|.++|.++.+.+|++|+++|++++|+||||+||||||+|++|||+|||
T Consensus       288 ~------~~~~~~i~~~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG  361 (422)
T d1rh5a_         288 G------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKS  361 (422)
T ss_dssp             S------SSBSSSTTGGGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------C
T ss_pred             C------CchHHHHHHHhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCC
Confidence            2      3567899999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             -hhH-HHHHhhchhhhhHHHHHHHHHHHhHHHHhcccccchhHHHHHHHHHHHHHHHHHh
Q 011900          409 -NLQ-KELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKER  466 (475)
Q Consensus       409 -~T~-~yL~k~i~~~t~~Ga~~l~~la~lp~~~~~~g~GTslLI~Vgv~~~~ye~~~~e~  466 (475)
                       +|. +||+|+++|+|++||+|+|++|++|++++..|||||+||+|||+++++||++||+
T Consensus       362 ~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~~~~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         362 EKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhh
Confidence             995 5699999999999999999999999999999999999999999999999999997